debian/0000755000000000000000000000000012252316662007173 5ustar debian/watch0000644000000000000000000000005712252316662010226 0ustar version=3 http://sf.net/vmtk/vmtk-(.+)\.tar\.gzdebian/libvmtk1.0.lintian-overrides0000644000000000000000000000503712252316662014447 0ustar libvmtk1.0: package-name-doesnt-match-sonames libvtkvmtkCommon1.0 libvtkvmtkComputationalGeometry1.0 libvtkvmtkContrib1.0 libvtkvmtkDifferentialGeometry1.0 libvtkvmtkIO1.0 libvtkvmtkITK1.0 libvtkvmtkMisc1.0 libvtkvmtkRendering1.0 libvtkvmtkSegmentation1.0 libvmtk1.0: hardening-no-stackprotector usr/lib/libvtkvmtkCommon.so.1.0.1 libvmtk1.0: hardening-no-relro usr/lib/libvtkvmtkCommon.so.1.0.1 libvmtk1.0: spelling-error-in-binary usr/lib/libvtkvmtkComputationalGeometry.so.1.0.1 YuR Your libvmtk1.0: hardening-no-stackprotector usr/lib/libvtkvmtkComputationalGeometry.so.1.0.1 libvmtk1.0: hardening-no-relro usr/lib/libvtkvmtkComputationalGeometry.so.1.0.1 libvmtk1.0: hardening-no-stackprotector usr/lib/libvtkvmtkContrib.so.1.0.1 libvmtk1.0: hardening-no-fortify-functions usr/lib/libvtkvmtkContrib.so.1.0.1 libvmtk1.0: hardening-no-relro usr/lib/libvtkvmtkContrib.so.1.0.1 libvmtk1.0: hardening-no-stackprotector usr/lib/libvtkvmtkDifferentialGeometry.so.1.0.1 libvmtk1.0: hardening-no-relro usr/lib/libvtkvmtkDifferentialGeometry.so.1.0.1 libvmtk1.0: hardening-no-stackprotector usr/lib/libvtkvmtkIO.so.1.0.1 libvmtk1.0: hardening-no-relro usr/lib/libvtkvmtkIO.so.1.0.1 libvmtk1.0: hardening-no-stackprotector usr/lib/libvtkvmtkITK.so.1.0.1 libvmtk1.0: hardening-no-fortify-functions usr/lib/libvtkvmtkITK.so.1.0.1 libvmtk1.0: hardening-no-relro usr/lib/libvtkvmtkITK.so.1.0.1 libvmtk1.0: hardening-no-stackprotector usr/lib/libvtkvmtkMisc.so.1.0.1 libvmtk1.0: hardening-no-relro usr/lib/libvtkvmtkMisc.so.1.0.1 libvmtk1.0: hardening-no-stackprotector usr/lib/libvtkvmtkRendering.so.1.0.1 libvmtk1.0: hardening-no-relro usr/lib/libvtkvmtkRendering.so.1.0.1 libvmtk1.0: hardening-no-stackprotector usr/lib/libvtkvmtkSegmentation.so.1.0.1 libvmtk1.0: hardening-no-fortify-functions usr/lib/libvtkvmtkSegmentation.so.1.0.1 libvmtk1.0: hardening-no-relro usr/lib/libvtkvmtkSegmentation.so.1.0.1 libvmtk1.0: no-upstream-changelog libvmtk1.0: no-symbols-control-file usr/lib/libvtkvmtkRendering.so.1.0.1 libvmtk1.0: no-symbols-control-file usr/lib/libvtkvmtkMisc.so.1.0.1 libvmtk1.0: no-symbols-control-file usr/lib/libvtkvmtkSegmentation.so.1.0.1 libvmtk1.0: no-symbols-control-file usr/lib/libvtkvmtkDifferentialGeometry.so.1.0.1 libvmtk1.0: no-symbols-control-file usr/lib/libvtkvmtkITK.so.1.0.1 libvmtk1.0: no-symbols-control-file usr/lib/libvtkvmtkCommon.so.1.0.1 libvmtk1.0: no-symbols-control-file usr/lib/libvtkvmtkIO.so.1.0.1 libvmtk1.0: no-symbols-control-file usr/lib/libvtkvmtkComputationalGeometry.so.1.0.1 libvmtk1.0: no-symbols-control-file usr/lib/libvtkvmtkContrib.so.1.0.1 debian/vmtk.10000644000000000000000000000106712252316662010242 0ustar .TH VMTK "1" "June 2010" "vmtk" .SH NAME vmtk \- run vmtk scripts .SH SYNOPSIS .TP vmtk [ \fB\-\-ui pad|console\fR ] start in interactive mode .TP vmtk [ \fIPYPE\fR ] execute the pype \fIPYPE\fR .TP vmtk [ \fB\-\-file\fR \fIFILE\fR ] execute the content of file \fIFILE\fR .SH DESCRIPTION This manual page documents briefly the .B vmtk command. Better info can be found at http://www.vmtk.org .SH AUTHORS Luca Antiga and David Steinman This manual page was written by Johannes Ring for the Debian GNU/Linux system (but may be used by others). debian/patches/0000755000000000000000000000000012252316662010622 5ustar debian/patches/tetgen-O1.diff0000644000000000000000000000174012252316662013221 0ustar --- a/vtkVmtk/Utilities/tetgen1.4.3/CMakeLists.txt.orig 2012-05-24 15:01:14.000000000 +0000 +++ b/vtkVmtk/Utilities/tetgen1.4.3/CMakeLists.txt 2012-09-12 11:08:11.250041582 +0000 @@ -9,8 +9,8 @@ INCLUDE_DIRECTORIES(${TETGEN_SOURCE_DIR}) ADD_LIBRARY (tet STATIC ${TETGEN_SRCS}) -SET_TARGET_PROPERTIES(tet PROPERTIES COMPILE_FLAGS "-O0") +SET_TARGET_PROPERTIES(tet PROPERTIES COMPILE_FLAGS "-O1") IF(NOT WIN32) - SET_TARGET_PROPERTIES(tet PROPERTIES COMPILE_FLAGS "-O0 -fPIC") + SET_TARGET_PROPERTIES(tet PROPERTIES COMPILE_FLAGS "-O1 -fPIC") ENDIF(NOT WIN32) --- a/vtkVmtk/Utilities/tetgen1.4.3/makefile.orig 2012-05-24 15:01:14.000000000 +0000 +++ b/vtkVmtk/Utilities/tetgen1.4.3/makefile 2012-09-12 11:08:55.109419232 +0000 @@ -25,7 +25,7 @@ # always be equal to -O0 (no optimization). Otherwise, TetGen may not # work properly. -PREDCXXFLAGS = -O0 +PREDCXXFLAGS = -O1 # SWITCHES is a list of switches to compile TetGen. # ================================================= debian/patches/series0000644000000000000000000000001712252316662012035 0ustar tetgen-O1.diff debian/vmtk.lintian-overrides0000644000000000000000000000011312252316662013527 0ustar vmtk: no-upstream-changelog vmtk: description-synopsis-starts-with-article debian/copyright0000644000000000000000000006410012252316662011127 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: vmtk Upstream-Contact: vmtk-users@lists.sourceforge.net Source: http://www.vmtk.org Disclaimer: This package is not part of the main Debian GNU/Linux distribution, but uploaded to the non-free section. This is because it includes non-free software (Tetgen). However, the (Tetgen) license does not forbid Debian from using autobuilders to create binary packages. Files: * Copyright: 2004-2012, Luca Antiga, David Steinman License: BSD (3-clause) Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . 3. Neither the name of Orobix Srl, the Mario Negri Institute, of the University of Toronto, nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Files: debian/* Copyright: 2008-2012, Johannes Ring License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the full text of the GNU General Public License version 2 can be found in the file `/usr/share/common-licenses/GPL-2'. Files: vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITK.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesReader.cxx vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesReader.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesScalarReader.cxx vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesScalarReader.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilter.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilter2DFF.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterF2F.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterF3F3.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterFF.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterFUL.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterSS.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterULUL.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterUSUL.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterUSUS.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageWriter.cxx vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageWriter.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKUtility.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKWin32Header.h Copyright: Brigham and Women's Hospital (BWH) Comment: For more information, please see: http://www.slicer.org and http://wiki.na-mic.org/Wiki/index.php/Slicer3 . The 3D Slicer license below is a BSD style license, with extensions to cover contributions and other issues specific to 3D Slicer. License: BSD style 3D Slicer Contribution and Software License Agreement ("Agreement") Version 1.0 (December 20, 2005) . This Agreement covers contributions to and downloads from the 3D Slicer project ("Slicer") maintained by The Brigham and Women's Hospital, Inc. ("Brigham"). Part A of this Agreement applies to contributions of software and/or data to Slicer (including making revisions of or additions to code and/or data already in Slicer). Part B of this Agreement applies to downloads of software and/or data from Slicer. Part C of this Agreement applies to all transactions with Slicer. If you distribute Software (as defined below) downloaded from Slicer, all of the paragraphs of Part B of this Agreement must be included with and apply to such Software. . 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This Agreement shall supercede and replace any license terms that you may have agreed to previously with respect to Slicer. Files: vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementFunction.h vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementFunction.txx vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementImageFilter.h vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementImageFilter.txx vtkVmtk/Segmentation/itkFastMarchingDirectionalFreezeImageFilter.h vtkVmtk/Segmentation/itkFastMarchingDirectionalFreezeImageFilter.txx vtkVmtk/Segmentation/itkFastMarchingUpwindGradientImageFilter.h vtkVmtk/Segmentation/itkFastMarchingUpwindGradientImageFilter.txx vtkVmtk/Segmentation/itkHessianSmoothed3DToVesselnessMeasureImageFilter.h vtkVmtk/Segmentation/itkHessianSmoothed3DToVesselnessMeasureImageFilter.txx vtkVmtk/Segmentation/itkHessianToObjectnessMeasureImageFilter.h vtkVmtk/Segmentation/itkHessianToObjectnessMeasureImageFilter.txx vtkVmtk/Segmentation/itkMultiScaleHessianBasedMeasureImageFilter.h vtkVmtk/Segmentation/itkMultiScaleHessianBasedMeasureImageFilter.txx vtkVmtk/Segmentation/itkSymmetricEigenVectorAnalysisImageFilter.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterSF.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterSUL.h Copyright: 1999-2009, Insight Software Consortium License: BSD (3-clause) Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . * Neither the name of the Insight Software Consortium nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Files: vtkVmtk/Common/vtkvmtkWin32Header.h vtkVmtk/Misc/vtkvmtkStaticTemporalInterpolatedVelocityField.cxx vtkVmtk/Misc/vtkvmtkStaticTemporalStreamTracer.cxx Copyright: 1993-2009, Ken Martin 1993-2009, Will Schroeder 1993-2009, Bill Lorensen License: The Visualization Toolkit (VTK) License Files: vtkVmtk/ComputationalGeometry/vtkvmtkAppendFilter.h vtkVmtk/Misc/vtkvmtkStaticTemporalInterpolatedVelocityField.h vtkVmtk/Misc/vtkvmtkStaticTemporalStreamTracer.h Copyright: 1993-2009, Ken Martin 1993-2009, Will Schroeder 1993-2009, Bill Lorensen 2004-2012, Luca Antiga 2004-2012, David Steinman License: The Visualization Toolkit (VTK) License Files: vtkVmtk/Utilities/OpenNL/nl.h vtkVmtk/Utilities/OpenNL/nl_single_file.c Copyright: 2004-2010, Bruno Levy License: BSD style Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the ALICE Project-Team nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. . If you modify this software, you should include a notice giving the name of the person performing the modification, the date of modification, and the reason for such modification. . Contact: Bruno Levy . levy@loria.fr . ALICE Project LORIA, INRIA Lorraine, Campus Scientifique, BP 239 54506 VANDOEUVRE LES NANCY CEDEX FRANCE Files: vtkVmtk/Utilities/Stellar_1.0/* Copyright: 1995-1998, Jonathan Richard Shewchuk 2006-2008, Bryan Klingner License: BSD (3-clause) Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . - Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . - Neither the name of Jonathan Shewchuk nor the name of the University of California nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Comment: There is no license information in these files but the license is stated on the Stellar webpage: http://www.cs.berkeley.edu/~jrs/stellar/#about Files: vtkVmtk/Utilities/tetgen1.4.3/tetgen.cxx vtkVmtk/Utilities/tetgen1.4.3/tetgen.h Copyright: 2002-2009, Hang Si License: Modified MIT Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: . Distribution of modified versions of this code is permissible UNDER THE CONDITION THAT THIS CODE AND ANY MODIFICATIONS MADE TO IT IN THE SAME SOURCE FILES tetgen.h AND tetgen.cxx REMAIN UNDER COPYRIGHT OF THE ORIGINAL AUTHOR, BOTH SOURCE AND OBJECT CODE ARE MADE FREELY AVAILABLE WITHOUT CHARGE, AND CLEAR NOTICE IS GIVEN OF THE MODIFICATIONS. . Distribution of this code for any commercial purpose is permissible ONLY BY DIRECT ARRANGEMENT WITH THE COPYRIGHT OWNER. . The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. Files: vtkVmtk/Utilities/tetgen1.4.3/predicates.cxx Copyright: 1996, Jonathan Richard Shewchuk License: public-domain Routines for Arbitrary Precision Floating-point Arithmetic and Fast Robust Geometric Predicates (predicates.c) . May 18, 1996 . Placed in the public domain by Jonathan Richard Shewchuk School of Computer Science Carnegie Mellon University 5000 Forbes Avenue Pittsburgh, Pennsylvania 15213-3891 jrs@cs.cmu.edu . This file contains C implementation of algorithms for exact addition and multiplication of floating-point numbers, and predicates for robustly performing the orientation and incircle tests used in computational geometry. The algorithms and underlying theory are described in Jonathan Richard Shewchuk. "Adaptive Precision Floating- Point Arithmetic and Fast Robust Geometric Predicates." Technical Report CMU-CS-96-140, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, May 1996. (Submitted to Discrete & Computational Geometry.) . This file, the paper listed above, and other information are available from the Web page http://www.cs.cmu.edu/~quake/robust.html . License: The Visualization Toolkit (VTK) License Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . * Neither name of Ken Martin, Will Schroeder, or Bill Lorensen nor the names of any contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. debian/TODO0000644000000000000000000000015612252316662007665 0ustar TODO List for vmtk Debian Package -------------------------------- To Do: - Build docs from source package debian/source/0000755000000000000000000000000012252316662010473 5ustar debian/source/format0000644000000000000000000000001412252316662011701 0ustar 3.0 (quilt) debian/copyright_hints0000644000000000000000000010714312252316662012341 0ustar Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: FIXME Upstream-Contact: FIXME Source: FIXME Disclaimer: Autogenerated by CDBS Files: PypeS/pype.py PypeS/pypebatch.py PypeS/pyperun.py PypeS/pypescript.py PypeS/pypeserver.py PypeS/pypewrapper.py vmtkScripts/contrib/vmtkboundarylayer2.py vmtkScripts/contrib/vmtkdijkstradistancetopoints.py vmtkScripts/contrib/vmtkdistancetospheres.py vmtkScripts/contrib/vmtkgeodesicsurfaceresolution.py vmtkScripts/contrib/vmtkmeshaddexternallayer.py vmtkScripts/contrib/vmtkmeshclipcenterlines.py vmtkScripts/contrib/vmtkmeshtetrahedralize2.py vmtkScripts/contrib/vmtkmeshviewer2.py vmtkScripts/contrib/vmtkmeshwriter2.py vmtkScripts/contrib/vmtksurfaceresolution.py vmtkScripts/contrib/vmtksurfacewriter2.py vmtkScripts/vmtkactivetubes.py vmtkScripts/vmtkbifurcationprofiles.py vmtkScripts/vmtkbifurcationreferencesystems.py vmtkScripts/vmtkbifurcationsections.py vmtkScripts/vmtkbifurcationvectors.py vmtkScripts/vmtkboundarylayer.py vmtkScripts/vmtkboundaryreferencesystems.py 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vtkVmtk/IO/vtkvmtkFDNEUTWriter.h vtkVmtk/IO/vtkvmtkFluentWriter.cxx vtkVmtk/IO/vtkvmtkFluentWriter.h vtkVmtk/IO/vtkvmtkTetGenReader.cxx vtkVmtk/IO/vtkvmtkTetGenReader.h vtkVmtk/IO/vtkvmtkTetGenWriter.cxx vtkVmtk/IO/vtkvmtkTetGenWriter.h vtkVmtk/IO/vtkvmtkXdaReader.cxx vtkVmtk/IO/vtkvmtkXdaReader.h vtkVmtk/IO/vtkvmtkXdaWriter.cxx vtkVmtk/IO/vtkvmtkXdaWriter.h vtkVmtk/Misc/vtkvmtkAnnularCapPolyData.cxx vtkVmtk/Misc/vtkvmtkAnnularCapPolyData.h vtkVmtk/Misc/vtkvmtkBoundaryLayerGenerator.cxx vtkVmtk/Misc/vtkvmtkBoundaryLayerGenerator.h vtkVmtk/Misc/vtkvmtkImageBoxPainter.cxx vtkVmtk/Misc/vtkvmtkImageBoxPainter.h vtkVmtk/Misc/vtkvmtkIterativeClosestPointTransform.cxx vtkVmtk/Misc/vtkvmtkIterativeClosestPointTransform.h vtkVmtk/Misc/vtkvmtkLevelSetSigmoidFilter.cxx vtkVmtk/Misc/vtkvmtkLevelSetSigmoidFilter.h vtkVmtk/Misc/vtkvmtkLinearToQuadraticMeshFilter.cxx vtkVmtk/Misc/vtkvmtkLinearToQuadraticMeshFilter.h vtkVmtk/Misc/vtkvmtkLinearToQuadraticSurfaceMeshFilter.cxx vtkVmtk/Misc/vtkvmtkLinearToQuadraticSurfaceMeshFilter.h vtkVmtk/Misc/vtkvmtkLinearizeMeshFilter.cxx vtkVmtk/Misc/vtkvmtkLinearizeMeshFilter.h vtkVmtk/Misc/vtkvmtkMeshLambda2.cxx vtkVmtk/Misc/vtkvmtkMeshLambda2.h vtkVmtk/Misc/vtkvmtkMeshProjection.cxx vtkVmtk/Misc/vtkvmtkMeshProjection.h vtkVmtk/Misc/vtkvmtkMeshVelocityStatistics.cxx vtkVmtk/Misc/vtkvmtkMeshVelocityStatistics.h vtkVmtk/Misc/vtkvmtkMeshVorticity.cxx vtkVmtk/Misc/vtkvmtkMeshVorticity.h vtkVmtk/Misc/vtkvmtkMeshWallShearRate.cxx vtkVmtk/Misc/vtkvmtkMeshWallShearRate.h vtkVmtk/Misc/vtkvmtkPolyDataBoundaryExtractor.cxx vtkVmtk/Misc/vtkvmtkPolyDataBoundaryExtractor.h vtkVmtk/Misc/vtkvmtkPolyDataKiteRemovalFilter.cxx vtkVmtk/Misc/vtkvmtkPolyDataKiteRemovalFilter.h vtkVmtk/Misc/vtkvmtkPolyDataNetworkExtraction.cxx vtkVmtk/Misc/vtkvmtkPolyDataNetworkExtraction.h vtkVmtk/Misc/vtkvmtkPolyDataSizingFunction.cxx vtkVmtk/Misc/vtkvmtkPolyDataSizingFunction.h vtkVmtk/Misc/vtkvmtkPolyDataToUnstructuredGridFilter.cxx vtkVmtk/Misc/vtkvmtkPolyDataToUnstructuredGridFilter.h vtkVmtk/Misc/vtkvmtkRBFInterpolation.cxx vtkVmtk/Misc/vtkvmtkRBFInterpolation.h vtkVmtk/Misc/vtkvmtkSimpleCapPolyData.cxx vtkVmtk/Misc/vtkvmtkSimpleCapPolyData.h vtkVmtk/Misc/vtkvmtkSmoothCapPolyData.cxx vtkVmtk/Misc/vtkvmtkSmoothCapPolyData.h vtkVmtk/Misc/vtkvmtkStreamlineClusteringFilter.cxx vtkVmtk/Misc/vtkvmtkStreamlineClusteringFilter.h vtkVmtk/Misc/vtkvmtkStreamlineOsculatingCentersFilter.cxx vtkVmtk/Misc/vtkvmtkStreamlineOsculatingCentersFilter.h vtkVmtk/Misc/vtkvmtkStreamlineToParticlesFilter.cxx vtkVmtk/Misc/vtkvmtkStreamlineToParticlesFilter.h vtkVmtk/Misc/vtkvmtkSurfMeshWrapper.cxx vtkVmtk/Misc/vtkvmtkSurfMeshWrapper.h vtkVmtk/Misc/vtkvmtkSurfaceDistance.cxx vtkVmtk/Misc/vtkvmtkSurfaceDistance.h vtkVmtk/Misc/vtkvmtkSurfaceProjection.cxx vtkVmtk/Misc/vtkvmtkSurfaceProjection.h vtkVmtk/Misc/vtkvmtkTetGenWrapper.cxx vtkVmtk/Misc/vtkvmtkTetGenWrapper.h vtkVmtk/Rendering/vtkvmtkInteractorStyleTrackballCamera.cxx vtkVmtk/Rendering/vtkvmtkInteractorStyleTrackballCamera.h vtkVmtk/Segmentation/itkFWHMFeatureImageFilter.h vtkVmtk/Segmentation/itkFWHMFeatureImageFilter.txx vtkVmtk/Segmentation/itkUpwindGradientMagnitudeImageFilter.h vtkVmtk/Segmentation/itkUpwindGradientMagnitudeImageFilter.txx vtkVmtk/Segmentation/vtkvmtkActiveTubeFilter.cxx vtkVmtk/Segmentation/vtkvmtkActiveTubeFilter.h vtkVmtk/Segmentation/vtkvmtkBoundedReciprocalImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkBoundedReciprocalImageFilter.h vtkVmtk/Segmentation/vtkvmtkCardinalSpline.cxx vtkVmtk/Segmentation/vtkvmtkCardinalSpline.h vtkVmtk/Segmentation/vtkvmtkCollidingFrontsImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkCollidingFrontsImageFilter.h vtkVmtk/Segmentation/vtkvmtkConstrainedLaplacianPolyDataFilter.cxx vtkVmtk/Segmentation/vtkvmtkConstrainedLaplacianPolyDataFilter.h vtkVmtk/Segmentation/vtkvmtkCurvesLevelSetImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkCurvesLevelSetImageFilter.h vtkVmtk/Segmentation/vtkvmtkDanielssonDistanceMapImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkDanielssonDistanceMapImageFilter.h vtkVmtk/Segmentation/vtkvmtkFWHMFeatureImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkFWHMFeatureImageFilter.h vtkVmtk/Segmentation/vtkvmtkFastMarchingDirectionalFreezeImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkFastMarchingDirectionalFreezeImageFilter.h vtkVmtk/Segmentation/vtkvmtkFastMarchingUpwindGradientImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkFastMarchingUpwindGradientImageFilter.h vtkVmtk/Segmentation/vtkvmtkGeodesicActiveContourLevelSet2DImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkGeodesicActiveContourLevelSet2DImageFilter.h vtkVmtk/Segmentation/vtkvmtkGeodesicActiveContourLevelSetImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkGeodesicActiveContourLevelSetImageFilter.h vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeImageFilter.h vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeRecursiveGaussian2DImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeRecursiveGaussian2DImageFilter.h vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeRecursiveGaussianImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkGradientMagnitudeRecursiveGaussianImageFilter.h vtkVmtk/Segmentation/vtkvmtkITKFilterUtilities.h vtkVmtk/Segmentation/vtkvmtkLaplacianSegmentationLevelSetImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkLaplacianSegmentationLevelSetImageFilter.h vtkVmtk/Segmentation/vtkvmtkObjectnessMeasureImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkObjectnessMeasureImageFilter.h vtkVmtk/Segmentation/vtkvmtkPolyDataPotentialFit.cxx vtkVmtk/Segmentation/vtkvmtkPolyDataPotentialFit.h vtkVmtk/Segmentation/vtkvmtkRecursiveGaussian2DImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkRecursiveGaussian2DImageFilter.h vtkVmtk/Segmentation/vtkvmtkRecursiveGaussianImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkRecursiveGaussianImageFilter.h vtkVmtk/Segmentation/vtkvmtkSatoVesselnessMeasureImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkSatoVesselnessMeasureImageFilter.h vtkVmtk/Segmentation/vtkvmtkSigmoidImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkSigmoidImageFilter.h vtkVmtk/Segmentation/vtkvmtkThresholdSegmentationLevelSetImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkThresholdSegmentationLevelSetImageFilter.h vtkVmtk/Segmentation/vtkvmtkUpwindGradientMagnitudeImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkUpwindGradientMagnitudeImageFilter.h vtkVmtk/Segmentation/vtkvmtkVesselEnhancingDiffusion3DImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkVesselEnhancingDiffusion3DImageFilter.h vtkVmtk/Segmentation/vtkvmtkVesselEnhancingDiffusionImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkVesselEnhancingDiffusionImageFilter.h vtkVmtk/Segmentation/vtkvmtkVesselnessMeasureImageFilter.cxx vtkVmtk/Segmentation/vtkvmtkVesselnessMeasureImageFilter.h Copyright: Luca Antiga, David Steinman. notices for more information License: UNKNOWN FIXME Files: CMakeInput/VMTKConfig.cmake.in CMakeInput/VMTKUse.cmake.in CMakeLists.txt PypeS/CMakeLists.txt PypeS/pypes.py PypeS/pypetest.py PypeS/pypetestrunner.py README SuperBuild.cmake __init__.py.in debian/TODO debian/compat debian/control debian/libvmtk-dev.lintian-overrides debian/libvmtk1.0.lintian-overrides debian/python-vmtk.lintian-overrides debian/rules debian/source/format debian/vmtk.1 debian/vmtk.lintian-overrides debian/watch distribution/CMakeLists.txt distribution/bundle/CustomVolumeIcon.icns distribution/bundle/vmtk-startup distribution/bundle/vmtk.icns distribution/nsis/mingw-postinst.bat distribution/nsis/postinst.bat distribution/nsis/vmtk-startup.bat distribution/scripts/getbuildvmtk.py vmtk.py vmtkApps/CerebralAneurysms/ParentVesselReconstruction/clipvoronoidiagram.py vmtkApps/CerebralAneurysms/ParentVesselReconstruction/paralleltransportvoronoidiagram.py vmtkApps/CerebralAneurysms/ParentVesselReconstruction/patchandinterpolatecenterlines.py vmtkScripts/CMakeLists.txt vmtkScripts/contrib/CMakeLists.txt vmtkScripts/contrib/vmtkcontribscripts.py vmtkScripts/contrib/vmtkentityrenumber.py vmtkScripts/contrib/vmtkmeshmerge.py vmtkScripts/contrib/vmtksurfaceextractinnercylinder.py vmtkScripts/contrib/vmtkthreshold.py vmtkScripts/vmtkimagecompare.py vmtkScripts/vmtkmeshcompare.py vmtkScripts/vmtkscripts.py vmtkScripts/vmtksurfacecompare.py vtkVmtk/CMakeLists.txt vtkVmtk/CMakeOptions.cmake vtkVmtk/Common/CMakeLists.txt vtkVmtk/ComputationalGeometry/CMakeLists.txt vtkVmtk/Contrib/CMakeLists.txt vtkVmtk/Contrib/vtkvmtkcontrib.py vtkVmtk/DifferentialGeometry/CMakeLists.txt vtkVmtk/IO/CMakeLists.txt vtkVmtk/Misc/CMakeLists.txt vtkVmtk/Misc/vtkvmtkCurvedMPRImageFilter.cxx vtkVmtk/Misc/vtkvmtkCurvedMPRImageFilter.h vtkVmtk/Rendering/CMakeLists.txt vtkVmtk/Segmentation/CMakeLists.txt vtkVmtk/Segmentation/itkVesselEnhancingDiffusion3DImageFilter.h vtkVmtk/Segmentation/itkVesselEnhancingDiffusion3DImageFilter.txx vtkVmtk/Utilities/CMakeLists.txt vtkVmtk/Utilities/Doxygen/CMakeLists.txt vtkVmtk/Utilities/Doxygen/doc_cleanhtml.pl vtkVmtk/Utilities/Doxygen/doc_header2doxygen.pl vtkVmtk/Utilities/Doxygen/doc_mainpage.dox vtkVmtk/Utilities/Doxygen/doc_makeall.sh.in vtkVmtk/Utilities/Doxygen/doc_rmpath.pl vtkVmtk/Utilities/Doxygen/doxyfile.in vtkVmtk/Utilities/Doxygen/doxygen.css vtkVmtk/Utilities/OpenNL/CMakeLists.txt vtkVmtk/Utilities/Stellar_1.0/CMakeLists.txt vtkVmtk/Utilities/Stellar_1.0/EXAMPLE_CONFIG vtkVmtk/Utilities/Stellar_1.0/house2.ele vtkVmtk/Utilities/Stellar_1.0/house2.node vtkVmtk/Utilities/Stellar_1.0/makefile vtkVmtk/Utilities/Stellar_1.0/meshconvert.py vtkVmtk/Utilities/Stellar_1.0/src/Starbase.h vtkVmtk/Utilities/Stellar_1.0/src/Stellar.c vtkVmtk/Utilities/Stellar_1.0/src/anisotropy.c vtkVmtk/Utilities/Stellar_1.0/src/arraypoolstack.c vtkVmtk/Utilities/Stellar_1.0/src/classify.c vtkVmtk/Utilities/Stellar_1.0/src/improve.c vtkVmtk/Utilities/Stellar_1.0/src/insertion.c vtkVmtk/Utilities/Stellar_1.0/src/interact.c vtkVmtk/Utilities/Stellar_1.0/src/journal.c vtkVmtk/Utilities/Stellar_1.0/src/main.c vtkVmtk/Utilities/Stellar_1.0/src/output.c vtkVmtk/Utilities/Stellar_1.0/src/print.c vtkVmtk/Utilities/Stellar_1.0/src/quadric.c vtkVmtk/Utilities/Stellar_1.0/src/quality.c vtkVmtk/Utilities/Stellar_1.0/src/size.c vtkVmtk/Utilities/Stellar_1.0/src/smoothing.c vtkVmtk/Utilities/Stellar_1.0/src/topological.c vtkVmtk/Utilities/Stellar_1.0/src/vector.c vtkVmtk/Utilities/tetgen1.4.3/CMakeLists.txt vtkVmtk/Utilities/tetgen1.4.3/example.poly vtkVmtk/Utilities/tetgen1.4.3/makefile vtkVmtk/Utilities/tetgen1.4.3/predicates.cxx vtkVmtk/Utilities/vtkvmtkITK/CMakeLists.txt vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKConfig.cmake.in vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKConfigure.h.in vtkVmtk/Wrapping/JavaDependencies.cmake.in vtkVmtk/Wrapping/Tcl/MakePackages.tcl vtkVmtk/Wrapping/vtkWrapperInit.data.in vtkVmtk/vtkvmtk.py vtkVmtk/vtkvmtkConfigure.h.in Copyright: *No copyright* License: UNKNOWN FIXME Files: vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITK.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesReader.cxx vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesReader.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesScalarReader.cxx vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKArchetypeImageSeriesScalarReader.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilter.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilter2DFF.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterF2F.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterF3F3.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterFF.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterFUL.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterSS.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterULUL.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterUSUL.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterUSUS.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageWriter.cxx vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageWriter.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKUtility.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKWin32Header.h Copyright: Brigham and Women's Hospital (BWH) License: UNKNOWN FIXME Files: vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementFunction.h vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementFunction.txx vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementImageFilter.h vtkVmtk/Segmentation/itkAnisotropicDiffusionVesselEnhancementImageFilter.txx vtkVmtk/Segmentation/itkFastMarchingDirectionalFreezeImageFilter.h vtkVmtk/Segmentation/itkFastMarchingDirectionalFreezeImageFilter.txx vtkVmtk/Segmentation/itkFastMarchingUpwindGradientImageFilter.h vtkVmtk/Segmentation/itkFastMarchingUpwindGradientImageFilter.txx vtkVmtk/Segmentation/itkHessianSmoothed3DToVesselnessMeasureImageFilter.h vtkVmtk/Segmentation/itkHessianSmoothed3DToVesselnessMeasureImageFilter.txx vtkVmtk/Segmentation/itkHessianToObjectnessMeasureImageFilter.h vtkVmtk/Segmentation/itkHessianToObjectnessMeasureImageFilter.txx vtkVmtk/Segmentation/itkMultiScaleHessianBasedMeasureImageFilter.h vtkVmtk/Segmentation/itkMultiScaleHessianBasedMeasureImageFilter.txx vtkVmtk/Segmentation/itkSymmetricEigenVectorAnalysisImageFilter.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterSF.h vtkVmtk/Utilities/vtkvmtkITK/vtkvmtkITKImageToImageFilterSUL.h Copyright: Insight Software Consortium. notices for more information License: UNKNOWN FIXME Files: vtkVmtk/Common/vtkvmtkWin32Header.h vtkVmtk/Misc/vtkvmtkStaticTemporalInterpolatedVelocityField.cxx vtkVmtk/Misc/vtkvmtkStaticTemporalStreamTracer.cxx Copyright: Ken Martin, Will Schroeder, Bill Lorensen License: UNKNOWN FIXME Files: vtkVmtk/ComputationalGeometry/vtkvmtkAppendFilter.h vtkVmtk/Misc/vtkvmtkStaticTemporalInterpolatedVelocityField.h vtkVmtk/Misc/vtkvmtkStaticTemporalStreamTracer.h Copyright: Ken Martin, Will Schroeder, Bill Lorensen Luca Antiga, David Steinman. notices for more information License: UNKNOWN FIXME Files: vtkVmtk/Utilities/OpenNL/nl.h vtkVmtk/Utilities/OpenNL/nl_single_file.c Copyright: 2004-2010, Bruno Levy HOLDER OR CONTRIBUTORS BE HOLDERS AND CONTRIBUTORS "AS IS" License: BSD (3 clause) FIXME Files: vtkVmtk/DifferentialGeometry/vtkvmtkDirichletBoundaryConditions.h vtkVmtk/DifferentialGeometry/vtkvmtkDoubleVector.cxx Copyright: Luca Antiga Luca Antiga, David Steinman. notices for more information License: UNKNOWN FIXME Files: vtkVmtk/Utilities/Stellar_1.0/src/Starbase.c Copyright: 1995-1998, */ 1995-1998, Jonathan Richard Shewchuk\n"); 2006-2008, Bryan Klingner\n"); HOLDERS AND CONTRIBUTORS "AS */ License: BSD (3 clause) FIXME Files: vtkVmtk/Utilities/Stellar_1.0/src/showme.c Copyright: 1995-1996, 1998 */ 1996, 1998 Jonathan Richard Shewchuk\n"); HOLDERS AND CONTRIBUTORS "AS */ License: BSD (3 clause) FIXME Files: vtkVmtk/Utilities/Stellar_1.0/src/top.c Copyright: 2006-2008, Bryan Klingner */ HOLDERS AND CONTRIBUTORS "AS */ License: BSD (3 clause) FIXME Files: PypeS/LICENCE Copyright: 2004-2011, Luca Antiga, David Steinman HOLDERS AND CONTRIBUTORS License: BSD (3 clause) FIXME Files: vtkVmtk/Utilities/tetgen1.4.3/LICENSE Copyright: 2002, 2004-2006, HOLDERS BE LIABLE FOR ANY OF OWNER License: MIT/X11 (BSD like) FIXME Files: Copyright.txt Copyright: 1995-1998, */ 2001-2010, 2002, 2004-2006, 2004-2010, Bruno Levy 2004-2011, Luca Antiga, David Steinman HOLDERS AND CONTRIBUTORS HOLDERS AND CONTRIBUTORS "AS */ HOLDERS AND CONTRIBUTORS "AS IS" HOLDERS AND CONTRIBUTORS "AS IS" AND OF [yyyy License: PSF-2 Apache (v2.0) BSD (3 clause) MIT/X11 (BSD like) GPL FIXME Files: vtkVmtk/Utilities/tetgen1.4.3/tetgen.cxx Copyright: 2002, - 2009\n"); 2002--2009, // bounded by faces in 'starlist'. // notices. // rewind back to adjtet License: UNKNOWN FIXME Files: vtkVmtk/Utilities/tetgen1.4.3/tetgen.h Copyright: 2002--2009, // notices. // License: UNKNOWN FIXME Files: distribution/nsis/vmtk-icon.tiff Copyright: Apple, Inc., 2010 License: UNKNOWN FIXME Files: LICENSE Copyright: 2004-2012, Luca Antiga, David Steinman License: UNKNOWN FIXME Files: PypeS/pypepad.py Copyright: Luca Antiga, David Steinman. Luca Antiga, David Steinman. *\n') notices for more information License: UNKNOWN FIXME Files: distribution/bundle/Info.plist.in Copyright: 2004-2009, Luca Antiga, David Steinman License: UNKNOWN FIXME Files: vtkVmtk/Utilities/tetgen1.4.3/README Copyright: notices stated in the file LICENSE License: UNKNOWN FIXME debian/rules0000755000000000000000000000413212252316662010253 0ustar #!/usr/bin/make -f include /usr/share/cdbs/1/rules/debhelper.mk include /usr/share/cdbs/1/class/cmake.mk PYVER = $(shell pyversions -dv) CFLAGS=-g -Wall -fPIC CXXFLAGS=-g -Wall -fPIC ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS))) CFLAGS += -O0 CXXFLAGS += -O0 else CFLAGS += -O2 CXXFLAGS += -O2 endif DEB_CMAKE_EXTRA_FLAGS= \ -D VMTK_MINIMAL_INSTALL:BOOL=ON \ -D VMTK_WITH_LIBRARY_VERSION:BOOL=ON \ -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON \ -D BUILD_SHARED_LIBS:BOOL=ON \ -D CMAKE_SKIP_RPATH:BOOL=ON \ -D VTK_DIR:PATH=/usr/lib/vtk-5.8 \ -D ITK_DIR:PATH=/usr/lib/InsightToolkit \ -D GDCM_DIR:PATH=/usr/lib/gdcm-2.2 \ -D VTK_VMTK_WRAP_PYTHON:BOOL=ON \ -D VTK_VMTK_WRAP_TCL:BOOL=OFF \ -D VTK_VMTK_BUILD_TETGEN:BOOL=ON \ -D BUILD_DOCUMENTATION:BOOL=OFF \ -D CMAKE_BUILD_TYPE:STRING=RelWithDebInfo \ -D CMAKE_INSTALL_PREFIX:PATH=/usr \ -D VTK_VMTK_CONTRIB:BOOL=ON \ -D VMTK_CONTRIB_SCRIPTS:BOOL=ON \ -D USE_SYSTEM_ITK:BOOL=ON \ -D USE_SYSTEM_VTK:BOOL=ON \ -D VMTK_USE_SUPERBUILD:BOOL=OFF \ -D VMTK_SCRIPTS_ENABLED:BOOL=ON \ .. install/libvmtk1.0:: dh_install -p$(cdbs_curpkg) \ `find debian/tmp/usr/lib/vmtk/ -name "lib*.so.*" | grep -v -E "(Python|TCL)"` usr/lib install/libvmtk-dev:: dh_install -p$(cdbs_curpkg) debian/tmp/usr/include/vmtk usr/include dh_install -p$(cdbs_curpkg) \ `find debian/tmp/usr/lib/vmtk/ -name "lib*.so" | grep -v -E "(Python|TCL)"` usr/lib install/python-vmtk:: dh_install -p$(cdbs_curpkg) debian/tmp/usr/lib/vmtk/*PythonD.* usr/lib if [ $(PYVER) = "2.6" -o $(PYVER) = "2.7" ]; then \ dh_install -p$(cdbs_curpkg) -X.pyc \ debian/tmp/usr/lib/vmtk/vmtk usr/lib/python$(PYVER)/dist-packages; \ else \ dh_install -p$(cdbs_curpkg) -X.pyc \ debian/tmp/usr/lib/vmtk/vmtk usr/lib/python$(PYVER)/site-packages; \ fi dh_python2 -p$(cdbs_curpkg) install/vmtk:: dh_install -p$(cdbs_curpkg) debian/tmp/usr/bin/vmtk usr/bin dh_installman -p$(cdbs_curpkg) debian/vmtk.1 USCAN_DESTDIR := $(CURDIR) get-orig-source: uscan --force-download --verbose --destdir $(USCAN_DESTDIR) \ --download-version $(DEB_UPSTREAM_VERSION) \ --upstream-version $(DEB_UPSTREAM_VERSION) debian/libvmtk-dev.lintian-overrides0000644000000000000000000000004312252316662014774 0ustar libvmtk-dev: no-upstream-changelog debian/python-vmtk.lintian-overrides0000644000000000000000000001314112252316662015053 0ustar python-vmtk: package-name-doesnt-match-sonames libvtkvmtkCommonPythonD1.0 libvtkvmtkComputationalGeometryPythonD1.0 libvtkvmtkContribPythonD1.0 libvtkvmtkDifferentialGeometryPythonD1.0 libvtkvmtkIOPythonD1.0 libvtkvmtkITKPythonD1.0 libvtkvmtkMiscPythonD1.0 libvtkvmtkRenderingPythonD1.0 libvtkvmtkSegmentationPythonD1.0 python-vmtk: no-upstream-changelog python-vmtk: hardening-no-stackprotector usr/lib/libvtkvmtkCommonPythonD.so.1.0.1 python-vmtk: hardening-no-relro usr/lib/libvtkvmtkCommonPythonD.so.1.0.1 python-vmtk: spelling-error-in-binary usr/lib/libvtkvmtkComputationalGeometryPythonD.so.1.0.1 specifed specified python-vmtk: hardening-no-stackprotector usr/lib/libvtkvmtkComputationalGeometryPythonD.so.1.0.1 python-vmtk: hardening-no-relro usr/lib/libvtkvmtkComputationalGeometryPythonD.so.1.0.1 python-vmtk: hardening-no-stackprotector usr/lib/libvtkvmtkContribPythonD.so.1.0.1 python-vmtk: hardening-no-relro usr/lib/libvtkvmtkContribPythonD.so.1.0.1 python-vmtk: hardening-no-stackprotector usr/lib/libvtkvmtkDifferentialGeometryPythonD.so.1.0.1 python-vmtk: hardening-no-relro usr/lib/libvtkvmtkDifferentialGeometryPythonD.so.1.0.1 python-vmtk: hardening-no-stackprotector usr/lib/libvtkvmtkIOPythonD.so.1.0.1 python-vmtk: hardening-no-relro usr/lib/libvtkvmtkIOPythonD.so.1.0.1 python-vmtk: hardening-no-stackprotector usr/lib/libvtkvmtkITKPythonD.so.1.0.1 python-vmtk: hardening-no-fortify-functions usr/lib/libvtkvmtkITKPythonD.so.1.0.1 python-vmtk: hardening-no-relro usr/lib/libvtkvmtkITKPythonD.so.1.0.1 python-vmtk: hardening-no-stackprotector usr/lib/libvtkvmtkMiscPythonD.so.1.0.1 python-vmtk: hardening-no-relro usr/lib/libvtkvmtkMiscPythonD.so.1.0.1 python-vmtk: hardening-no-stackprotector usr/lib/libvtkvmtkRenderingPythonD.so.1.0.1 python-vmtk: hardening-no-relro usr/lib/libvtkvmtkRenderingPythonD.so.1.0.1 python-vmtk: hardening-no-stackprotector usr/lib/libvtkvmtkSegmentationPythonD.so.1.0.1 python-vmtk: hardening-no-fortify-functions usr/lib/libvtkvmtkSegmentationPythonD.so.1.0.1 python-vmtk: hardening-no-relro usr/lib/libvtkvmtkSegmentationPythonD.so.1.0.1 python-vmtk: hardening-no-stackprotector usr/lib/pyshared/python2.7/vmtk/libvtkvmtkCommonPython.so python-vmtk: hardening-no-relro usr/lib/pyshared/python2.7/vmtk/libvtkvmtkCommonPython.so python-vmtk: hardening-no-stackprotector usr/lib/pyshared/python2.7/vmtk/libvtkvmtkComputationalGeometryPython.so python-vmtk: hardening-no-relro usr/lib/pyshared/python2.7/vmtk/libvtkvmtkComputationalGeometryPython.so python-vmtk: hardening-no-stackprotector usr/lib/pyshared/python2.7/vmtk/libvtkvmtkContribPython.so python-vmtk: hardening-no-relro usr/lib/pyshared/python2.7/vmtk/libvtkvmtkContribPython.so python-vmtk: hardening-no-stackprotector usr/lib/pyshared/python2.7/vmtk/libvtkvmtkDifferentialGeometryPython.so python-vmtk: hardening-no-relro usr/lib/pyshared/python2.7/vmtk/libvtkvmtkDifferentialGeometryPython.so python-vmtk: hardening-no-stackprotector usr/lib/pyshared/python2.7/vmtk/libvtkvmtkIOPython.so python-vmtk: hardening-no-relro usr/lib/pyshared/python2.7/vmtk/libvtkvmtkIOPython.so python-vmtk: hardening-no-stackprotector usr/lib/pyshared/python2.7/vmtk/libvtkvmtkITKPython.so python-vmtk: hardening-no-relro usr/lib/pyshared/python2.7/vmtk/libvtkvmtkITKPython.so python-vmtk: hardening-no-stackprotector usr/lib/pyshared/python2.7/vmtk/libvtkvmtkMiscPython.so python-vmtk: hardening-no-relro usr/lib/pyshared/python2.7/vmtk/libvtkvmtkMiscPython.so python-vmtk: hardening-no-stackprotector usr/lib/pyshared/python2.7/vmtk/libvtkvmtkRenderingPython.so python-vmtk: hardening-no-relro usr/lib/pyshared/python2.7/vmtk/libvtkvmtkRenderingPython.so python-vmtk: hardening-no-stackprotector usr/lib/pyshared/python2.7/vmtk/libvtkvmtkSegmentationPython.so python-vmtk: hardening-no-relro usr/lib/pyshared/python2.7/vmtk/libvtkvmtkSegmentationPython.so python-vmtk: non-dev-pkg-with-shlib-symlink usr/lib/libvtkvmtkMiscPythonD.so.1.0.1 usr/lib/libvtkvmtkMiscPythonD.so python-vmtk: non-dev-pkg-with-shlib-symlink usr/lib/libvtkvmtkDifferentialGeometryPythonD.so.1.0.1 usr/lib/libvtkvmtkDifferentialGeometryPythonD.so python-vmtk: non-dev-pkg-with-shlib-symlink usr/lib/libvtkvmtkITKPythonD.so.1.0.1 usr/lib/libvtkvmtkITKPythonD.so python-vmtk: non-dev-pkg-with-shlib-symlink usr/lib/libvtkvmtkCommonPythonD.so.1.0.1 usr/lib/libvtkvmtkCommonPythonD.so python-vmtk: non-dev-pkg-with-shlib-symlink usr/lib/libvtkvmtkRenderingPythonD.so.1.0.1 usr/lib/libvtkvmtkRenderingPythonD.so python-vmtk: non-dev-pkg-with-shlib-symlink usr/lib/libvtkvmtkIOPythonD.so.1.0.1 usr/lib/libvtkvmtkIOPythonD.so python-vmtk: non-dev-pkg-with-shlib-symlink usr/lib/libvtkvmtkComputationalGeometryPythonD.so.1.0.1 usr/lib/libvtkvmtkComputationalGeometryPythonD.so python-vmtk: non-dev-pkg-with-shlib-symlink usr/lib/libvtkvmtkSegmentationPythonD.so.1.0.1 usr/lib/libvtkvmtkSegmentationPythonD.so python-vmtk: non-dev-pkg-with-shlib-symlink usr/lib/libvtkvmtkContribPythonD.so.1.0.1 usr/lib/libvtkvmtkContribPythonD.so python-vmtk: no-symbols-control-file usr/lib/libvtkvmtkMiscPythonD.so.1.0.1 python-vmtk: no-symbols-control-file usr/lib/libvtkvmtkDifferentialGeometryPythonD.so.1.0.1 python-vmtk: no-symbols-control-file usr/lib/libvtkvmtkITKPythonD.so.1.0.1 python-vmtk: no-symbols-control-file usr/lib/libvtkvmtkCommonPythonD.so.1.0.1 python-vmtk: no-symbols-control-file usr/lib/libvtkvmtkRenderingPythonD.so.1.0.1 python-vmtk: no-symbols-control-file usr/lib/libvtkvmtkIOPythonD.so.1.0.1 python-vmtk: no-symbols-control-file usr/lib/libvtkvmtkComputationalGeometryPythonD.so.1.0.1 python-vmtk: no-symbols-control-file usr/lib/libvtkvmtkSegmentationPythonD.so.1.0.1 python-vmtk: no-symbols-control-file usr/lib/libvtkvmtkContribPythonD.so.1.0.1 debian/compat0000644000000000000000000000000212252316662010371 0ustar 7 debian/changelog0000644000000000000000000000757212252316662011060 0ustar vmtk (1.0.1-3) unstable; urgency=low * debian/control: - Remove DM-Upload-Allowed field. - Remove libgdcm2-dev from Build-Depends (closes: #731920). - Use canonical URIs for Vcs-* fields. - Bump Standards-Version to 3.9.4 (no changes needed). - Replace python-support with dh-python. - Bump minimum required cdbs package version to 0.4.90~. - Bump minimum required python-dev package version to 2.6.6-3~. - Remove all XB-Python-Version lines. - Replace XS-Python-Version with X-Python-Version. * debian/rules: Replace call on dh_pysupport with dh_python2. -- Johannes Ring Wed, 11 Dec 2013 11:52:08 +0100 vmtk (1.0.1-2) unstable; urgency=low * Build tetgen with -O1 instead of -O0 to work around a build failure on armhf. See LP: #1049614. * debian/control: - Use unversioned libtiff-dev instead of libtiff4-dev (closes: #682714). -- Johannes Ring Thu, 01 Aug 2013 10:15:39 +0200 vmtk (1.0.1-1) unstable; urgency=low * New upstream release. * debian/control: Replace libvmtk0.9 with libvmtk1.0. * debian/rules: - Update VTK_DIR to vtk 5.8 (closes: #676596). - Turn on USE_SYSTEM_{VTK,ITK} since default is now to download these. - Rename install/libvmtk0.9 target to install/libvtmk1.0. * Remove patch (fixed upstream). * Update lintian overrides. * Switch to machine-readable format in debian/copyright. -- Johannes Ring Fri, 08 Jun 2012 08:07:49 +0200 vmtk (0.9.0-7) unstable; urgency=low * debian/control: - Replace libpng12-dev with libpng-dev in Build-Depends (closes: #662541). - Add libvtkgdcm2-dev, libvtk5-qt4-dev and libvtk-java in Build-Depends. - Bump Standards-Versions to 3.9.3 (no changes needed). * debian/rules: - Update GDCM_DIR to /usr/lib/gdcm-2.2. -- Johannes Ring Wed, 21 Mar 2012 13:15:36 +0100 vmtk (0.9.0-6) unstable; urgency=low * Add patch to fix problem with Python.h not found (closes: 650586). -- Johannes Ring Mon, 19 Dec 2011 11:18:55 +0100 vmtk (0.9.0-5) unstable; urgency=low * debian/rules: Enable contrib scripts. * Add more lintian overrides. -- Johannes Ring Mon, 05 Sep 2011 13:34:30 +0200 vmtk (0.9.0-4) unstable; urgency=low * Make package autobuildable: - Set "XS-Autobuild: yes" in debian/control. - Add note in debian/copyright. * debian/control: - Replace libjpeg62-dev with libjpeg-dev in Build-Depends. - Bump Standards-Version to 3.9.2 (no changes needed). -- Johannes Ring Tue, 19 Jul 2011 15:27:19 +0200 vmtk (0.9.0-3) unstable; urgency=low * Update/rebuild to use vtk 5.6 (closes: 621070): - Set VTK_DIR to /usr/lib/vtk-5.6 in DEB_CMAKE_EXTRA_FLAGS in debian/rules. * debian/control: - Remove old Conflicts, Replaces, and Provides fields for all binary packages. - Bump Standards-Version to 3.9.1 (no changes needed). -- Johannes Ring Wed, 06 Apr 2011 20:31:24 +0200 vmtk (0.9.0-2) unstable; urgency=low * debian/rules: - Enable building of contrib classes. Update lintian-overrides accordingly. - Minor fix for Python 2.7 for binary package python-vmtk. * debian/control: Set XS-Python-Version to ">= 2.3" (closes: #606857). * debian/copyright: Remove reference to deprecated BSD license file and add full license text. -- Johannes Ring Mon, 14 Feb 2011 13:54:35 +0100 vmtk (0.9.0-1) unstable; urgency=low * New upstream release. * debian/control: - Add DM-Upload-Allowed: yes. - Bump XS-Python-Version field to 2.6. * debian/rules: Use uscan in get-orig-source target. -- Johannes Ring Fri, 06 Aug 2010 14:34:09 +0200 vmtk (0.9~bzr276-1) unstable; urgency=low * Initial release (Closes: #584222) -- Johannes Ring Thu, 03 Jun 2010 19:11:14 +0200 debian/control0000644000000000000000000000463512252316662010606 0ustar Source: vmtk Homepage: http://www.vmtk.org Section: non-free/science Priority: optional Maintainer: Debian Science Team Uploaders: Johannes Ring Build-Depends: cdbs (>= 0.4.90~), debhelper (>= 7), cmake, dh-python, python-dev (>= 2.6.6-3~), libvtk5-dev, python-vtk, libinsighttoolkit3-dev | libinsighttoolkit-dev, libjpeg-dev, libtiff-dev, libfreetype6-dev, libxext-dev, libpng-dev, libexpat1-dev, uuid-dev, libvtkgdcm2-dev, libopenjpeg-dev, libssl-dev, libvtk5-qt4-dev, libvtk-java X-Python-Version: >= 2.3 Standards-Version: 3.9.4 Vcs-Svn: svn://anonscm.debian.org/debian-science/packages/vmtk/trunk Vcs-Browser: http://anonscm.debian.org/viewvc/debian-science/packages/vmtk/trunk/ XS-Autobuild: yes Package: libvmtk1.0 Section: non-free/libs Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Suggests: libvmtk-dev Description: runtime libraries for vmtk The Vascular Modeling Toolkit is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels. . This package contains the shared runtime libraries. Package: python-vmtk Section: non-free/python Architecture: any Depends: libvmtk1.0 (= ${binary:Version}), ${python:Depends}, ${shlibs:Depends}, ${misc:Depends} Description: Python interface for vmtk The Vascular Modeling Toolkit is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels. . This package provides the Python interface for vmtk. Package: libvmtk-dev Section: non-free/libdevel Architecture: any Depends: libvmtk1.0 (= ${binary:Version}), ${misc:Depends} Description: shared links and header files for vmtk The Vascular Modeling Toolkit is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels. . This package contains header files and shared library links. Package: vmtk Architecture: all Depends: python, python-tk, python-vmtk (>= ${source:Version}), ${misc:Depends} Description: the Vascular Modeling Toolkit The Vascular Modeling Toolkit is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels.