altree-v1.3.1/0000755000175000017500000000000012252703410013310 5ustar vdanjeanvdanjeanaltree-v1.3.1/progs/0000755000175000017500000000000012252703410014442 5ustar vdanjeanvdanjeanaltree-v1.3.1/progs/altree-convert0000755000175000017500000005442212043315246017335 0ustar vdanjeanvdanjean#! /usr/bin/perl # This program trasforms output files from different haplotype reconstructions programs (Phase, FAMHAP, ...) into input files for phylogeny reconstruction programs (PAUP or Phylip) use strict; use diagnostics; use warnings; use Getopt::Long; # qw(:config permute); use Pod::Usage; #use Getopt::Std; our($opt_h, $opt_r, $opt_i, $opt_j, $opt_o, $opt_t, $opt_p, $opt_c, $opt_q, $opt_s); our $VERSION; $VERSION = sprintf "0.%03d", q$Revision: 290 $ =~ /(\d+)/g; ##### FONCTIONS ANNEXES GLOBALES POUR TOUS LES INPUTS #### sub print_hash_ind { my($hash_ind)=shift; my($clef); print "AFFICHAGE\n"; foreach $clef (keys %{$hash_ind}) { print $clef ," ", $hash_ind->{$clef}->{"statut"}, " ", $hash_ind->{$clef}->{"haplo1"}, " ", $hash_ind->{$clef}->{"haplo2"}, "\n"; } } #Verification that # - the hash contains 2 haplo per individual # - the statut is defined sub VerifyHashInd { my($hash_ind)=shift; my($nb_loci)=shift; my($ind); foreach $ind (keys %{$hash_ind}) { if ((!exists $hash_ind->{$ind}->{"statut"}) && (!$opt_j)) { die "Statut are not available in the input file: You should either provide a second input file (option -j ) or add it in the input file of phase and use the -c-1 option of phase"; } elsif ((!exists $hash_ind->{$ind}->{"haplo1"}) || (!exists $hash_ind->{$ind}->{"haplo2"})) { die "Undefined haplotypes for individual $ind\n"; } elsif ((length($hash_ind->{$ind}->{"haplo1"}) != $nb_loci) || (length($hash_ind->{$ind}->{"haplo2"}) != $nb_loci)) { my($long)=length($hash_ind->{$ind}->{"haplo1"}); die "$nb_loci, $long, Bad haplotype sequence length for individual: $ind\n"; } } } ############################ ##### READ PHASE OUTPUT ##### #Read information in the phase outfile (option -c) #The info are stored in a hash{num_ind}->{"info"} # (info=statut[if available], haplo1, haplo2) sub ReadPhase { my($file)=shift; # Do we have to read statut in INPUT1 or not (use INPUT2)? my($read_statut)=shift; my($mark)=0; my(%hash_ind); my($passe_par_la)=0; #indicates if a section is read in the input file my($ligne, $nb_loci); my($file_has_statut)=0; #=1 when we are sure that info about statut are in the file open(INPUT1, '<', $file) || die "Unable to open '$file': $!\n"; while ($ligne=) { chomp($ligne); if ($ligne =~ /^BEGIN (OUTFILE_LIST|BESTPAIRS1|INPUT_SUMMARY)$/) { if ($mark != 0) { die "Nested sections ! \n"; } if ($1 eq "OUTFILE_LIST") { $mark=2; } elsif ($1 eq "INPUT_SUMMARY") { $mark=3; } else { $mark=1; } if ($passe_par_la & (1<<($mark-1)) ) { die "Double section 'BEGIN $1' !\n"; } $passe_par_la |= (1<<($mark-1)); next; } if ($ligne =~ /^END (OUTFILE_LIST|BESTPAIRS1|INPUT_SUMMARY)$/) { if ($mark == 0) { die "Section $1 ends before start ! \n"; } $mark=0; next; } if ($mark==1) { my ($ligne2, $ligne3, $statut, $ind); if ($ligne !~ /^([01])\s+([0-9A-Za-z\#_-]+)$/) { print STDERR "Skipping strange line : $ligne\n"; } else { $statut=$1; $ind=$2; my $i; for ($i=1; $i<=2; $i++) { $ligne2=; chomp($ligne2); $ligne2 =~ tr/()[] //d; # faire aussi un s/(-1)/?/; $ligne2 =~ s/-1/?/g; $hash_ind{$ind}->{"haplo".$i}=$ligne2; } if ($read_statut) { $hash_ind{$ind}->{"statut"}=$statut; } } } if ($mark==2) { if ($ligne =~ / : p-value for testing cases vs controls$/) { $file_has_statut=1; } } if ($mark==3){ if ($ligne =~ /^Number of Loci: ([0-9]+)$/) { $nb_loci=$1; } } } close(INPUT1); if ($passe_par_la != 7) { print "PASSE PAR LA=$passe_par_la \n"; die "The program has either read too many sections or not enough!\n"; } if ($file_has_statut == 0 && $read_statut == 1) { die "Statut are not available in the input file: You should either provide a second input file (option -j ) or add it in the input file of phase and use the -c-1 option of phase" } if (%hash_ind) { #not empty return \%hash_ind, $nb_loci; } else { die "Error in reading Input 1: info have not been stored correctly in the hash. Check your input file?\n"; } } #To add statut info in the hash when it's not available in INPUT1 sub ReadStatut { my ($file)=shift; my ($hash_ind)=shift; my(@tableau, $ligne); open(INPUT2, '<', $file) || die "Unable to open '$file': $!\n"; while ($ligne=) { chomp($ligne); @tableau=split(/\s+/, $ligne); if (!exists($hash_ind->{$tableau[0]})) { die "This individual doesn't exist in $opt_i: $tableau[0] !\n"; } $hash_ind->{$tableau[0]}->{"statut"}=$tableau[1]; } close(INPUT2); my($ind); foreach $ind (keys %{$hash_ind}) { if (!exists($hash_ind->{$tableau[0]}->{"statut"})) { die "No statut was found for individual $ind !\n"; } } } ########################################## #### READ FAMHAP OUTPUT ################## #Read information in the FAMHAP outfile ( outfile=file1) #The info are stored in a hash{haploID}=haplotype_sequence sub ReadFAMHAPOutfile { my($file1)=shift; my($ligne, , $ligne2, @tableau, %hashHaploID); my($haplo, $HaploID); my($nb_loci, $nb_haplo); open(FAMHAPOUT, '<', $file1) || die "Unable to open '$file1': $!\n"; while ($ligne=) { chomp($ligne); if ($ligne =~ /^Selected loci:/) { chomp($ligne); @tableau=split(/\s+/, $ligne); $nb_loci=$#tableau-1; } if ($ligne =~ /HaploiD: ([0-9]+)/) { $HaploID=$1; @tableau=split(/\s+/, $ligne); $haplo=""; my($i); if (not defined $nb_loci) { die "Problem in the input file: nb_loci could not be read: $nb_loci\n"; } else { for ($i=0; $i<$nb_loci; $i++) { $haplo.=$tableau[$i]; # Je ne vérifie pas que les alleles font bien un seul # caractère (une seuk chiffre ou une seule lettre... } } #hash dont clef=HaploID, et valeur = la seq de l'haplotype if ($HaploID ne "") { $hashHaploID{$HaploID}=$haplo; #DEBUG print "haplo=$haplo, hashHaploID=$HaploID hashHaploID{haplo}= $hashHaploID{$HaploID}\n"; } else { die "Problem in the input file, HaploID could not be correctly read: $HaploID\n"; } } } close(FAMHAPOUT); return (\%hashHaploID, $nb_loci); } #Read information in the FAMHAP Hx_MOSTLIKELI (file2) #uses the hashHaploID sub ReadFAMHAPMostLikeli { my($file2)=shift; my($hashHaploID)=shift; my($ligne, $FT, $FID, $FNT, $MT, $MNT); my(%hash_ind); open(OUTHAPLO, '<', $file2) || die "Unable to open '$file2': $!\n"; my($index)=0; while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*FID\s+PID\s+HAPLO1\s+HAPLO2\s+HAPLO3\s+HAPLO4\s+LIKELIHOOD_WEIGHT/) { $index=1; next; } if ($index==1) { if ($ligne =~ /^\s*(\d+)\s+(.+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(.+)/) { $FID=$1; $FT=$3; $FNT=$4; $MT=$5; $MNT=$6; # print "hashHaploID3= $hashHaploID->{$3}\n"; $hash_ind{$FID."0"}->{"haplo1"}=$hashHaploID->{$FNT}; $hash_ind{$FID."0"}->{"haplo2"}=$hashHaploID->{$MNT}; $hash_ind{$FID."0"}->{"statut"}=0; $hash_ind{$FID."1"}->{"haplo1"}=$hashHaploID->{$FT}; $hash_ind{$FID."1"}->{"haplo2"}=$hashHaploID->{$MT}; $hash_ind{$FID."1"}->{"statut"}=1; } elsif ($ligne =~ /^$/) { next; } else { print "strange line $ligne\n"; } } } close(OUTHAPLO); return(\%hash_ind); } # call the different function involved in the reading of FAMHAP input file and storage of the infoin a hash{num_ind}->{"info"} (info=statut[if available], haplo1, haplo2) sub ReadFAMHAP { my($file1)=shift; my($file2)=shift; my($hashHaploID, $hash_ind); my($haplo); my($nb_loci); ($hashHaploID, $nb_loci)=ReadFAMHAPOutfile($file1); ($hash_ind)= ReadFAMHAPMostLikeli($file2, $hashHaploID); #print "nb_haplo= $nb_haplo, nb_loci=$nb_loci\n"; # foreach $haplo (keys %{$hashHaploID}) { # print "haplo: $haplo hash=$hashHaploID->{$haplo}\n"; # } # print_hash_ind($hash_ind); return($hash_ind, $nb_loci); } ########################################## #### DATA TRANSFO ######################## sub TransfoData { my($hash_ind)=shift; my($data_quali)=shift; my($j)=1; my($ind, %hash_haplo); foreach $ind (keys %{$hash_ind}) { if ($data_quali eq "quali") { if (($hash_ind->{$ind}->{"statut"} != 0) && ($hash_ind->{$ind}->{"statut"} !=1)) { die "Invalid disease statut for individual $ind: ", $hash_ind->{$ind}->{"statut"}, "\n"; } else { my($i); for ($i=1; $i<=2; $i++) { $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[$hash_ind->{$ind}->{"statut"}]++; $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[0]+=0; # moche mais pour eviter les non défini dans affichage $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[1]+=0; if (!exists $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[2]) { $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[2]=$j; $j++; } } } } else { # In this case, $hash_haplo is a hash with $haplo as keys and a # ref on a tab containing the quantitative values as values. for (my $i=1; $i<=2; $i++) { push (@{$hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->{"valeurs"}}, $hash_ind->{$ind}->{"statut"}); if (!exists $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->{"name"}) { $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->{"name"}=$j; $j++; } } } } my($nb_haplo); $nb_haplo=keys %hash_haplo; # print "Nb_haplo= $nb_haplo\n"; return \%hash_haplo, $nb_haplo; } ########################################### #### BUILDING OF DIFFERENT OUTPUT FILE #### #Affiche juste les haplo. Surtout pour debug sub AfficheHashHaplo { my($hash_haplo)=shift; my($haplo); foreach $haplo (keys %{$hash_haplo}) { printf "H%.3i_c%.3i_m%.3i\t%s\n", $hash_haplo->{$haplo}->[2],$hash_haplo->{$haplo}->[0], $hash_haplo->{$haplo}->[1], $haplo; # print "hash_haplo->{$haplo}->[1]", $hash_haplo->{$haplo}->[1], "\n"; } } # Prepare a file (correspond.txt) in which the number of cases and the number of controls are specified for each haplotype. sub MakeCorrespondanceFile { my($hash_haplo)=shift; my($file_corres)=shift; my $data_quali = shift; my $seuil = shift; my($haplo); open (CORRESP, '>', $file_corres) || die "Unable to open correspond.txt: $!\n"; my $hash_haplo_sorted; # ref on tab containing the haplotypes sorted on the number of individuals carrying them if ($data_quali eq "quali") { $hash_haplo_sorted = SortNbhaploQuali($hash_haplo, $seuil); } else { $hash_haplo_sorted = SortNbhaploQuanti($hash_haplo, $seuil); } # foreach $haplo (keys %{$hash_haplo}) { foreach $haplo (@{$hash_haplo_sorted}) { #new version with sorted sequences if ($data_quali eq "quali") { printf CORRESP "H%.3i\tm%.3i\tc%.3i\n", $hash_haplo->{$haplo}->[2],$hash_haplo->{$haplo}->[1], $hash_haplo->{$haplo}->[0]; } else { printf CORRESP "H%.3i\t", $hash_haplo->{$haplo}->{"name"}; foreach my $valeurs (@{$hash_haplo->{$haplo}->{"valeurs"}}) { print CORRESP "$valeurs\t"; } print CORRESP "\n"; } } close(CORRESP); } # Select and sort the haplotypes that will appear in the paup file and in the correspondance file. Does not work with phylip yet sub SortNbhaploQuali { my $hash_haplo = shift; my $seuil = shift; my @hash_haplo_sorted = sort { $hash_haplo->{$a}->[0]+$hash_haplo->{$a}->[1] <=> $hash_haplo->{$b}->[0]+$hash_haplo->{$b}->[1] } (grep { $hash_haplo->{$_}->[0]+$hash_haplo->{$_}->[1]>$seuil } (keys %{$hash_haplo})); return \@hash_haplo_sorted; } sub SortNbhaploQuanti { my $hash_haplo = shift; my $seuil =shift; my @hash_haplo_sorted = sort { $#$hash_haplo->{$a}->{"valeurs"} <=> $#$hash_haplo->{$b}->{"valeurs"} } (grep { $hash_haplo->{$_}->[0]+$hash_haplo->{$_}->[1]>$seuil } (keys %{$hash_haplo})); return \@hash_haplo_sorted; } # Read the opt_t and define the character to add to the ancestral sequence ($anc) and to the other haplotypes ($der). Also define the "format symbol for paup. sub ReadDataType { my($data_type)=shift; # my ($der, $anc); my($write_data_type); if ($data_type eq "DNA") { $write_data_type="ATGCU"; # $anc="G"; # $der="C"; } elsif ($data_type eq "NUM") { $write_data_type="0123456789"; # $anc="1"; # $der="0"; } else { die "Invalid data type specified in opt_t: $opt_t. You should use DNA or NUM\n"; } return ($write_data_type); # return ($anc, $der, $write_data_type); } #Build a PAUP OUTFILE sub BuildPAUP { my($file)=shift; my($hash_haplo)=shift; my($nb_haplo)=shift; my($nb_loci)=shift; my($data_type)=shift; my($file_corres)= shift; my $data_quali=shift; my $seuil = shift; #my($der, $anc); my($write_data_type); MakeCorrespondanceFile($hash_haplo, $file_corres, $data_quali, $seuil); #($anc, $der, $write_data_type)=ReadDataType($data_type); ($write_data_type)=ReadDataType($data_type); my $hash_haplo_sorted; if ($data_quali eq "quali") { $hash_haplo_sorted = SortNbhaploQuali($hash_haplo, $seuil); } else { $hash_haplo_sorted = SortNbhaploQuanti($hash_haplo, $seuil); } open(OUTPAUP, '>', $file) || die "Unable to open '$file': $!\n"; print OUTPAUP "#Nexus\n"; print OUTPAUP "Begin data;\n"; print OUTPAUP "dimension ntax=",$#$hash_haplo_sorted+1," nchar=", $nb_loci,";\n"; print OUTPAUP "format symbols=\"$write_data_type\" missing=?;\n"; print OUTPAUP "matrix\n"; my($haplo); # foreach $haplo (keys %{$hash_haplo}) { # printf OUTPAUP "H%.3i_m%.3i_c%.3i\t%s%s\n", $hash_haplo->{$haplo}->[2],$hash_haplo->{$haplo}->[1], $hash_haplo->{$haplo}->[0], $haplo, $der; # a modifier si je fais un deuxième fichier de sortie... foreach $haplo (@{$hash_haplo_sorted}) { if ($data_quali eq "quali") { printf OUTPAUP "H%.3i\t%s\n", $hash_haplo->{$haplo}->[2], $haplo;#, $der; } else { printf OUTPAUP "H%.3i\t%s\n", $hash_haplo->{$haplo}->{"name"}, $haplo; } } print OUTPAUP "H000_ancetre [add ancestral haplotype]\n";#$anc\n"; print OUTPAUP ";\n"; print OUTPAUP "end;\n"; print OUTPAUP "begin assumptions;\n"; print OUTPAUP "ancstates *anc vector = [add ancestral haplotype];\n"; print OUTPAUP "end;\n"; print OUTPAUP "begin paup;\n"; print OUTPAUP "set nowarnreset autoclose maxtrees = [2000] increase=[no - Auto AutoInc = 100] monitor = no taxlabels = full\n"; print OUTPAUP "root=lundberg warnroot=no opt=[deltran - acctran] ancstates=anc;\n"; print OUTPAUP "hsearch;\n"; print OUTPAUP "savetrees [from=1 to=1] file=[test.tree] root=yes format=altnexus;\n"; print OUTPAUP "cleartrees nowarn=yes;\n"; print OUTPAUP "gettrees rooted=yes file=[test.tree];\n"; print OUTPAUP "log file = [test.res.log] replace=[yes - no];\n"; print OUTPAUP "describetrees [all] /plot=[cladogram - phylogram] brlens=yes rootmethod=lundberg apolist=yes;\n"; print OUTPAUP "log stop;\n"; print OUTPAUP "end;\n"; print OUTPAUP "quit;\n"; print OUTPAUP "[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]\n"; close(OUTPAUP); } #Build a PHYLIP OUTFILE sub BuildPHYLIP { my ($file)=shift; my($hash_haplo)=shift; my($nb_haplo)=shift; my($nb_loci)=shift; my($data_type)=shift; my($file_corres)=shift; # my ($der, $anc); my($write_data_type); #### SI ON UTILISE PHYLIP? FAIRE UN TEST: on doit avoir du 0/1 ou du ATGCU... SInon, marche pas! MakeCorrespondanceFile($hash_haplo, $file_corres); # ($anc, $der, $write_data_type)=ReadDataType($data_type); ($write_data_type)=ReadDataType($data_type); open(OUTPHYLIP, '>', $file) || die "Unable to open '$file': $!\n"; print OUTPHYLIP "\t", $nb_haplo+1, "\t", $nb_loci+1, "\n"; my($haplo); foreach $haplo (keys %{$hash_haplo}) {#### SI ON UTILISE PHYLIP? FAIRE UN TEST: on doit avoir du 0/1 ou du ATGCU... SInon, marche pas! printf OUTPHYLIP "H%.3i%s\t%s\n", $hash_haplo->{$haplo}->[2]," ", $haplo;#, $der; } # print OUTPHYLIP "H000_anc ", "\t", "[ancestral sequence]\n";#$anc\n"; close(OUTPHYLIP); # print STDERR "Don't forget to prepare the ancestor file containing the ancestor sequence followed by the character $anc\n"; } ############################################ sub main { my($progname, $rec_program); my %options= ( "first-input-file" => \$opt_i, "second-input-file" => \$opt_j, "output-file" => \$opt_o, "case-control-output" => \$opt_c, "data-type" => \$opt_t, "phylo-prog" => \$opt_p, "reconstruct-prog" => \$opt_r, "data-quali" => \$opt_q, "nbind-threshold" => \$opt_s, ); #getopts('hr:i:j:o:t:p:'); GetOptions (\%options, "version", "short-help|h", "help", "man", "first-input-file|i=s", "second-input-file|j=s", "output-file|o=s", "case-control-output|c=s", "data-type|t=s", "phylo-prog|p=s", "reconstruct-prog|r=s", "data-quali|q=s", "nbind-threshold|s=i", ) or pod2usage(2); if (defined($options{"version"})) { print $0, " version ", $VERSION, "\n"; print "(Perl version ", $], ")\n"; exit 0; } if (defined($options{"short-help"})) { pod2usage(-exitstatus => 0, -verbose => 0); } if (defined($options{"help"})) { pod2usage(-exitstatus => 0, -verbose => 1); } if (defined($options{"man"})) { pod2usage(-exitstatus => 0, -verbose => 2); } # if ($opt_h) { # ($progname = $0) =~ s|^.*/([^/]*)$|$1|; # print STDERR "usage : $progname \n"; # print STDERR "\t-r Haplotype reconstruction program\n"; # print STDERR "\t-i Input file 1\n"; # print STDERR "\t[-j Input file 2]\n"; # print STDERR "\t-o Output file \n"; # print STDERR "\t-t Type of data: DNA (ATGCU) or NUM (0-9)\n"; # print STDERR "\t-p Phylogeny reconstruction program\n"; # print STDERR "\t-h: this help\n"; # exit (1); # } if ($opt_r){ $rec_program = $opt_r; } else { die "Name of the haplotype reconstruction program used missing: opt_r\n"; } if (!$opt_i) { # Principal outfile of haplotypic reconstruction program die "No input file\n"; } if (!$opt_o) { # Output file for a phylogeny reconstruction program die "No output file\n"; } if (!$opt_c) { # Output file for a phylogeny reconstruction program die "No case-control statut output file\n"; } my($phylo_program); if ($opt_p){ $phylo_program = $opt_p; } else { die "Name of the phylogeny reconstruction program used missing: opt_p\n"; } if (!$opt_t){ die "Type of data: opt_t (DNA or NUM) not specified!\n"; #il faudra peut-etre vérifier que les données sont bien du bon type??? } my $data_quali; if (! $opt_q){ die "Data quality: opt_q, (qualitative or quantitative) not specified!\n"; } if (not defined $opt_s){ die "Nb ind threshold: opt_s not specified!\n"; } my($hash_ind, $hash_statut, $hash_haplo); my($nb_haplo, $nb_loci); if ($rec_program =~ /^[Pp][Hh][Aa][Ss][Ee]$/) { ($hash_ind, $nb_loci)=ReadPhase($opt_i, !$opt_j); VerifyHashInd($hash_ind, $nb_loci); if ($opt_j) { ReadStatut($opt_j, $hash_ind); } } elsif ($rec_program =~ /^[Ff][Aa][Mm][Hh][Aa][Pp]$/) { if (!$opt_j) { die "No file H1_MOSTLIKELI or H0_MOSTLIKELI provided\n"; } else { ($hash_ind, $nb_loci)=ReadFAMHAP($opt_i, $opt_j); VerifyHashInd($hash_ind, $nb_loci); } } else { die "Unknown software. Check the -r option! \n"; } if ($opt_q =~ /^[Qq][Uu][Aa][Ll][Ii][Tt][Aa][Tt][Ii][Vv][Ee]$/) { $data_quali="quali"; } elsif ($opt_q =~ /^[Qq][Uu][Aa][Nn][Tt][Ii][Tt][Aa][Tt][Ii][Vv][Ee]$/) { $data_quali="quanti"; } else { die "Unknown data_qual. Check the -q option! \n"; } #print_hash_ind($hash_ind); ($hash_haplo, $nb_haplo)=TransfoData($hash_ind, $data_quali); # AfficheHashHaplo($hash_haplo); # pour verifier if ($phylo_program =~ /^[Pp][Aa][Uu][Pp]$/) { BuildPAUP($opt_o, $hash_haplo, $nb_haplo, $nb_loci, $opt_t, $opt_c, $data_quali, $opt_s) } elsif ($phylo_program =~ /^[Pp][Hh][Yy][Ll][Ii][Pp]$/) { BuildPHYLIP($opt_o, $hash_haplo, $nb_haplo, $nb_loci, $opt_t, $opt_c); } else { die "Unknown phylogeny software. Check the -p option! \n"; } } main; __END__ =head1 NAME altree-convert - Title... =head1 SYNOPSIS altree-convert [options] Options: --version program version --short-help|h brief help message --help help message with options descriptions --man full documentation --first-input-file|i input file 1 --second-input-file|j input file 2 (not mandatory) --output-file|o output file --case-control-output|c output containing the nb cases/controls --data-type|t DNA|NUM --phylo-prog|p PAUP|PHYLIP --reconstruct-prog|r PHASE|FAMHAP --data-quali|q Type of data: qualitative or quantitative --nbind-threshold|s Minimum number of individuals ecquired to keep an haplotype =head1 OPTIONS =over 8 =item B<--version> Print the program version and exits. =item B<--short-help> Print a brief help message and exits. =item B<--help> Print a help message with options descriptions and exits. =item B<--man> Prints the manual page and exits. =item B<--first-input-file|i> Input file 1 (output of the haplotype reconstruction program) =item B<--second-input-file|j> Input file 2 (second output of famhap or file containig the disease status) =item B<--output-file|o> Output file =item B<--case-control-output|c> Output file containing the number of cases and controls carrying each haplotype =item B<--data-type|t> C|C Type of data: DNA (ATGCU) or SNP (0-1) =item B<--phylo-prog|p> C|C Phylogeny reconstruction program =item B C Haplotype reconstruction program =item B C Type of data analyzed =item B Minimal number of individuals carrying an haplotype recquired to keep it for further analysis. If you want to keep all haplotypes, you must affect 0 to this variable =back =head1 DESCRIPTION B will read the given input file(s) and generate an input file for the phylogenetic reconstruction software paup or phylip/paml =cut altree-v1.3.1/progs/altree-add-S0000755000175000017500000003600512043315246016602 0ustar vdanjeanvdanjean#!/usr/bin/perl #Ce programme etiquette les haplotypes malades (ajout d'un G) ou témoins (ajout d'un C), en fonction d'un seuil de malade et témoins qui le porte. #Le programme prend en entrée un fichier .paup, et redonne un autre .paup use strict; use diagnostics; use warnings; use Getopt::Long; # qw(:config permute); use Pod::Usage; #use Getopt::Std; our($opt_h,$opt_i, $opt_o, $opt_e, $opt_p, $opt_t, $opt_l, $opt_j, $opt_g, $opt_q); our $VERSION; $VERSION = sprintf "0.%03d", q$Revision: 427 $ =~ /(\d+)/g; sub DefineAncDer { my $data_type=shift; if ($data_type == 0) { my $tem=0; my $mal=1; return ($tem, $mal); } elsif ($data_type == 1) { my $tem="C"; my $mal="G"; return ($tem, $mal); } } sub ReadCorrespond { my($name_correspond) =shift; my $data_qual = shift; my($ligne, @tableau); my(%correspondance); open (CORRESP, '<', $name_correspond) || die "Unable to open file $name_correspond: $!\n"; while ($ligne=) { chomp($ligne); if ($ligne =~ /^$/) { next; } ####### Qualitative data ###### if ($data_qual eq "quali") { @tableau=split(/\s+/, $ligne); if ($#tableau != 2) { die "error in $name_correspond: not 3 columns at line '$ligne'\n"; } else { $tableau[2]=~ s/c//; $tableau[1]=~ s/m//; if ($tableau[1] =~ /c/ || $tableau[2] =~ /m/) { die "You have probably exchanged the order of cases and controls in file $name_correspond. It should be: haplo_name m_case_number c_control_number\n"; } $correspondance{$tableau[0]}->{"case"}=$tableau[1]+0; $correspondance{$tableau[0]}->{"control"}=$tableau[2]+0; } } else { ##### Quantitative data ####### @tableau = split(/\s+/, $ligne); my @quant_val = splice(@tableau, 1); $correspondance{$tableau[0]}=\@quant_val; } } #my($clefs); #DEBUG # foreach $clefs (keys %correspondance) { # print "$clefs case: ", $correspondance{$clefs}->{"case"}, "\n"; # print "$clefs, control: ",$correspondance{$clefs}->{"control"}, "\n"; # } return(\%correspondance); } sub calcul_moyenne_variance { my $correspondance = shift; my $somme=0; my $nb_val=0; my $somme_carres=0; foreach my $haplo (keys %{$correspondance}) { foreach my $elem (@{$correspondance->{$haplo}}) { $nb_val++; $somme+=$elem; $somme_carres+=$elem*$elem; } } my $moyenne = $somme/$nb_val; my $variance = $somme_carres/$nb_val-$moyenne*$moyenne; return ($moyenne, sqrt($variance)); } sub calcul_moyenne_nbind { my $tableau = shift; my $somme = 0; my $nb_ind=scalar(@{$tableau}); foreach my $elem (@{$tableau}) { $somme+=$elem; } return ($somme/$nb_ind, $nb_ind); } sub test_quanti_bilateral { my $moy_gen = shift; my $ec_type_gen = shift; my $moy_loc = shift; my $nb_ind_loc = shift; my $epsilon = shift; if ($moy_loc > ($moy_gen + $epsilon*$ec_type_gen/sqrt($nb_ind_loc))) { return "eleve"; } elsif ($moy_loc < ($moy_gen - $epsilon*$ec_type_gen/sqrt($nb_ind_loc))) { return "faible"; } else { return "?"; } } sub travail { my($seuil)=shift; my($data_type)=shift; my($proportion_malades)=shift; my $low =shift; my $name_correspond=shift; my $outgroup = shift; my $data_qual = shift; my($ligne); my($temoin, $malade, $sequence, $nom, $debut, $ancetre); my($anc, $num_car, $prop_mal, $prop_tem); my(@tableau, @tab2); my($tem, $mal)=DefineAncDer($data_type); my($correspondance)=ReadCorrespond($name_correspond,$data_qual); #foreach my $clefs (keys %{$correspondance}) { # print "$clefs case ", $correspondance->{$clefs}->{"case"}, "\n"; # print "$clefs, control ",$correspondance->{$clefs}->{"control"}, "\n"; # } my $found_outgroup=0; my $ici = 0; my $phylo_prog= "Phylip"; my $compteur=0; while ($ligne=){ chomp($ligne); if ($ligne =~/^$/) { next; } $compteur++; my $diese='#'; if ($ligne =~ /^\s*$diese[N|n]exus\s*$/) { $phylo_prog="PAUP"; } if ($phylo_prog eq "PAUP") { if ($ligne =~ /^\s*matrix\s*$/) { print $ligne, "\n"; $ici=1; next } if ($ligne =~ /^\s*;\s*$/) { $ici=0; } if ($ligne =~ /^\s*\[/) { next; } } else { if ($compteur>1) { $ici=1; } } if ($ici==0 && $phylo_prog eq "PAUP") { if ($ligne =~ /dimension ntax=([0-9]+)\s+nchar=([0-9]+);/) { $num_car=$2+1; print "dimension ntax=$1 nchar=", $num_car, ";\n"; }elsif ($ligne =~ /format symbols=\"([0-9ATGCU]+)\"/) { my($format)=$1; my($format_old)=$1; $format =~ tr/GC//d; $ligne =~ s/$format_old/${format}CG/; print $ligne, "\n"; } elsif ($ligne =~ /ancstates\s+\*anc\s+vector\s*=\s*([0-9ATCG]+)\s*;/) { $anc=$1; $anc=$anc."?"; $ligne =~ s/$1/$anc/; print $ligne,"\n"; } elsif ($ligne=~ /begin paup;/) { print $ligne,"\n"; print "exclude $num_car; \n"; } elsif ($ligne=~ /\s*describetrees/) { print "include $num_car;\n"; print $ligne,"\n"; } elsif ($ligne =~ /^\s*([0-9]+)\s+([0-9]+)$/) { $num_car=$2+1; print "$1\t$num_car\n"; } else { print $ligne, "\n"; } } elsif ($ici==0 && $phylo_prog eq "Phylip") { if ($ligne =~ /^\s*([0-9]+)\s+([0-9]+)\s*$/) { print $1, "\t", $2+1, "\n"; } else { die "Strange line $ligne in Phylip file\n"; } } elsif ($ici==1) { if ($ligne =~ /^\s+$/) { next; } elsif ($ligne =~ /^\s*\[.+\]$/) { # print STDERR "TTTTT\n"; next; } else { @tableau=split(/\s+/, $ligne); $sequence=$tableau[1]; $nom=$tableau[0]; #DEBUG print "$nom $outgroup\n"; if ($nom eq $outgroup){ # $ancetre=$sequence."?"; print "$nom $sequence?\n"; $found_outgroup++; next; } # } else { #if ($debut =~ /^\s*H[0-9]{3}_m[0-9]{3}_c[0-9]{3}/) { # @tab2=split(/_/,$debut); # print $tab2[0],"\n"; # $temoin=$tab2[2]; # $temoin =~ s/c//; # print STDERR "temoin=$temoin\n"; # $malade=$tab2[1]; # $malade =~ s/m//; # if ($malade =~ /c/ || $temoin =~ /m/) { # die "You have probably interverti cases and controls in file correspond.txt. It should be: haplo_name m_case_number c_control_number\n"; # } # if ($debut eq $anc_name){ # $found_anc++; # } #$nom=$tableau[0]; # print "$nom\n"; ###### QUALITATIVE ###### if ($data_qual eq "quali") { if (not exists ($correspondance->{$nom})){ print STDERR "$nom is not found in the file $name_correspond. Assuming it is the outgroup.\nThe number of cases and controls affected to this sequence is set to 0\n"; $correspondance->{$nom}->{"case"}=0; $correspondance->{$nom}->{"control"}=0; } $malade=$correspondance->{$nom}->{"case"}; $temoin=$correspondance->{$nom}->{"control"}; if ($malade == 0 && $temoin == 0) { print STDERR "$nom is carried by 0 cases and 0 controls. The state ? has been attributed to the S character\n"; $sequence.="?"; print "$nom ", $sequence, "\n"; next; } # print " $nom mal=$malade\n"; $prop_mal=$malade/($malade+$temoin); $prop_tem=$temoin/($malade+$temoin); # print "M=$malade T=$temoin\n"; #print "test=$test\n"; # if ($test==0) { # test: difference |mal-tem| >=seuil # if ($malade > $temoin && $malade-$temoin>=$seuil) { #$sequence.="G"; # } elsif ($malade < $temoin && $temoin-$malade>=$seuil) { # $sequence.="C"; # } else { # $sequence.="?"; # } #} elsif ($test==1) { # if ($malade+$temoin==1) { #$sequence.="?"; if ( $malade+$temoin <= $low) { $sequence.="?"; } else { if ($prop_mal>$proportion_malades+ $seuil*sqrt($prop_mal*$prop_tem/($malade+$temoin))) { $sequence.=$mal; } elsif ($prop_mal<$proportion_malades- $seuil*sqrt($prop_mal*$prop_tem/($malade+$temoin))) { $sequence.=$tem; } else { $sequence.="?"; } #} } print "$nom ", $sequence, "\n"; #"_m$malade", "_c$temoin\t", $sequence, "\n"; } else { ###### QUANTITATIVE ####### if (not exists ($correspondance->{$nom})){ print STDERR "$nom is not found in the file". "$name_correspond\n"; } my ($moyenne_gen, $ec_type) = calcul_moyenne_variance ($correspondance); my ($moyenne_loc, $nb_ind)= calcul_moyenne_nbind ($correspondance->{$nom}); #DEBUG print "$nom\n"; #DEBUG print "Moyenne: $moyenne_gen\n"; #DEBUG print "Variance: $ec_type\n"; #DEBUG print "Moyenne locale: $moyenne_loc\n"; #DEBUG print "nb_ind: $nb_ind\n"; if ($nb_ind <= $low) { $sequence.="?"; } else { if (test_quanti_bilateral($moyenne_gen, $ec_type, $moyenne_loc, $nb_ind, $seuil) eq "eleve") { $sequence.=$mal; } elsif (test_quanti_bilateral($moyenne_gen, $ec_type, $moyenne_loc, $nb_ind, $seuil) eq "faible") { $sequence.=$tem; } else { $sequence.="?"; } } print "$nom ", $sequence, "\n"; } } } } #print "anc? $found_anc\n"; if ($found_outgroup==0 && $outgroup ne "nooutgroup") { die "outgroup not found in the file\n"; } elsif ($found_outgroup ==1 && $outgroup eq "noanc") { die " false outgroup found\n"; } elsif ($found_outgroup > 1) { die "Too many outgroups found ($found_outgroup outgroup)"; } } sub usage { my $msg =shift; my($progname) =shift; print STDERR "Error! ".$msg; print STDERR "usage :$progname [options]\n"; print STDERR " Options :\n"; print STDERR " [-h] this help\n"; print STDERR " -i input file\n"; print STDERR " -j input2 file (correspond.txt)\n"; print STDERR " -o output file\n"; print STDERR " -t data type: SNP or DNA\n"; # ancienne option -t test: 0= mal-tem>seuil 1= seuil proportion0+/-sqr(pq/n)] print STDERR " -p proportion of cases in the whole data set\n"; print STDERR " -e epsilon parameter\n"; print STDERR " -q quantitative or qualitative data\n"; print STDERR " [-g] name of the outgroup\n"; print STDERR " -l if an haplotype is present equal or less than -l times, the state of S will be set to ?\n"; } sub main { my($progname); my($seuil, $test, $proportion); my %options= ( "first-input-file" => \$opt_i, "second-input-file" => \$opt_j, "output-file" => \$opt_o, "epsilon" => \$opt_e, "data-type" => \$opt_t, "proportion" => \$opt_p, "outgroup" => \$opt_g, "low" => \$opt_l, "data-qual" => \$opt_q, ); #getopts('ho:i:j:e:t:p:l'); GetOptions (\%options, "version", "short-help|h", "help", "man", "first-input-file|i=s", "second-input-file|j=s", "output-file|o=s", "epsilon|e=s", "data-type|t=s", "proportion|p=s", "outgroup|g=s", "low|l=i", "data-qual|q=s", ) or pod2usage(2); if (defined($options{"version"})) { print $0, " version ", $VERSION, "\n"; print "(Perl version ", $], ")\n"; exit 0; } if (defined($options{"short-help"})) { pod2usage(-exitstatus => 0, -verbose => 0); } if (defined($options{"help"})) { pod2usage(-exitstatus => 0, -verbose => 1); } if (defined($options{"man"})) { pod2usage(-exitstatus => 0, -verbose => 2); } if ($opt_i) { open(STDIN, '<', $opt_i) or die "Impossible to open $opt_i : $!" ; } my $correspond_name; if ($opt_j) { $correspond_name=$opt_j; } else { $correspond_name="correspond.txt" } if ($opt_o) { open(STDOUT, '>', $opt_o) or die "Impossible to open $opt_o : $!" ; } if ($opt_e) { $seuil=$opt_e; } else { usage("The epsilon parameter is not defined!!\n", $progname); } my($data_type); if (defined($opt_t)) { if ($opt_t =~ /[Dd][Nn][Aa]/) { $data_type=1; } elsif ($opt_t =~ /[Ss][Nn][Ps]/) { $data_type=0; } else { usage("The data type (SNP or DNA) is missing\n", $progname); } # if (defined($opt_t)) { # if ($opt_t==0) { # $test=0; # } elsif ($opt_t==1) { # $test=1; # } else { # $test=-999; # print STDERR "illegal value of opt_t\n"; # } # } else { # die "manque le numero du test: 0: mal-tem=seuil 1: seuil=P0+/-sqr(pq/n)!!\n"; # } my($low); # Si $low !=0, if only one case or one control, then the state of S is ? if (not defined $opt_l) { die "The minimum number of haplotype should be set by -l\n"; } else { $low=$opt_l; } my $data_qual; if (!$opt_q) { die "data-qual must be specified\n"; } elsif ($opt_q eq "qualitative") { $data_qual="quali"; } elsif ($opt_q eq "quantitative") { $data_qual="quanti"; } else { die "Invalid value for data-qual (opt_q)\n"; } if ($data_qual eq "quali") { if ($opt_p) { $proportion=$opt_p; } else { usage("The proportion of cases in the sample is missing!\n", $progname); } } my $outgroup="nooutgroup"; if ($opt_g) { $outgroup = $opt_g; } travail($seuil, $data_type, $proportion, $low, $correspond_name, $outgroup, $data_qual); } } main; __END__ =head1 NAME altree-add-S - Title... =head1 SYNOPSIS altree-add-S [options] Options: --version program version --short-help|h brief help message --help help message with options descriptions --man full documentation --first-input-file|i input file 1 --second-input-file|j input file 2 data concerning the trait (qualitative or quantitative) --output-file|o output file --epsilon|e epsilon value --data-type|t data type: SNP or DNA --proportion|p proportion of cases in the sample (for qualitative data only) --data-qual|q data type: qualitative or quantitative [--outgroup|g] name of the outgroup --low|l if an haplotype is present equal or less than -l times, the state of S will be set to "?" =head1 OPTIONS =over 8 =item B<--version> Print the program version and exits. =item B<--short-help> Print a brief help message and exits. =item B<--help> Print a help message with options descriptions and exits. =item B<--man> Prints the manual page and exits. =item B<--first-input-file|i> Input file 1 (paup or phylip file) =item B<--second-input-file|j> Input file 2, contains the number of times a given haplotypes is carried by case and control individuals (qualitative data) or the quantitative values correqsponding to a givent haplotype (quantitative data) =item B<--output-file|o> Output file =item B<--epsilon|e> espilon parameter (see formula in the documentation) =item B<--data-type|t> Type of data: DNA (ATGCU) or SNP (0-1) =item B<--proportion|p> Proportion of case individuals in the sample =item B<--outgroup|g> Name of the outgroup (if it is not in the file containing the number of cases and controls per haplotype) =item B<--data-qual|q> Specify if the data are qualitative or quantitative =item B<--low|l> if an haplotype is present equal or less than -l times, the state of S will be set to "?" =back =head1 DESCRIPTION B adds a new character (called "character S") to each haplotype in the input file according to the number of cases and controls carrying it. =cut altree-v1.3.1/progs/altree0000755000175000017500000015506012252702460015657 0ustar vdanjeanvdanjean#! /usr/bin/perl use strict; use diagnostics; use warnings; use Getopt::Long qw(:config permute); use Pod::Usage; use Data::Dumper; srand(654321); use version; our $VERSION = qv(1.3.1); # Positionner la variable PERL5LIB si besoin # PERL5LIB est une variable comme PATH, sauf qu'elle ne sert pas à # trouver les programmes, mais plutôt les modules de perl # En bash : # export PERL5LIB=/chemin/vers/modules/perl:/chemin/vers/autres/modules # En tcsh : # setenv PERL5LIB /chemin/vers/modules/perl:/chemin/vers/autres/modules # Si les modules sont installés dans les emplacements standard de # perl, c'est inutile use ALTree::Chi2 (); use ALTree::Import; use ALTree::Utils qw(erreur); use ALTree::Input qw(PrepareTree); #use Newchi2treeUtils; use Math::TamuAnova; #use NAnova; use ALTree::Nanova; ########################################### ######## GLOBAL VARIABLES ######### ########################################### # Variable $nodes # Ref on Hash of ('id' => Node) # my $nodes; # Variable $sites # Ref on Hash of ('site_nb' -> Site) # my $sites; ########################################### ######## CONSTANTES ######### ########################################### package SplitMode; use constant NOSPLIT => 0; use constant CHI2SPLIT => 1; package CoEvo; use constant SIMPLE => 0; use constant DOUBLE => 1; package RootMeth; use constant OUTG => 0; use constant ANC => 1; package SignUtil; use constant NO => 0; use constant YES => 1; package Seuil; use constant SAMPLESIZE => 5; use constant P_VAL_CHI2 => 0.01; use constant P_VAL_TESTPROP => 0.01; use constant ONLY_CASE => 3; package DataQual; use constant QUALI => 0; use constant QUANTI => 1; use ALTree::to_rewrite; package main; ########################################### ######### BUILDING OF THE TREE ########## ########################################### # Outgroup is not removed from the hash nodes. # It is only removed from the list of children of it's father sub RemoveOutgroup { my $tree=shift; my $outgroup=shift; my($father_outgr)=$outgroup->GetFather(); $father_outgr->DeleteChild($outgroup); } # Outgroup is put again in the list of children of it's father sub AddOutgroup { my($outgroup)=shift; my($father_outgr)=$outgroup->GetFather(); $father_outgr->AddChild($outgroup); } sub NbFils { my($node)=shift; return $node->NbChildren(); } sub Name { my($node)=shift; return $node->Name(); } ########################################################### ####### CHECK FUNCTIONS ################################### ########################################################### # Do some check on the tree # Return true (1) if the outgroup need to be removed sub CheckCorrespondance { my($tree)=shift; my($correspondance)=shift; my($name_corres)=shift; my($outgroup)=shift; my($ret)=0; #Check if all the leaf are defined in $correspondance foreach my $node ($tree->GetNodesList()) { my($nb_fils)=$node->NbChildren(); if ($nb_fils == 0) { # We are on a leaf if (not defined $correspondance->{$node->GetId()}) { if (defined($outgroup) && ($node->GetId() eq $outgroup)) { $ret=1; } else { #$node->SetCase(0); #$node->SetControl(0); if (not defined($outgroup)) { erreur("The leaf '". $node->Name(). "' is not in the input file ". "'$name_corres'.\nPerhaps this is the". " outgroup and you need to remove it (option". " --remove-outgroup).\n". "Please, check you data\n", 0); } else { erreur("The leaf '". $node->Name(). "' is not in the input file ". "'$name_corres'.\nPlease, check you data\n", 0); } } } } } # Check if all the entries for correspondance whose name begin by # H are leafs in the tree foreach my $clef (keys %{$correspondance}) { if (not $tree->HasNodeIndex($clef)) { erreur("Node '$clef' found in '$name_corres' does". " not exist in the tree. You have probably". " forgot to remove the haplotype corresponding". " to the ancestor.\nPlease, check the input file". " '$name_corres'.\n", 0); } if ($tree->GetRoot()->Name() eq $clef) { next; } else { my($nb_fils)=$tree->GetNode($clef)->NbChildren(); if ($nb_fils!=0) { erreur("'$clef' present in $name_corres is a". " internal node (not a leaf) in the tree\n". "Please, check your data"); } } } return $ret; } ################################################# ######## PARCOURS ET REMPLISSAGE ARBRE ######### ################################################# #REWRITE: sub CalculChi2 #REWRITE: sub parcours_nosplit_chi2split sub FillCaseControl { my($present_node)=shift; my($correspondance)=shift; if ($present_node->NbChildren()==0) { my($id); $id=$present_node->{"id"}; if (not defined $present_node->{"case"}) {# car sinon, pb pour H000 $present_node->{"case"} = $correspondance->{$id}->{"case"}; } if (not defined $present_node->{"control"}) { $present_node->{"control"} = $correspondance->{$id}->{"control"}; } #print $present_node->{"id"}, " m:", $present_node->{"case"}, " c:", $present_node->{"control"}, " "; } else { my($child); # print $present_node->{"id"}, " "; #123456 for $child ($present_node->GetChildrenList()) { FillCaseControl($child, $correspondance); $present_node->{"case"}+=$child->{"case"}; $present_node->{"control"}+=$child->{"control"}; } #print $present_node->{"id"}, " m:", $present_node->{"case"}," c:", $present_node->{"control"}," "; } } ######## QUANTITATIF ######## sub FillQuanti { my($present_node)=shift; my($correspondance)=shift; if ($present_node->NbChildren()==0) { my($id); $id=$present_node->{"id"}; #if (not defined $present_node->{"quanti"}) { # car sinon, pb pour H000 #$present_node->{"quanti"}=[]; #print "cor: ", Dumper($correspondance->{$id}), "\n"; foreach my $corresp (@{$correspondance->{$id}}) { $present_node->AddQuanti($corresp->[0], $corresp->[1]); } #} #DEBUG print STDERR $present_node->{"id"}, " " ; #DEBUG for (my $i=0; $i< scalar (@{$present_node->{"quanti"}}); $i++) { #DEBUG print STDERR $present_node->{"quanti"}->[$i]->[0], " (" ,$present_node->{"quanti"}->[$i]->[1], ") "; #DEBUG } #DEBUG print STDERR "\n"; } else { my($child); for $child ($present_node->GetChildrenList()) { FillQuanti($child, $correspondance); foreach my $quanti (@{$child->GetQuantiList()}) { $present_node->AddQuanti($quanti->[0], $quanti->[1]); } } #DEBUG print STDERR $present_node->{"id"}, " " ; #DEBUG for (my $i=0; $i< scalar (@{$present_node->{"quanti"}}); $i++) { #DEBUG print STDERR $present_node->{"quanti"}->[$i]->[0], " (" ,$present_node->{"quanti"}->[$i]->[1], ") "; #DEBUG } #DEBUG print STDERR "\n"; } } #REWRITE: sub ParcoursQuanti #REWRITE: sub CalculAnovaOneWay ################################################## ######## AFFICHAGE DE L' ARBRE ################## ################################################## sub LongueurTrait { my($node)=shift; my($level)=shift; return(" "x$level."------"); } sub AffichageParLevel # Ne prend pas une fonction pour l'affichage { my ($racine)=shift; my ($len)=6; my $AffichageInterne; $AffichageInterne= sub { my ($node) = shift; my ($start) = shift; # début commun à tout ce noeud (et descendants) my ($up) = shift; # quand on est au dessus de ce noeud my ($here) =shift; # quand on affiche ce noeud my ($down) =shift; # quand on est au dessous de ce noeud my($nb_fils)=NbFils($node); my($i); if ($nb_fils >= 1) { $AffichageInterne->($node->GetChild(0), $start.$up.(" "x$len), " ", "/", "|"); } for ($i=1; $i<$nb_fils/2; $i++) { $AffichageInterne->($node->GetChild($i), $start.$up.(" "x$len), "|", "|", "|"); } print $start.$here.("-"x$len)."* ", Name($node), "\n"; for ( ;$i < $nb_fils-1; $i++) { $AffichageInterne->($node->GetChild($i), $start.$down.(" "x$len), "|", "|", " "); } if ($nb_fils > 1) { $AffichageInterne->($node->GetChild($nb_fils-1), $start.$down.(" "x$len), "|", "\\", " "); } }; $AffichageInterne->($racine, "", " ", "-", " "); } sub AffichageArbre # Prend une fonction pour l'affichage { my ($racine)=shift; my ($function)=shift; my ($len)=4; my $AffichageInterne; $AffichageInterne= sub { my ($node) = shift; my ($start) = shift; # début commun à tout ce noeud (et descendants) my ($up) = shift; # quand on est au dessus de ce noeud my ($here) =shift; # quand on affiche ce noeud my ($down) =shift; # quand on est au dessous de ce noeud my ($at) =shift; # quand on les autres lignes de ce noeud my($nb_fils)=NbFils($node); my($i, $j, $sep); my (@tableau)=split (/\n/, $function->($node)); if ($nb_fils >= 1) { $AffichageInterne->($node->{"children"}->[0], $start.$up.(" "x$len), " ", "/", "|", "|"); } for ($i=1; $i<$nb_fils/2; $i++) { $AffichageInterne->($node->{"children"}->[$i], $start.$up.(" "x$len), "|", "|", "|", "|"); } print $start.$here.("-"x$len)."* ", $tableau[0], "\n"; if ($nb_fils > 1) { $sep="|"; } else { $sep=" "; } for ($j=1; $j<=$#tableau; $j++) { print $start.$at.(" "x$len).$sep." ", $tableau[$j], "\n"; } # print $start.$here.("-"x$len)."* ", $function->($node), "\n"; for ( ;$i < $nb_fils-1; $i++) { $AffichageInterne->($node->{"children"}->[$i], $start.$down.(" "x$len), "|", "|", "|", "|"); } if ($nb_fils > 1) { $AffichageInterne->($node->{"children"}->[$nb_fils-1], $start.$down.(" "x$len), "|", "\\", " ", " "); } }; $AffichageInterne->($racine, "", " ", "-", " ", " "); } ############################################################### ## FONCTION DEFINISSANT LES INFOS QUI VONT ETRE AFFICHEES ##### ############################################################### # Return results of the test: ddl, p_value, significatif or not, texte and warning sub TestInfos { my($node)=shift; return InfosAffichees($node, 2); # my($chaine)=Name($node)."\n"; # my($lbl_test)=0; # my $test; # if (defined $node->{"res_test"}) { # for $test (@{$node->{"res_test"}}) { # $chaine.="[".$test->{"level"}."]"." ddl= ".$test->{"ddl"}. # " chi2= ".$test->{"chi2"}. # " p_value_chi2= ".$test->{"p_val"}. # } # } # return($chaine); } sub AssociationInfos { my($node)=shift; return InfosAffichees($node, 1); } sub TreeInfos { my($node)=shift; return InfosAffichees($node, 0); } sub InfosQuanti { my($node)=shift; return InfosAffichees($node, 3); } sub InfosQuantiNoperm { my($node)=shift; return InfosAffichees($node, 4); } #Return ddl, level, pvalues and chi2 #REWRITE: sub InfosAffichees ########################################################## ######## MODIFICATIONS/CALCULS SUR L'ARBRE ############### ########################################################## sub FusionBrNulles { my($present_node)=shift; my($child); my($nb_fils)=NbFils($present_node); $present_node->{"label"}=$present_node->{"id"}; $present_node->RecordOrigFather(); if ($nb_fils != 0) { # on n'est pas dans une feuille $present_node->AddOldChild($present_node->GetChildrenList()); $present_node->ForgetChildren(); foreach $child ($present_node->GetOldChildrenList()) { if (! FusionBrNulles($child)) { $present_node->AddChild($child); } } if (not $present_node->HasFather()) { return 0; } if (not defined $present_node->{"br_len"}) { print STDERR "Branch lenght not defined for ", $present_node->{"id"}, "\n"; exit 1; } elsif ($present_node->GetBrLen() == 0) { # branche nulle #print "brnulle ", $present_node->{"id"}, " "; foreach $child (@{$present_node->{"children"}}) { $child->{"father"}=$present_node->{"father"}; #remplace father #print "father's name ", $present_node->GetFather()->Name(),"\n"; $present_node->GetFather()->AddChild($child); } $present_node->{"father"}->{"label"}.="+(".$present_node->{"label"}.")"; return 1; } } return 0; } ########################################################## ################### CLEAN FUNCTION ###################### ########################################################## sub CleanStats { my($tree)=shift; foreach my $node ($tree->GetNodesList()) { $node->EraseCase(); $node->EraseControl(); $node->EraseQuanti(); delete $node->{"res_test"}; } } ########################################################## ########### FUNCTIONS FOR ASSOCIATION TEST ############### ########################################################## ############ QUALITATIF ############### # From the hash correspondance, fill the variables necessary for Resampling sub Correspond2Resampling { my($correspondance)=shift; my($haploID, $ref_effectif, $total_mal, $total_tem); foreach $haploID (keys %{$correspondance}) { $ref_effectif->{$haploID}=$correspondance->{$haploID}->{"case"}+ $correspondance->{$haploID}->{"control"}; $total_mal+=$correspondance->{$haploID}->{"case"}; $total_tem+=$correspondance->{$haploID}->{"control"}; } # DEBUG print "total_mal=$total_mal total_tem=$total_tem\n"; return ($total_mal, $total_tem, $ref_effectif); } sub Resampling # repompée intégralement de tree_resampling puis modifiée.... { my($total_mal) = shift; my($total_tem) = shift; my($ref_effectif) = shift; # ref on a hash: keys=H002 value= nbmal+nb_tem my($clefs, $alea, $i); my($new_correspondance); foreach $clefs (keys %{$ref_effectif}) { $new_correspondance->{$clefs}->{"case"}=0; $new_correspondance->{$clefs}->{"control"}=0; for ($i=0; $i<$ref_effectif->{$clefs}; $i++) { $alea=rand($total_mal+$total_tem); # print "alea=$alea"; if ($alea < $total_mal) { # print "inf\n"; $total_mal--; $new_correspondance->{$clefs}->{"case"}++; $new_correspondance->{$clefs}->{"control"}+=0; } else { # print "sup\n"; $total_tem--; $new_correspondance->{$clefs}->{"control"}++; $new_correspondance->{$clefs}->{"case"}+=0; } } # print "clefs:$clefs nb_mal=$nb_mal{$clefs}, nb_tem=$nb_tem{$clefs}\n"; } return ($new_correspondance); } sub computeTreeStructure($) { my $racine=shift; my $nextIndex=shift; my (@leaf_refs, @leaf_depth, @leaf_parent, @nleaf_parent); my $nleaf2id={}; # Hash $node -> [index, $node->Father()] my $computeNLeaf; $computeNLeaf = sub { my $nodeList=shift; my $max_depth=0; my $nextIndex=0; my @childNodeList=(); my $parent; foreach my $node (@{$nodeList}) { push @childNodeList, $node->GetChildrenList(); } if (scalar(@childNodeList) > 0) { ($max_depth,$nextIndex)=$computeNLeaf->(\@childNodeList, $nextIndex); } foreach my $node (@{$nodeList}) { # Si on est un noeud interne sans id, on définit un index if (NbFils($node) != 0 && !exists($nleaf2id->{$node})) { $nleaf2id->{$node}=[$nextIndex++, $node->Father()]; } } if (scalar(@childNodeList) == 1) { # Dans le cas où on a juste une seule branche, on "fusionne" # avec le noeud père (on lui assigne à ce dernier le même index # que nous) my $parent=$childNodeList[0]->Father(); if (defined($parent)) { $nleaf2id->{$parent}=[$nleaf2id->{$childNodeList[0]}->[0], $parent->Father()] ; } } if (scalar(@childNodeList) > 0) { $max_depth++; } return ($max_depth, $nextIndex); }; my ($max_depth,$nbIntNodes)=$computeNLeaf->([$racine], 0); foreach my $node (keys(%{$nleaf2id})) { my ($id_my, $parent)=@{$nleaf2id->{$node}}; if (!defined($parent) || !exists($nleaf2id->{$parent})) { $nleaf_parent[$id_my]=-1; } else { my $id_parent=$nleaf2id->{$parent}->[0]; if ($id_parent != $id_my) { $nleaf_parent[$id_my]=$id_parent; } } } my $computeLeaf; $computeLeaf = sub { my $nodeList=shift; my $depth=shift; my @childNodeList=(); my @leafList=(); foreach my $node (@{$nodeList}) { if (NbFils($node) != 0) { push @childNodeList, $node->GetChildrenList(); } else { push @leafList, $node; } } if (scalar(@childNodeList) > 0) { my $rec_depth=$depth; if (scalar(@childNodeList) > 1) { $rec_depth++; } $computeLeaf->(\@childNodeList, $rec_depth); } foreach my $node (@leafList) { push @leaf_refs, $node; push @leaf_depth, $depth; push @leaf_parent, $nleaf2id->{$node->Father()}->[0]; } return; }; $computeLeaf->([$racine], 0); return (\@leaf_refs, \@leaf_depth, \@leaf_parent, \@nleaf_parent, $max_depth); } sub computeChi2 { my $leaf_refs=shift; my $leaf_depth=shift; my $leaf_parent=shift; my $nleaf_parent=shift; my $max_depth=shift; my $correspondance=shift; my $prolonge=shift; my $sign_util=shift; my @results; my $nb_leaves=scalar(@{$leaf_refs}); my $first_leaf=0; my $nb_used_leaves=0; my @intNodes; my %next_intNodes_id; for(my $depth = $max_depth; $depth > 0; $depth--) { my @leaves; my @prev_intNodes_id=keys %next_intNodes_id; %next_intNodes_id=(); my $next_first_leaf; { my $i; for ($i=$first_leaf; $i<$nb_leaves && $leaf_depth->[$i] == $depth; $i++) { my $id=$leaf_refs->[$i]->GetId(); push @leaves, $correspondance->{$id}; my $parent=$leaf_parent->[$i]; if ($parent != -1) { $next_intNodes_id{$parent} = 1; $intNodes[$parent]->{"case"} += $correspondance->{$id}->{"case"}; $intNodes[$parent]->{"control"} += $correspondance->{$id}->{"control"}; } } $next_first_leaf=$i; } if ($prolonge == 1) { for (my $i=$next_first_leaf; $i<$nb_leaves; $i++) { my $id=$leaf_refs->[$i]->GetId(); push @leaves, $correspondance->{$id}; } } foreach my $id (@prev_intNodes_id) { push @leaves, $intNodes[$id]; my $parent=$nleaf_parent->[$id]; if ($parent != -1) { $next_intNodes_id{$parent} = 1; $intNodes[$parent]->{"case"} += $intNodes[$id]->{"case"}; $intNodes[$parent]->{"control"} += $intNodes[$id]->{"control"}; } } my $nb_used_leaves=$next_first_leaf - $first_leaf; $first_leaf=$next_first_leaf; my($test_results)={}; CalculChi2(\@leaves, scalar(@leaves)-1, $test_results, $sign_util ); unshift @results, $test_results->{"chi2"}; } return \@results; } sub RepeatAssociation { my($tree)=shift; my($dataqual)=shift; my($correspondance)=shift; my($prolonge)=shift; my($nb_permutation)= shift; my($sign_util)=SignUtil::NO; my($racine)=$tree->GetRoot(); my($ligne_stats)=[]; print "\n Number of permutation: $nb_permutation\n"; my($value_per_line, $test_res); my($corrected_values); if ($dataqual == DataQual::QUALI) { my($leaf_refs,$leaf_depth,$leaf_parent,$nleaf_parent, $max_depth) =computeTreeStructure($racine); $value_per_line=$max_depth; if(0) { my $res=computeChi2($leaf_refs,$leaf_depth,$leaf_parent,$nleaf_parent, $max_depth, $correspondance, $prolonge, $sign_util); push @{$ligne_stats}, @{$res}; $value_per_line=scalar(@{$res}); my($total_mal, $total_tem, $effectif); ($total_mal, $total_tem, $effectif)=Correspond2Resampling($correspondance); for (my $i=0; $i<$nb_permutation; $i++) { my $new_correspondance=Resampling($total_mal, $total_tem, $effectif); my $res=computeChi2($leaf_refs,$leaf_depth,$leaf_parent,$nleaf_parent, $max_depth, $new_correspondance, $prolonge, $sign_util); push @{$ligne_stats}, @{$res}; } } my $resamp=ALTree::CUtils::ResamplingChi2( $leaf_refs, $leaf_depth, $leaf_parent, $nleaf_parent, $max_depth, $prolonge, $nb_permutation, 0 ); $ligne_stats=$resamp->{"chi2s"}; $corrected_values=ALTree::CUtils::DoublePermutation ($nb_permutation+1, $value_per_line, $ligne_stats); } else { foreach $test_res (@{$racine->{"res_test"}}) { # Si on n'a qu'une seule branche, la p-value n'est pas définie if ($test_res->{"nb_facteurs"} > 1) { $value_per_line++; } } StockeQuanti($ligne_stats, $racine); # F values corresponding to the real data are put to @{$ligne_F} #print STDERR Dumper($correspondance), "\n"; for (my $i=0; $i<$nb_permutation; $i++) { CleanStats($tree); AssociationQuanti($racine, $correspondance, $prolonge, $sign_util); StockeQuanti($ligne_stats, $racine); } $corrected_values=ALTree::CUtils::DoublePermutation ($nb_permutation+1, $value_per_line, $ligne_stats); } return($value_per_line, $corrected_values); } ############ QUANTITATIF ############### # From the hash correspondance, fill the variables necessary for Resampling sub Correspond2ResamplingQuanti { my($correspondance)=shift; my($haploID, $nbval_per_haplo, @valeurs_tot); foreach $haploID (keys %{$correspondance}) { $nbval_per_haplo->{$haploID}=scalar(@{$correspondance->{$haploID}}); foreach my $valeurs (@{$correspondance->{$haploID}}) { push (@valeurs_tot, $valeurs->[0]); } } #DEBUG print STDERR" TOUTES VAL:\n"; #DEBUG foreach my $val (@valeurs_tot) { #DEBUG print STDERR $val, " " ; #DEBUG } #DEBUG print STDERR"\n"; #DEBUG print STDERR " NB_VAL_PER_HAPLO "; #DEBUG foreach $haploID (keys %{$nbval_per_haplo}) { #DEBUG print STDERR $haploID, " " ,$nbval_per_haplo->{$haploID}, "\n"; #DEBUG } return (\@valeurs_tot, $nbval_per_haplo); } sub ResamplingQuanti { my $valeurs_tot = shift; my $nbval_per_haplo = shift; my $new_correspondance; my $num_haplo=0; foreach my $haploID (keys %{$nbval_per_haplo}) { $num_haplo++; for (my $i=0; $i<$nbval_per_haplo->{$haploID}; $i++) { my $nb= scalar (@{$valeurs_tot}); my $alea = int(rand($nb)); # Je récupère bien un nb entre 0 et le dernier élément du tab #DEBUG print STDERR "ALEA$haploID ", $alea , " "; $new_correspondance->{$haploID}->[$i]->[0]=$valeurs_tot->[$alea]; $new_correspondance->{$haploID}->[$i]->[1]=$num_haplo; splice(@{$valeurs_tot}, $alea, 1); } } #DEBUG print "\n TEST\n"; #DEBUG foreach my $haploID (keys(%{$new_correspondance})) { #DEBUG print STDERR $haploID , " " ; #DEBUG for (my $i=0; $i{$haploID}}); $i++) { #DEBUG print STDERR $new_correspondance->{$haploID}->[$i]->[0], " "; #DEBUG } #DEBUG print STDERR "\n"; #DEBUG } return ($new_correspondance); } sub StockeQuanti { my($ligne_chi2)=shift; my $racine=shift; my $test_res; foreach $test_res (@{$racine->{"res_test"}}) { # Si on n'a qu'une seule branche, la p-value n'est pas définie if ($test_res->{"nb_facteurs"} > 1) { push @{$ligne_chi2}, $test_res->{"F"}; } } # Fill a 2*n table: each line containig chi2 and each columns # corresponding to one repetition #push (@{$table_of_line}, \@ligne_chi2); } sub AssociationQuanti { my($racine)=shift; my($correspondance)=shift; my($prolonge)=shift; my($sign_util)=shift; my($valeur_tot, $nbval_per_haplo, $new_correspondance); ($valeur_tot, $nbval_per_haplo)=Correspond2ResamplingQuanti($correspondance); ($new_correspondance)=ResamplingQuanti($valeur_tot, $nbval_per_haplo); # DEBUG my($haploID); #foreach $haploID (keys %{$new_correspondance}) { # print "Haplo: $haploID mal= ",$new_correspondance->{$haploID}->{"case"}, " tem=", $new_correspondance->{$haploID}->{"control"},"\n"; #} #print "\n"; FillQuanti($racine,$new_correspondance); ParcoursQuanti($racine->{"children"}, $prolonge, SplitMode::NOSPLIT, $racine, $sign_util); } ########################################################## ################# LOCALISATION ########################### ########################################################## sub CalculateRit { my($tree)=shift; my($s_site_nb)=shift; my($s_state)=shift; my($co_evo)=shift; my($clef); my($info_mutation); my($s_t, $s_t_rev)=(0,0); my($s_sitesens_per_tree)=$tree->GetSite($s_site_nb) ->GetSens($s_state); if (not defined($s_sitesens_per_tree)) { warn("No S site (number $s_site_nb)". " with sens '".$s_state->GetLabel()."' found\n"); } # Calcul du Rit # Notation des commentaires: le s_site mute de T->M foreach my $node ($s_sitesens_per_tree->GetNodesList()) { foreach my $sitesens_per_tree ($node->GetApoList()) { if ($sitesens_per_tree == $s_sitesens_per_tree) { # on profite du fait pour incrémenter le nombre de # mutation de s_site # (On aurait aussi pu globalement incrémenter s_t # de la taille du tableau du premier foreach : # en effet, on passe ici une fois pour chaque # foreach du second niveau) $s_t++; } else { # le sitesens co-mute par ex de 1->2 $sitesens_per_tree->IncRit(); } } } if ($co_evo == CoEvo::DOUBLE){ # On 'retourne' le sens s_state $s_state->Switch(); my $s_sitesens_per_tree_rev=$tree->GetSite($s_site_nb) ->GetSens($s_state); # On le remet dans le bon sens après l'avoir tout tourneboulé $s_state->Switch(); if (defined($s_sitesens_per_tree_rev)) { # Calcul du Rit foreach my $node ($s_sitesens_per_tree_rev->GetNodesList()) { foreach my $sitesens_per_tree ($node->GetApoList()) { if ($sitesens_per_tree == $s_sitesens_per_tree_rev) { # nombre de mutation inverse du s_site (M->T) # (même remarque que précédemment) $s_t_rev++; } else { # le sitesens co-mute de 2->1 avec s_site M->T # donc on incrémente Rit pour sitesens 1->2 $sitesens_per_tree->GetSensRev()->IncRit(); } } } } } elsif ($co_evo == CoEvo::SIMPLE){ } else { die "Invalid value for co_evo: $co_evo - should be 0 or 1\n"; } return($s_t, $s_t_rev); } sub CalculateEit { my($tree)=shift; # Comme d'hab my($s_site_nb)=shift; # Pas utile ici ! my($s_t)=shift; # nombre de fois où S mute T->M my($s_t_rev)=shift; # nombre de fois où S mute M->T my($b_t)=shift; # nombre de branches au total dans l'arbre # (après fusion des branches nulles) # Calcul du Eit (et implicitement le Mit) foreach my $site_per_tree ($tree->GetSitesList()) { foreach my $sitesens_per_tree ($site_per_tree->GetSensList()) { $sitesens_per_tree-> SetEit(($sitesens_per_tree->GetMit()*$s_t+ $sitesens_per_tree->GetSensRev()->GetMit()*$s_t_rev) /$b_t); # print " m_it= ", $sitesens_per_tree->GetMit(),"\n"; # print $site_per_tree->GetSiteNb()," E_i ", $sitesens_per_tree->GetEit(), "\n"; # print " R_it= ", $sitesens_per_tree->GetRit(), "\n"; # print " V_it= ", $sitesens_per_tree->GetVit(),"\n"; } } } sub PrintAllVit { my($tree)=shift; my($s_site_nb)=shift; my($mutation , $sens); foreach my $site_per_tree ($tree->GetSitesList()) { if ($site_per_tree->GetSiteNb() == $s_site_nb) { next; } foreach my $sitesens_per_tree ($site_per_tree->GetSensList()) { print "mutation= ",$site_per_tree->GetSiteNb(), "\t"; print "sens= ", $sitesens_per_tree->GetSensLabel(),"\n"; print " m_it= ", $sitesens_per_tree->GetMit(), " R_it= ", $sitesens_per_tree->GetRit(), " E_it= ", $sitesens_per_tree->GetEit(), " V_it= ", $sitesens_per_tree->GetVit(),"\n"; } } } sub PrintAllVi { my($foret)=shift; my($s_site_nb)=shift; my($mutation , $sens); foreach my $site_per_foret ($foret->GetSitesList()) { if ($site_per_foret->GetSiteNb() == $s_site_nb) { next; } foreach my $sitesens_per_foret ($site_per_foret->GetSensList()) { print "mutation= ",$site_per_foret->GetSiteNb(), "\t"; print "sens= ", $sitesens_per_foret->GetSensLabel(),"\t"; print " V_i= ", $sitesens_per_foret->GetVi(),"\n"; } } } # Pour chaque site, on a choisi un sens en fonction du Vi (max) et on # affiche le tableau des Vi pour tous les sites et pour le sens choisi sub PrintViMax { my($foret)=shift; my($s_site_nb)=shift; foreach my $site ($foret->GetViMaxSiteList()) { if ($site->GetSiteNb() == $s_site_nb) { next; } print "site number ", $site->GetSiteNb(), "\n"; foreach my $sens ($site->GetViMaxSensList()) { print "\tsens ", $sens->GetSensLabel(), "\t"; print "V_i = ", $sens->GetVi(), "\n"; } } } # Affiche le tableau de tous les Vi, pour tes les sites et pour tous # les sens (triés par ordre décroissant) sub PrintViMaxSens { my($foret)=shift; my($s_site_nb)=shift; foreach my $sens ($foret->GetViMaxSensList()) { if ($sens->GetSiteNb() == $s_site_nb) { next; } print "site number ", $sens->GetSiteNb(), "\t"; print "\tsens ", $sens->GetSensLabel(), "\t"; print "V_i = ", $sens->GetVi(), "\n"; } } ########################################################### # Fonctions du prog principal ############################# ########################################################### sub check_tree_numbers { my $num_tree_in_file=shift; my $user_tree_numbers=shift; my @tree_numbers; my %selected_trees; for my $tree_num (@{$user_tree_numbers}) { if ($tree_num < 1) { erreur("Invalid tree-to-analyse $tree_num\n", 0); } elsif ($tree_num > $num_tree_in_file) { erreur("Invalid tree-to-analyse $tree_num (only $num_tree_in_file in file)\n", 0); } if (defined($selected_trees{$tree_num})) { erreur("Invalid tree-to-analyse $tree_num (already selected)\n", 0); } $selected_trees{$tree_num}=1; # Correspondance entre les numéros de l'utilisateur et les # indices dans le tableau (ie commence à 1 ou à 0) push @tree_numbers, $tree_num-1; } return \@tree_numbers; } sub select_trees { my $max=shift; my $nb=shift; my @tab; for (my $i=0; $i<$max; $i++) { $tab[$i]=$i; } my @selected; for (my $i=0; $i<$nb; $i++) { my $alea=int(rand($max--)); push @selected, $tab[$alea]; splice(@tab, $alea, 1); } return \@selected; } sub PrintTree { my $tree=shift; my ($racine)=$tree->GetRoot(); AffichageArbre($racine, \&TreeInfos); print "\n\n"; } sub SwitchRoot { my $tree= shift; my $outgroup=shift; my $root=$outgroup->GetFather(); $tree->ChangeRoot($root); my $newracine=$tree->GetRoot(); } ################################################################ #################### TRAITE PLS FICHIERS ####################### ################################################################ sub TraiteSeveralFiles { #DEBUG print STDERR "Pool rés des fichiers\n"; my $res_files = shift; my ($nb_files); my $p_finale=0; my $pmin_min=99; my @distrib=(); for (my $i=0; $i<=$#$res_files; $i++) { shift(@{$res_files->[$i]->{"distrib_pmin"}}); push (@distrib, @{$res_files->[$i]->{"distrib_pmin"}}); if ( $res_files->[$i]->{"pmin"} < $pmin_min) { $pmin_min = $res_files->[$i]->{"pmin"}; } } print "La pmin minimale est $pmin_min, la taille de la distrib pmin est ", scalar(@distrib), "\n"; # sort {$a <=> $b} @distrib; # trie du plus petit au plus grand my $compte=0; foreach my $elem (@distrib) { $compte ++; #DEBUG print STDERR "elem=$elem\n"; if ($elem<=$pmin_min) { $p_finale ++; } } # } else { return $p_finale/$compte; # } } ########################################################### sub manage_options { my %options; my $result; my $choix={ "data-type" => { "snp" => DataType::SNP, "dna" => DataType::DNA, }, "data-qual" => { "quantitative" => DataQual::QUANTI, "qualitative" => DataQual::QUALI, }, "rootmeth" => { "outgroup" => RootMeth::OUTG, "ancestor" => RootMeth::ANC, }, "tree-building-program" => { "phylip" => PhylProg::PHYLIP, "paup" => PhylProg::PAUP, "paml" => PhylProg::PAML, }, "splitmode" => { "chi2split" => SplitMode::CHI2SPLIT, "nosplit" => SplitMode::NOSPLIT, }, "co-evo" => { "simple" => CoEvo::SIMPLE, "double" => CoEvo::DOUBLE, }, }; my $handle_choix = sub { my $option=shift; my $value=shift; foreach my $key (keys %{$choix->{$option}}) { if ($key=~/^$value/i) { $options{$option."-value"}=$choix->{$option}->{$key}; return; } } die "Option '$option': unauthorized value '$value'\n"; }; my $handle_args = sub { my $name=shift; die "What about '$name' ?\n"; }; my $handle_progname = sub { my $name=shift; die "What about '$name' ?\n"; }; %options=("<>" => $handle_args); foreach my $option (keys %{$choix}) { $options{$option}=$handle_choix; } GetOptions (\%options, "version", "short-help|h", "help", "man", "association|a!", # !!! demander pour le ! à Vince "s-localisation|l!", "first-input-file|i=s", "second-input-file|j=s", "output-file|o=s", "data-type|t=s", "data-qual|q=s", "remove-outgroup!", "outgroup=s", "tree-building-program|p=s", "splitmode|s=s", "no-prolongation!", "chi2-threshold|n=f", "permutations|r=i", "number-of-trees-to-analyse=i", "tree-to-analyse=i@", "s-site-number=i", "s-site-characters=s", "co-evo|e=s", "print-tree!", "anc-seq=s", "nb-files=i", "<>", ) or pod2usage(2); if (defined($options{"version"})) { print $0, " version ", $VERSION, "\n"; print "(Perl version ", $], ")\n"; exit 0; } if (defined($options{"short-help"})) { pod2usage(-exitstatus => 0, -verbose => 0); } if (defined($options{"help"})) { pod2usage(-exitstatus => 0, -verbose => 1); } if (defined($options{"man"})) { pod2usage(-exitstatus => 0, -verbose => 2); } delete($options{"<>"}); foreach my $option (keys %{$choix}) { delete($options{$option}); if (exists($options{$option."-value"})) { $options{$option}=$options{$option."-value"}; delete($options{$option."-value"}); } } return \%options; } sub main { my($rec_program); my $result; my $options; my $option_require = sub { my $option=shift; my $texte=shift; if (not exists($options->{$option})) { my $msg="Error: option '$option' needed"; if (defined($texte)) { $msg.="\n".$texte; } pod2usage("Error: option '$option' required"); } }; my $option_value = sub { my $option=shift; my $default=shift; my $msg=shift; if (not exists($options->{$option})) { if (defined $msg) { print STDERR $msg, "\n"; } return $default; } return $options->{$option}; }; my $option_selected = sub { my $option=shift; my $texte=shift; if (not exists($options->{$option})) { my $msg="option '$option' not selected"; if (defined($texte)) { $msg.="\n".$texte; } return 0; } else { return 1; } }; $options=manage_options(); my($prolonge)=$option_value->("prolongation", 1); my($print_tree)=$option_value->("print-tree", 0); $option_require->("tree-building-program"); my($phylo_program)=$option_value->("tree-building-program"); my($association)=$option_value->("association", 0); my $nb_files = $option_value->("nb-files", 0); if ($nb_files == 0) { $nb_files=1 } $option_require->("first-input-file"); my $input_files=$option_value->("first-input-file"); my @input_files=split(/:/, $input_files); my $nb_read_files = scalar(@input_files); if ($nb_read_files != $nb_files) { erreur("The number of files really given ($nb_read_files) is not equal to". " the number of files specified in the option --nb-files ($nb_files)\n",0) } # name of the file containing haploID, nb case and nb control my($tot_name_corres)=$option_value->("second-input-file", "correspond.txt"); my @tab_name_corres = split(/:/, $tot_name_corres); my($s_loc)=$option_value->("s-localisation", 0); if (!$association && !$s_loc) { erreur("Should I perform the association test or the". " localisation test ?\n(use option '--association'". " or '--s-localisation'.)\n", 1); } if ($option_selected->("output-file")) { my $out=$option_value->("output-file"); open(STDOUT, '>', $out) or erreur("Unable to write in '$out': $!\n", 0); } my $datatype; my $ancetre=""; if ($phylo_program == PhylProg::PHYLIP) { $option_require->("data-type"); $datatype=$option_value->("data-type"); if ($option_selected->("anc-seq")) { $ancetre=$option_value->("anc-seq"); } } my $dataqual=""; if ($association == 1) { $option_require->("data-qual"); $dataqual = $option_value->("data-qual"); } ########################################################### # Récupération et précalcul des arbres qu'on va utiliser ########################################################### my @trees; my @res_files; #contient les ref sur les résultats de chaque fichier analysé my($all_files_foret)=ALTree::Foret->New(); my $s_site_nb; { for (my $file=1; $file<=$nb_files; $file ++) { my $input=$input_files[$file-1]; #DEBUG print STDERR $input, "\n"; print STDERR "Analyzing file number $file\n"; my ($input_file)=ALTree::Input::ReadInputFile1($input, $phylo_program, $datatype, $ancetre); my $num_trees_in_file=$input_file->{"nb_trees"}; my(@no_tree); my($user_tree_numbers)=$option_value->("tree-to-analyse", \@no_tree); my $tree_numbers=check_tree_numbers($num_trees_in_file, $user_tree_numbers); my $nb_tree_selected=scalar(@{$tree_numbers}); if ($association) { if ($nb_tree_selected == 0) { $tree_numbers=select_trees($num_trees_in_file, 1); } elsif ($nb_tree_selected > 1) { erreur("Only one tree can be selected for association\n"); } } if ($s_loc) { if ($nb_tree_selected == 0) { my($trees_to_analyse)= $option_value->("number-of-trees-to-analyse", undef); if (not defined($trees_to_analyse)) { print STDERR "Warning: no option". "number-of-trees-to-analyse or tree-to-analyse:". " using all ($num_trees_in_file)". " trees"; $trees_to_analyse=$num_trees_in_file; } if ($trees_to_analyse>$num_trees_in_file) { erreur("Invalid number of trees to analyse :". " your file contains only". " $num_trees_in_file trees\n", 0); } if ($trees_to_analyse<1) { erreur("Not enought trees to analyse". " ($trees_to_analyse)\n", 0); } $tree_numbers=select_trees($num_trees_in_file, $trees_to_analyse); } elsif ($nb_tree_selected > $num_trees_in_file) { erreur("Invalid number of trees to analyse :". " your file contains only". " $num_trees_in_file trees\n", 0); } } my $anctype=$input_file->{"anctype"}; if ($anctype == ANC::Rooted && ($option_selected->("outgroup") || $option_selected->("remove-outgroup"))) { erreur("You cannot use the options '--outgroup' or". " '--remove-outgroup' because your input file '" .$input_file->{"filename"}."' contains trees rooted". " with an ancestral sequence.\n", 1); } if ($anctype == ANC::OutGroup) { my $outgroup=$input_file->{"outgroup"}; if (defined($outgroup)) { if ($option_value->("outgroup", $outgroup) ne $outgroup) { erreur("The option '--outgroup' tell me to use '". $option_value->("outgroup")."' as an outgroup ". "whereas the file '".$input_file->{"filename"}. "' contains trees rooted with the outgroup '". $outgroup."'.\n", 1); } } else { $input_file->{"outgroup"}=$option_value->("outgroup", undef); } } my ($switchroot)=""; if ($anctype == ANC::Unrooted) { $input_file->{"outgroup"}=$option_value->("outgroup", undef); $switchroot=$option_value->("outgroup", 0); } if ($option_selected->("remove-outgroup") && not defined($input_file->{"outgroup"})) { if ($anctype == ANC::OutGroup) { erreur("You tell me to remove the outgroup for the". " analyses. ". "The input file '".$input_file->{"filename"}. "' contains trees rooted using ". "an outgroup but I cannot automaticaly find which". "one has been used.\nPlease, provide me the". "outgroup (option '--outgroup')\n", 0); } else { erreur("You tell me to remove the outgroup for the". " analyses, ". "however, I do not know what is the outgroup\n". "Please, use the '--outgroup' option\n", 0); } } if ($association && $anctype == ANC::Unrooted && not defined($input_file->{"outgroup"})) { erreur("I need a rooted tree to perform the association". " test. However, the input file '". $input_file->{"filename"}."' contains unrooted trees\n". "Please, provide me an outgroup (option '--outgroup')\n" , 1); #erreur("I need a rooted tree to perform the association". # " test.\nThe input file '".$input_file->{"filename"}. # "' contains trees rooted using ". # "an outgroup\nbut I cannot automaticaly find which one". # " has been used.\nPlease, provide me the outgroup". # " (option '--outgroup')\n" # , 1); } my $remove_outgroup=$option_value->("remove-outgroup", 0); my @trees =(); for my $num_tree (@{$tree_numbers}) { my $file_tree=PrepareTree($phylo_program, $input_file, $datatype, $ancetre, $num_tree); push @trees, $file_tree; my ($tree)=$file_tree->{"tree"}; my $outgroup; if (defined($input_file->{"outgroup"})) { $outgroup=$tree->GetNode($input_file->{"outgroup"}); if (not defined($outgroup)) { erreur ("I cannot find the outgroup '". $input_file->{"outgroup"}."' in the". " tree number ".($file_tree->{"index"}+1). " in file '".$input_file->{"filename"}. "'. It does not correspond to any node!\n", 0); } if (!$switchroot) { if ($outgroup->GetFather() != $tree->GetRoot()) { erreur("The outgroup '".$outgroup->Name(). "' is not just under the root ". "for the tree number ". ($file_tree->{"index"}+1). " in file '".$input_file->{"filename"}. "'.\nDo you choose the rigth outgroup ?\n", 0); } } } if ($switchroot) { SwitchRoot($tree, $outgroup); } if ($remove_outgroup) { RemoveOutgroup($tree, $outgroup); } if ($print_tree) { PrintTree($tree); } if ($s_loc && defined($file_tree->{"has_ambiguity"})) { erreur("Some apomorphies are ambiguous in the". " tree number ".($file_tree->{"index"}+1). " in file '".$input_file->{"filename"}. "' (I find the character state '?').". " It cannot be used for the localisation test.\n", 0); } } print STDERR "read done\n"; ########################################################### # Let's go. D'abord pour l'association ########################################################### if ($association == 1) { my($splitmode)=SplitMode::NOSPLIT; # nosplit est imposé # name of the file containing haploID, nb case and nb control my($name_corres)= $tab_name_corres[$file-1]; if ($name_corres eq "") { die "check the number of file containing case/controle. There should ". "be as many such files as first input files\n"; } my($correspondance); # ref on a hash containing haploID refferring to # a hash containing nb case and nb control # or to a tab containing the different quantitative values if ($dataqual == DataQual::QUALI) { $correspondance=ALTree::Input::ReadCorrespondQuali($name_corres); } elsif ($dataqual == DataQual::QUANTI) { $correspondance=ALTree::Input::ReadCorrespondQuanti($name_corres); } else { erreur("invalid choice for option data-qual, $dataqual. It should be either qualitative or quantitative", 0); } my($file_tree)=$trees[0]; my($tree)=$file_tree->{"tree"}; my($outgroup)=$file_tree->{"file"}->{"outgroup"}; if (CheckCorrespondance($tree, $correspondance, $name_corres, $outgroup)) { if (!$option_selected->("remove-outgroup")) { print STDERR "Warning: assuming option '--remove-outgroup' as". " the outgroup '".$outgroup. "' is not in the file '".$name_corres."'\n"; RemoveOutgroup($tree, $tree->GetNode($outgroup)); } } else { if ($option_selected->("remove-outgroup")) { erreur("You tell me to remove the outgroup '$outgroup',". " however it is present in the file '". $name_corres.". Please, check your data.'\n", 0); } } #print "\n"; FusionBrNulles($tree->GetRoot()); # Structure changée, on recalcul... $tree->FillHeight(); $tree->FillLevel(); if ($dataqual == DataQual::QUALI) { FillCaseControl($tree->GetRoot(),$correspondance); } else { FillQuanti($tree->GetRoot(),$correspondance); } print "\n"; my $racine=$tree->GetRoot(); my @children=$racine->GetChildrenList(); # EN DEVELOPPEMENT: NANOVA # { # my $mat; # print "TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT\n"; # $mat=ALTree::Nanova::Tree2mat($tree->GetRoot()); # ALTree::Nanova::WriteMat($mat); # my $values = []; # my $groups = []; # my $nb_term=0; # ALTree::Nanova::FillTableaux($tree->GetRoot(), $values, $groups, $nb_term); # print "Values:\n"; # foreach my $val (@{$values}) { # print $val, "\t"; # } # print "\n"; # print "Groups:\n"; # foreach my $group (@{$groups}) { # print $group, "\t"; # } # print "\n"; # print "*********\n"; # my $una_results; # $una_results = NAnova::UnbalancedNestedANOVA($mat, $groups, $values); # my $i=1; # foreach my $res (@{$una_results}) { # print "Level $i\tF=",$res->{"F"}, "\tp-value=",$res->{"p_value"}, "\n"; # $i++; # } # } # print "TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT\n"; $option_require->("permutations", "The number of permutations used to calculate". " exact p-values must be specified or set to 0\n"); my $permutation=$option_value->("permutations"); my($sign_util); if ($permutation==0) { #TODO, passer quanti my($seuil_chi2)=$option_value->("chi2-threshold", 0.01, "Using default chi2 threshold 0.01"); ALTree::Chi2::definition_p_chi2($seuil_chi2, 0.01); # mettre une option # pour seuil test_prop $sign_util = SignUtil::YES # on a besoin de la significativité } elsif ($permutation>0) { $sign_util = SignUtil::NO; # on n'a pas besoin de la sign } else { die "invalid value for the number of permutation: $permutation\n"; } print STDERR "Starting tree analysis\n"; if ($dataqual == DataQual::QUALI) { parcours_nosplit_chi2split(\@children, $prolonge, $splitmode, $racine, $sign_util); } else { ParcoursQuanti(\@children, $prolonge, $splitmode, $racine, $sign_util); } { print STDERR "Starting permutations\n"; if ($permutation==0) { if ($dataqual == DataQual::QUALI) { AffichageArbre($racine, \&TestInfos); } else { AffichageArbre($racine, \&InfosQuantiNoperm); } } elsif ($permutation>0) { my($value_per_line, $corrected_values); if ($dataqual == DataQual::QUALI) { AffichageArbre($racine, \&AssociationInfos); } else { AffichageArbre($racine, \&InfosQuanti); } ($value_per_line, $corrected_values)=RepeatAssociation ($tree, $dataqual, $correspondance, $prolonge,$permutation); print "\n"; print "p_val for each level:\n"; my($i); for ($i=0; $i<$value_per_line; $i++) { print "level ", $i+1, " p-value (non corrected) ", $corrected_values->{"chi2"}->[$i], "\n"; } print "corrected minimal p_value in the tree: ", $corrected_values->{"pmin"}, "\n";# at level TODO\n"; if ($nb_files>1) { $res_files[$file-1]=$corrected_values; #print STDERR "RRR", $res_files[$file-1]->{"distrib_pmin"}->[O], "\n"; } } else { die "invalid value for the number of permutation: $permutation\n"; } } } ########################################################### # Let's go. Et pour la localisation ########################################################### if ($s_loc==1) { #$option_require->("splitmode"); #my($splitmode)=$option_value->("splitmode"); print "Localisation method using S-character\n"; $option_require->("s-site-number"); $s_site_nb=$option_value->("s-site-number"); $option_require->("s-site-characters"); my($s_char_state)=$option_value->("s-site-characters"); $option_require->("co-evo"); my($co_evo_type)=$option_value->("co-evo"); # print "co_evo_type=$co_evo_type\n"; #DEBUG print "s_char_state=$s_char_state\n"; if (not ($s_char_state =~ m/([A-Za-z0-9]+)\s*[-=_]*[>]\s*([A-Za-z0-9]+)/)) { erreur("Invalid character change for character". " S. It should be Anc -> Der\n", 0); } my($s_anc)=$1; my($s_der)=$2; my($s_state)= ALTree::Sens->New($s_anc." --> ".$s_der); my($foret)=ALTree::Foret->New(); #$Data::Dumper::Indent = 0; for my $file_tree (@trees) { my $tree=$file_tree->{"tree"}; my ($b_t)=$tree->GetNbBrNonNulle(); # print "NB branches: $b_t\n"; my $site=$tree->GetSite($s_site_nb); if (not defined($site)) { erreur("Invalid value ($s_site_nb) for". " --s-site-number\n", 0); } my($s_t, $s_t_rev)=CalculateRit($tree, $s_site_nb, $s_state, $co_evo_type); CalculateEit($tree, $s_site_nb, $s_t, $s_t_rev, $b_t); $foret->AddTree($tree); $all_files_foret->AddTree($tree); } $foret->CalculVi(); #PrintAllVit($foret, $s_site_nb);# Non trié #PrintViMax($foret, $s_site_nb); # Affiche la liste en choisissant #pour chaque sit, juste le meilleur sens print "\n"; print "Results:\n"; PrintViMaxSens($foret, $s_site_nb); } } if ($association == 1) { if ($nb_files>1) { my $p_finale = TraiteSeveralFiles(\@res_files, $nb_files); print "\n############################################\n"; print "p_value for the $nb_files files = $p_finale\n"; } } if ($s_loc == 1) { if ($nb_files>1) { $all_files_foret->CalculVi(); print "\n############################################\n"; print "Results for all the files\n"; PrintViMaxSens($all_files_foret, $s_site_nb); } } } } sub PleinInfos { my $node=shift; my $suite=""; #"\nligne suivante\net encore après\n "; if (defined ($node->{"father"})) { return Name($node). "\nFrom: ". Name($node->{"father"}).$suite; } else { return Name($node).$suite; } } use FileHandle; use IPC::Open2; sub my_test { my $pid; $pid = open2(*Reader, *Writer, "phylip mix" ); print Writer "r\no\n6\nw\na\n5\ny\nweight\nr\n"; while () { print "PHYL: ", $_; } } #my_test; #exit 0; main; #man perlpod __END__ =head1 NAME altree - Association and Localisation tests using phylogenetic Trees =head1 SYNOPSIS altree [options] Options: --version program version --short-help|h brief help message --help help message with options descriptions --man full documentation --association|a perform the association test --s-localisation|l perform the localisation using the S character --first-input-file|i result_file from phylogeny reconstruction programs --second-input-file|j file containing the nb of cases/controls carrying an haplotype --output-file|o output_file --data-type|t DNA|SNP --data-qual|q qualitative|quantitative --outgroup outgroup_name --remove-outgroup --tree-building-program|p phylip|paup|paml --splitmode|s nosplit|chi2split --no-prolongation --chi2-threshold|n value --permutations|r number --number-of-trees-to-analyse number --tree-to-analyse number --s-site-number number --s-site-characters ancestral state -> derived state --co-evo|e simple|double --print-tree --anc-seq ancestral sequence (only with phylip) --nb-files number of input files to analyse (only for association test) =head1 OPTIONS =over 8 =item B<--version> Print the program version and exits. =item B<--short-help> Print a brief help message and exits. =item B<--help> Print a help message with options descriptions and exits. =item B<--man> Prints the manual page and exits. =item B<--association|a> Perform the association test =item B<--s-localisation|l> Localise the susceptibility locus using the "S-character method" =item B<--first-input-file|i> F Input file 1 (paup, phylip or paml results file). If several input files are analysed, their names must be separated by colons. Example: input1:input2 etc =item B<--second-input-file|j> F Input file 2, default F. The number of input file 2 must be the same as the number of input file 1. The name of the different input file 2 must be separated by colons =item B<--output-file|o> F Output file =item B<--data-type|t> C|C Type of data: DNA (ATGCU) or SNP (0-1) =item B<--data-qual|q> C|C Analyse qualitative (case/control) or quantitative data =item B<--outgroup> outgroup Root the tree with this outgroup =item B<--remove-outgroup> Remove the outgroup of the tree before performing the tests =item B<--tree-building-program|p> C|C|C Phylogeny reconstruction program =item B<--splitmode|s> C|C how tests are performed from a level to another =item B<--no-prolongation> No prolongation of branches in the tree =item B<--chi2-threshold|n> value Significance threshold for chi2 (default value 0.01) =item B<--permutations|r> number Number of permutations used to calculate exact p_values (Only for association test) =item B<--number-of-trees-to-analyse> number Number of trees to analyse in the localisation analysis (only for localisation method using S-character) =item B<--tree-to-analyse> number With this option, you can specify the tree to use (instead of random). Can be used several times to specify multiple trees. =item B<--s-site-number> number Number of the S character site in the sequence (only for localisation method using S-character) =item B<--s-site-characters> transition Character states for the S character: ancestral state -> derived state ex: G->C or 0->1 (only for localisation method using S-character) =item B<--co-evo|e> C|C Type of co-evolution indice simple: only the anc -> der transition of S is used double: the two possible transitions are used =item B<--print-tree> If this option is selected, the tree will be printed to the output =item B<--anc-seq> anc_seq With this option, you can specify the ancestral sequence. This option is only useful when the tree is reconstructed using the mix program of phylip with the ancestral states specified in the file "ancestors" =item B<--nb-files> number With this option, you specify the number of input files (1 and 2) to analyse This option only works for the association test. Be careful if the number of trees is not the same for the different input files: if the chosen tree doesn't exist in one file, the program wil not work correctly =back =head1 DESCRIPTION B performs (a) an association test between a candidate gene and disease or a quantitative trait (b) a localsation tests: it allows to detect which SNP is involved in the determinism of the disease or the quantitative trait These two tests are based on the analysis of haplotype phylogenetic trees. =cut altree-v1.3.1/ALTree/0000755000175000017500000000000012252703410014424 5ustar vdanjeanvdanjeanaltree-v1.3.1/ALTree/SitePerTree.pm0000644000175000017500000000155412043315246017166 0ustar vdanjeanvdanjeanpackage ALTree::SitePerTree; ################################################################ ################################################################ ####################### SitePerTree ########################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::Site); use ALTree::SiteSensPerTree; # Structure SitePerTree # "site_nb" -> Integer # "sens_struct" -> Hash of ('sens_label' -> SiteSens) # "nb_mut" -> Integer sub New { # [classe] site_nb my $class=shift; my $self={}; my $site_nb=shift; bless($self, $class); $self->InitSite($site_nb); $self->_init("nb_mut" => 0, @_); return $self; } sub NewSens { my $self=shift; my $sens=shift; return ALTree::SiteSensPerTree->New($sens, $self); } 1; altree-v1.3.1/ALTree/Foret.pm0000644000175000017500000000540112043315246016045 0ustar vdanjeanvdanjeanpackage ALTree::Foret; ################################################################ ################################################################ ####################### Foret ######################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::SiteCollection); sub New { # [classe] my $class=shift; my $self={}; bless($self, $class); $self->InitSiteCollection(); $self->_init(@_); $self->Debug("creating Foret\n"); return $self; } sub AddTree { my $self=shift; push @{$self->{"trees"}}, @_; } sub GetTree { my $self=shift; my $index=shift; return $self->{"trees"}->[$index]; } sub GetTreesList { my $self=shift; return @{$self->{"trees"}}; } sub ProvideSite { my $self=shift; my $site_nb=shift; if (not $self->HasSiteIndex($site_nb)) { $self->AddSite(ALTree::SitePerForet->New($site_nb)); } return $self->GetSite($site_nb); } sub CalculVi { my $self=shift; foreach my $tree ($self->GetTreesList()) { foreach my $site ($tree->GetSitesList()) { foreach my $sens ($site->GetSensList()) { $self->ProvideSite($site->GetSiteNb()) ->ProvideSens($sens->GetSensStruct()) ->PlusVi($sens->GetVit()); } } } } sub _EnsureViMax { my($self)=shift; if (not exists ($self->{"V_i_max"})) { my @tab_trie=sort { $b->GetViMax() <=> $a->GetViMax()} $self->GetSitesList(); $self->{"V_i_max"}=$tab_trie[0]->GetViMax(); $self->{"V_i_max_tab"}=\@tab_trie; } } sub GetViMax { my $self=shift; $self->_EnsureViMax(); return $self->{"V_i_max"}; } sub GetViMaxSite { my($self)=shift; my($index)=shift; $self->_EnsureViMax(); return $self->{"V_i_max_tab"}->[$index]; } sub GetViMaxSiteList { my($self)=shift; $self->_EnsureViMax(); return @{$self->{"V_i_max_tab"}}; } sub NbViMaxSite { my($self)=shift; $self->_EnsureViMax(); return (scalar @{$self->{"V_i_max_tab"}}); } sub _EnsureViMaxSens { my($self)=shift; if (not exists ($self->{"V_i_max_sens_tab"})) { my @tab_trie=sort { $b->GetVi() <=> $a->GetVi() } map { $_->GetSensList(); } $self->GetSitesList(); #if ($tab_trie[0]->GetVi() != $self->GetViMax()) { # die "Arghh\n"; #} $self->{"V_i_max_sens_tab"}=\@tab_trie; } } sub GetViMaxSens { my($self)=shift; my($index)=shift; $self->_EnsureViMaxSens(); return $self->{"V_i_max_sens_tab"}->[$index]; } sub GetViMaxSensList { my($self)=shift; $self->_EnsureViMaxSens(); return @{$self->{"V_i_max_sens_tab"}}; } sub NbViMaxSens { my($self)=shift; $self->_EnsureViMaxSens(); return (scalar @{$self->{"V_i_max_sens_tab"}}); } 1; altree-v1.3.1/ALTree/Import.pm0000644000175000017500000000375212164123415016246 0ustar vdanjeanvdanjeanpackage ALTree::Import; use strict; use ALTree::Utils; use ALTree::Input; use ALTree::Sens; use ALTree::Tree; use ALTree::Foret; use ALTree::Node; use ALTree::SitePerTree; use ALTree::SitePerForet; use ALTree::SiteSensPerForet; BEGIN { use Exporter (); our ($VERSION, @ISA, @EXPORT, @EXPORT_OK, %EXPORT_TAGS); # set the version for version checking $VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); # sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(); #%EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(); } #our @EXPORT_OK; INIT { } # exported package globals go here #our $Var1; #our %Hashit; # non-exported package globals go here #our @more; #our $stuff; # initialize package globals, first exported ones #$Var1 = ''; #%Hashit = (); # then the others (which are still accessible as $Some::Module::stuff) #$stuff = ''; #@more = (); # all file-scoped lexicals must be created before # the functions below that use them. # file-private lexicals go here #my $priv_var = ''; #my %secret_hash = (); # here's a file-private function as a closure, # callable as &$priv_func; it cannot be prototyped. #my $priv_func = sub { # # stuff goes here. #}; # make all your functions, whether exported or not; # remember to put something interesting in the {} stubs #sub func1 {} # no prototype #sub func2() {} # proto'd void #sub func3($$) {} # proto'd to 2 scalars # this one isn't exported, but could be called! #sub func4(\%) {} # proto'd to 1 hash ref END { } # module clean-up code here (global destructor) ################################################################## # Fonctions de seuil du chi2 (pré-calcul puis stockage dans un tableau) 1; altree-v1.3.1/ALTree/Chi2.pm0000644000175000017500000000552112164123415015555 0ustar vdanjeanvdanjeanpackage ALTree::Chi2; use strict; use ALTree::CUtils; BEGIN { use Exporter (); our ($VERSION, @ISA, @EXPORT, @EXPORT_OK, %EXPORT_TAGS); # set the version for version checking $VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); # sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(NON_SIGNIFICATIF SIGNIFICATIF &chi2_significatif &definition_p_chi2 &reech_chi2); #%EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(); } #our @EXPORT_OK; INIT { } # exported package globals go here #our $Var1; #our %Hashit; # non-exported package globals go here #our @more; #our $stuff; # initialize package globals, first exported ones #$Var1 = ''; #%Hashit = (); # then the others (which are still accessible as $Some::Module::stuff) #$stuff = ''; #@more = (); # all file-scoped lexicals must be created before # the functions below that use them. # file-private lexicals go here #my $priv_var = ''; #my %secret_hash = (); # here's a file-private function as a closure, # callable as &$priv_func; it cannot be prototyped. #my $priv_func = sub { # # stuff goes here. #}; # make all your functions, whether exported or not; # remember to put something interesting in the {} stubs #sub func1 {} # no prototype #sub func2() {} # proto'd void #sub func3($$) {} # proto'd to 2 scalars # this one isn't exported, but could be called! #sub func4(\%) {} # proto'd to 1 hash ref END { } # module clean-up code here (global destructor) use constant NON_SIGNIFICATIF => 0; use constant SIGNIFICATIF => 1; ################################################################## # Fonctions de seuil du chi2 (pré-calcul puis stockage dans un tableau) # test de significativité. Doit retourner vrai ou faux. sub chi2_significatif { my ($ddl) = shift; my ($chi2) = shift; return ALTree::CUtils::Chi2Significatif($ddl, $chi2); } sub definition_p_chi2 #Utilisé aussi pour le test F { my($p)=shift; my($pprop)=shift; ALTree::CUtils::DefinitionPChi2($p, $pprop); } sub chi2_fisher_significatif { my($pvalue)=shift; return ALTree::CUtils::Chi2FisherSignificatif($pvalue); } ################################################################## # Rééchantillonnage sub reech_chi2 { my $sum_malade=shift; my $sum_controle=shift; my $nb_fils=shift; my($chi2_reel)=shift; my $clades=shift; return ALTree::CUtils::ReechChi2($sum_malade, $sum_controle, $nb_fils, $chi2_reel, $clades); } sub reech_significatif { my($p_val)=shift; return ALTree::CUtils::ReechSignificatif($p_val) } 1; altree-v1.3.1/ALTree/Sens.pm0000644000175000017500000000265712043315246015710 0ustar vdanjeanvdanjeanpackage ALTree::Sens; ################################################################ ################################################################ ####################### Sens ########################## ################################################################ ################################################################ use base 'ALTree::Base'; #Creation d'une structure sub New { # [classe] sens my $class=shift; my $self={}; my $sens=shift; bless($self, $class); if ($sens !~ /^\s*([0-9a-zA-Z?]+)\s*[-=_]*[>]\s*([0-9a-zA-Z?]+)\s*$/) { die "Invalid sens : $sens\n"; } $self->_init("start" => $1, "end" => $2, "switch" => 0, @_); return $self; } #Creation d'une structure sub NewRev { # [classe] sens my $class=shift; my $self={}; my $sens=shift; bless($self, $class); $self->_init("start" => $sens->{"end"}, "end" => $sens->{"start"}, "switch" => 0, @_); return $self; } sub _makeLabel { my $self=shift; my $start=shift; my $end=shift; if ($self->{'switch'}) { return $end."-->".$start; } else { return $start."-->".$end; } } sub GetLabel { my $self=shift; return $self->_makeLabel($self->{"start"}, $self->{"end"}); } sub GetLabelRev { my $self=shift; return $self->_makeLabel($self->{"end"}, $self->{"start"}); } sub Switch { my $self=shift; $self->{'switch'} = 1-$self->{'switch'}; } 1; altree-v1.3.1/ALTree/to_rewrite.pm0000644000175000017500000002211012045215411017140 0ustar vdanjeanvdanjean package main; use strict; use diagnostics; use warnings; use ALTree::Chi2 (); use ALTree::Import; use ALTree::Utils qw(erreur); use ALTree::Input qw(PrepareTree); #use Newchi2treeUtils; use Math::TamuAnova; sub parcours_nosplit_chi2split { my($tabnodes_a_traiter)=shift; my($prolonge)=shift; my($splitmode)=shift; my($node_ecriture)=shift; my($sign_util)=shift; # vaut 1 si on a besoin de la significativité, 0 sinon my($node, $child, @tab_noeuds_suivants); my($val)=0; my($test, $p_val); my($test_results); $test_results->{"ddl"}=scalar(@{$tabnodes_a_traiter})-1; # Nb branches -1 # $test n'est valable que si $sign_util est à YES ($p_val, $test)=CalculChi2($tabnodes_a_traiter, $test_results->{"ddl"}, $test_results, $sign_util ); $test_results->{"node_teste"}=$node_ecriture; push (@{$node_ecriture->{"res_test"}}, $test_results); $test_results->{"level"}=scalar(@{$node_ecriture->{"res_test"}})-1; if ($sign_util== SignUtil::YES && $test==1 && $splitmode == SplitMode::CHI2SPLIT) { # sign et que on on est en chi2split foreach $node (@{$tabnodes_a_traiter}) { if (NbFils($node) != 0) { my @children=$node->GetChildrenList(); parcours_nosplit_chi2split(\@children, $prolonge, $splitmode, $node); } } } elsif ($sign_util== SignUtil::NO || $test==0 || $splitmode == SplitMode::NOSPLIT) { # ou alors on est en nosplit foreach $node (@{$tabnodes_a_traiter}) { if (NbFils($node) != 0) { $val=1; foreach $child ($node->GetChildrenList()) { push (@tab_noeuds_suivants, $child); } } else { if ($prolonge == 1) { push (@tab_noeuds_suivants, $node); } } } if ($val==1) { parcours_nosplit_chi2split(\@tab_noeuds_suivants, $prolonge, $splitmode, $node_ecriture, $sign_util); } else { return; } } } sub ParcoursQuanti { my($tabnodes_a_traiter)=shift; my($prolonge)=shift; my($splitmode)=shift; my($node_ecriture)=shift; my($sign_util)=shift; # vaut 1 si on a besoin de la significativité, 0 sinon my($node, $child, @tab_noeuds_suivants); my($val)=0; my($test, $res_anova); my($test_results); # $test_results->{"ddl"}=scalar(@{$tabnodes_a_traiter})-1; # Nb branches -1 my @valeurs; my @facteurs; my $i=0; #DEBUG print STDERR "TTTT ", scalar (@{$tabnodes_a_traiter}), "\n"; foreach $node (@{$tabnodes_a_traiter}) { $i++; foreach my $case (@{$node->{"quanti"}}) { push (@valeurs, $case->[0]); push (@facteurs, $i); } } my $nb_factors=$i; $test_results->{"nb_facteurs"}=$nb_factors; # DEBUG print STDERR "node "; # for (my $i=0; $i<=$#valeurs; $i++) { # print STDERR " $valeurs[$i]"; # print STDERR " ($facteurs[$i])"; # } # print STDERR "\n"; # if ($sign_util==SignUtil::YES) { ($res_anova, $test)=CalculAnovaOneWay($tabnodes_a_traiter, \@valeurs, \@facteurs, $test_results, $sign_util, $nb_factors ); # } elsif ($sign_util==SignUtil::NO) { # ($res_anova)=CalculAnovaOneWay($tabnodes_a_traiter, \@valeurs, \@facteurs, $test_results, $sign_util, $nb_factors); # } $test_results->{"node_teste"}=$node_ecriture; push (@{$node_ecriture->{"res_test"}}, $test_results); $test_results->{"level"}=scalar(@{$node_ecriture->{"res_test"}})-1; if ($sign_util== SignUtil::YES && $test==ALTree::Chi2::SIGNIFICATIF && $splitmode == SplitMode::CHI2SPLIT) { # sign et que on on est en chi2split foreach $node (@{$tabnodes_a_traiter}) { if (NbFils($node) != 0) { my @children=$node->GetChildrenList(); ParcoursQuanti(\@children, $prolonge, $splitmode, $node); } } } elsif ($sign_util== SignUtil::NO || $test==ALTree::Chi2::NON_SIGNIFICATIF || $splitmode == SplitMode::NOSPLIT) { # ou alors on est en nosplit foreach $node (@{$tabnodes_a_traiter}) { if (NbFils($node) != 0) { $val=1; foreach $child ($node->GetChildrenList()) { push (@tab_noeuds_suivants, $child); } } else { if ($prolonge == 1) { push (@tab_noeuds_suivants, $node); } } } if ($val==1) { ParcoursQuanti(\@tab_noeuds_suivants, $prolonge, $splitmode, $node_ecriture, $sign_util); } else { return; } } else { die("Arghhh"); } } sub CalculChi2 { my($tabnodes_a_traiter)=shift; my($ddl)=shift; my($test_results)=shift; my($sign_util)=shift; return ALTree::CUtils::CalculChi2($tabnodes_a_traiter, $ddl, $test_results, $sign_util); } sub CalculAnovaOneWay { my $tabnodes_a_traiter=shift; my $valeurs=shift; my $facteurs=shift; my $test_results =shift; my $sign_util=shift; my $nb_factors=shift; my $significatif=ALTree::Chi2::NON_SIGNIFICATIF; my $res_anova; if (scalar (@{$tabnodes_a_traiter}) < 2) { $test_results->{"texte"}= "Only one category"; if ($sign_util==SignUtil::YES) { $significatif=ALTree::Chi2::NON_SIGNIFICATIF; } } else { if (scalar (@{$valeurs}) != scalar (@{$facteurs})) { erreur("Error in the anova data: the number of values ", scalar @${valeurs}, " and the number of factors ", scalar @{$facteurs}, " should be the same\n"); } else { $res_anova=Math::TamuAnova::anova($valeurs, $facteurs, $nb_factors); #DEBUG print STDERR $nb_factors, " ", scalar(@{$valeurs}), "\n"; $test_results->{"F"}=$res_anova->{"F"}; $test_results->{"p_val"}= $res_anova->{"p"}; # $test_results->{"warning"}.=" ($p_value)"; if ($sign_util==SignUtil::YES) { $significatif = ALTree::Chi2::chi2_fisher_significatif($res_anova->{"p"}); } } } if ($sign_util==SignUtil::YES) { if ($significatif) { $test_results->{"sign"}=ALTree::Chi2::SIGNIFICATIF; #$test_results->{"texte"}.="significatif"; } else { $test_results->{"sign"}=ALTree::Chi2::NON_SIGNIFICATIF; # $test_results->{"texte"}.="non significatif"; } } return ($res_anova, $significatif); #DEBUG if (defined ($res_anova)) { #DEBUG print STDERR "RESANOVA ", $res_anova->{"F"}, " ", $res_anova->{"p"}, "\n"; } sub InfosAffichees { my($node)=shift; my($mode)=shift; my($chaine)=Name($node); my($lbl_test)=0; my $test; $chaine.=" (LEVEL: ".$node->{"level"}.")"; if ($mode==1 || $mode == 2) { # Affiche ou pas les case/control $chaine.=" case/control:".$node->{"case"}."/".$node->{"control"}; } if ($mode==3 || $mode == 4) { $chaine.= sprintf " mean:%.2f",$node->GetQuantiMean(); } if (1) { # affiche les apomorphies $chaine.="\n"; foreach my $apo ($node->GetApoList()) { $chaine.= (" Site: ".$apo->GetSiteNb." Sens: ".$apo->GetSensLabel()."\n"); } } $chaine.="\n"; if ($mode==1 || $mode == 2) { # affiche ou pas les ddl if (defined $node->{"res_test"}) { for $test (@{$node->{"res_test"}}) { $chaine.= sprintf "[%d] ddl=%d", $test->{"level"}, $test->{"ddl"}; if ($test->{"ddl"} > 0) { $chaine.= sprintf " chi2=%.2f p_value_chi2=%.3g", $test->{"chi2"}, $test->{"p_val"}; # TODO : ça arrive quand on a que des malades ou témoins # dans les clades... if (not defined($test->{"chi2"})) { print "chi2 for ", Name($node), "(", $test->{"ddl"}, ")", "\n"; } if (not defined($test->{"p_val"})) { print "p_val for ", Name($node), "(", $test->{"ddl"}, ")", "\n"; } if ($mode ==2) { if (defined($test->{"sign"})) { if ($test->{"sign"} == ALTree::Chi2::NON_SIGNIFICATIF) { $chaine .= " (non significatif)"; } elsif ($test->{"sign"} == ALTree::Chi2::SIGNIFICATIF) { $chaine .= " (significatif)"; } else { ALTree::Utils::internal_error("unknown value ". $test->{"sign"}); } } if (defined($test->{"texte"})) { $chaine .= "\n".$test->{"texte"}; } if (defined($test->{"warning"})) { $chaine .= "\n".$test->{"warning"}; } } } $chaine.="\n"; } } } elsif ($mode == 3 || $mode ==4) { if (defined $node->{"res_test"}) { for $test (@{$node->{"res_test"}}) { $chaine.= sprintf "[%d] nb_fact=%d", $test->{"level"}, $test->{"nb_facteurs"}; if ($test->{"nb_facteurs"} > 1) { $chaine.= sprintf " F=%.2f p_value=%.3g", $test->{"F"}, $test->{"p_val"}; # TODO : ça arrive quand on a que des malades ou témoins # dans les clades... if (not defined($test->{"F"})) { print "F for ", Name($node), "(", $test->{"nb_facteurs"}, ")", "\n"; } if (not defined($test->{"p_val"})) { print "p_val for ", Name($node), "(", $test->{"nb_facteurs"}, ")", "\n"; } if ($mode == 4) { if (defined($test->{"sign"})) { if ($test->{"sign"} == ALTree::Chi2::NON_SIGNIFICATIF) { $chaine .= " (non significatif)"; } elsif ($test->{"sign"} == ALTree::Chi2::SIGNIFICATIF) { $chaine .= " (significatif)"; } else { ALTree::Utils::internal_error("unknown value ". $test->{"sign"}); } } if (defined($test->{"texte"})) { $chaine .= "\n".$test->{"texte"}; } if (defined($test->{"warning"})) { $chaine .= "\n".$test->{"warning"}; } } } $chaine.="\n"; } } } return($chaine); } 1; altree-v1.3.1/ALTree/SitePerForet.pm0000644000175000017500000000701012043315246017337 0ustar vdanjeanvdanjeanpackage ALTree::SitePerForet; ################################################################ ################################################################ ####################### SitePerForet ########################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::Site); use sort '_quicksort'; sub New { # [classe] site_nb my $class=shift; my $self={}; my $site_nb=shift; bless($self, $class); $self->InitSite($site_nb); $self->_init("nb_mut" => 0, @_); return $self; } sub NewSens { my $self=shift; my $sens=shift; return ALTree::SiteSensPerForet->New($sens, $self); } sub mysort { my $func=shift; my @tab=@_; my @tab2=(); if (scalar(@tab) == 0) { return @tab2; } # print "Site ", $tab[0]->GetSiteNb(), "\n"; # foreach my $sens (@tab) { # print $sens->GetVi()," ", $sens->GetSensLabel(), "\n"; # } my $size; while (($size=scalar(@tab)) > 1) { my $min=0; for(my $i=1; $i<$size; $i++) { if ($func->($tab[$i], $tab[$min]) < 0) { $min=$i; } } push @tab2, $tab[$min]; # print "min=$min adding ",$tab[$min]->GetSensLabel(),"\n"; # print "Old tab\n"; # foreach my $sens (@tab) { # print $sens->GetVi()," ", $sens->GetSensLabel(), "\n"; # } #my @tab3=splice(@tab, $min, 1); my @tab3; for (my $i=0; $i<=$#tab; $i++) { if ($i != $min) { push @tab3, $tab[$i]; } } # print "NewTab\n"; # foreach my $sens (@tab3) { # print $sens->GetVi()," ", $sens->GetSensLabel(), "\n"; # } @tab=@tab3; } push @tab2, $tab[0]; # print "Site ", $tab[0]->GetSiteNb(), " result\n"; # foreach my $sens (@tab2) { # print $sens->GetVi()," ", $sens->GetSensLabel(), "\n"; # } return @tab2; } sub functrie { my $a=shift; my $b=shift; #print "a=$a, b=$b\n"; #if (not defined($a)) { #return 0; #print "a=$a b=$b\n"; #die "beauk\n"; #} # my $value=($b->GetVi() <=> $a->GetVi()); # print "Comparing ", $b->GetVi(), " and ", $a->GetVi(), " = $value\n"; # return $value;# return ($b->GetVi() <=> $a->GetVi()); } sub _EnsureViMax { my($self)=shift; if (not exists ($self->{"V_i_max"})) { my @toto=$self->GetSensList(); #print "site: ", $self->GetSiteNb(), "\n"; #for my $ref (@toto) { #print "Ref: $ref\n"; #} my @tab_trie=mysort \&functrie, @toto; #for my $ref (@toto) { #print "Ref: $ref\n"; #} #my @tab3; #for (my $i=0; $i<=$#toto; $i++) { # print "value $i = $toto[$i]\n"; # push @tab3, $toto[$i]; #} #my @tab_trie=sort { # $b->GetVi() <=> $a->GetVi(); #} @tab3; my($Vimax)=$self->{"V_i_max"}=$tab_trie[0]->GetVi(); for (my $i=1; $i<=$#tab_trie; $i++) { if ($tab_trie[$i]->GetVi() != $Vimax) { splice(@tab_trie, $i); # Elimine tout à partir de indice $i last; } } #print "Vi max : ", $Vimax, "\n"; $self->{"V_i_max_tab"}=\@tab_trie; } } sub GetViMax { my $self=shift; $self->_EnsureViMax(); return $self->{"V_i_max"}; } sub GetViMaxSens { my($self)=shift; my($index)=shift; $self->_EnsureViMax(); return $self->{"V_i_max_tab"}->[$index]; } #NbViMaxSens() => nombre sitesensperforet sub NbViMaxSens { my($self)=shift; $self->_EnsureViMax(); return (scalar @{$self->{"V_i_max_tab"}}); } #GetViMaxSensList() => array de tous les sitessensperforet (avec Vi==ViMax) sub GetViMaxSensList { my($self)=shift; $self->_EnsureViMax(); return @{$self->{"V_i_max_tab"}}; # Comment ça marche ce truc? } 1; altree-v1.3.1/ALTree/SiteSensPerForet.pm0000644000175000017500000000161112043315246020171 0ustar vdanjeanvdanjeanpackage ALTree::SiteSensPerForet; ################################################################ ################################################################ ####################### SiteSensPerForet ####################### ################################################################ ################################################################ use base qw(ALTree::Base ALTree::SiteSens); # Structure SiteSensPerForet # "site_struct" -> Site # "sens_label" -> String # "V_i" -> Float sub New { # [classe] sens_label site_struct my $class=shift; my $self={}; my $sens=shift; my $site=shift; bless($self, $class); $self->InitSiteSens($sens, $site); $self->_init("V_i" => 0, @_); return $self; } sub PlusVi { my $self=shift; my $value=shift; $self->{"V_i"} += $value; } sub GetVi { my $self=shift; return $self->{"V_i"}; } 1; altree-v1.3.1/ALTree/Site.pm0000644000175000017500000000354712043315246015703 0ustar vdanjeanvdanjeanpackage ALTree::Site; ################################################################ ################################################################ ####################### Site ########################## ################################################################ ################################################################ use base 'ALTree::Base'; use ALTree::Sens; # Structure Site # "site_nb" -> Integer # "sens_struct" -> Hash of ('sens_label' -> SiteSens) sub InitSite { # [obj] $site my $self=shift; my $site_nb=shift; $self->_init("site_nb" => $site_nb, "sens_struct" => {}); $self->Debug("creating Site $site_nb\n"); } sub GetSiteNb { my $self=shift; return $self->{"site_nb"}; } sub HasSensIndex { my $self=shift; my $sens=shift; return exists($self->{"sens_struct"}->{$sens->GetLabel()}); } sub AddSens { my $self=shift; my $sens=shift; my($ref_site_sens)=$self->NewSens($sens); $self->{"sens_struct"}->{$sens->GetLabel()}=$ref_site_sens; my $sensRev=ALTree::Sens->NewRev($sens); my($ref_site_sens_rev)=$self->NewSens($sensRev); $self->{"sens_struct"}->{$sensRev->GetLabel()}=$ref_site_sens_rev; ALTree::SiteSens::LinkRev($ref_site_sens, $ref_site_sens_rev); } sub GetSens { my $self=shift; my $sens=shift; return $self->{"sens_struct"}->{$sens->GetLabel()}; } sub ProvideSens { my $self=shift; my $sens=shift; if (not $self->HasSensIndex($sens)) { $self->AddSens($sens); } # creation du hash ref_site_sens et d'une ref dessus return $self->GetSens($sens); } sub GetSensIndexList { my $self=shift; return keys(%{$self->{"sens_struct"}}); } sub GetSensList { my $self=shift; return values(%{$self->{"sens_struct"}}); } sub NewSens { my $self=shift; my $sens=shift; die "This method needs to be overwriten\n"; } 1; altree-v1.3.1/ALTree/Nanova.pm0000644000175000017500000000450312043315246016212 0ustar vdanjeanvdanjeanpackage ALTree::Nanova; use strict; BEGIN { use Exporter (); use vars qw($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS); # set the version for version checking #$VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision: 153 $ =~ /\d+/g); sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(); #(&func1 &func2 &func4); %EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(); } use vars @EXPORT_OK; use ALTree::Utils qw(erreur); use Data::Dumper; # This function transforms the tree structure into the matrix used by the library NAnova sub Tree2mat { my $present_node = shift; my @vect=(); # dernier chenin parcouru my @mat; my $height=$present_node->{"height"}; print STDERR "heigh=", $present_node->{"height"}, "\n"; for (my $i=0; $i<$height; $i++) { push(@vect, -1); } my $tree2mat; $tree2mat = sub { my $present_node = shift; if ($present_node->NbChildren()==0) { for (my $i=$present_node->{"level"}; $i<$height; $i++) { $vect[$i]++; } my @tab=@vect; push (@mat, \@tab); } else { for my $child ($present_node->GetChildrenList()) { $vect[$present_node->{"level"}]++; $tree2mat->($child); } } }; $tree2mat->($present_node); return \@mat; } # Fille the various tabular necessary for NAnaova sub FillTableaux { my $present_node = shift; my $values = shift; my $groups = shift; my $nb_term = shift; print "Node: ", $present_node->Name(), " ", Dumper($values); print "\n"; if ($present_node->NbChildren()==0) { print "list: ", Dumper($present_node->GetQuantiList()), "\n"; push @{$values}, @{$present_node->GetQuantiListValues()}; push @{$groups}, $present_node->NbQuanti(); $nb_term++; } else { for my $child ($present_node->GetChildrenList()) { FillTableaux($child, $values, $groups, $nb_term); } } } sub WriteMat { my $mat = shift; #print STDERR Dumper($mat); #return; for (my $i=0; $i<=$#$mat; $i++) { foreach my $elem (@{$mat->[$i]}) { print $elem, "\t"; } print "\n"; } } 1; altree-v1.3.1/ALTree/Tree.pm0000644000175000017500000001130412043315246015664 0ustar vdanjeanvdanjeanpackage ALTree::Tree; ################################################################ ################################################################ ####################### Tree ######################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::SiteCollection); # "nodes" -> Hash of ('id' -> Node) # "sites" -> Hash of ('site_nb' -> SitePerTree) sub New { # [classe] my $class=shift; my $self={}; bless($self, $class); $self->InitSiteCollection(); $self->_init("nodes" => {}, @_); $self->Debug("creating Tree\n"); return $self; } sub AddNode { my $self=shift; my $node=shift; my $id=$node->GetId(); $self->{"nodes"}->{$id}=$node; } sub GetNode { my $self=shift; my $id=shift; if (defined ($self->{"nodes"}->{$id})) { return $self->{"nodes"}->{$id}; } else { return undef; } } sub HasNodeIndex { my $self=shift; my $id=shift; return exists($self->{"nodes"}->{$id}); } sub GetNodesIndexList { my $self=shift; return keys(%{$self->{"nodes"}}); } sub GetNodesList { my $self=shift; return values(%{$self->{"nodes"}}); } #sub _SetOutgroup { # my $self=shift; # my($outgroup)=shift; # $self->{"outgroup"}=$outgroup; #} sub GetOutgroup { my $self=shift; if (not exists($self->{"outgroup"})) { FIND: { foreach my $clef ($self->GetNodesIndexList()) { if ($clef eq "H000") { $self->{"outgroup"}=$self->GetNode($clef); last FIND; } } die "No outgroup corresponding to id=H000 identified in the tree\n"; } } return ($self->{"outgroup"}); } sub SetNbBrNonNulle { my $self=shift; my($value)=shift; $self->{"nb_br_non_nulle"}=$value; } sub GetNbBrNonNulle { my $self=shift; return ($self->{"nb_br_non_nulle"}); } sub _SetRoot { my $self=shift; my(@roots); #print STDERR "nodes: \n"; foreach my $node ($self->GetNodesList()) { if (not $node->HasFather()) { push @roots, $node; #print STDERR "root: ", $node->Name(), "\n"; } #else { print STDERR "node: ", $node->Name(), " father ", $node->GetFather()->Name(), "\n"; } } #Verification that there is only one root if (scalar(@roots) !=1) { die "error in the tree: ", scalar(@roots), " roots for the tree!\n"; } $self->{"root"}=$roots[0]; } sub GetRoot { my $self=shift; if (not exists($self->{"root"})) { $self->_SetRoot(); } return ($self->{"root"}); } sub ChangeRoot { my $self=shift; my $newroot=shift; if ($newroot == $self->GetRoot()) { return; } my $oldfather=$newroot->GetFather(); if (not defined($oldfather)) { die ("Non root node of the tree has no father\n" ."Do you use a node of the correct tree ?"); } $self->ChangeRoot($oldfather); # Some integrity tests... if ($oldfather->NbApo() != 0) { die "Root has apomorphies !"; } if ($oldfather->GetBrLen() != 0) { die "Root has non null BrLen !"; } foreach my $apo ($newroot->GetApoList()) { $oldfather->AddApo($apo->GetSensRev()); } $newroot->DeleteAllApo(); #print "Setting BRLen to ",$newroot->GetBrLen()," for ", $oldfather->Name()," from ", $newroot->Name(),"\n"; $oldfather->SetBrLen($newroot->GetBrLen()); $newroot->SetBrLen(0); $oldfather->SetFather($newroot); $newroot->SetFather(undef); $newroot->AddChild($oldfather); $oldfather->DeleteChild($newroot); $self->{"root"}=$newroot; } # Niveau 0 : noeud le plus profond sans frère ni oncle avec plusieurs fils sub FillLevel { my $self=shift; my $set_level; $set_level=sub { my($present_node)=shift; my($level)=shift; my($child); my($childlevel)=$level; if ($level>0 || $present_node->NbChildren() > 1) { $childlevel++; } my($realchildlevel)=$childlevel; foreach $child (@{$present_node->{"children"}}) { $realchildlevel=$set_level->($child, $childlevel); } $level=$realchildlevel-1; $present_node->{"level"}=$level; if ($level == 0) { $self->{"level0node"}=$present_node; } return $level; }; $set_level->($self->GetRoot(), 0); } sub FillHeight { my $self=shift; my $set_height; $set_height=sub { my($present_node)=shift; my($height)=0; my($child); foreach $child (@{$present_node->{"children"}}) { my $min_height=$set_height->($child)+1; if ($min_height > $height) { $height=$min_height; } } $present_node->{"height"}=$height; }; $set_height->($self->GetRoot()); } sub GetLevel0 { my $self=shift; if (! exists($self->{"level0node"})) { $self->FillLevel(); } return $self->{"level0node"}; } 1; altree-v1.3.1/ALTree/Utils.pm0000644000175000017500000000267312043315246016076 0ustar vdanjeanvdanjeanpackage ALTree::Utils; use Pod::Usage; use strict; BEGIN { use Exporter (); use vars qw($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS); # set the version for version checking #$VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(); #(&func1 &func2 &func4); %EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(&erreur &internal_error); } use vars @EXPORT_OK; sub erreur { my $msg=shift; my $use_pod=shift; if (not defined($use_pod) or $use_pod) { pod2usage("Error: ".$msg); } else { print STDERR "Error: ".$msg; exit 1; } } sub internal_error { my $msg=shift; die("Internal error: $msg\n". "Please, report this bug (with all is needed to reproduce it) to:\n". "Claire.Bardel\@univ-lyon1.fr\n"); } 1; package DataType; use constant SNP => 0; use constant DNA => 1; package PhylProg; use constant PHYLIP => 0; use constant PAUP => 1; use constant PAML => 2; package ANC; use constant Rooted => 0; use constant Unrooted => 1; use constant OutGroup => 2; no strict; @Name=("rooted using an ancestral sequence", "unrooted", "rooted using an outgroup"); altree-v1.3.1/ALTree/SiteCollection.pm0000644000175000017500000000202412043315246017704 0ustar vdanjeanvdanjeanpackage ALTree::SiteCollection; ################################################################ ################################################################ ####################### SiteCollection ######################## ################################################################ ################################################################ use base 'ALTree::Base'; sub InitSiteCollection { my $self=shift; $self->_init("sites" => {}); } sub AddSite { my $self=shift; my $site=shift; my $site_nb; $site_nb=$site->GetSiteNb(); $self->{"sites"}->{$site_nb}=$site; } sub GetSite { my $self=shift; my $site_nb=shift; #my $site=$self->{"sites"}->{$site_nb}; #if (not defined($site)) { #die "The site number $site_nb does not exist"; #} return $self->{"sites"}->{$site_nb}; } sub HasSiteIndex { my $self=shift; my $site_nb=shift; return exists($self->{"sites"}->{$site_nb}); } sub GetSitesList { my $self=shift; return values(%{$self->{"sites"}}); } 1; altree-v1.3.1/ALTree/Base.pm0000644000175000017500000000052612043315246015643 0ustar vdanjeanvdanjeanpackage ALTree::Base; ########################################### ######## MAIN DATA STRUCTURES ######### ########################################### sub _init { my $self=shift; if (@_) { my %extra = @_; @$self{keys %extra} = values %extra; } } sub Debug { my $self=shift; #print STDERR @_; } 1; altree-v1.3.1/ALTree/SiteSens.pm0000644000175000017500000000240712043315246016526 0ustar vdanjeanvdanjeanpackage ALTree::SiteSens; ################################################################ ################################################################ ####################### SiteSens ######################## ################################################################ ################################################################ use base 'ALTree::Base'; # Structure SiteSens # "site_struct" -> Site # "sens" -> Sens # "rev" -> SiteSens sub InitSiteSens { # [Obj] Sens_label SiteSens my $self=shift; my $sens=shift; my $site=shift; $self->_init("sens" => $sens, "site_struct" => $site, @_); $self->Debug("creating SiteSens $sens\n"); } sub GetSensLabel { my $self=shift; return $self->{"sens"}->GetLabel(); } sub GetSensStruct { my $self=shift; return $self->{"sens"}; } sub GetSite { my $self=shift; return $self->{"site_struct"}; } sub GetSiteNb { my $self=shift; return $self->GetSite()->GetSiteNb(); } sub LinkRev { my $siteSens=shift; my $siteSensRev=shift; $siteSens->{'rev'}=$siteSensRev; $siteSensRev->{'rev'}=$siteSens; } sub GetSensRev { my $self=shift; if (not defined($self->{'rev'})) { die "LinkRev not called\n"; } return $self->{'rev'}; } 1; altree-v1.3.1/ALTree/Input.pm0000644000175000017500000005771112043315246016100 0ustar vdanjeanvdanjeanpackage ALTree::Input; use strict; BEGIN { use Exporter (); use vars qw($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS); # set the version for version checking #$VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(); #(&func1 &func2 &func4); %EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(&ReadCorrespond &PrepareTree); } use vars @EXPORT_OK; use ALTree::Utils qw(erreur); use Data::Dumper; ########################################### ######## Read file fonctions ######### ########################################### #Read the file correspond.txt and put haplotype ID, nb case and nb #controle in a hash: $correspondance{$HaploID}->{"case"} and #$correspondance{$HaploID}->{"controle"} sub ReadCorrespondQuali { my($name_correspond) =shift; my($ligne, @tableau); my(%correspondance); open (CORRESP, '<', $name_correspond) or erreur("Unable to read file '$name_correspond': $!\n", 0); while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*$/) { next; } # On peut mettre '#' ou ';' pour introduire une ligne de commentaire my $di="#"; if ($ligne =~ /^\s*[$di;]/) { next; } @tableau=split(/\s+/, $ligne); if ($#tableau != 2) { ALTree::Utils::erreur("I do not find 3 columns in $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n",0); } my $id=shift @tableau; if ($id !~ /^[a-zA-Z0-9]+$/) { ALTree::Utils::erreur("The haplotype name '$id' contains unauthorized". " characters\nin $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n",0); } for(my $i=0; $i<2; $i++) { $_=shift @tableau; my $value=0; my $type; if (/^([a-zA-Z]+)_?([0-9]+)$/) { $type=$1; $value += $2; } else { ALTree::Utils::erreur("I do not understand '$_' in $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n", 0); } $_=$type; if (/^(m(alade(s)?)?)|(case(s)?)$/) { $type="case"; } elsif (/^c(ontrols?)?$/) { $type="control"; } else { ALTree::Utils::erreur("I do not understand '$_' in $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n", 0); } if (defined($correspondance{$id}->{$type})) { ALTree::Utils::erreur("For the second time, I read the number of". " ${type}s of '$id'\nin file '$name_correspond' at". " line $.:\n$ligne\nPlease, check the syntax.\n", 0); } $correspondance{$id}->{$type}=$value; } } #my($clefs); #DEBUG #foreach $clefs (keys %correspondance) { #print "$clefs case: ", $correspondance{$clefs}->{"case"}, "\n"; # print "$clefs, control: ",$correspondance{$clefs}->{"control"}, "\n"; #} return(\%correspondance); } #Read the file correspond.txt and put haplotype ID... (to be continued) sub ReadCorrespondQuanti { my($name_correspond) =shift; my($ligne, @tableau); my($correspondance); open (CORRESP, '<', $name_correspond) or erreur("Unable to read file '$name_correspond': $!\n", 0); my $numhaplo=0; while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*$/) { next; } # On peut mettre '#' ou ';' pour introduire une ligne de commentaire my $di="#"; if ($ligne =~ /^\s*[$di;]/) { next; } @tableau=split(/\s+/, $ligne); $numhaplo++; my $id=shift @tableau; if ($id !~ /^[a-zA-Z0-9]+$/) { ALTree::Utils::erreur("The haplotype name '$id' contains". "unauthorized characters\n". "in $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n",0); } for(my $i=0; $i<=$#tableau; $i++) { $correspondance->{$id}->[$i]->[0]=$tableau[$i]; $correspondance->{$id}->[$i]->[1]=$numhaplo; # $numhaplo sert pour les anova 2 facteurs emboités (2eme facteur) } } #my($clefs); #DEBUG #foreach my $clefs (keys %{$correspondance}) { #for (my $i=0; $i{$clefs}}); $i++) { # print STDERR "$clefs ", $correspondance->{$clefs}->[$i]->[1], "\n"; #} #} return($correspondance); } # return : # Hash of # "filename" => String # "anctype" => ANC::OutGroup|ANC::Rooted|ANC:Unrooted # ["outgroup" => String(leaf name)] # "trees" => # Array (size number of trees) of # Hash of # "index" => Int # "line" => Int # "file" => ref of first hash # "tab_longbranche" => # Array of (son, father, branch length) # # "tab_seq" => # Hash of # son => Array of (father, yes|no|maybe, .....1..0..1..) # # "tab_infoapo" => # Array of (father, son, apo number, CI, nb steps, direction of change) # "nb_br_non_nulle" => # Int # ["has_ambiguity"] => Int # ["ancestor" => String(sequence)] # "tree" => Tree sub ReadInputFile1 { my($input_file)=shift; my($phylo_program)=shift; my($datatype)=shift; my($ancetre)=shift; my($identifiant); my(%file)=("filename" => $input_file); if ($phylo_program == PhylProg::PAUP) { $identifiant="Tree number"; } elsif ($phylo_program == PhylProg::PHYLIP) { $identifiant="requires a total of"; } else { $identifiant = "TREE # "; } my $tab_arbres; if ($phylo_program == PhylProg::PAUP) { $tab_arbres=ReadPAUP(\%file); } elsif ($phylo_program == PhylProg::PHYLIP) { if ($datatype != DataType::SNP) { erreur("Datatype DNA not yet implemented\n", 0); } $tab_arbres=ReadPHYLIP(\%file); } else { $tab_arbres=ReadPAML(\%file); } $file{"trees"}=$tab_arbres; my $index=0; for my $arbre (@{$tab_arbres}) { $arbre->{"index"}=$index++; $arbre->{"file"}=\%file; $arbre->{"tree"}=readTreeOld($phylo_program, $arbre, $datatype, $ancetre); } $file{"nb_trees"}=$index; if ($index == 0) { erreur("No tree in file '$input_file'\nAborting.\n", 0); } return (\%file); } sub setAncType { my $file=shift; my $type=shift; my $value=shift; if (not exists($file->{"anctype"})) { $file->{"anctype"}=$type; if ($type == ANC::OutGroup) { $file->{"outgroup"}=$value; } return; } if ($type != $file->{"anctype"}) { erreur("I found a tree '".$ANC::Name[$type]. "' where as previous were '".$ANC::Name[$file->{"anctype"}]. "'.\nin file '".$file->{"filename"}."'", 0); } if ($type == ANC::OutGroup) { if (defined($file->{"outgroup"}) && defined($value) && $file->{"outgroup"} ne $value) { erreur("I found a tree whose outgroup is '".$value. "' where as previous were '".$file->{"outgroup"}. "'.\nin file '".$file->{"filename"}."'", 0); } elsif ((defined($file->{"outgroup"})) xor defined($value)) { erreur("I found a tree whose outgroup is '". (defined($value)?$value:"unknown"). "' where as previous were '". (defined($file->{"outgroup"})?$file->{"outgroup"}: "unknown"). "'.\nin file '".$file->{"filename"}."'", 0); } } } sub ReadPAUP { my $file=shift; my $filename=$file->{"filename"}; my($ligne); my @trees; open (INPUT, '<', $filename) or erreur("Unable to read file '$filename': $!\n", 0); TREE: { my(@tab_longbranche, @tab_infoapo); my($nb_br_non_nulle)=0; my(%tree); my $anctype; FIND_TREE: { while ($ligne=) { last FIND_TREE if ($ligne =~ /^Tree number /); } # Fin du fichier last TREE; } $tree{"line"}=$.; FIND_LONGBRANCHES: { my $dia="#"; while ($ligne=) { if ($ligne =~ /^Branch lengths and linkages for tree ${dia}[0-9]+ \(unrooted\)/) { setAncType($file, ANC::Unrooted); $anctype++; } last FIND_LONGBRANCHES if ($ligne =~ /^\s+Node\s+to node/); } next TREE; } READ_LONGBRANCHE: { my $pos = index($ligne, "to node"); while ($ligne=) { if ($ligne =~ /-------------------------/) { next; } if ($ligne =~ /^\s*Sum/) { last READ_LONGBRANCHE; } chomp($ligne); if ($ligne =~ /^\s*[0-9]+\s+root\s+0\s+0\s+0\s*$/) { # On ignore la ligne root qui ne contient aucune mutation next; } my $son = substr($ligne,0,$pos-1); # print STDERR "son1:$son\n"; my $other_infos = substr($ligne,$pos); $other_infos =~ s/^\s*//; # print STDERR "otherinfos:$other_infos\n"; if ($son =~ /^\s*([0-9]+)\s*$/) { $son = $1; } elsif ($son =~ /\s*([^\s](.*[^\s])?)\s+\([0-9]*\)(\*)?\s*$/) { $son = $1; if (defined($3)) { setAncType($file, ANC::OutGroup, $son); $anctype++; } } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(bad branch '$son' while reading branch". " lengths)\n", 0); } my @tableau = split(/\s+/, $other_infos); if ($#tableau != 3) { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(bad number of columns while reading branch". " lengths)\n", 0); } # We add (son, father, branch length) push @tab_longbranche, [$tableau[0], $son, $tableau[1]]; if ($tableau[2] != 0) { $nb_br_non_nulle++; } } next TREE; } FIND_APO: { while ($ligne=) { if ($ligne =~ /^\s+Branch\s+Character\s+Steps\s+CI\s+Change/) { last FIND_APO; } } next TREE; } READ_APO: { my $position = index($ligne, "Character"); my $son; my $father; while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*$/) { last READ_APO; } if ($ligne =~ /^\s*------------------/) { next; } my $name_haplo = substr($ligne,0,$position-1); if ($name_haplo =~ /^\s*$/) { if (not defined($son)) { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(no branch while reading". " apomorphies)\n", 0); } } elsif ($name_haplo =~ /^\s*(root|node_[0-9]+) --> (.*[^\s])\s*$/){ $father=$1; $son=$2; $father=~ s/^node_//; $son=~ s/^node_//; } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(bad branch while reading". " apomorphies)\n", 0); } my $infos = substr($ligne,$position); #print STDERR "infos:$infos\n"; my @tab_infos=split(/\s+/, $infos); if ($#tab_infos != 5) { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(bad number of columns while reading". " apomorphies)\n", 0); } my $sens_chgt = join(' ', $tab_infos[3], "-->", $tab_infos[5]); # (father, son, apo number, CI, nb steps, direction of change) push @tab_infoapo, [$father, $son, $tab_infos[0], $tab_infos[2], $tab_infos[1], ALTree::Sens->New($sens_chgt)]; } } $tree{"tab_longbranche"} = \@tab_longbranche; $tree{"tab_infoapo"} = \@tab_infoapo; $tree{"nb_br_non_nulle"} = $nb_br_non_nulle; if (not $anctype) { setAncType($file, ANC::Rooted); } push @trees, \%tree; redo TREE; } continue { erreur("Unexpected end of file while reading a tree\n". "in file '$filename' at line $.\n", 0); } close(INPUT); #print STDERR Dumper(@trees); return \@trees; } sub ReadPHYLIP { my $file=shift; my $filename=$file->{"filename"}; my($ligne); my @trees; open (INPUT, '<', $filename) or erreur("Unable to read file '$filename': $!\n", 0); TREE: { my(@tab_longbranche); my(%tab_seq); my(%tree); FIND_TREE: { FIND_ANCESTOR: { while ($ligne=) { last FIND_TREE if ($ligne =~ /^From\s+To\s+Any\s+Steps/); last FIND_ANCESTOR if ($ligne =~ /^best guesses of ancestral states:/); } # Fin du fichier last TREE; } my $ancestor=""; READ_ANCESTOR: { while ($ligne=) { chomp($ligne); if ($ligne =~ /.*0\!\s+([01?\s]+)$/) { my @tab=split(/\s+/, $1); $ancestor.=join('', @tab); } elsif ($ligne =~ /^[\s]*$/) { last READ_ANCESTOR; } elsif ($ligne =~ /^[0-9\s]*$/) { } elsif ($ligne =~ /^\s*\*-+\s*$/) { } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(while reading ancestor)\n", 0); } } next TREE; } $tree{"ancestor"}=$ancestor; setAncType($file, ANC::OutGroup, undef); #print STDERR "ancestor=$ancestor\n"; while ($ligne=) { last FIND_TREE if ($ligne =~ /^From\s+To\s+Any\s+Steps/); } next TREE; } $tree{"line"}=$.; READ_LONGBRANCHE: { while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*root\s+[0-9]+\s+no\s+[. ]+\s*$/) { # On ignore la ligne root qui ne contient aucune mutation next; } elsif ($ligne =~ /^\s*([0-9a-zA-Z_]+)\s+([0-9a-zA-Z_]+)\s+(yes|no|maybe)\s+([01.? ]+)\s*$/) { #print STDERR "trouvé! $ligne\n"; my($father)=$1; my($son)=$2; my($step2)=$3; my $seq=join('', split(/\s+/, $4)); my $step=$seq; $step =~ s/\.//g; $step=length($step); push @tab_longbranche, [$father, $son, $step]; if (defined($tab_seq{$son})) { erreur("It is the second time I read an information". "for the branch leading to '$son':\n$ligne\n". "in file '$filename' at line $.\n". "Please, check your data.\n", 0); } $tab_seq{$son}=[$father, $step2, $seq]; } else { if (scalar(@tab_longbranche)==0) { next; } elsif ($ligne =~ /^\s*$/) { last READ_LONGBRANCHE; } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(while reading branches)\n", 0); } } } if (scalar(@tab_longbranche)==0) { next TREE; } } $tree{"tab_longbranche"} = \@tab_longbranche; $tree{"tab_seq"} = \%tab_seq; if (not exists($tree{"ancestor"})) { setAncType($file, ANC::Rooted); } push @trees, \%tree; redo TREE; } continue { erreur("Unexpected end of file while reading a tree\n". "in file '$filename' at line $.\n", 0); } close(INPUT); #print STDERR Dumper(@trees); return \@trees; } sub ReadPAML { my $file=shift; my $filename=$file->{"filename"}; my($ligne); my @trees; open (INPUT, '<', $filename) or erreur("Unable to open read '$filename': $!\n", 0); TREE: { my(@tab_longbranche, @tab_infoapo); my($nb_br_non_nulle)=0; my(%tree); FIND_TREE: { while ($ligne=) { last FIND_TREE if ($ligne =~ /^\s*Summary of changes along branches/); } # Fin du fichier last TREE; } $tree{"line"}=$.; READ_LONGBRANCHE: { READ_BRANCH: while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*List of extant and reconstructed sequences/) { last READ_LONGBRANCHE; } if ($ligne =~ /^\s*$/) { next; } if ($ligne =~ /^Check root for directions of change./) { next; } if (($ligne =~ /\s*Branch [0-9]+:\s+([0-9]+)\.\.([0-9]+)\s*$/) || ($ligne =~ /\s*Branch [0-9]+:\s+([0-9]+)\.\.[0-9]+\s+[(](.*)[)]\s*$/)) { my $father=$1; my $son=$2; my $br_len=0; READ_APO: { while ($ligne=) { if ($ligne =~ /^\s*$/) { next; } if ($ligne =~ /\s*([0-9]+)\s+([0-9A-Za-z?_-])\s+[0-9.]+\s*->\s*([0-9A-Za-z?_-])\s*([0-9\.]*)?\s*/) { # A VERIFIER: NORMALEMENT NE DOIT SE PRODUIRE QU'EN BOUT DE BRANCHES! if ($3 eq "?") { next; } #father #son # apomorphie number # CI # nb steps =1 for SNPs # direction of the change $br_len++; push @tab_infoapo, [$father, $son, $1, undef, 1, ALTree::Sens ->New($2."->".$3)]; } else { last READ_APO; } } next TREE; } # We add (son, father, branch length) push @tab_longbranche, [$father, $son, $br_len]; if ($br_len != 0) { $nb_br_non_nulle++; } # On boucle : on a déjà trouvé une autre ligne redo READ_BRANCH; } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n", 0); } } next TREE; } $tree{"tab_longbranche"} = \@tab_longbranche; $tree{"tab_infoapo"} = \@tab_infoapo; $tree{"nb_br_non_nulle"} = $nb_br_non_nulle; setAncType($file, ANC::Unrooted); push @trees, \%tree; redo TREE; } continue { erreur("Unexpected end of file while reading a tree\n". "in file '$filename' at line $.\n", 0); } close(INPUT); #print STDERR Dumper(@trees); return \@trees; } sub PrepareTree { my $phylo_program=shift; my $input_file=shift; my $datatype=shift; my $ancetre=shift; my $number_arbre=shift; return $input_file->{"trees"}->[$number_arbre]; } #use Data::Dumper; sub readTreeOld { my $phylo_program=shift; my $tab_arbre=shift; my $datatype=shift; my $ancetre=shift; my $tree; my $tab_longbranche=$tab_arbre->{"tab_longbranche"}; $tree=TreeBuilding($tab_longbranche); #print STDERR Dumper($tab_arbre); #print STDERR Dumper($tree); if ($phylo_program == PhylProg::PHYLIP) { my $racine=$tree->GetRoot(); my $ancetre_seq; if (not defined($tab_arbre->{"ancestor"})) { if ($ancetre) { $ancetre_seq=$ancetre; } else { erreur ("You have forgotten the option --anc-seq!\n", 0); } } else { $ancetre_seq=$tab_arbre->{"ancestor"}; if ($ancetre && $ancetre ne $ancetre_seq) { print STDERR "ancestor defined twice, the sequence entered". " with the -anc-seq option will be ignored for the". " tree number ".($tab_arbre->{"index"}+1)."\n"; } } BuildInfoApoPhylip($tab_arbre, $ancetre_seq, $racine); }elsif ($phylo_program == PhylProg::PAUP || $phylo_program == PhylProg::PAML) { } else { ALTree::Utils::internal_error("Phylogeny program not supported"); } my $tab_infoapo=$tab_arbre->{"tab_infoapo"}; FillTreeApoInfo($tree, $tab_infoapo); if (not defined($tab_arbre->{"has_ambiguity"})) { # CheckApoBrlen($tree); Pb avec phylip.. my $nb_br_non_nulle=$tab_arbre->{"nb_br_non_nulle"}; $tree->SetNbBrNonNulle($nb_br_non_nulle); CheckApoBrlen($tree); } return $tree; } ########################################### ######### BUILDING OF THE TREE ########## ########################################### # Build the tree and add the branch length info sub TreeBuilding{ my($tab_longbranche)=shift; my($i); my($tree)=ALTree::Tree->New(); #print "TreeBuilding\n"; for ($i=0;$i<=$#$tab_longbranche;$i++) { my($pere_id, $fils_id, $long_br); # variables intermédiaires pour # lisibilite du prog $pere_id=$tab_longbranche->[$i]->[0]; $fils_id=$tab_longbranche->[$i]->[1]; $long_br=$tab_longbranche->[$i]->[2]; my $pere; my $fils; if (not $tree->HasNodeIndex($fils_id)) { $fils=ALTree::Node->New($fils_id); #creation de la structure Node $tree->AddNode($fils); # puis, on la met dans tree } else { $fils=$tree->GetNode($fils_id); } if (not $tree->HasNodeIndex($pere_id)) { $pere=ALTree::Node->New($pere_id); #creation de la structure Node $tree->AddNode($pere); # puis, on la met dans tree } else { $pere=$tree->GetNode($pere_id); } $pere->AddChild($fils); # print "arbre{pere}->{children}->[0]->{id} ", $arbre->{$pere}->{"children"}->[0]->{"id"}, "\n"; if ($fils->HasFather()) { die ($fils->Name()." already have a father: ".$fils->GetFather()->Name(). " and I would like ".$pere->Name()." as father\n"); } else { $fils->SetFather($pere); } if ($fils->HasBrLen()) { die($fils->Name()." already have a branch length: ".$fils->GetBrLen()."\n"); } else { $fils->SetBrLen($long_br); } } return($tree); } sub FillTreeApoInfo { my($tree)=shift; my($tab_infoapo)=shift; my($i); #print "FillTreeApoInfo\n"; for ($i=0;$i<=$#$tab_infoapo;$i++) { my($pere_id, $fils_id, $apo_num, $apo_CI, $apo_steps, $apo_sens) = @{$tab_infoapo->[$i]}; #print "branche pere($pere) -> fils($fils)\n"; if (not $tree->HasNodeIndex($pere_id) or not $tree->HasNodeIndex($fils_id)) { my $id; if (not $tree->HasNodeIndex($pere_id)) { $id=$pere_id; } else { $id=$fils_id; } erreur("For the apomorphy $apo_num ('$pere_id' -> '$fils_id'),". " the node name\n'$id' has not been found in the tree\n". "Please, check your data.", 0); } my $pere=$tree->GetNode($pere_id); #print $pere->Name(); my $fils=$tree->GetNode($fils_id); #print STDERR "fils = $fils_id, pere=$pere_id\n"; if ($fils->GetFather() != $pere) { erreur("I read the apomorphy $apo_num ('$pere_id' -> '$fils_id').\n". "However, the node '$fils_id' has '". $fils->GetFather()->Name()."' as father in the tree.\n". "Please, check your data.", 0); } my $site; if (not $tree->HasSiteIndex($apo_num)) { $site=ALTree::SitePerTree->New($apo_num); $tree->AddSite($site); # CI is not used any more #if (defined $apo_CI) { # For PAML trees, CI is not defined # $site->SetCI($apo_CI); #} } else { $site=$tree->GetSite($apo_num); } my($ref_site_sens)=$site->ProvideSens($apo_sens); $ref_site_sens->SetStep($apo_steps); # For PAML, $aposteps=1 $fils->AddApo($ref_site_sens); # lie arbre et hash_site_sens } } sub BuildInfoApoPhylip { my($tab_arbre)=shift; my($ancetre_seq)=shift; my($racine)=shift; my @tab_infoapo; my $nb_br_non_nulle=0; my $has_ambiguity=0; my($tab_seq)=$tab_arbre->{"tab_seq"}; my $set_seq; my $root=$racine->GetId(); $set_seq=sub { my $son=shift; my $branch=$tab_seq->{$son}; if (scalar(@{$branch})==4) { return; } my $father=$branch->[0]; my $fatherseq; if (not defined($tab_seq->{$father})) { if ($father ne $root) { erreur("The node '$son' seems to be a son of '". $father."'\nbut I cannot get info about this branch ". "in the tree number ".($tab_arbre->{"index"}+1). "\nthat begins at line ".$tab_arbre->{"line"}. " in file '".$tab_arbre->{"file"}->{"filename"}. "'\nPlease, check your data.\n", 0); } $fatherseq=$ancetre_seq; } else { if (scalar(@{$tab_seq->{$father}}) == 3) { $set_seq->($father); } $fatherseq=$tab_seq->{$father}->[3]; } my $childseq=$branch->[2]; my $longueur=length($childseq); if (length($fatherseq) != $longueur) { erreur("Reconstructed sequences have not the same length". " at node '".$father."'\n($fatherseq) and at node '". $son."' ($childseq)\n", 0); } my($br_len)=0; my($newchildseq)=""; for (my $i=0; $i<$longueur;$i++) { my($fathersite)= substr($fatherseq,$i,1); my($childsite)= substr($childseq, $i,1); if ($childsite eq ".") { $childsite=$fathersite; } elsif ($fathersite ne $childsite) { if ($fathersite eq '?' || $childsite eq '?') { $has_ambiguity++; } $br_len++; my($apo_num)=$i+1; my($apo_sens)=ALTree::Sens->New($fathersite."->".$childsite); push @tab_infoapo, [$father, $son, $apo_num, undef, # Pas de CI dans les données avec PHYLIP 1, # Pas de gestion des micro sat. $apo_sens]; } $newchildseq.=$childsite; } if ($br_len != 0) { $nb_br_non_nulle++; } push @{$branch}, $newchildseq; }; for my $son (keys %{$tab_seq}) { $set_seq->($son); } $tab_arbre->{"tab_infoapo"}=\@tab_infoapo; $tab_arbre->{"nb_br_non_nulle"}=$nb_br_non_nulle; if ($has_ambiguity) { $tab_arbre->{"has_ambiguity"}=$has_ambiguity; } #delete($tab_arbre->{"tab_seq"}); } sub CheckApoBrlen { my($tree)=shift; my($node); $tree->GetRoot()->SetBrLen(0); # to prevent "uninitialized value" foreach $node ($tree->GetNodesList()) { if ($node->GetBrLen() != $node->NbApoStep()) { # check if nb_apo correspond to br_len die "Error in the tree: branch length= ", $node->GetBrLen(), " but ", $node->NbApoStep(), " apomorphies are defined for node ", $node->Name(), "\n"; } } } 1; altree-v1.3.1/ALTree/Node.pm0000644000175000017500000001351512043315246015660 0ustar vdanjeanvdanjeanpackage ALTree::Node; ################################################################ ################################################################ ####################### Node ########################## ################################################################ ################################################################ use base 'ALTree::Base'; # Structure Node # "id" -> String # "children" -> Array of (Node) # "father" -> Node # "apo" -> Hash of ('num_apo' => SiteSens) # "br_len" -> Integer # "case" -> Integer # "control" -> Integer # "level" -> Integer # "height" -> Integer # "sequence" -> string # used only with phylip # "oldfather" -> Node # après fusion des branches nulles (anciennes relations) # "oldchildren" -> Array of (Node) # après fusion des branches nulles (anciennes relations de parenté) # "label" -> string # nom noeuds apres fusion 3+(4) par exemple # "res_test" -> Array of (TestResults) #Creation d'une structure sub New { # [classe] id my $class=shift; my $self={}; my $id=shift; bless($self, $class); $self->_init("id" => $id, "apo" => {}, "children" => [], @_); $self->Debug("creating Node $id\n"); return $self; } sub GetId { my $self=shift; return $self->{"id"}; } sub SetFather { my $self=shift; my $father=shift; $self->{"father"}=$father; } sub GetFather { my $self=shift; return $self->{"father"}; } sub HasFather { my $self=shift; return defined($self->{"father"}); } sub Father { my $self=shift; my $newfather=shift; if (defined($newfather)) { $self->SetFather($newfather); } return $self->GetFather(); } sub RecordOrigFather { my $self=shift; my $father=shift; if ($self->HasFather()) { $self->{"orig_father"}=$self->GetFather(); } } sub GetOrigFather { my $self=shift; if (exists($self->{"orig_father"})) { return $self->{"orig_father"}; } else { return $self->GetFather(); } } sub SetCase { my $self=shift; my $value=shift; $self->{"case"}=$value; } sub GetCase { my $self=shift; return $self->{"case"}; } sub EraseCase { my $self=shift; delete($self->{"case"}); } sub SetControl { my $self=shift; my $value=shift; $self->{"control"}=$value; } sub GetControl { my $self=shift; return $self->{"control"}; } sub EraseControl { my $self=shift; delete($self->{"control"}); } sub EraseQuanti { my $self=shift; delete($self->{"quanti"}); } sub SetBrLen { my $self=shift; my $br_len=shift; $self->{"br_len"}=$br_len; } sub GetBrLen { my $self=shift; return $self->{"br_len"}; } sub HasBrLen { my $self=shift; return exists($self->{"br_len"}); } sub AddOldChild { my $self=shift; push @{$self->{"oldchildren"}}, @_; } sub GetOldChildrenList { my $self=shift; return @{$self->{"oldchildren"}}; } sub AddChild { my $self=shift; push @{$self->{"children"}}, @_; } sub GetChildrenList { my $self=shift; return @{$self->{"children"}}; } sub DeleteChild { my $self=shift; my $todelete=shift; my @newchidren=grep {$_ != $todelete} $self->GetChildrenList(); $self->{"children"}=\@newchidren; return; # my $children=$self->{"children"}; # my($i); # for ($i=0; $i<=$#$children; $i++) { # if ($children->[$i]==$todelete) { # splice(@{$children}, $i, 1); # return; # } # } } sub NbChildren { my $self=shift; return scalar(@{$self->{"children"}}); } sub GetChild { my $self=shift; my $index=shift; return $self->{"children"}->[$index]; } sub ForgetChildren { my $self=shift; $self->{"children"}=[]; } sub SetSequence { my($self)=shift; my($sequence)=shift; $self->{"sequence"}=$sequence; } sub GetSequence { my($self)=shift; return $self->{"sequence"}; } sub AddApo { my $self=shift; my $site_sens=shift; my $apo=$site_sens->GetSiteNb(); if (exists($self->{"apo"}->{$apo})) { die "Adding aleardy present apo $apo in ", $self->Name(),"\n"; } $self->Debug("Adding apo $apo in ", $self->Name(),"\n"); $self->{"apo"}->{$apo}=$site_sens; $site_sens->_AddNode($self); } sub NbApo { my $self=shift; return scalar (keys(%{$self->{"apo"}})); } sub GetApoIndexList { my $self=shift; return keys(%{$self->{"apo"}}); } sub GetApoList { my $self=shift; return values(%{$self->{"apo"}}); } sub GetApo { my $self=shift; my $apo=shift; return $self->{"apo"}->{$apo}; } sub DeleteAllApo { my $self=shift; foreach my $apo ($self->GetApoList()) { $apo->_DeleteNode($self); } $self->{"apo"}={}; } ##Modifie Claire sub NbApoStep { my $self=shift; my($compteur)=0; my($apo); foreach $apo ($self->GetApoList()) { $compteur+=$apo->GetStep(); } return $compteur; } sub Name { my $self=shift; if (defined ($self->{"label"})) { return $self->{"label"}; } else { return $self->GetId(); } } sub AddQuanti { my $self=shift; my $value=shift; my $num_haplo=shift; delete($self->{"moyenne"}); push @{$self->{"quanti"}}, [$value, $num_haplo]; } sub GetQuantiList { my $self=shift; return $self->{"quanti"}; } sub GetQuantiListValues { my $self=shift; my @t=map {$_->[0] } @{$self->{"quanti"}}; return \@t; } sub NbQuanti { my $self=shift; return scalar(@{$self->{"quanti"}}); } sub GetQuantiMean { my $self=shift; if (defined($self->{"moyenne"})) { return $self->{"moyenne"}; } my $tab = $self->GetQuantiListValues(); my $sum; my $i; for ($i=0; $i < scalar (@{$tab}) ; $i++) { $sum+=$tab->[$i]; } my $moy=$sum/($i); $self->{"moyenne"}=$moy; return $moy; } #Faire meme chose pour case, control et br_len (HasBrLen), level, high, sequence, label, oldfather #Faire oldchildren (GetOldChildren, SetOldChildren, ) 1; altree-v1.3.1/ALTree/SiteSensPerTree.pm0000644000175000017500000000533512043315246020020 0ustar vdanjeanvdanjeanpackage ALTree::SiteSensPerTree; ################################################################ ################################################################ ####################### SiteSensPerTree ######################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::SiteSens); # Structure SiteSens # "site_struct" -> Site # "sens_label" -> String # "node_list" -> Array of (Node) # "m_it" -> Interger # nb mutation of this chage in the tree # "R_it" -> Interger # nb co-mutations of this change with character S # "V_it" -> Integer # (R_it-E_it)/sqrt(E_it) sub New { # [classe] sens_label site_struct my $class=shift; my $self={}; my $sens=shift; my $site=shift; bless($self, $class); $self->InitSiteSens($sens, $site); $self->_init("node_list" => [], "R_it" => 0, @_); return $self; } # Appelé par Node->AddApo sub _AddNode { my $self=shift; my $node=shift; if (exists($self->{"m_it"})) { die "_AddNode called after GetMit"; } push @{$self->{"node_list"}}, $node; } # Appelé par Node->DeleteAllApo sub _DeleteNode { my $self=shift; my $node=shift; my @new_node_list=grep { $_ != $node } @{$self->{"node_list"}}; if (scalar(@new_node_list)+1 != $self->NbNodes()) { die "Error while removing a node from a SiteSensPerTree"; } $self->{"node_list"}=\@new_node_list; } sub NbNodes { my $self=shift; return scalar (@{$self->{"node_list"}}); } sub GetNode { my $self=shift; my $index=shift; return $self->{"node_list"}->[$index]; } sub GetNodesList { my $self=shift; return @{$self->{"node_list"}}; } sub SetStep { my $self=shift; my $step=shift; $self->{"Step"}=$step; } sub GetStep { my $self=shift; my $step=shift; return $self->{"Step"}; } sub GetMit { my($self)=shift; if (not exists($self->{"m_it"})) { $self->{"m_it"}=$self->NbNodes(); } return ($self->{"m_it"}); } sub IncRit { my($self)=shift; if (exists($self->{"V_it"})) { die "IncRit called after GetVit"; } $self->{"R_it"}++; } sub GetRit { my($self)=shift; return ($self->{"R_it"}); } sub GetVit { my $self=shift; my $Rit=$self->GetRit(); my $Eit=$self->GetEit(); if (not exists($self->{"V_it"})) { if ($Eit == 0) { $self->{"V_it"}=0; } else { $self->{"V_it"}=($Rit-$Eit)/sqrt($Eit); } } return ($self->{"V_it"}); } sub SetEit { my($self)=shift; my($value)=shift; if (exists($self->{"V_it"})) { die "SetEit called after GetVit"; } $self->{"E_it"}=$value; } sub GetEit { my($self)=shift; return ($self->{"E_it"}); } 1; altree-v1.3.1/README0000644000175000017500000000264112043315246014177 0ustar vdanjeanvdanjeanALTree version 0.92 =================== The README is used to introduce the module and provide instructions on how to install the module, any machine dependencies it may have (for example C compilers and installed libraries) and any other information that should be provided before the module is installed. A README file is required for CPAN modules since CPAN extracts the README file from a module distribution so that people browsing the archive can use it get an idea of the modules uses. It is usually a good idea to provide version information here so that people can decide whether fixes for the module are worth downloading. INSTALLATION To install this module type the following: perl Makefile.PL make make test make install If you prefer to install it in your home directory, then type the following: perl Makefile.PL PREFIX=~ make make test make install In this case, do not forget to add ~/bin in your PATH and ~/lib/perl/"perl_version"/ in PERL5LIB if they are not already present. DEPENDENCIES This module requires these other modules and libraries: blah blah blah COPYRIGHT AND LICENCE Put the correct copyright and licence information here. Copyright (C) 2005 by Claire Bardel This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.4 or, at your option, any later version of Perl 5 you may have available. altree-v1.3.1/Changes0000644000175000017500000001324512045223045014611 0ustar vdanjeanvdanjeanRevision history for Altree Perl program Version v1.3.0 ============== Vincent Danjean (37): Merge RepeatAssociationQuali and RepeatAssociationQuanti Merge CleanCaseControl, CleanChi2 and CleanQuanti into CleanStats Add gitignore for build files Compute tree representation for efficient stat computation Fix depth computation Refactor code Cleanup C headers Cleanup headers Cleanup name in XS functions ClassicalChi2 as a C function with validation checks Remove perl version of ClassicalChi2 Cleanup and comments in CUtils, add debugging facilities move ALTree/Chi2.pm function into CUtils Rewrite CalculChi2 in C Rewrite Chi2 resampling in C Use Chi2 resampling accelerator... Run altree in tree for an example cleanup Manifest Fix "Use Chi2 resampling accelerator..." memory managed outside inner functions Parallel execution of Chi2 resampling Fix some compilation warnings and protect debugging code Do not compile with debug code by default Fix link so that all functions are found, even if TamuAnova is not loaded Get the R code source of the hypergeometric distribution Add missing MT-aware random functions Use internal mt19937ar_t per thread structure Use the hypergeometric distribution If ALTREE_PARALLEL is set to -1, all available CPU are used Increase compiler warning level Optimize rhyper.c for our use case Remove dependencies on PDL and PDL::GSL::CDF Cleanup version handling Update make-release for git Fix typo in function name Fix linkage for CUtils Bump version, new release Version v1.2.1 ============== Vincent Danjean (5): Update external perl modules Bump version Move to_rewrite.pm into ALTree namespace Update MANIFEST Ignore generated files in SVN Version v1.2 ============== Vincent Danjean (2): pour release 1.2 Pour release avec fix bug Version v1.1.1 ============== Vincent Danjean (3): changement adresse e-mail MacOSX does not handle files with different case For example, altree and ALTree can not be both existing Now, altree is moved into progs/ Version v1.1.0 ============== Claire Bardel (6): ajout de la fonctionalité: éliminer les haplotypes présents en moins de xxx examplaires commit avant la release de la 1.1.0 re-commit pré-release la dernière? la vraie dernière? correction meta-données (email, license) Vincent Danjean (32): check for .tar.gz before trying to create it Stop with an error when input file contains no tree prolongation -> no-prologation, à vérifier... ajout de FillQuanti (pas finie) et modif de ReadCorrespondQuanti doc verification que j'ai bien commité tout debuggage avec Vince bug tableaux fin de FillQuanti, ça marche modif de la doc pour rapporteurs parcoursQuanti et CalculAnova modifiées mais pas finies (non testées) pb avec l'appel de tamuanova bash completion correction bash_completion modif dans la lecture de l'arbre suite adaptation en quanti: affichage marche, pas la permutation Youhou! Ca tourne en quanto anova 1 facteur Qualitatif: correction bugs, déplacement de code et suite du développement ajout du quantitatif pour phase/paup dans altree-convert ajout quanti dans altree-add-S récupération de la distrib de pmin un reste de cvs Ajout de la possibilité de traiter plusieurs fichiers conjointement ajout de nanova.pm Correction de FillHeight Calcul de la matrice d'un arbre correction de bug de la localisation du fait de la modif 9 fichiers correction bug sur all_file foret, calcul des Vi pour tous fichiers Version v1.0.1 ============== Vincent Danjean (9): make-release to create a release Correct make-release for META.yml Check for already existing version earlier modification du numero de version dans le MAKEFILE.PL Version v1.0.0 ============== Vincent Danjean (77): résolution du pb des _ dans les noms, plus de flexibilité dans les noms On garde root selection des arbres selection des arbres (correction bugs) paup exemples phylip/paml exemples bug mineur debut reorg run_altree lecture refaite restructuration Input no CI altree un peu mieux option output-file options correction version paup ignore le root supplémentaire inutile (comme phylip) Deletetion of old Documentation/example_files/ Version 1.0.0 Release 1.0.0 Version v0.9.2 ============== Vincent Danjean (34): Amélioration README Alphy tourne en localisation Renommage chi2.pm en Alphy::Chi2.pm change warn for warning orrection du chemin e la bib cutils lgne 1880 modification in alphy-add-S Addition of example files for case control data prog avec pb ligne 570 plein de modifs partout pour adapter à phylip modifs dans alphy-add-S: il prend les nb cas/controle dans correspond.txt maintenant modifs dans alphy-add-S: opt-s est devenu opt-e doc version fix tests version man alphy-add-S début de man pour alphy-add-S et alphy-convert file to ignore modif du manuel version 0d Switching Alphy to ALTree Version v0.01 ============== Vincent Danjean (8): original version; created by h2xs 1.23 with options -AX -n Alphy::Utils initial import ajout du .bib cvs2svn (1): New repository initialized by cvs2svn. altree-v1.3.1/MYMETA.json0000644000175000017500000000155212252703404015205 0ustar vdanjeanvdanjean{ "abstract" : "Association and Localisation tests using phylogenetic Trees", "author" : [ "Claire Bardel " ], "dynamic_config" : 0, "generated_by" : "ExtUtils::MakeMaker version 6.66, CPAN::Meta::Converter version 2.120921", "license" : [ "perl_5" ], "meta-spec" : { "url" : "http://search.cpan.org/perldoc?CPAN::Meta::Spec", "version" : "2" }, "name" : "altree", "no_index" : { "directory" : [ "t", "inc" ] }, "prereqs" : { "build" : { "requires" : { "ExtUtils::MakeMaker" : "0" } }, "configure" : { "requires" : { "ExtUtils::MakeMaker" : "0" } }, "runtime" : { "requires" : {} } }, "release_status" : "stable", "version" : "v1.3.1" } altree-v1.3.1/t/0000755000175000017500000000000012252703410013553 5ustar vdanjeanvdanjeanaltree-v1.3.1/t/ALTree.t0000644000175000017500000000072612043315246015065 0ustar vdanjeanvdanjean# Before `make install' is performed this script should be runnable with # `make test'. After `make install' it should work as `perl ALTree.t' ######################### # change 'tests => 1' to 'tests => last_test_to_print'; use Test::More tests => 1; BEGIN { use_ok('ALTree::Import') }; ######################### # Insert your test code below, the Test::More module is use()ed here so read # its man page ( perldoc Test::More ) for help writing this test script. altree-v1.3.1/META.yml0000644000175000017500000000100212252703410014552 0ustar vdanjeanvdanjean--- abstract: 'Association and Localisation tests using phylogenetic Trees' author: - 'Claire Bardel ' build_requires: ExtUtils::MakeMaker: 0 configure_requires: ExtUtils::MakeMaker: 0 dynamic_config: 1 generated_by: 'ExtUtils::MakeMaker version 6.66, CPAN::Meta::Converter version 2.120921' license: perl meta-spec: url: http://module-build.sourceforge.net/META-spec-v1.4.html version: 1.4 name: altree no_index: directory: - t - inc requires: {} version: v1.3.1 altree-v1.3.1/test/0000755000175000017500000000000012252703410014267 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/create_file/0000755000175000017500000000000012252703410016531 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/create_file/phy-paml_file/0000755000175000017500000000000012252703410021257 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/create_file/phy-paml_file/create_file0000755000175000017500000000041212043315246023450 0ustar vdanjeanvdanjean#!/bin/sh -x # To run Famhap: ~/FAMHAP/FAMHAP15/famhap15 fam19_0 trio.fmh dp P # To obtain phylip/paml input files using altree-convert ../../../altree-convert -i trio.fmh \ -j fam19_0_H1_HAPLOTYPES -p phylip -r famhap -t NUM \ -c nb_cas_control.txt -o trio.phy altree-v1.3.1/test/create_file/phy-paml_file/trio.fmh0000644000175000017500000001073412043315246022741 0ustar vdanjeanvdanjeanFile fam19_0 passed to main function. command: /home/cbardel/FAMHAP/FAMHAP15/famhap15 fam19_0 trio.fmh dp P Input seems to have no column headings. Program proceeds. Infile has 26 columns. It is assumed to have 10 marker(s). 300 individuals were read. 100 families were read. Mendel Check successful. No distortions encountered. The following loci were selected: 1 2 3 4 5 6 7 8 9 10 Only families fully genotyped at these loci will be included into the frequency estimation. independent case chromosomes: 200 control chromosomes: 200 Internal Recoding. CODING MARKER 1. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 2. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 3. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 4. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 5. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 6. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 7. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 8. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 9. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 10. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 HAPLOTYPE ESTIMATION WITH DOUBLED PARAMETER SET: Selected loci: 1 2 3 4 5 6 7 8 9 10 Number of alleles at the loci: 2 2 2 2 2 2 2 2 2 2 Haplotype parameters at beginning (not doubled): 1024 Loglikelihood -1105.715154 9 iterations were performed. 1 1 1 1 1 2 2 2 2 1 HaploiD: 30 FreqAff 0.045000 FreqUnaff 0.015000 1 1 1 1 2 1 1 1 1 1 HaploiD: 32 FreqAff 0.000000 FreqUnaff 0.040000 1 1 1 1 2 1 2 2 2 1 HaploiD: 46 FreqAff 0.005000 FreqUnaff 0.025000 1 1 1 1 2 2 1 1 1 2 HaploiD: 49 FreqAff 0.005000 FreqUnaff 0.010000 1 1 1 1 2 2 2 1 2 1 HaploiD: 58 FreqAff 0.025000 FreqUnaff 0.050000 1 1 1 1 2 2 2 2 2 1 HaploiD: 62 FreqAff 0.005000 FreqUnaff 0.010000 1 1 2 1 1 1 1 1 1 1 HaploiD: 128 FreqAff 0.010000 FreqUnaff 0.000000 1 1 2 1 2 1 1 1 1 1 HaploiD: 160 FreqAff 0.011593 FreqUnaff 0.040833 1 1 2 1 2 1 1 1 1 2 HaploiD: 161 FreqAff 0.005373 FreqUnaff 0.014119 1 1 2 1 2 1 2 2 2 1 HaploiD: 174 FreqAff 0.128034 FreqUnaff 0.180048 1 1 2 1 2 1 2 2 2 2 HaploiD: 175 FreqAff 0.005000 FreqUnaff 0.000000 1 1 2 2 2 1 1 1 1 1 HaploiD: 224 FreqAff 0.010000 FreqUnaff 0.010000 1 1 2 2 2 1 2 2 1 1 HaploiD: 236 FreqAff 0.005000 FreqUnaff 0.005000 1 2 2 2 2 1 1 1 1 1 HaploiD: 480 FreqAff 0.126493 FreqUnaff 0.191914 1 2 2 2 2 1 1 1 1 2 HaploiD: 481 FreqAff 0.025000 FreqUnaff 0.045881 1 2 2 2 2 1 1 1 2 1 HaploiD: 482 FreqAff 0.010000 FreqUnaff 0.030000 1 2 2 2 2 1 1 2 1 1 HaploiD: 484 FreqAff 0.020000 FreqUnaff 0.000000 1 2 2 2 2 1 2 2 2 1 HaploiD: 494 FreqAff 0.108507 FreqUnaff 0.097205 2 1 1 1 1 2 2 1 2 1 HaploiD: 538 FreqAff 0.055000 FreqUnaff 0.010000 2 1 1 1 2 1 1 1 1 1 HaploiD: 544 FreqAff 0.010000 FreqUnaff 0.015000 2 1 1 1 2 1 2 2 2 1 HaploiD: 558 FreqAff 0.005000 FreqUnaff 0.000000 2 1 2 1 1 2 1 2 2 1 HaploiD: 662 FreqAff 0.000000 FreqUnaff 0.005000 2 1 2 1 1 2 2 2 2 1 HaploiD: 670 FreqAff 0.010000 FreqUnaff 0.010000 2 1 2 1 2 1 1 1 1 2 HaploiD: 673 FreqAff 0.000000 FreqUnaff 0.005000 2 1 2 2 1 1 1 1 1 2 HaploiD: 705 FreqAff 0.045000 FreqUnaff 0.005000 2 1 2 2 1 1 2 2 2 1 HaploiD: 718 FreqAff 0.055000 FreqUnaff 0.010000 2 1 2 2 1 2 1 1 1 1 HaploiD: 720 FreqAff 0.011914 FreqUnaff 0.017253 2 1 2 2 1 2 1 1 1 2 HaploiD: 721 FreqAff 0.074627 FreqUnaff 0.025000 2 1 2 2 1 2 2 1 2 1 HaploiD: 730 FreqAff 0.005000 FreqUnaff 0.000000 2 1 2 2 1 2 2 2 1 1 HaploiD: 732 FreqAff 0.005000 FreqUnaff 0.000000 2 1 2 2 1 2 2 2 2 1 HaploiD: 734 FreqAff 0.143459 FreqUnaff 0.092747 2 1 2 2 1 2 2 2 2 2 HaploiD: 735 FreqAff 0.010000 FreqUnaff 0.010000 2 1 2 2 2 1 1 1 1 1 HaploiD: 736 FreqAff 0.005000 FreqUnaff 0.015000 2 1 2 2 2 1 1 1 1 2 HaploiD: 737 FreqAff 0.005000 FreqUnaff 0.000000 2 1 2 2 2 1 2 2 2 1 HaploiD: 750 FreqAff 0.010000 FreqUnaff 0.015000 200 independent case chromosomes could be incorporated into the analysis. 200 independent control chromosomes could be incorporated into the analysis. The following families could be incorporated into the estimation: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 All families could be incorporated. NUMBER OF PARAMETERS DIFFERENT FROM ZERO-1 = 34. Total number of haplotype explanations:290 altree-v1.3.1/test/create_file/phy-paml_file/trio.phy0000644000175000017500000000141112043315246022757 0ustar vdanjeanvdanjean 36 11 H019 2122121111 H026 2111212221 H004 2122112221 H020 1222211112 H034 2122211112 H027 1111221112 H023 1111212221 H016 2121122221 H002 1111122221 H015 1222211121 H006 1222212221 H001 1222211111 H010 1121211112 H028 1222211211 H024 2122122211 H017 1111211111 H009 1111222121 H007 1121212221 H033 2121211112 H008 2122122221 H029 2122211111 H003 1121111111 H035 1121212222 H013 2122121112 H032 2121121221 H025 2122212221 H021 2111122121 H030 1122212211 H031 2122122121 H012 1111222221 H005 2122122222 H011 1121211111 H022 2122111112 H014 2111211111 H018 1122211111 altree-v1.3.1/test/create_file/phy-paml_file/NUM0000644000175000017500000000101512043315246021642 0ustar vdanjeanvdanjeanH019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 altree-v1.3.1/test/create_file/phy-paml_file/fam19_0.gm0000644000175000017500000000013712043315246022745 0ustar vdanjeanvdanjeanMARKERID NAME LOCATION 1 L1 0 2 L2 1 3 L3 2 4 L4 3 5 L5 4 6 L6 5 7 L7 6 8 L8 7 9 L9 8 10 L10 9 altree-v1.3.1/test/create_file/phy-paml_file/fam19_00000644000175000017500000003745212043315246022355 0ustar vdanjeanvdanjean0 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 2 1 1 1 1 1 1 2 2 0 2 0 0 2 1 1 1 1 1 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 0 3 1 2 1 2 2 1 1 1 2 2 2 1 1 2 2 1 1 2 1 2 1 2 2 1 1 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 2 1 1 1 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 2 1 3 1 2 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1 1 1 2 96 2 0 0 2 1 1 2 2 1 2 2 2 2 2 2 1 1 1 2 2 2 1 2 1 1 96 3 1 2 2 2 2 1 1 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 97 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 1 97 2 0 0 2 1 1 1 1 1 2 1 1 1 2 1 1 2 2 2 2 2 2 2 1 1 97 3 1 2 2 2 1 1 1 1 2 1 1 1 2 1 1 2 2 2 2 2 2 2 1 1 98 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 2 1 2 1 2 1 1 1 98 2 0 0 2 1 2 2 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 2 1 1 98 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 99 1 0 0 1 1 1 2 2 1 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 99 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 2 1 99 3 1 2 1 2 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 altree-v1.3.1/test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES0000644000175000017500000001255412043315246024451 0ustar vdanjeanvdanjeanHAPLOTYPE EXPLANATIONS with weight >= 0.05 UNDER H1, i.e. depending on disease status. For nuclear families: HAPLO1=father's transmitted haplotype. HAPLO2=father's nontransmitted haplotype. HAPLO3=mother's transmitted haplotype. HAPLO4=mother's nontransmitted haplotype. Transmission is assigned with respect to first affected child of the family. Haplotpyes are coded as a single integer. See outputfile. Selected loci: 1 2 3 4 5 6 7 8 9 10 FID PID HAPLO1 HAPLO2 HAPLO3 HAPLO4 LIKELIHOOD_WEIGHT 0 parental_haplotypes 721 721 174 224 1.000000 1 parental_haplotypes 734 174 481 174 1.000000 2 parental_haplotypes 58 62 750 32 1.000000 3 parental_haplotypes 480 494 720 481 1.000000 4 parental_haplotypes 734 734 30 480 1.000000 5 parental_haplotypes 494 480 734 480 1.000000 6 parental_haplotypes 174 480 236 480 1.000000 7 parental_haplotypes 128 718 718 494 1.000000 8 parental_haplotypes 721 46 480 236 1.000000 9 parental_haplotypes 174 480 734 30 1.000000 10 parental_haplotypes 30 482 480 736 1.000000 11 parental_haplotypes 734 174 58 734 1.000000 12 parental_haplotypes 174 482 480 482 1.000000 13 parental_haplotypes 174 480 480 58 1.000000 14 parental_haplotypes 670 480 480 721 1.000000 15 parental_haplotypes 480 46 480 734 1.000000 16 parental_haplotypes 494 480 494 494 1.000000 17 parental_haplotypes 538 174 494 32 1.000000 18 parental_haplotypes 174 494 480 161 0.681434 18 parental_haplotypes 494 174 160 481 0.318566 19 parental_haplotypes 49 480 734 174 1.000000 20 parental_haplotypes 734 174 735 480 1.000000 21 parental_haplotypes 481 734 160 750 1.000000 22 parental_haplotypes 30 482 670 670 1.000000 23 parental_haplotypes 494 480 494 480 1.000000 24 parental_haplotypes 538 494 721 480 1.000000 25 parental_haplotypes 174 721 735 32 1.000000 26 parental_haplotypes 174 494 734 720 1.000000 27 parental_haplotypes 734 174 480 538 1.000000 28 parental_haplotypes 174 480 174 494 1.000000 29 parental_haplotypes 718 481 718 494 1.000000 30 parental_haplotypes 484 480 721 174 1.000000 31 parental_haplotypes 174 30 750 174 1.000000 32 parental_haplotypes 721 174 494 58 1.000000 33 parental_haplotypes 734 174 480 720 1.000000 34 parental_haplotypes 734 721 705 721 1.000000 35 parental_haplotypes 734 734 224 58 1.000000 36 parental_haplotypes 174 538 174 734 1.000000 37 parental_haplotypes 480 160 494 750 1.000000 38 parental_haplotypes 720 480 484 480 1.000000 39 parental_haplotypes 718 49 721 58 1.000000 40 parental_haplotypes 174 480 481 544 1.000000 41 parental_haplotypes 538 481 721 718 1.000000 42 parental_haplotypes 480 174 481 174 1.000000 43 parental_haplotypes 494 30 732 734 1.000000 44 parental_haplotypes 30 32 705 480 1.000000 45 parental_haplotypes 734 480 734 480 1.000000 46 parental_haplotypes 480 49 482 174 1.000000 47 parental_haplotypes 705 481 734 480 1.000000 48 parental_haplotypes 734 480 494 46 1.000000 49 parental_haplotypes 721 736 721 705 1.000000 50 parental_haplotypes 494 174 30 174 1.000000 51 parental_haplotypes 174 734 538 46 1.000000 52 parental_haplotypes 730 494 734 174 1.000000 53 parental_haplotypes 481 160 46 734 1.000000 54 parental_haplotypes 721 494 58 494 1.000000 55 parental_haplotypes 58 174 544 482 1.000000 56 parental_haplotypes 538 58 705 58 1.000000 57 parental_haplotypes 558 480 30 494 1.000000 58 parental_haplotypes 737 160 480 174 1.000000 59 parental_haplotypes 734 481 721 174 0.857527 59 parental_haplotypes 721 494 734 161 0.142473 60 parental_haplotypes 174 58 30 480 1.000000 61 parental_haplotypes 721 481 734 58 1.000000 62 parental_haplotypes 734 735 734 480 1.000000 63 parental_haplotypes 161 734 734 174 0.074654 63 parental_haplotypes 721 174 174 734 0.925346 64 parental_haplotypes 224 673 174 224 1.000000 65 parental_haplotypes 718 174 544 480 1.000000 66 parental_haplotypes 494 734 62 174 1.000000 67 parental_haplotypes 480 174 494 720 0.450625 67 parental_haplotypes 494 160 480 734 0.549375 68 parental_haplotypes 718 32 484 174 1.000000 69 parental_haplotypes 705 734 480 160 1.000000 70 parental_haplotypes 538 480 494 161 1.000000 71 parental_haplotypes 538 480 174 480 1.000000 72 parental_haplotypes 538 32 705 481 1.000000 73 parental_haplotypes 721 62 480 735 1.000000 74 parental_haplotypes 494 494 480 480 1.000000 75 parental_haplotypes 482 734 160 174 1.000000 76 parental_haplotypes 174 58 174 494 1.000000 77 parental_haplotypes 480 161 538 544 1.000000 78 parental_haplotypes 538 174 480 480 1.000000 79 parental_haplotypes 175 481 58 494 1.000000 80 parental_haplotypes 480 480 734 720 1.000000 81 parental_haplotypes 705 174 494 174 1.000000 82 parental_haplotypes 734 482 718 480 1.000000 83 parental_haplotypes 734 734 734 494 1.000000 84 parental_haplotypes 494 32 718 174 1.000000 85 parental_haplotypes 174 174 174 174 1.000000 86 parental_haplotypes 480 494 734 160 0.617218 86 parental_haplotypes 494 480 720 174 0.382782 87 parental_haplotypes 538 58 480 174 1.000000 88 parental_haplotypes 705 734 480 494 1.000000 89 parental_haplotypes 494 480 161 480 1.000000 90 parental_haplotypes 30 734 494 174 1.000000 91 parental_haplotypes 734 160 494 174 1.000000 92 parental_haplotypes 718 670 721 734 1.000000 93 parental_haplotypes 128 480 174 46 1.000000 94 parental_haplotypes 718 160 718 736 1.000000 95 parental_haplotypes 174 734 736 494 1.000000 96 parental_haplotypes 705 32 484 750 1.000000 97 parental_haplotypes 174 494 30 174 1.000000 98 parental_haplotypes 734 160 734 662 1.000000 99 parental_haplotypes 480 544 494 481 1.000000 altree-v1.3.1/test/create_file/phy-paml_file/trio.prephy0000644000175000017500000000141112043315246023466 0ustar vdanjeanvdanjean 36 11 H019 2122121111 H026 2111212221 H004 2122112221 H020 1222211112 H034 2122211112 H027 1111221112 H023 1111212221 H016 2121122221 H002 1111122221 H015 1222211121 H006 1222212221 H001 1222211111 H010 1121211112 H028 1222211211 H024 2122122211 H017 1111211111 H009 1111222121 H007 1121212221 H033 2121211112 H008 2122122221 H029 2122211111 H003 1121111111 H035 1121212222 H013 2122121112 H032 2121121221 H025 2122212221 H021 2111122121 H030 1122212211 H031 2122122121 H012 1111222221 H005 2122122222 H011 1121211111 H022 2122111112 H014 2111211111 H018 1122211111 altree-v1.3.1/test/create_file/phy-paml_file/nb_cas_control.txt0000644000175000017500000000101512043315246025006 0ustar vdanjeanvdanjeanH019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 altree-v1.3.1/test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt0000644000175000017500000000343212043315246026306 0ustar vdanjeanvdanjeanM1 M2 Alleles1 Alleles2 NHAPLOTYPES dprime delta2 DFchisq chisquare 1 2 2 2 200 1.000000 0.176574 1 35.315 1 3 2 2 200 0.392097 0.010018 1 2.004 1 4 2 2 200 0.554676 0.071298 1 14.260 1 5 2 2 200 0.901961 0.662078 1 132.416 1 6 2 2 200 0.628731 0.354774 1 70.955 1 7 2 2 200 0.210021 0.012016 1 2.403 1 8 2 2 200 0.252254 0.021605 1 4.321 1 9 2 2 200 0.204515 0.010095 1 2.019 1 10 2 2 200 0.204319 0.017659 1 3.532 2 3 2 2 200 1.000000 0.121928 1 24.386 2 4 2 2 200 1.000000 0.433623 1 86.725 2 5 2 2 200 1.000000 0.143701 1 28.740 2 6 2 2 200 1.000000 0.196745 1 39.349 2 7 2 2 200 0.497517 0.160440 1 32.088 2 8 2 2 200 0.439335 0.100379 1 20.076 2 9 2 2 200 0.377665 0.104344 1 20.869 2 10 2 2 200 0.053484 0.000647 1 0.129 3 4 2 2 200 1.000000 0.281184 1 56.237 3 5 2 2 200 0.285714 0.004329 1 0.866 3 6 2 2 200 0.386385 0.092521 1 18.504 3 7 2 2 200 0.209726 0.008274 1 1.655 3 8 2 2 200 0.398496 0.030477 1 6.095 3 9 2 2 200 0.155844 0.004048 1 0.810 3 10 2 2 200 0.503106 0.006977 1 1.395 4 5 2 2 200 0.534884 0.053958 1 10.792 4 6 2 2 200 0.002408 0.000003 1 0.001 4 7 2 2 200 0.356991 0.085257 1 17.051 4 8 2 2 200 0.180721 0.027232 1 5.446 4 9 2 2 200 0.339576 0.068349 1 13.670 4 10 2 2 200 0.411136 0.016570 1 3.314 5 6 2 2 200 0.899329 0.590736 1 118.147 5 7 2 2 200 0.444115 0.043727 1 8.745 5 8 2 2 200 0.454732 0.057137 1 11.427 5 9 2 2 200 0.463032 0.042114 1 8.423 5 10 2 2 200 0.184783 0.017747 1 3.549 6 7 2 2 200 0.522293 0.082801 1 16.560 6 8 2 2 200 0.161508 0.009868 1 1.974 6 9 2 2 200 0.534286 0.076771 1 15.354 6 10 2 2 200 0.182959 0.012708 1 2.542 7 8 2 2 200 0.977604 0.766800 1 153.360 7 9 2 2 200 0.978559 0.848432 1 169.686 7 10 2 2 200 0.835931 0.102394 1 20.479 8 9 2 2 200 0.976077 0.677278 1 135.456 8 10 2 2 200 0.816934 0.078463 1 15.693 9 10 2 2 200 0.844720 0.118009 1 23.602 altree-v1.3.1/test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt0000644000175000017500000000343312043315246025702 0ustar vdanjeanvdanjeanM1 M2 Alleles1 Alleles2 NHAPLOTYPES dprime delta2 DFchisq chisquare 1 2 2 2 200 1.000000 0.334187 1 66.837 1 3 2 2 200 0.002933 0.000002 1 0.000 1 4 2 2 200 0.452991 0.080837 1 16.167 1 5 2 2 200 0.853249 0.671707 1 134.341 1 6 2 2 200 0.631761 0.318491 1 63.698 1 7 2 2 200 0.101981 0.005106 1 1.021 1 8 2 2 200 0.055953 0.003007 1 0.601 1 9 2 2 200 0.072351 0.002570 1 0.514 1 10 2 2 200 0.580537 0.087377 1 17.475 2 3 2 2 200 1.000000 0.074923 1 14.985 2 4 2 2 200 1.000000 0.196661 1 39.332 2 5 2 2 200 1.000000 0.362211 1 72.442 2 6 2 2 200 1.000000 0.266674 1 53.335 2 7 2 2 200 0.401341 0.109652 1 21.930 2 8 2 2 200 0.208701 0.022642 1 4.528 2 9 2 2 200 0.346168 0.081576 1 16.315 2 10 2 2 200 0.507389 0.022305 1 4.461 3 4 2 2 200 1.000000 0.380974 1 76.195 3 5 2 2 200 0.330493 0.022593 1 4.519 3 6 2 2 200 0.786724 0.173891 1 34.778 3 7 2 2 200 0.741935 0.060584 1 12.117 3 8 2 2 200 0.308756 0.022256 1 4.451 3 9 2 2 200 0.741935 0.060584 1 12.117 3 10 2 2 200 0.815668 0.025887 1 5.177 4 5 2 2 200 0.214403 0.019627 1 3.925 4 6 2 2 200 0.084552 0.005272 1 1.054 4 7 2 2 200 0.655661 0.124191 1 24.838 4 8 2 2 200 0.147089 0.008185 1 1.637 4 9 2 2 200 0.655661 0.124191 1 24.838 4 10 2 2 200 0.729701 0.054382 1 10.876 5 6 2 2 200 0.832816 0.510643 1 102.129 5 7 2 2 200 0.196932 0.020635 1 4.127 5 8 2 2 200 0.025432 0.000451 1 0.090 5 9 2 2 200 0.168563 0.015118 1 3.024 5 10 2 2 200 0.510800 0.062411 1 12.482 6 7 2 2 200 0.382004 0.057165 1 11.433 6 8 2 2 200 0.012390 0.000128 1 0.026 6 9 2 2 200 0.348248 0.047508 1 9.502 6 10 2 2 200 0.193641 0.012183 1 2.437 7 8 2 2 200 0.904762 0.625108 1 125.022 7 9 2 2 200 0.957333 0.916487 1 183.297 7 10 2 2 200 0.862857 0.263215 1 52.643 8 9 2 2 200 0.857143 0.561039 1 112.208 8 10 2 2 200 0.846939 0.193653 1 38.731 9 10 2 2 200 0.862857 0.263215 1 52.643 altree-v1.3.1/test/create_file/paup_file/0000755000175000017500000000000012252703410020475 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/create_file/paup_file/create_file0000755000175000017500000000056312043315246022675 0ustar vdanjeanvdanjean#!/bin/sh -x # To run phase ~/phase/phase.2.0.2.linux/PHASE -c-1 caco.phase caco.phase.out 100 1 100 # To obtain a paup input file ../../../altree-convert -i caco.phase.out -p paup \ -t NUM -r phase -c nb_cas_control.txt -o caco.prepaup # Warning: the file caco.prepaup is not a valid paup input file. # You must select options, file names, etc before running paup altree-v1.3.1/test/create_file/paup_file/caco.phase0000644000175000017500000001434412043315246022436 0ustar vdanjeanvdanjean200 12 P 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760 SSSSSSSSSSSS 1 1 222222222222 222222222222 1 2 222222222222 222222222222 1 3 222222222222 112221111121 1 4 222222222222 222212222222 1 5 222221111122 112221111112 1 6 222222222222 222222222222 1 7 222222222222 112221112112 1 8 222222222222 222222222222 1 9 112221111112 222222222222 1 10 112221111112 222222222222 1 11 112221111112 112221112112 1 12 112221111112 222222222222 1 13 222222222222 112222222222 1 14 112221111112 222222222222 1 15 222221122222 222222222222 1 16 112221111112 112222222222 1 17 112222222222 222222222222 1 18 222222222222 222222222222 1 19 222222222222 112222222222 1 20 222222222222 222212222222 1 21 112221112222 112222222222 1 22 222221111121 112221111112 1 23 222221111121 222222222222 1 24 112221111112 222212222222 1 25 112221111112 222222222222 1 26 222222222222 112221111112 1 27 222222222222 112221112112 1 28 222222222222 222222222222 1 29 112221111122 222222222222 1 30 222222222222 112221112222 1 31 222221111122 222222222222 1 32 221122222222 112222222222 1 33 112221111112 222222222222 1 34 222222222222 112221111112 1 35 112221112112 112221111122 1 36 222222222222 222222222222 1 37 112221111121 222222222222 1 38 112221111122 222222222222 1 39 222222222222 222221111122 1 40 221222222221 112221111112 1 41 222222222222 222222222222 1 42 221222222221 222222222222 1 43 112221112112 222221111121 1 44 222222222222 222222222222 1 45 112221112112 222222222222 1 46 222222222222 112222222222 1 47 112221111121 112221111121 1 48 222222222222 222222222222 1 49 112221111112 222222222222 1 50 222222222222 112221111112 1 51 222222222222 221122222222 1 52 222222222222 112221111121 1 53 222222222222 222222222222 1 54 222222222222 222221111121 1 55 222222222222 112221111112 1 56 112221112222 222222222222 1 57 221222222221 112221111112 1 58 222221111122 112221111122 1 59 222221122222 112221112222 1 60 222222222222 112221112112 1 61 222222222222 222222222222 1 62 222222222222 222212222222 1 63 222222222222 222222222222 1 64 222221111112 112222222222 1 65 222222222222 222222222222 1 66 221222222221 222221111121 1 67 112222222222 222222222222 1 68 222222222222 112221111112 1 69 222222222222 222222222222 1 70 112221111121 112221111112 1 71 222222222222 221222222221 1 72 222222222222 222212222222 1 73 222222222222 222222222222 1 74 222222222222 222222222222 1 75 222212222222 222212222222 1 76 222221111112 222221111121 1 77 222222222222 222222222222 1 78 222222222222 222222222222 1 79 112221111112 112221112112 1 80 112221111112 112221111122 1 81 221222222221 222222222222 1 82 221122222222 222222222222 1 83 222222222222 112221111112 1 84 222221111121 112221112112 1 85 222222222222 112222222222 1 86 222222222222 112221111112 1 87 221222222221 222222222222 1 88 222221111122 222222222222 1 89 221122222222 222222222222 1 90 222222222222 222222222222 1 91 112221111122 112222222222 1 92 112221111112 112221111112 1 93 221122222222 112221111121 1 94 112222222222 222222222222 1 95 222222222222 112221111121 1 96 222222222222 112221111112 1 97 222222222222 222222222222 1 98 222222222222 112221111122 1 99 222222222222 112221111122 1 100 222222222222 222222222222 0 101 222222222222 222222222222 0 102 222222222222 221122222222 0 103 222222222222 222222222222 0 104 222222222222 112221111112 0 105 222222222222 222222222222 0 106 222221111121 222222222222 0 107 112221111122 222222222222 0 108 222222222222 222221111121 0 109 222222222222 222222222222 0 110 222222222222 112221111122 0 111 222221111121 222222222222 0 112 222222222222 222221111112 0 113 221122222222 222222222222 0 114 222222222222 222222222222 0 115 112222222222 222222222222 0 116 222221111121 221122222222 0 117 222222222222 222222222222 0 118 222222222222 222222222222 0 119 112221112222 222222222222 0 120 222221122222 222222222222 0 121 222222222222 222222222222 0 122 222222222222 222222222222 0 123 222221111121 222221111121 0 124 222222222222 222221111112 0 125 222222222222 112222222222 0 126 222222222222 222222222222 0 127 112222222222 112221111122 0 128 112221111112 222222222222 0 129 222221122222 222222222222 0 130 222222222222 222222222222 0 131 222222222222 222212222222 0 132 222222222222 222222222222 0 133 222222222222 222222222222 0 134 222222222222 222222222222 0 135 222221111121 222221111121 0 136 222222222222 222222222222 0 137 221122222222 222222222222 0 138 222221111121 222222222222 0 139 222222222222 112221111121 0 140 222222222222 222221111122 0 141 222222222222 222222222222 0 142 222221122222 222222222222 0 143 222222222222 222222222222 0 144 221222222221 222222222222 0 145 221222222221 222222222222 0 146 222222222222 222222222222 0 147 222212222222 222222222222 0 148 222222222222 222221111121 0 149 112221112222 222222222222 0 150 222222222222 222222222222 0 151 222212222222 222222222222 0 152 222222222222 112221111122 0 153 222221111112 221222222221 0 154 222222222222 222222222222 0 155 222222222222 222222222222 0 156 112222222222 222222222222 0 157 222222222222 222222222222 0 158 112221112112 222222222222 0 159 222221111112 222222222222 0 160 222222222222 222222222222 0 161 222222222222 112221111112 0 162 222222222222 222222222222 0 163 221222222221 222222222222 0 164 222222222222 221222222221 0 165 112222222222 222222222222 0 166 222222222222 222222222222 0 167 221122222222 222222222222 0 168 222222222222 112221111112 0 169 222222222222 222221111121 0 170 222222222222 222222222222 0 171 112222222222 112221111122 0 172 222222222222 222221122222 0 173 222222222222 222222222222 0 174 221222222221 222222222222 0 175 222222222222 222222222222 0 176 112221111112 222222222222 0 177 222222222222 222222222222 0 178 222222222222 222222222222 0 179 222222222222 222222222222 0 180 112221111122 222222222222 0 181 222212222222 222222222222 0 182 222222222222 222222222222 0 183 222221111121 222222222222 0 184 112221111112 112221111112 0 185 222222222222 221222222221 0 186 222212222222 112222222222 0 187 222222222222 222222222222 0 188 222222222222 112221112112 0 189 112221111121 222221111112 0 190 112221111112 221122222222 0 191 112221111112 222222222222 0 192 222222222222 222222222222 0 193 222222222222 222222222222 0 194 222222222222 112221111112 0 195 112221111112 222222222222 0 196 222222222222 112222222222 0 197 112222222222 222222222222 0 198 112221111121 112221111112 0 199 222222222222 222222222222 0 200 222222222222 222222222222 altree-v1.3.1/test/create_file/paup_file/caco.prepaup0000644000175000017500000000220712043315246023005 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=15 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H004 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 H000_ancetre [add ancestral haplotype] ; end; begin assumptions; ancstates *anc vector = [add ancestral haplotype]; end; begin paup; set nowarnreset autoclose maxtrees = [2000] increase=[no - Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=[deltran - acctran] ancstates=anc; hsearch; savetrees [from=1 to=1] file=[test.tree] root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=[test.tree]; log file = [test.res.log] replace=[yes - no]; describetrees [all] /plot=[cladogram - phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/create_file/paup_file/caco.phase.out0000644000175000017500000010171212043315246023240 0ustar vdanjeanvdanjean************************************************************* **** **** **** Output from PHASE v2.0.2 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/cbardel/phase/phase.2.0.2.linux/PHASE -c-1 caco.phase caco.phase.out 100 1 100 END COMMAND_LINE BEGIN OUTFILE_LIST caco.phase.out_freqs : haplotype frequency estimates caco.phase.out_pairs : most likely haplotype pairs for each individual caco.phase.out_recom : estimates of recombination parameters caco.phase.out_signif : p-value for testing cases vs controls caco.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 200 Number of Loci: 12 Positions of loci: 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file caco.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 222222222222 224.000000 2 222221122222 6.000000 3 222221111122 6.000000 4 222221111121 20.000000 5 222221111112 5.000000 6 222212222222 12.000000 7 221222222221 14.000000 8 221122222222 11.000000 9 112222222222 20.000000 10 112221112222 6.000000 11 112221112112 11.000000 12 112221111122 14.000000 13 112221111121 10.000000 14 112221111112 41.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY 1: (1,1) 2: (1,1) 3: (1,13) 4: (1,6) 5: (3,14) 6: (1,1) 7: (1,11) 8: (1,1) 9: (1,14) 10: (1,14) 11: (11,14) 12: (1,14) 13: (1,9) 14: (1,14) 15: (1,2) 16: (9,14) 17: (1,9) 18: (1,1) 19: (1,9) 20: (1,6) 21: (9,10) 22: (4,14) 23: (1,4) 24: (6,14) 25: (1,14) 26: (1,14) 27: (1,11) 28: (1,1) 29: (1,12) 30: (1,10) 31: (1,3) 32: (8,9) 33: (1,14) 34: (1,14) 35: (11,12) 36: (1,1) 37: (1,13) 38: (1,12) 39: (1,3) 40: (7,14) 41: (1,1) 42: (1,7) 43: (4,11) 44: (1,1) 45: (1,11) 46: (1,9) 47: (13,13) 48: (1,1) 49: (1,14) 50: (1,14) 51: (1,8) 52: (1,13) 53: (1,1) 54: (1,4) 55: (1,14) 56: (1,10) 57: (7,14) 58: (3,12) 59: (2,10) 60: (1,11) 61: (1,1) 62: (1,6) 63: (1,1) 64: (1,14) 65: (1,1) 66: (4,7) 67: (1,9) 68: (1,14) 69: (1,1) 70: (13,14) 71: (1,7) 72: (1,6) 73: (1,1) 74: (1,1) 75: (6,6) 76: (4,5) 77: (1,1) 78: (1,1) 79: (11,14) 80: (12,14) 81: (1,7) 82: (1,8) 83: (1,14) 84: (4,11) 85: (1,9) 86: (1,14) 87: (1,7) 88: (1,3) 89: (1,8) 90: (1,1) 91: (9,12) 92: (14,14) 93: (8,13) 94: (1,9) 95: (1,13) 96: (1,14) 97: (1,1) 98: (1,12) 99: (1,12) 100: (1,1) 101: (1,1) 102: (1,8) 103: (1,1) 104: (1,14) 105: (1,1) 106: (1,4) 107: (1,12) 108: (1,4) 109: (1,1) 110: (1,12) 111: (1,4) 112: (1,5) 113: (1,8) 114: (1,1) 115: (1,9) 116: (4,8) 117: (1,1) 118: (1,1) 119: (1,10) 120: (1,2) 121: (1,1) 122: (1,1) 123: (4,4) 124: (1,5) 125: (1,9) 126: (1,1) 127: (9,12) 128: (1,14) 129: (1,2) 130: (1,1) 131: (1,6) 132: (1,1) 133: (1,1) 134: (1,1) 135: (4,4) 136: (1,1) 137: (1,8) 138: (1,4) 139: (1,13) 140: (1,3) 141: (1,1) 142: (1,2) 143: (1,1) 144: (1,7) 145: (1,7) 146: (1,1) 147: (1,6) 148: (1,4) 149: (1,10) 150: (1,1) 151: (1,6) 152: (1,12) 153: (5,7) 154: (1,1) 155: (1,1) 156: (1,9) 157: (1,1) 158: (1,11) 159: (1,5) 160: (1,1) 161: (1,14) 162: (1,1) 163: (1,7) 164: (1,7) 165: (1,9) 166: (1,1) 167: (1,8) 168: (1,14) 169: (1,4) 170: (1,1) 171: (9,12) 172: (1,2) 173: (1,1) 174: (1,7) 175: (1,1) 176: (1,14) 177: (1,1) 178: (1,1) 179: (1,1) 180: (1,12) 181: (1,6) 182: (1,1) 183: (1,4) 184: (14,14) 185: (1,7) 186: (6,9) 187: (1,1) 188: (1,11) 189: (4,14) 190: (8,14) 191: (1,14) 192: (1,1) 193: (1,1) 194: (1,14) 195: (1,14) 196: (1,9) 197: (1,9) 198: (13,14) 199: (1,1) 200: (1,1) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 3 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 1 4 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 5 2 2 2 2 2 1 1 1 1 1 (2) 2 1 1 2 2 2 1 1 1 1 1 (1) 2 1 6 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 7 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 1 8 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 9 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 10 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 11 1 1 2 2 2 1 1 1 2 1 1 2 1 1 2 2 2 1 1 1 1 1 1 2 1 12 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 13 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 14 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 15 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 16 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 17 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 18 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 19 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 20 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 21 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 22 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 2 1 23 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 1 24 2 2 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 25 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 26 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 27 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 1 28 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 29 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 30 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 31 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 1 32 2 2 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 33 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 34 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 35 1 1 2 2 2 1 1 1 2 1 1 2 1 1 2 2 2 1 1 1 1 1 2 2 1 36 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 37 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 1 38 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 39 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 1 40 2 2 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 2 1 41 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 42 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 43 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 2 1 1 2 1 44 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 45 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 1 46 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 47 1 1 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 2 1 1 48 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 49 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 50 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 51 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 52 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 1 53 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 54 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 1 55 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 56 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 57 2 2 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 2 1 58 2 2 2 2 2 1 1 1 1 1 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 59 2 2 2 2 2 1 1 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 60 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 1 61 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 62 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 63 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 64 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 65 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 66 2 2 2 2 2 1 1 1 1 1 2 1 2 2 1 2 2 2 2 2 2 2 2 1 1 67 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 68 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 69 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 70 1 1 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 2 1 71 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 72 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 73 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 74 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 75 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 76 2 2 2 2 2 1 1 1 1 1 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 77 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 78 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 79 1 1 2 2 2 1 1 1 2 1 1 2 1 1 2 2 2 1 1 1 1 1 1 2 1 80 1 1 2 2 2 1 1 1 1 1 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 81 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 82 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 83 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 84 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 2 1 1 2 1 85 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 86 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 87 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 88 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 1 89 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 90 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 91 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 92 1 1 2 2 2 1 1 1 1 1 1 2 1 1 2 2 2 1 1 1 1 1 1 2 1 93 2 2 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 1 1 94 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 95 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 1 96 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 97 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 98 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 99 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 100 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 101 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 102 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 0 103 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 104 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 105 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 106 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 107 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 108 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 109 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 110 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 111 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 112 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 0 113 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 0 114 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 115 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 116 2 2 2 2 2 1 1 1 1 1 2 1 2 2 1 1 2 2 2 2 2 2 2 2 0 117 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 118 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 119 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 0 120 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 0 121 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 122 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 123 2 2 2 2 2 1 1 1 1 1 2 1 2 2 2 2 2 1 1 1 1 1 2 1 0 124 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 0 125 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 126 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 127 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 128 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 129 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 0 130 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 131 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 132 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 133 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 134 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 135 2 2 2 2 2 1 1 1 1 1 2 1 2 2 2 2 2 1 1 1 1 1 2 1 0 136 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 137 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 0 138 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 139 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 0 140 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 0 141 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 142 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 0 143 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 144 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 145 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 146 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 147 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 148 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 149 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 0 150 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 151 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 152 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 153 2 2 2 2 2 1 1 1 1 1 1 2 2 2 1 2 2 2 2 2 2 2 2 1 0 154 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 155 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 156 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 157 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 158 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 0 159 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 0 160 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 161 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 162 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 163 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 164 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 165 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 166 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 167 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 0 168 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 169 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 170 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 171 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 172 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 0 173 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 174 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 175 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 176 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 177 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 178 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 179 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 180 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 181 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 182 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 183 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 184 1 1 2 2 2 1 1 1 1 1 1 2 1 1 2 2 2 1 1 1 1 1 1 2 0 185 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 186 2 2 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 187 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 188 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 0 189 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 2 0 190 2 2 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 191 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 192 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 193 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 194 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 195 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 196 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 197 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 198 1 1 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 2 0 199 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 200 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 1 1 = = = = = = = = = = = = = = = = = = = = = = = = 1 2 = = = = = = = = = = = = = = = = = = = = = = = = 1 3 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 1 4 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 1 5 2 2 = = = = = = = = (2) = 1 1 = = = = = = = = (1) = 1 6 = = = = = = = = = = = = = = = = = = = = = = = = 1 7 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 1 8 = = = = = = = = = = = = = = = = = = = = = = = = 1 9 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 10 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 11 = = = = = = = = 2 = = = = = = = = = = = 1 = = = 1 12 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 13 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 14 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 15 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 1 16 = = = = = 2 2 2 2 2 2 = = = = = = 1 1 1 1 1 1 = 1 17 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 18 = = = = = = = = = = = = = = = = = = = = = = = = 1 19 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 20 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 1 21 = = = = = 2 2 2 = = = = = = = = = 1 1 1 = = = = 1 22 2 2 = = = = = = = = 2 1 1 1 = = = = = = = = 1 2 1 23 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 1 24 2 2 = = 1 2 2 2 2 2 2 = 1 1 = = 2 1 1 1 1 1 1 = 1 25 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 26 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 27 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 1 28 = = = = = = = = = = = = = = = = = = = = = = = = 1 29 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 1 30 2 2 = = = 2 2 2 = = = = 1 1 = = = 1 1 1 = = = = 1 31 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 1 32 2 2 1 1 = = = = = = = = 1 1 2 2 = = = = = = = = 1 33 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 34 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 35 = = = = = = = = 2 = 1 = = = = = = = = = 1 = 2 = 1 36 = = = = = = = = = = = = = = = = = = = = = = = = 1 37 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 1 38 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 1 39 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 1 40 2 2 1 = = 2 2 2 2 2 2 1 1 1 2 = = 1 1 1 1 1 1 2 1 41 = = = = = = = = = = = = = = = = = = = = = = = = 1 42 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 1 43 2 2 = = = = = = 1 = 2 1 1 1 = = = = = = 2 = 1 2 1 44 = = = = = = = = = = = = = = = = = = = = = = = = 1 45 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 1 46 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 47 = = = = = = = = = = = = = = = = = = = = = = = = 1 48 = = = = = = = = = = = = = = = = = = = = = = = = 1 49 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 50 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 51 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 1 52 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 1 53 = = = = = = = = = = = = = = = = = = = = = = = = 1 54 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 1 55 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 56 2 2 = = = 2 2 2 = = = = 1 1 = = = 1 1 1 = = = = 1 57 2 2 1 = = 2 2 2 2 2 2 1 1 1 2 = = 1 1 1 1 1 1 2 1 58 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 59 2 2 = = = = = 2 = = = = 1 1 = = = = = 1 = = = = 1 60 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 1 61 = = = = = = = = = = = = = = = = = = = = = = = = 1 62 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 1 63 = = = = = = = = = = = = = = = = = = = = = = = = 1 64 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 65 = = = = = = = = = = = = = = = = = = = = = = = = 1 66 = = 2 = = 1 1 1 1 1 = = = = 1 = = 2 2 2 2 2 = = 1 67 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 68 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 69 = = = = = = = = = = = = = = = = = = = = = = = = 1 70 = = = = = = = = = = 2 1 = = = = = = = = = = 1 2 1 71 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 1 72 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 1 73 = = = = = = = = = = = = = = = = = = = = = = = = 1 74 = = = = = = = = = = = = = = = = = = = = = = = = 1 75 = = = = = = = = = = = = = = = = = = = = = = = = 1 76 = = = = = = = = = = 2 1 = = = = = = = = = = 1 2 1 77 = = = = = = = = = = = = = = = = = = = = = = = = 1 78 = = = = = = = = = = = = = = = = = = = = = = = = 1 79 = = = = = = = = 2 = = = = = = = = = = = 1 = = = 1 80 = = = = = = = = = = 2 = = = = = = = = = = = 1 = 1 81 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 1 82 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 1 83 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 84 2 2 = = = = = = 1 = 2 1 1 1 = = = = = = 2 = 1 2 1 85 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 86 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 87 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 1 88 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 1 89 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 1 90 = = = = = = = = = = = = = = = = = = = = = = = = 1 91 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 1 92 = = = = = = = = = = = = = = = = = = = = = = = = 1 93 2 2 1 1 = 2 2 2 2 2 = 2 1 1 2 2 = 1 1 1 1 1 = 1 1 94 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 95 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 1 96 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 97 = = = = = = = = = = = = = = = = = = = = = = = = 1 98 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 1 99 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 1 100 = = = = = = = = = = = = = = = = = = = = = = = = 0 101 = = = = = = = = = = = = = = = = = = = = = = = = 0 102 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 0 103 = = = = = = = = = = = = = = = = = = = = = = = = 0 104 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 105 = = = = = = = = = = = = = = = = = = = = = = = = 0 106 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 107 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 0 108 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 109 = = = = = = = = = = = = = = = = = = = = = = = = 0 110 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 0 111 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 112 = = = = = 2 2 2 2 2 2 = = = = = = 1 1 1 1 1 1 = 0 113 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 0 114 = = = = = = = = = = = = = = = = = = = = = = = = 0 115 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 116 = = 2 2 = 1 1 1 1 1 = 1 = = 1 1 = 2 2 2 2 2 = 2 0 117 = = = = = = = = = = = = = = = = = = = = = = = = 0 118 = = = = = = = = = = = = = = = = = = = = = = = = 0 119 2 2 = = = 2 2 2 = = = = 1 1 = = = 1 1 1 = = = = 0 120 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 0 121 = = = = = = = = = = = = = = = = = = = = = = = = 0 122 = = = = = = = = = = = = = = = = = = = = = = = = 0 123 = = = = = = = = = = = = = = = = = = = = = = = = 0 124 = = = = = 2 2 2 2 2 2 = = = = = = 1 1 1 1 1 1 = 0 125 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 126 = = = = = = = = = = = = = = = = = = = = = = = = 0 127 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 0 128 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 129 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 0 130 = = = = = = = = = = = = = = = = = = = = = = = = 0 131 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 0 132 = = = = = = = = = = = = = = = = = = = = = = = = 0 133 = = = = = = = = = = = = = = = = = = = = = = = = 0 134 = = = = = = = = = = = = = = = = = = = = = = = = 0 135 = = = = = = = = = = = = = = = = = = = = = = = = 0 136 = = = = = = = = = = = = = = = = = = = = = = = = 0 137 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 0 138 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 139 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 0 140 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 0 141 = = = = = = = = = = = = = = = = = = = = = = = = 0 142 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 0 143 = = = = = = = = = = = = = = = = = = = = = = = = 0 144 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 145 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 146 = = = = = = = = = = = = = = = = = = = = = = = = 0 147 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 0 148 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 149 2 2 = = = 2 2 2 = = = = 1 1 = = = 1 1 1 = = = = 0 150 = = = = = = = = = = = = = = = = = = = = = = = = 0 151 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 0 152 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 0 153 = = 2 = = 1 1 1 1 1 1 2 = = 1 = = 2 2 2 2 2 2 1 0 154 = = = = = = = = = = = = = = = = = = = = = = = = 0 155 = = = = = = = = = = = = = = = = = = = = = = = = 0 156 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 157 = = = = = = = = = = = = = = = = = = = = = = = = 0 158 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 0 159 = = = = = 2 2 2 2 2 2 = = = = = = 1 1 1 1 1 1 = 0 160 = = = = = = = = = = = = = = = = = = = = = = = = 0 161 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 162 = = = = = = = = = = = = = = = = = = = = = = = = 0 163 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 164 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 165 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 166 = = = = = = = = = = = = = = = = = = = = = = = = 0 167 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 0 168 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 169 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 170 = = = = = = = = = = = = = = = = = = = = = = = = 0 171 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 0 172 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 0 173 = = = = = = = = = = = = = = = = = = = = = = = = 0 174 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 175 = = = = = = = = = = = = = = = = = = = = = = = = 0 176 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 177 = = = = = = = = = = = = = = = = = = = = = = = = 0 178 = = = = = = = = = = = = = = = = = = = = = = = = 0 179 = = = = = = = = = = = = = = = = = = = = = = = = 0 180 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 0 181 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 0 182 = = = = = = = = = = = = = = = = = = = = = = = = 0 183 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 184 = = = = = = = = = = = = = = = = = = = = = = = = 0 185 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 186 2 2 = = 1 = = = = = = = 1 1 = = 2 = = = = = = = 0 187 = = = = = = = = = = = = = = = = = = = = = = = = 0 188 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 0 189 2 2 = = = = = = = = 2 1 1 1 = = = = = = = = 1 2 0 190 2 2 1 1 = 2 2 2 2 2 2 = 1 1 2 2 = 1 1 1 1 1 1 = 0 191 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 192 = = = = = = = = = = = = = = = = = = = = = = = = 0 193 = = = = = = = = = = = = = = = = = = = = = = = = 0 194 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 195 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 196 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 197 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 198 = = = = = = = = = = 2 1 = = = = = = = = = = 1 2 0 199 = = = = = = = = = = = = = = = = = = = = = = = = 0 200 = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = = = = = = = = = = = = = = = = = = = = = = 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = = = = = 1.00 1.00 = = = = = = = = 0.72 = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 1.00 = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 = = = = 0.93 0.93 = = = = = = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = 0.96 0.96 1.00 1.00 = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 0.99 0.99 = = = = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = = = = = 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = 1.00 1.00 = = = = = 1.00 = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = = = = = = = = 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = 1.00 = = = 1.00 = = = = = = = = 1.00 = = 1.00 1.00 = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.99 0.99 = = = = = = 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = 0.98 0.98 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = 1.00 = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 1.00 1.00 = = 0.96 = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 0.93 0.93 = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS altree-v1.3.1/test/create_file/paup_file/caco.phase.out_monitor0000644000175000017500000000156412043315246025013 0ustar vdanjeanvdanjean-613.766 -613.357 -613.393 -613.016 -613.967 -613.729 -613.375 -614.267 -613.225 -614.541 -613.865 -615.541 -613.931 -612.346 -614.596 -614.393 -614.534 -613.869 -613.663 -613.636 -613.661 -614.697 -614.782 -613.689 -613.687 -613.223 -614.346 -613.48 -613.441 -613.017 -613.231 -613.324 -614.747 -614.169 -614.61 -613.456 -613.649 -613.52 -614.671 -615.592 -615.045 -614.39 -614.256 -613.451 -614.576 -613.898 -613.09 -613.859 -613.1 -612.794 -614.097 -614.181 -615.393 -613.269 -613.612 -613.473 -613.996 -613.887 -614.126 -615.226 -616.669 -613.957 -613.176 -613.049 -613.82 -613.907 -613.262 -613.53 -613.178 -614.283 -616.27 -614.025 -613.885 -613.431 -614.968 -614.325 -613.745 -614.61 -613.915 -613.513 -613.473 -614.055 -613.018 -613.077 -613.283 -613.654 -613.29 -613.179 -613.47 -612.917 -615.48 -612.41 -614.563 -613.713 -613.457 -614.041 -616.037 -613.439 -614.21 -614.558 altree-v1.3.1/test/create_file/paup_file/nb_cas_control.txt0000644000175000017500000000032212043315246024224 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H004 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/create_file/paup_file/caco.phase.out_pairs0000644000175000017500000002431012043315246024434 0ustar vdanjeanvdanjeanIND: 1 222222222222 , 222222222222 , 1.000 IND: 2 222222222222 , 222222222222 , 1.000 IND: 3 222222222222 , 112221111121 , 0.792 222221111121 , 112222222222 , 0.206 IND: 4 222222222222 , 222212222222 , 1.000 IND: 5 222221111122 , 112221111112 , 0.725 222221111112 , 112221111122 , 0.275 IND: 6 222222222222 , 222222222222 , 1.000 IND: 7 222222222222 , 112221112112 , 0.999 IND: 8 222222222222 , 222222222222 , 1.000 IND: 9 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 10 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 11 112221112112 , 112221111112 , 1.000 IND: 12 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 13 222222222222 , 112222222222 , 1.000 IND: 14 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 15 222222222222 , 222221122222 , 1.000 IND: 16 112222222222 , 112221111112 , 1.000 IND: 17 222222222222 , 112222222222 , 1.000 IND: 18 222222222222 , 222222222222 , 1.000 IND: 19 222222222222 , 112222222222 , 1.000 IND: 20 222222222222 , 222212222222 , 1.000 IND: 21 112222222222 , 112221112222 , 1.000 IND: 22 222221111121 , 112221111112 , 0.931 222221111112 , 112221111121 , 0.068 IND: 23 222222222222 , 222221111121 , 1.000 IND: 24 222212222222 , 112221111112 , 0.998 IND: 25 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 26 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 27 222222222222 , 112221112112 , 0.999 IND: 28 222222222222 , 222222222222 , 1.000 IND: 29 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 30 222222222222 , 112221112222 , 0.999 IND: 31 222222222222 , 222221111122 , 1.000 IND: 32 222222222222 , 111122222222 , 0.040 221122222222 , 112222222222 , 0.960 IND: 33 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 34 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 35 112221112112 , 112221111122 , 1.000 IND: 36 222222222222 , 222222222222 , 1.000 IND: 37 222222222222 , 112221111121 , 0.791 222221111121 , 112222222222 , 0.207 IND: 38 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 39 222222222222 , 222221111122 , 1.000 IND: 40 221222222221 , 112221111112 , 0.999 IND: 41 222222222222 , 222222222222 , 1.000 IND: 42 222222222222 , 221222222221 , 1.000 IND: 43 222221111121 , 112221112112 , 0.995 IND: 44 222222222222 , 222222222222 , 1.000 IND: 45 222222222222 , 112221112112 , 0.999 IND: 46 222222222222 , 112222222222 , 1.000 IND: 47 112221111121 , 112221111121 , 1.000 IND: 48 222222222222 , 222222222222 , 1.000 IND: 49 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 50 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 51 222222222222 , 221122222222 , 1.000 IND: 52 222222222222 , 112221111121 , 0.793 222221111121 , 112222222222 , 0.205 IND: 53 222222222222 , 222222222222 , 1.000 IND: 54 222222222222 , 222221111121 , 1.000 IND: 55 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 56 222222222222 , 112221112222 , 0.999 IND: 57 221222222221 , 112221111112 , 0.999 IND: 58 222221111122 , 112221111122 , 1.000 IND: 59 222221122222 , 112221112222 , 1.000 IND: 60 222222222222 , 112221112112 , 0.999 IND: 61 222222222222 , 222222222222 , 1.000 IND: 62 222222222222 , 222212222222 , 1.000 IND: 63 222222222222 , 222222222222 , 1.000 IND: 64 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 65 222222222222 , 222222222222 , 1.000 IND: 66 222221111121 , 221222222221 , 1.000 IND: 67 222222222222 , 112222222222 , 1.000 IND: 68 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 69 222222222222 , 222222222222 , 1.000 IND: 70 112221111121 , 112221111112 , 0.998 IND: 71 222222222222 , 221222222221 , 1.000 IND: 72 222222222222 , 222212222222 , 1.000 IND: 73 222222222222 , 222222222222 , 1.000 IND: 74 222222222222 , 222222222222 , 1.000 IND: 75 222212222222 , 222212222222 , 1.000 IND: 76 222221111121 , 222221111112 , 0.999 IND: 77 222222222222 , 222222222222 , 1.000 IND: 78 222222222222 , 222222222222 , 1.000 IND: 79 112221112112 , 112221111112 , 1.000 IND: 80 112221111122 , 112221111112 , 1.000 IND: 81 222222222222 , 221222222221 , 1.000 IND: 82 222222222222 , 221122222222 , 1.000 IND: 83 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 84 222221111121 , 112221112112 , 0.994 IND: 85 222222222222 , 112222222222 , 1.000 IND: 86 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 87 222222222222 , 221222222221 , 1.000 IND: 88 222222222222 , 222221111122 , 1.000 IND: 89 222222222222 , 221122222222 , 1.000 IND: 90 222222222222 , 222222222222 , 1.000 IND: 91 112222222222 , 112221111122 , 1.000 IND: 92 112221111112 , 112221111112 , 1.000 IND: 93 222221111121 , 111122222222 , 0.016 221122222222 , 112221111121 , 0.980 IND: 94 222222222222 , 112222222222 , 1.000 IND: 95 222222222222 , 112221111121 , 0.792 222221111121 , 112222222222 , 0.206 IND: 96 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 97 222222222222 , 222222222222 , 1.000 IND: 98 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 99 222222222222 , 112221111122 , 0.953 222221111122 , 112222222222 , 0.047 IND: 100 222222222222 , 222222222222 , 1.000 IND: 101 222222222222 , 222222222222 , 1.000 IND: 102 222222222222 , 221122222222 , 1.000 IND: 103 222222222222 , 222222222222 , 1.000 IND: 104 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 105 222222222222 , 222222222222 , 1.000 IND: 106 222222222222 , 222221111121 , 1.000 IND: 107 222222222222 , 112221111122 , 0.953 222221111122 , 112222222222 , 0.047 IND: 108 222222222222 , 222221111121 , 1.000 IND: 109 222222222222 , 222222222222 , 1.000 IND: 110 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 111 222222222222 , 222221111121 , 1.000 IND: 112 222222222222 , 222221111112 , 0.999 IND: 113 222222222222 , 221122222222 , 1.000 IND: 114 222222222222 , 222222222222 , 1.000 IND: 115 222222222222 , 112222222222 , 1.000 IND: 116 222221111121 , 221122222222 , 0.995 IND: 117 222222222222 , 222222222222 , 1.000 IND: 118 222222222222 , 222222222222 , 1.000 IND: 119 222222222222 , 112221112222 , 0.999 IND: 120 222222222222 , 222221122222 , 1.000 IND: 121 222222222222 , 222222222222 , 1.000 IND: 122 222222222222 , 222222222222 , 1.000 IND: 123 222221111121 , 222221111121 , 1.000 IND: 124 222222222222 , 222221111112 , 0.999 IND: 125 222222222222 , 112222222222 , 1.000 IND: 126 222222222222 , 222222222222 , 1.000 IND: 127 112222222222 , 112221111122 , 1.000 IND: 128 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 129 222222222222 , 222221122222 , 1.000 IND: 130 222222222222 , 222222222222 , 1.000 IND: 131 222222222222 , 222212222222 , 1.000 IND: 132 222222222222 , 222222222222 , 1.000 IND: 133 222222222222 , 222222222222 , 1.000 IND: 134 222222222222 , 222222222222 , 1.000 IND: 135 222221111121 , 222221111121 , 1.000 IND: 136 222222222222 , 222222222222 , 1.000 IND: 137 222222222222 , 221122222222 , 1.000 IND: 138 222222222222 , 222221111121 , 1.000 IND: 139 222222222222 , 112221111121 , 0.790 222221111121 , 112222222222 , 0.209 IND: 140 222222222222 , 222221111122 , 1.000 IND: 141 222222222222 , 222222222222 , 1.000 IND: 142 222222222222 , 222221122222 , 1.000 IND: 143 222222222222 , 222222222222 , 1.000 IND: 144 222222222222 , 221222222221 , 1.000 IND: 145 222222222222 , 221222222221 , 1.000 IND: 146 222222222222 , 222222222222 , 1.000 IND: 147 222222222222 , 222212222222 , 1.000 IND: 148 222222222222 , 222221111121 , 1.000 IND: 149 222222222222 , 112221112222 , 0.999 IND: 150 222222222222 , 222222222222 , 1.000 IND: 151 222222222222 , 222212222222 , 1.000 IND: 152 222222222222 , 112221111122 , 0.953 222221111122 , 112222222222 , 0.047 IND: 153 222221111112 , 221222222221 , 0.998 IND: 154 222222222222 , 222222222222 , 1.000 IND: 155 222222222222 , 222222222222 , 1.000 IND: 156 222222222222 , 112222222222 , 1.000 IND: 157 222222222222 , 222222222222 , 1.000 IND: 158 222222222222 , 112221112112 , 0.999 IND: 159 222222222222 , 222221111112 , 0.999 IND: 160 222222222222 , 222222222222 , 1.000 IND: 161 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 162 222222222222 , 222222222222 , 1.000 IND: 163 222222222222 , 221222222221 , 1.000 IND: 164 222222222222 , 221222222221 , 1.000 IND: 165 222222222222 , 112222222222 , 1.000 IND: 166 222222222222 , 222222222222 , 1.000 IND: 167 222222222222 , 221122222222 , 1.000 IND: 168 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 169 222222222222 , 222221111121 , 1.000 IND: 170 222222222222 , 222222222222 , 1.000 IND: 171 112222222222 , 112221111122 , 1.000 IND: 172 222222222222 , 222221122222 , 1.000 IND: 173 222222222222 , 222222222222 , 1.000 IND: 174 222222222222 , 221222222221 , 1.000 IND: 175 222222222222 , 222222222222 , 1.000 IND: 176 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 177 222222222222 , 222222222222 , 1.000 IND: 178 222222222222 , 222222222222 , 1.000 IND: 179 222222222222 , 222222222222 , 1.000 IND: 180 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 181 222222222222 , 222212222222 , 1.000 IND: 182 222222222222 , 222222222222 , 1.000 IND: 183 222222222222 , 222221111121 , 1.000 IND: 184 112221111112 , 112221111112 , 1.000 IND: 185 222222222222 , 221222222221 , 1.000 IND: 186 222222222222 , 112212222222 , 0.044 222212222222 , 112222222222 , 0.956 IND: 187 222222222222 , 222222222222 , 1.000 IND: 188 222222222222 , 112221112112 , 0.999 IND: 189 222221111121 , 112221111112 , 0.930 222221111112 , 112221111121 , 0.069 IND: 190 221122222222 , 112221111112 , 0.998 IND: 191 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 192 222222222222 , 222222222222 , 1.000 IND: 193 222222222222 , 222222222222 , 1.000 IND: 194 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 195 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 196 222222222222 , 112222222222 , 1.000 IND: 197 222222222222 , 112222222222 , 1.000 IND: 198 112221111121 , 112221111112 , 0.998 IND: 199 222222222222 , 222222222222 , 1.000 IND: 200 222222222222 , 222222222222 , 1.000 altree-v1.3.1/test/create_file/paup_file/caco.phase.out_recom0000644000175000017500000002452212043315246024430 0ustar vdanjeanvdanjean293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760 0.000393544 5.9584 2.78669 0.478486 0.907596 0.158427 0.431209 0.788454 13.8816 2.06328 0.680348 0.251305 0.000842323 1.08612 7.74698 0.474669 0.727604 0.239732 0.373648 1.38996 8.19752 1.53227 0.437247 0.481374 0.000501811 0.63859 6.14959 0.776848 0.914494 0.212711 0.680679 1.28448 2.76135 2.25261 0.782005 0.762761 0.000501811 0.35663 8.50227 0.647782 0.964044 1.12601 1.25164 1.10936 1.90244 3.6517 0.504571 0.774254 0.000501811 0.686356 2.59719 0.821315 4.54061 0.927993 1.3787 1.88739 2.37621 6.69966 3.14301 0.712516 0.000396019 0.609389 1.12981 0.793391 3.92241 0.667248 0.404491 5.32804 4.75679 5.29492 3.00877 0.714 0.000396019 1.01892 0.354522 1.20873 3.53214 0.741759 1.35392 1.87064 2.36135 2.87143 1.26124 1.71964 0.000913344 1.01892 0.354522 1.20873 3.53214 0.741759 1.35392 1.87064 2.36135 2.87143 1.26124 1.71964 0.000913344 0.55879 0.285401 1.87581 2.01506 0.50696 2.63465 0.548832 1.36601 1.09042 0.443662 1.04189 0.0015277 0.212784 0.383514 2.17963 2.02966 0.602139 1.74228 1.00479 0.793666 0.670155 0.674405 1.10535 0.00172172 0.159812 0.776429 0.724332 2.37289 1.69288 2.05219 0.620925 1.12593 0.89822 0.126828 0.93602 0.00172172 0.255633 2.52472 0.323786 0.670771 1.01491 0.93974 0.785882 1.29485 0.444514 0.294244 0.796798 0.000827408 0.255633 2.52472 0.323786 0.670771 1.01491 0.93974 0.785882 1.29485 0.444514 0.294244 0.796798 0.000893151 0.255633 2.52472 0.323786 0.670771 1.01491 0.93974 0.785882 1.29485 0.444514 0.294244 0.796798 0.000893151 0.263042 3.60246 0.707909 1.6794 0.399298 0.487905 2.46552 1.63285 0.481498 0.573436 0.894465 0.000893151 0.628483 2.22971 0.419829 4.70987 0.339169 0.164367 2.11849 2.84196 0.337126 1.20103 1.52597 0.000619779 1.96986 3.78823 0.381201 1.3402 0.901981 0.110315 10.7129 0.970935 0.167448 1.17331 2.17489 0.000619779 1.02913 2.60199 0.470211 2.17014 0.757432 0.0819351 3.31205 1.57794 0.653834 1.95803 3.05827 0.000579136 0.437032 4.74419 0.318081 2.40608 1.79029 0.125117 2.40972 1.40938 1.53931 1.70629 8.114 0.000493112 0.437032 4.74419 0.318081 2.40608 1.79029 0.125117 2.40972 1.40938 1.53931 1.70629 8.114 0.000493112 0.437032 4.74419 0.318081 2.40608 1.79029 0.125117 2.40972 1.40938 1.53931 1.70629 8.114 0.000556703 0.205758 3.26153 0.166431 2.7438 1.83267 0.0717762 4.11834 2.23163 1.59649 1.55087 23.4534 0.000556703 0.967693 3.2332 0.270524 3.51909 0.927165 0.0706149 6.09127 4.46106 1.2243 1.24533 8.94261 0.00046314 0.858345 5.21641 1.22155 10.3817 0.689881 0.0348355 3.33685 2.61933 0.26534 1.55307 2.28225 0.000299332 0.858345 5.21641 1.22155 10.3817 0.689881 0.0348355 3.33685 2.61933 0.26534 1.55307 2.28225 0.000256893 1.12621 2.65456 1.4211 12.0118 1.47357 0.0931941 1.93862 1.07823 0.132265 0.57923 0.820739 0.000682131 0.904678 1.31413 0.647389 2.38102 1.60222 0.0695488 2.39623 2.0952 0.299529 0.633664 0.390174 0.000506873 1.68088 1.63226 0.233432 0.837155 1.36457 0.402704 5.3887 2.73777 0.332061 0.710795 0.498783 0.000994281 0.690701 5.99665 0.42252 0.377934 0.563832 0.863182 1.26285 2.3585 0.148397 0.276137 0.629108 0.00071791 0.610459 9.4824 0.387895 0.492498 0.748158 0.350406 3.77555 0.650523 0.0832566 0.660904 1.29876 0.000751561 1.05574 3.53967 1.92913 0.663982 0.367085 0.553336 1.15397 0.831754 0.118419 0.805286 0.335954 0.000757216 0.507496 2.50378 1.37262 0.277072 0.12487 0.492137 0.992083 2.24816 0.141455 1.09332 0.649853 0.00144192 0.507496 2.50378 1.37262 0.277072 0.12487 0.492137 0.992083 2.24816 0.141455 1.09332 0.649853 0.00144192 0.507496 2.50378 1.37262 0.277072 0.12487 0.492137 0.992083 2.24816 0.141455 1.09332 0.649853 0.00144192 0.767595 2.6833 0.673001 0.123868 0.31185 0.183895 0.447101 1.22549 0.125028 1.7495 0.439553 0.00144192 0.73171 3.14024 0.364529 1.07809 0.145666 0.537411 1.54528 3.72108 0.135661 0.593142 0.162865 0.0011741 1.31497 2.90026 0.423836 0.956265 0.129051 0.228587 0.975658 2.69 0.103604 0.397242 0.408239 0.0011018 0.843377 1.06037 1.33429 0.328627 0.172458 0.298123 1.97036 6.32333 0.0840604 0.867668 1.71433 0.00188551 0.843377 1.06037 1.33429 0.328627 0.172458 0.298123 1.97036 6.32333 0.0840604 0.867668 1.71433 0.00188551 0.843377 1.06037 1.33429 0.328627 0.172458 0.298123 1.97036 6.32333 0.0840604 0.867668 1.71433 0.00228349 0.544733 2.03465 0.385509 0.419972 0.81303 0.324088 2.51971 5.07115 0.302963 0.386811 0.29537 0.00132019 0.544733 2.03465 0.385509 0.419972 0.81303 0.324088 2.51971 5.07115 0.302963 0.386811 0.29537 0.000859738 0.544733 2.03465 0.385509 0.419972 0.81303 0.324088 2.51971 5.07115 0.302963 0.386811 0.29537 0.000859738 0.577999 7.16535 0.385263 1.60087 0.482222 0.171995 2.59068 12.0276 0.377708 0.100748 0.244712 0.000267063 0.697694 8.0023 0.902351 1.74028 0.475204 0.209502 7.75016 9.11962 1.88054 0.294206 0.522119 0.000252571 0.777215 4.56699 1.70631 0.947164 0.369479 0.354722 7.40219 27.0101 2.99285 0.304155 1.57146 0.000103749 1.35947 12.3759 1.36378 1.00808 1.14485 0.538304 2.19587 36.5218 3.07189 1.174 4.49054 0.000628479 0.688601 3.54671 2.85515 1.04413 0.689995 0.520923 2.09665 15.7393 1.97669 0.465015 2.77933 0.000409634 0.384245 2.15014 1.4627 0.894328 0.385081 0.6711 1.34657 12.7344 1.7203 0.506701 0.444575 0.000763361 0.616874 3.07039 0.918025 0.361446 0.913791 0.492172 1.59125 7.35629 1.13232 0.125114 1.07445 0.000644813 1.64041 5.75504 0.992744 0.578422 1.04756 0.508682 2.31144 6.63557 0.723735 0.369314 0.539037 0.000655114 1.64041 5.75504 0.992744 0.578422 1.04756 0.508682 2.31144 6.63557 0.723735 0.369314 0.539037 0.000655114 0.532735 4.45448 0.278809 0.950375 3.5983 1.05751 4.14759 3.67538 1.24414 1.44933 0.482119 0.000408163 1.51914 6.31296 0.311119 0.533448 6.49628 3.79084 3.06401 5.98743 3.71607 1.43767 0.298164 0.000408163 0.546431 4.15327 0.169109 1.8052 1.61026 1.30777 9.01325 3.01198 0.624283 0.695788 0.343475 0.000482584 0.546431 4.15327 0.169109 1.8052 1.61026 1.30777 9.01325 3.01198 0.624283 0.695788 0.343475 0.000492712 0.150016 4.20697 0.154941 2.03509 2.48652 2.9537 4.17654 3.9858 0.313526 0.3567 0.448938 0.00104376 0.164929 4.44581 0.16806 1.90766 2.80991 2.71451 0.779617 9.90555 0.185808 1.29391 0.774224 0.000921771 0.173033 1.67379 0.406793 1.12893 2.4188 2.66242 3.21667 5.15603 0.490716 0.502179 8.68997 0.000744675 0.113874 3.72866 0.965066 2.82437 1.88532 3.47211 6.23989 2.13207 0.667858 0.16731 3.10385 0.000708798 0.459591 2.41596 1.1741 2.63217 3.77093 14.2416 4.4189 2.41986 0.752112 0.223213 0.710983 0.000370101 1.14965 8.47595 0.429888 6.59756 1.32764 5.23542 3.51894 2.42752 0.988876 1.38453 1.44539 0.000202928 0.810258 22.0796 0.222888 10.5268 0.408837 2.69115 1.18015 0.292964 1.13989 0.61598 0.822454 0.000202928 1.27261 2.3716 1.00372 6.09695 1.19042 2.06562 2.23196 0.774424 1.3878 0.528261 4.49754 0.000623611 1.20713 3.18335 1.45189 6.42081 0.304712 0.463984 2.14754 1.73793 0.547199 0.779745 2.52063 0.000623611 1.20713 3.18335 1.45189 6.42081 0.304712 0.463984 2.14754 1.73793 0.547199 0.779745 2.52063 0.000623611 0.441788 3.69336 2.71974 2.5619 0.338974 0.445481 2.17073 0.447888 0.350851 0.426347 2.40122 0.000398511 1.2016 2.61458 5.25041 4.52563 2.80915 0.175812 4.28717 0.896315 0.691304 0.965578 2.40004 0.000398511 0.850091 5.75161 3.07562 1.39333 2.34886 0.283995 7.81433 0.706485 0.521203 0.805188 1.95562 0.000574314 0.850091 5.75161 3.07562 1.39333 2.34886 0.283995 7.81433 0.706485 0.521203 0.805188 1.95562 0.000574314 0.949821 12.2918 2.10568 1.2036 1.46687 0.181435 1.93669 0.996414 0.286215 0.373217 1.10946 0.000574314 0.59557 6.57884 5.46132 1.06696 0.856059 0.13611 1.1837 2.55758 0.238076 1.49261 0.803682 0.000388315 0.813744 12.2097 3.37485 3.10051 1.63998 0.171107 2.36551 10.409 0.18225 1.42194 0.637549 0.000388315 0.937362 2.07701 1.94727 5.32289 0.867615 0.302658 4.61473 21.5677 0.132355 1.71254 0.957763 0.000443264 0.542432 1.52006 1.74095 11.7113 1.31718 0.510762 4.97927 13.5078 0.755393 1.88324 0.999278 0.000443264 0.374565 1.18049 2.04795 6.1762 0.840161 0.531692 2.20385 37.304 0.774564 6.75428 0.958776 0.000443264 0.329483 1.58026 2.24534 4.27244 0.410483 0.648674 2.28327 57.8324 0.800175 3.25358 1.10229 0.000370709 0.704408 1.10358 1.74587 11.0683 0.150022 1.12998 4.41563 28.4381 0.874559 6.17282 1.37797 0.000492933 0.983631 3.23438 5.13202 8.45855 0.484695 0.620607 3.12965 22.4364 1.03345 1.84397 0.881356 0.000157606 1.22074 11.7435 2.61503 3.31152 0.225625 0.995412 4.935 6.79874 1.73535 2.10761 0.834729 0.000406557 0.761067 6.99674 1.16149 4.03154 0.192392 0.539269 2.65324 4.02536 0.954411 0.929972 1.65554 0.000406557 2.00378 7.24102 0.795962 12.4883 0.314985 0.703411 1.84454 7.84488 1.7019 0.518936 0.460079 0.000170653 1.69248 4.78386 0.519634 6.24708 0.0812359 0.534058 1.97235 3.35377 0.831196 0.264399 0.228781 0.000213689 1.69248 4.78386 0.519634 6.24708 0.0812359 0.534058 1.97235 3.35377 0.831196 0.264399 0.228781 0.000447429 0.971073 1.84156 1.42048 6.82482 0.131073 0.9533 0.642353 2.01859 0.584758 0.379496 0.112628 0.000720377 2.3193 2.03893 1.08889 9.09212 0.183816 0.666393 0.871415 1.18396 0.956273 0.162195 0.134702 0.000387185 2.3193 2.03893 1.08889 9.09212 0.183816 0.666393 0.871415 1.18396 0.956273 0.162195 0.134702 0.000192591 2.10795 5.46576 2.78584 16.2581 0.630966 0.618288 1.65547 1.61205 5.85926 0.366595 0.149156 0.000312601 0.936756 4.58622 0.6424 4.49982 1.63617 0.228948 2.8828 5.78363 1.38357 0.47729 0.302353 0.000354182 1.1666 1.32848 1.32603 2.53522 2.41363 0.261496 3.04003 4.00776 1.20925 0.341897 1.80799 0.00125954 0.55311 1.27387 0.282124 1.08977 2.34851 0.291991 3.71516 3.41684 0.735741 0.882259 2.87549 0.000416418 0.55311 1.27387 0.282124 1.08977 2.34851 0.291991 3.71516 3.41684 0.735741 0.882259 2.87549 0.00079303 0.884978 1.21613 0.197333 0.945915 2.60808 1.07709 1.40486 2.35847 1.07769 0.738796 1.30497 0.00079303 0.898302 3.5575 0.166039 0.929205 0.71007 4.78685 0.670292 1.79181 1.12095 0.759846 1.04495 0.000956429 0.184011 3.67472 0.112583 0.0907919 0.877149 2.20834 0.121293 0.368791 0.370334 0.549633 1.08698 0.00117186 1.23755 1.58815 0.131135 0.043515 1.08794 0.670353 0.330936 0.450556 0.33746 0.44397 1.48593 0.00177964 0.742412 6.41323 0.0618267 0.117384 0.377021 1.72284 0.641983 0.439912 0.495258 0.74687 2.73297 0.00177964 0.347945 3.99902 0.0831539 0.198085 0.694899 1.21558 0.958362 1.89391 1.58313 0.567526 1.33721 0.000614328 0.256175 2.84897 0.706956 0.114828 0.363835 2.90409 0.658347 2.37268 8.70424 2.36469 3.25852 0.000905162 0.269834 0.897171 0.941207 0.0696426 0.417761 4.21433 0.924518 6.77901 3.48419 3.16389 0.951384 altree-v1.3.1/test/create_file/paup_file/caco.phase.out_freqs0000644000175000017500000000360012043315246024435 0ustar vdanjeanvdanjean index haplotype E(freq) S.E E[Freq(0)] S.E.(0) E[Freq(1)] S.E.(1) 1 222222222222 0.555115 0.004229 0.627410 0.004332 0.482823 0.006273 2 222222222212 0.000025 0.000249 0.000050 0.000499 0.000000 0.000035 3 222221122222 0.015025 0.000248 0.020050 0.000495 0.010000 0.000016 4 222221112112 0.000048 0.000342 0.000044 0.000468 0.000050 0.000500 5 222221111122 0.015246 0.002172 0.006150 0.002782 0.024345 0.003072 6 222221111121 0.052410 0.002982 0.065479 0.002162 0.039336 0.005284 7 222221111112 0.014906 0.002744 0.021017 0.002393 0.008794 0.004801 8 222212222222 0.029875 0.000545 0.024750 0.001089 0.035000 0.000022 9 221222222221 0.035000 0.000009 0.035000 0.000021 0.035000 0.000017 10 221122222222 0.027300 0.000712 0.030000 0.000043 0.024601 0.001445 11 112222222222 0.054835 0.004194 0.047490 0.004155 0.062177 0.006272 12 112221112222 0.015000 0.000014 0.010000 0.000027 0.020000 0.000029 13 112221112112 0.027452 0.000342 0.009956 0.000468 0.044950 0.000500 14 112221111122 0.034853 0.002226 0.028950 0.002820 0.040755 0.003133 15 112221111121 0.022491 0.003126 0.009421 0.002138 0.035564 0.005464 16 112221111112 0.100019 0.002729 0.063883 0.002348 0.136156 0.004803 17 112221111111 0.000050 0.000477 0.000050 0.000496 0.000050 0.000496 18 112212222222 0.000125 0.000545 0.000250 0.001089 0.000000 0.000020 19 111122222222 0.000175 0.000673 0.000000 0.000021 0.000349 0.001370 altree-v1.3.1/test/paup/0000755000175000017500000000000012252703410015234 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/ancestor_absent/0000755000175000017500000000000012252703410020406 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/ancestor_absent/localisation/0000755000175000017500000000000012252703410023067 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/ancestor_absent/localisation/test.res.log0000644000175000017500000165516112043315246025364 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Fri Jan 13 11:11:19 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "anc" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 19 20 0 0 0 17 19 2 2 2 16 17 3 3 3 15 16 3 3 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H013 (6) 17 0 0 0 H001 (7) 19 2 2 2 18 19 1 1 1 H003 (8) 18 1 1 1 H005 (9) 18 1 1 1 H010 (2) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 +---------14 /--------15 \---------- H014 | | | +--------------------- H009 | | | \--------------------- H006 /---------16 | +------------------------------- H007 | | | +------------------------------- H012 /--------17 | | | \------------------------------- H011 | | | \------------------------------------------ H013 /---------19 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------20 \----------------------------------------18 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_17 --> node_16 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_19 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 3 1 1.000 2 ==> 1 node_18 --> H003 4 1 1.000 2 ==> 1 node_18 --> H005 12 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 4 16 17 2 1 2 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 3 H001 (7) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | +------14-------- H012 /------15 | | | \-------- H011 | | | +---------------- H009 /------16 | | | \---------------- H006 | | /-------17 \------------------------ H008 | | /------18 \-------------------------------- H014 | | /------19 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------21 | | /-------- H003 | \-----------------------------------------------20 -------22 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H014 (5) 14 1 1 2 H006 (12) 15 1 0 1 H009 (11) 16 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------------- H002 | | /--------- H008 | /-------14 /--------16 | \--------- H014 | +-------15 | | \------------------ H006 | | | \--------------------------- H009 /-------17 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------18 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 /-------20 | +------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 --> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 16 1 0 1 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------14 | \--------- H009 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 16 1 0 1 H012 (10) 18 1 0 1 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /--------------14 | \-------- H009 | /------17 /-------- H008 | | /------15 | | | \-------- H014 /-------18 \------16 | | \---------------- H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 3 16 18 3 3 3 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 15 16 0 0 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 17 18 1 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------14---------- H009 | | | \---------- H006 /--------16 | | /---------- H008 | \---------15 | \---------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 /---------21 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------22 \----------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 2 2 2 15 17 3 3 3 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 16 17 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------14---------- H009 | | | \---------- H006 /--------15 | +--------------------- H008 | | | \--------------------- H014 /---------17 | | /---------- H007 | | | | \-------------------16---------- H012 /--------18 | | | \---------- H011 | | | \------------------------------------------ H013 /---------20 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_17 --> node_16 9 1 0.500 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 3 16 17 2 0 3 15 16 1 1 1 14 15 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 15 1 0 1 H008 (4) 16 1 0 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------14 | \-------- H009 /------15 | \---------------- H006 /------16 | \------------------------ H008 /-------17 | \-------------------------------- H014 | /------19 /-------- H007 | | | | \-------------------------------18-------- H012 /------20 | | | \-------- H011 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 --> 1 node_16 --> H008 11 1 0.333 2 --> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H014 (5) 14 1 1 2 H006 (12) 15 1 0 1 H009 (11) 17 1 0 1 H007 (3) 18 1 0 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------------- H002 | | /------- H008 /-----16 /------14 | | | \------- H014 | \-----15 /-----17 \--------------- H006 | | /------18 \----------------------------- H009 | | | \------------------------------------ H007 /-----19 | +-------------------------------------------- H012 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 --> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H006 (12) 14 0 0 1 H014 (5) 15 2 1 2 H009 (11) 16 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------------- H002 | | /--------- H008 | /-------14 /--------16 | \--------- H006 | +-------15 | | \------------------ H014 | | | \--------------------------- H009 /-------17 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------18 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 /-------20 | +------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 --> 2 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 17 1 0 1 H012 (10) 18 1 0 1 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------14 | \-------- H009 /------16 | | /-------- H008 | \------15 /------17 \-------- H014 | | /-------18 \------------------------ H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 19 20 0 0 0 17 19 2 2 2 16 17 3 3 3 15 16 3 3 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H014 (5) 15 2 2 2 H009 (11) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H013 (6) 17 0 0 0 H001 (7) 19 2 2 2 18 19 1 1 1 H003 (8) 18 1 1 1 H005 (9) 18 1 1 1 H010 (2) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 +---------14 /--------15 \---------- H006 | | | +--------------------- H014 | | | \--------------------- H009 /---------16 | +------------------------------- H007 | | | +------------------------------- H012 /--------17 | | | \------------------------------- H011 | | | \------------------------------------------ H013 /---------19 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------20 \----------------------------------------18 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_17 --> node_16 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_19 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 3 1 1.000 2 ==> 1 node_18 --> H003 4 1 1.000 2 ==> 1 node_18 --> H005 12 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 3 17 18 3 1 4 16 17 2 1 2 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 2 H013 (6) 19 2 0 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | +------14-------- H012 /------15 | | | \-------- H011 | | | +---------------- H009 /------16 | | | \---------------- H006 | | /-------17 \------------------------ H008 | | /------18 \-------------------------------- H014 | | /------19 \----------------------------------------- H001 | | | \------------------------------------------------- H013 /------21 | | /-------- H003 | \-----------------------------------------------20 -------22 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 2 1 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------- H002 | | /------- H007 | | /-----15------14------- H012 | | | | | \------- H011 /-----16 | | | \--------------- H009 | | /-----17 \---------------------- H006 | | /------18 \----------------------------- H008 | | /-----19 \------------------------------------ H014 | | /-----20 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 4 16 17 2 2 3 H002 (1) 16 0 0 0 14 16 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 15 16 2 1 2 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 2 1 2 H014 (5) 17 0 0 0 H013 (6) 18 0 0 3 H001 (7) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 | | /-------16 \--------- H011 | | | | /--------- H008 | +-------15 /--------17 | \--------- H006 | | | | | \------------------ H009 /-------18 | | | \--------------------------- H014 | | /-------19 \------------------------------------- H013 | | | \---------------------------------------------- H001 /-------21 | | /--------- H003 | \--------------------------------------------20 --------22 \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 1 1 3 17 18 2 2 2 15 17 3 1 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 16 17 0 0 2 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H014 (5) 18 2 0 2 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H006 | | | \---------------- H009 /------17 | | /-------- H007 | | | | \--------------16-------- H012 /-------18 | | | \-------- H011 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 1 1 1 16 17 2 2 2 15 16 3 3 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H014 (5) 17 2 2 2 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | | \------------------ H009 | /--------16--------------------------- H007 | | | +--------------------------- H012 /-------17 | | | \--------------------------- H011 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 /------16 | | | \---------------- H009 | | /-------17 \------------------------ H006 | | /------18 \-------------------------------- H008 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | /------21--------------------------------------------------------- H013 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 1 1 3 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 15 2 1 2 16 17 2 1 2 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 | | /------17 \---------------- H009 | | | | /-------- H008 /-------18 \--------------16 | | \-------- H006 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 2 1 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------- H002 | | /------- H007 | | /-----15------14------- H012 | | | | | \------- H011 /-----16 | | | \--------------- H009 | | /-----17 \---------------------- H006 | | /------18 \----------------------------- H008 | | /-----19 \------------------------------------ H014 | | /-----20 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 14 15 0 0 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 2 0 2 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------- H007 | /----14 | | \------- H011 /----17 /-----15 | | | \------------- H012 | +-----16 | | \-------------------- H006 /-----18 | | | \--------------------------- H009 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 2 1 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 /------16 | | | \---------------- H009 | | /-------17 \------------------------ H006 | | /------18 \-------------------------------- H008 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-----------14 | \------- H009 | /-----17 /------- H007 | | /----15 | | | \------- H011 /----18 \-----16 | | \------------- H012 | | /-----19 \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /------------------14 | \------- H009 | | /------- H007 /----18 /----15 | | | \------- H011 | | /-----16 | | | \------------- H012 /-----19 \-----17 | | \-------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------14 | \------- H009 | | /------- H007 | /------15 /-----17 | \------- H011 | +-----16 | | \--------------- H012 /-----18 | | | \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 /----17 | | | /----15 /------ H012 | | | \----14 | \----16 \------ H011 /----18 | | | \------------------ H009 | | /-----19 \------------------------------ H006 | | /----20 \------------------------------------ H008 | | /----21 \------------------------------------------- H014 | | /----22 \------------------------------------------------- H013 | | | \------------------------------------------------------- H001 /----24 | | /------ H003 | \-----------------------------------------------------23 -----25 \------ H005 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H006 (12) 15 1 1 1 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H014 | | /------16 \---------------- H006 | | /-------17 \------------------------ H009 | | | \-------------------------------- H007 /------18 | +----------------------------------------- H012 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H014 (5) 15 2 2 2 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H006 | | /------16 \---------------- H014 | | /-------17 \------------------------ H009 | | | \-------------------------------- H007 /------18 | +----------------------------------------- H012 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H006 (12) 14 0 0 1 H014 (5) 15 2 1 2 H009 (11) 17 1 0 1 H007 (3) 18 1 0 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------------- H002 | | /------- H008 /-----16 /------14 | | | \------- H006 | \-----15 /-----17 \--------------- H014 | | /------18 \----------------------------- H009 | | | \------------------------------------ H007 /-----19 | +-------------------------------------------- H012 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 --> 2 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----18 | | | \-------------------- H009 | | /----19 \--------------------------------- H006 | | /-----20 \---------------------------------------- H008 | | /-----21 \---------------------------------------------- H014 | | | \----------------------------------------------------- H013 | /----23------------------------------------------------------------ H001 | | | | /------- H003 ------24 \---------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----18 | | | \-------------------- H009 | | /----19 \--------------------------------- H006 | | /-----20 \---------------------------------------- H008 | | /-----21 \---------------------------------------------- H014 | | | \----------------------------------------------------- H001 | /----23------------------------------------------------------------ H013 | | | | /------- H003 ------24 \---------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 3 3 3 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------- H002 | /-----15 /------- H008 | \------14 /-----16 \------- H006 | | /-----17 \---------------------- H009 | | | \----------------------------- H007 /------18 | +------------------------------------ H012 | | /-----19 \------------------------------------ H011 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 3 3 3 16 17 0 0 1 15 16 1 1 1 14 15 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H014 (5) 15 2 1 2 H008 (4) 16 1 0 1 H006 (12) 17 0 0 0 H012 (10) 18 0 0 0 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------- H002 /------14 | \------- H009 /-----15 | \--------------- H014 /-----16 | \---------------------- H008 /-----17 | \----------------------------- H006 /------18 | \------------------------------------ H012 | /-----19-------------------------------------------- H007 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> H008 9 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H014 | | /------16 \---------------- H009 | | /-------17 \------------------------ H006 | | | \-------------------------------- H012 /------18 | +----------------------------------------- H007 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------14 | \------- H009 | /-----17 /------- H007 | | /------15 | | | \------- H011 /-----18 \-----16 | | \--------------- H012 | | /------19 \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 14 16 0 0 1 H002 (1) 14 0 0 0 H014 (5) 14 2 2 2 H009 (11) 14 1 1 1 15 16 1 0 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 | /-------14--------- H014 | | | \--------- H009 /-------16 | | /--------- H008 | \-------15 /--------17 \--------- H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 --> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_17 --> H012 11 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 3 3 3 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 0 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------14 | \-------- H009 /------16 | | /-------- H008 | \------15 /------17 \-------- H006 | | | \------------------------ H012 /-------18 | +-------------------------------- H007 | | /------19 \-------------------------------- H011 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H012 11 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------14 | \------- H009 | /-----17 /------- H007 | | /------15 | | | \------- H011 /-----18 \-----16 | | \--------------- H012 | | /------19 \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 2 16 18 2 2 3 15 16 2 0 2 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 H008 (4) 15 1 1 1 H014 (5) 16 0 0 1 17 18 2 1 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 | /-------14--------- H009 | | /-------15 \--------- H006 | | /--------16 \------------------ H008 | | | \--------------------------- H014 /-------18 | | /--------- H007 | | | | \--------------------------17--------- H012 /-------19 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------21 | +------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_15 --> node_14 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 3 16 18 2 2 3 15 16 3 0 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 H014 (5) 16 0 0 2 17 18 2 0 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | /--------16 \------------------ H009 | | | \--------------------------- H014 /-------18 | | /--------- H007 | | | | \--------------------------17--------- H012 /-------19 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------21 | +------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 14 17 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 16 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /----------------14 | \--------- H009 | /--------17 /--------- H008 | | /-------15 | | | \--------- H006 | \-------16 /-------19 \------------------ H014 | | | | /--------- H007 | | | /-------20 \--------------------------18--------- H012 | | | | | \--------- H011 | | | \---------------------------------------------- H013 /-------22 | +------------------------------------------------------- H001 | | | | /--------- H003 --------23 \--------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 3 16 18 3 3 3 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 16 1 1 2 17 18 1 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------14 | \---------- H009 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 /---------21 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------22 \----------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 15 17 3 1 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 16 17 0 0 2 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H014 (5) 18 2 0 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | | \------------------ H009 /--------17 | | /--------- H007 | | | | \----------------16--------- H012 /-------18 | | | \--------- H011 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 1 1 1 15 16 3 3 3 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------14 | \-------- H009 | /------15---------------- H008 | | /------16 \---------------- H006 | | | \------------------------ H012 /-------17 | +-------------------------------- H007 | | /------18 \-------------------------------- H011 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 4 16 17 2 1 2 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 /-------15 | | | \--------- H011 | | | +------------------ H009 /--------16 | | | \------------------ H006 | | /-------17 \--------------------------- H008 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------14 | \-------- H009 | | /-------- H007 | /------15 /------17 | \-------- H011 | +------16 | | \---------------- H012 /-------18 | | | \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------14 | \------- H009 | | /------- H007 /-----18 /------15 | | | \------- H011 | | /-----16 | | | \--------------- H012 /------19 \-----17 | | \---------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 3 16 17 2 0 3 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------14 | \--------- H009 /-------16 | | /--------- H008 | \-------15 /--------17 \--------- H006 | | | \--------------------------- H014 /-------19 | | /--------- H007 | | | | \--------------------------18--------- H012 /-------20 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------22 | +------------------------------------------------------- H001 | | | | /--------- H003 --------23 \--------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 1 1 1 15 16 3 3 3 14 15 1 1 1 H002 (1) 14 0 0 0 H014 (5) 14 2 2 2 H009 (11) 14 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 | /-------14--------- H014 | | | \--------- H009 /-------15 | +------------------ H008 | | /--------16 \------------------ H006 | | | \--------------------------- H012 /-------17 | +------------------------------------- H007 | | /-------18 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 1 1 3 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 15 2 1 2 16 17 2 1 2 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------15-------14--------- H012 | | | | | \--------- H011 | | /--------17 \------------------ H009 | | | | /--------- H008 /-------18 \----------------16 | | \--------- H006 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 1 1 3 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 15 2 1 2 16 17 2 1 2 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------15-------14--------- H012 | | | | | \--------- H011 | | /--------17 \------------------ H009 | | | | /--------- H008 /-------18 \----------------16 | | \--------- H006 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H001 | /-------21------------------------------------------------------- H013 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------14 | \------- H009 | | /------- H007 /-----18 /------15 | | | \------- H011 | | /-----16 | | | \--------------- H012 /------19 \-----17 | | \---------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 1 1 3 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 15 2 1 2 16 17 2 1 2 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 | | /------17 \---------------- H009 | | | | /-------- H008 /-------18 \--------------16 | | \-------- H006 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H001 | | | \------------------------------------------------- H013 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 3 17 18 3 1 4 16 17 2 2 3 H002 (1) 16 0 0 0 14 16 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 15 16 2 1 2 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 2 1 2 H014 (5) 17 0 0 0 H001 (7) 18 0 0 2 H013 (6) 19 2 0 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 | | /-------16 \--------- H011 | | | | /--------- H008 | +-------15 /--------17 | \--------- H006 | | | | | \------------------ H009 /-------18 | | | \--------------------------- H014 | | /-------19 \------------------------------------- H001 | | | \---------------------------------------------- H013 /-------21 | | /--------- H003 | \--------------------------------------------20 --------22 \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 | | | /-----15 /------- H012 /----17 | \----14 | +-----16 \------- H011 | | | | | \-------------------- H009 /-----18 | | | \--------------------------- H006 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 14 15 0 0 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 2 0 2 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------- H007 | /----14 | | \------- H011 /----17 /-----15 | | | \------------- H012 | +-----16 | | \-------------------- H006 /-----18 | | | \--------------------------- H009 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 3 17 18 3 3 4 16 17 2 1 2 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 0 H013 (6) 20 2 2 3 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 /-------15 | | | \--------- H011 | | | +------------------ H009 /--------16 | | | \------------------ H006 | | /-------17 \--------------------------- H008 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H001 | /-------20------------------------------------------------------- H013 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 2 3 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 17 18 2 1 2 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 | | \------14 /-----18-----16 \------- H011 | | | | | \---------------------- H009 | | /------19 | /------- H008 | | \--------------------17 | | \------- H006 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 1 1 3 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 18 19 2 1 2 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----19 | | | \-------------------- H009 | | | | /------- H008 /----20 \------------------------18 | | \------- H006 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 2 3 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 17 18 2 1 2 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------15 /-------- H012 | | \------14 /-------18------16 \-------- H011 | | | | | \------------------------ H009 | | /------19 | /-------- H008 | | \----------------------17 | | \-------- H006 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------22 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 | | | /-----15 /------- H012 /----17 | \----14 | +-----16 \------- H011 | | | | | \-------------------- H009 /-----18 | | | \--------------------------- H006 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 2 3 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 3 14 15 0 0 1 H007 (3) 14 1 1 2 H011 (13) 14 1 0 1 H012 (10) 15 1 0 2 16 17 2 0 2 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 2 1 2 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----18 | \--------------- H012 | +-----17 | | | /------- H008 | | \-------------16 /------19 | \------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 3 2 3 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 3 14 15 1 1 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----17 | \--------------- H012 | | | | +-----16---------------------- H008 | | | /------18 | \---------------------- H006 | | | | | \----------------------------- H009 /-----19 | | | \------------------------------------ H014 | | /-----20 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 13 1 0.333 1 --> 0 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 2 3 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 17 18 2 1 2 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 | | \------14 /-----18-----16 \------- H011 | | | | | \---------------------- H009 | | /------19 | /------- H008 | | \--------------------17 | | \------- H006 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 2 3 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 17 18 2 1 2 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------15 /-------- H012 | | \------14 /-------18------16 \-------- H011 | | | | | \------------------------ H009 | | /------19 | /-------- H008 | | \----------------------17 | | \-------- H006 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 3 17 18 3 3 4 16 17 2 2 3 H002 (1) 16 0 0 0 14 16 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 15 16 2 1 2 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 2 1 2 H014 (5) 17 0 0 0 H001 (7) 18 0 0 0 H013 (6) 20 2 2 3 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------14---------- H012 | | /--------16 \---------- H011 | | | | /---------- H008 | +---------15 /---------17 | \---------- H006 | | | | | \--------------------- H009 /--------18 | | | \------------------------------- H014 | | | \------------------------------------------ H001 /---------20 | +---------------------------------------------------- H013 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 2 3 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 3 14 15 0 0 1 H007 (3) 14 1 1 2 H011 (13) 14 1 0 1 H012 (10) 15 1 0 2 16 17 2 0 2 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 2 1 2 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------18 | \---------------- H012 | +------17 | | | /-------- H008 | | \--------------16 /------19 | \-------- H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 1 0 1 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------14 | \------- H009 | | /------- H007 | /------15 /------19 | \------- H011 | | /-----16 | | | \--------------- H012 | | /-----17 /-----20 | | \---------------------- H006 | | \-----18 | | \----------------------------- H008 /-----21 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 /------23 | +---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 3 2 3 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 3 14 15 1 1 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------17 | \---------------- H012 | | | | +------16------------------------ H008 | | | /------18 | \------------------------ H006 | | | | | \-------------------------------- H009 /------19 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------21 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 13 1 0.333 1 --> 0 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 4 16 17 2 2 3 H002 (1) 16 0 0 0 14 16 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 15 16 2 1 2 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 2 1 2 H014 (5) 17 0 0 0 H013 (6) 18 0 0 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------14---------- H012 | | /--------16 \---------- H011 | | | | /---------- H008 | +---------15 /---------17 | \---------- H006 | | | | | \--------------------- H009 /--------18 | | | \------------------------------- H014 | | | \------------------------------------------ H013 /---------20 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 1 1 3 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 18 19 2 1 2 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----17 | | | /-----15 /------- H012 | | | \------14 | \-----16 \------- H011 /------19 | | | \---------------------- H009 | | | | /------- H008 /-----20 \---------------------------18 | | \------- H006 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------14 | \-------- H009 | | /-------- H007 | /------15 /------17 | \-------- H011 | +------16 | | \---------------- H012 /-------18 | | | \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | /------22--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 1 0 1 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /------------------------14 | \------- H009 | | /------- H007 | /----15 /-----19 | \------- H011 | | /-----16 | | | \------------- H012 | | /-----17 /----20 | | \-------------------- H006 | | \----18 | | \--------------------------- H008 /-----21 | | | \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 /----17 | | | /----15 /------ H012 | | | \----14 | \----16 \------ H011 /----18 | | | \------------------ H009 | | /-----19 \------------------------------ H006 | | /----20 \------------------------------------ H008 | | /----21 \------------------------------------------- H014 | | /----22 \------------------------------------------------- H001 | | | \------------------------------------------------------- H013 /----24 | | /------ H003 | \-----------------------------------------------------23 -----25 \------ H005 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-----------14 | \------- H009 | /-----17 /------- H007 | | /----15 | | | \------- H011 /----18 \-----16 | | \------------- H012 | | /-----19 \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /------------------14 | \------- H009 | | /------- H007 /----18 /----15 | | | \------- H011 | | /-----16 | | | \------------- H012 /-----19 \-----17 | | \-------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------14 | \------- H009 | | /------- H007 | /------15 /-----17 | \------- H011 | +-----16 | | \--------------- H012 /-----18 | | | \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 1 1 3 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 18 19 2 1 2 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----19 | | | \-------------------- H009 | | | | /------- H008 /----20 \------------------------18 | | \------- H006 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 /-----17 | \------14 | +-----16 \------- H011 | | | | | \---------------------- H009 /------18 | | | \----------------------------- H006 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 1 1 3 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 18 19 2 1 2 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----17 | | | /-----15 /------- H012 | | | \------14 | \-----16 \------- H011 /------19 | | | \---------------------- H009 | | | | /------- H008 /-----20 \---------------------------18 | | \------- H006 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 /-----17 | \------14 | +-----16 \------- H011 | | | | | \---------------------- H009 /------18 | | | \----------------------------- H006 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------22---------------------------------------------------------- H013 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 1 0 1 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------14 | \------- H009 | | /------- H007 | /------15 /------19 | \------- H011 | | /-----16 | | | \--------------- H012 | | /-----17 /-----20 | | \---------------------- H006 | | \-----18 | | \----------------------------- H008 /-----21 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 /------23 | +---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 14 15 0 0 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 2 0 2 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 /-----17 /-----15 | | | \--------------- H012 | +-----16 | | \---------------------- H006 /------18 | | | \----------------------------- H009 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 14 15 0 0 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 2 0 2 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 /-----17 /-----15 | | | \--------------- H012 | +-----16 | | \---------------------- H006 /------18 | | | \----------------------------- H009 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------22---------------------------------------------------------- H013 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 2 3 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 3 14 15 0 0 1 H007 (3) 14 1 1 2 H011 (13) 14 1 0 1 H012 (10) 15 1 0 2 16 17 2 0 2 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 2 1 2 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----18 | \--------------- H012 | +-----17 | | | /------- H008 | | \-------------16 /------19 | \------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 1 0 1 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /------------------------14 | \------- H009 | | /------- H007 | /----15 /-----19 | \------- H011 | | /-----16 | | | \------------- H012 | | /-----17 /----20 | | \-------------------- H006 | | \----18 | | \--------------------------- H008 /-----21 | | | \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 2 3 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 3 14 15 0 0 1 H007 (3) 14 1 1 2 H011 (13) 14 1 0 1 H012 (10) 15 1 0 2 16 17 2 0 2 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 2 1 2 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------18 | \---------------- H012 | +------17 | | | /-------- H008 | | \--------------16 /------19 | \-------- H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------22 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 3 2 3 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 3 14 15 1 1 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----17 | \--------------- H012 | | | | +-----16---------------------- H008 | | | /------18 | \---------------------- H006 | | | | | \----------------------------- H009 /-----19 | | | \------------------------------------ H014 | | /-----20 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 13 1 0.333 1 --> 0 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 3 2 3 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 3 14 15 1 1 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------17 | \---------------- H012 | | | | +------16------------------------ H008 | | | /------18 | \------------------------ H006 | | | | | \-------------------------------- H009 /------19 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------21 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 13 1 0.333 1 --> 0 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 altree-v1.3.1/test/paup/ancestor_absent/localisation/caco.loc0000644000175000017500000000237012043315246024501 0ustar vdanjeanvdanjeanLocalisation method using S-character Results: site number 10 sens 2-->1 V_i = 3.47439614486152 site number 9 sens 2-->1 V_i = 1.69733684958301 site number 12 sens 1-->2 V_i = 0.87287156094397 site number 3 sens 2-->1 V_i = -0.267261241912424 site number 4 sens 2-->1 V_i = -0.267261241912424 site number 8 sens 2-->1 V_i = -0.267261241912424 site number 5 sens 2-->1 V_i = -0.267261241912424 site number 3 sens 1-->2 V_i = -0.377964473009227 site number 6 sens 2-->1 V_i = -0.377964473009227 site number 4 sens 1-->2 V_i = -0.377964473009227 site number 8 sens 1-->2 V_i = -0.377964473009227 site number 10 sens 1-->2 V_i = -0.377964473009227 site number 7 sens 2-->1 V_i = -0.377964473009227 site number 5 sens 1-->2 V_i = -0.377964473009227 site number 1 sens 2-->1 V_i = -0.462910049886276 site number 1 sens 1-->2 V_i = -0.462910049886276 site number 11 sens 2-->1 V_i = -0.462910049886276 site number 11 sens 1-->2 V_i = -0.462910049886276 site number 9 sens 1-->2 V_i = -0.462910049886276 site number 2 sens 2-->1 V_i = -0.462910049886276 site number 12 sens 2-->1 V_i = -0.462910049886276 site number 2 sens 1-->2 V_i = -0.462910049886276 site number 7 sens 1-->2 V_i = -0.534522483824849 site number 6 sens 1-->2 V_i = -0.534522483824849 altree-v1.3.1/test/paup/ancestor_absent/localisation/test.tree0000644000175000017500000002465312043315246024745 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Fri Jan 13 11:11:19 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_absent/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 69978 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.09 sec) ] tree PAUP_1 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_2 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_3 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_4 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_5 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_6 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_7 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_8 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_9 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_10 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_11 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_13 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_14 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_16 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005)),H010); tree PAUP_17 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_19 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_20 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_21 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_22 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_23 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_24 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_25 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_26 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_27 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_28 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_29 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_30 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_32 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_33 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_34 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_35 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_36 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_37 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_38 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_40 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_41 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_42 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_43 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005)),H010); tree PAUP_44 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_45 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_46 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_47 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_48 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_49 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_50 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_51 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_52 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_53 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_54 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_55 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_56 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_57 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_58 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_59 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_60 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_61 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_63 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_64 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_65 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_66 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005)),H010); tree PAUP_67 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_68 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005)),H010); tree PAUP_69 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_70 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_71 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_72 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_73 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005)),H010); tree PAUP_74 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_75 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_76 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_77 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_78 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_79 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_80 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_81 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_82 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005)),H010); tree PAUP_83 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_84 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_85 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_86 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005)),H010); tree PAUP_87 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005)),H010); tree PAUP_88 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_89 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005)),H010); End; altree-v1.3.1/test/paup/ancestor_absent/localisation/et_caco.paup0000644000175000017500000000216212043315246025360 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=13 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 2222211222220 H001 112222222222? H003 221122222222? H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; ancstates *anc vector = 222222222222?; end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/ancestor_absent/localisation/caco.paup0000644000175000017500000000207412043315246024672 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=13 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; ancstates *anc vector = 222222222222; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/ancestor_absent/localisation/nb_cas_control.txt0000644000175000017500000000030312043315246026615 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/ancestor_absent/localisation/run-prog0000755000175000017500000000077712043315246024605 0ustar vdanjeanvdanjean#!/bin/sh -x # To add the character S # p=102 case haplotypes/176 haplotypes ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.58 # To run paup on the file containing the character S paup et_caco.paup # To perform the localisation test # All 89 equiparsimonious trees are analysed ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc altree-v1.3.1/test/paup/ancestor_absent/association/0000755000175000017500000000000012252703410022722 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/ancestor_absent/association/test.res.log0000644000175000017500000162234112043315246025211 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Wed Apr 23 21:53:16 2008 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "anc" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 19 20 0 0 0 17 19 2 2 2 16 17 3 3 3 15 16 2 2 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H013 (6) 17 0 0 0 H001 (7) 19 2 2 2 18 19 1 1 1 H003 (8) 18 1 1 1 H005 (9) 18 1 1 1 H010 (2) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 +---------14 /--------15 \---------- H014 | | | +--------------------- H009 | | | \--------------------- H006 /---------16 | +------------------------------- H007 | | | +------------------------------- H012 /--------17 | | | \------------------------------- H011 | | | \------------------------------------------ H013 /---------19 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------20 \----------------------------------------18 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_17 --> node_16 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 ==> 1 node_19 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 3 1 1.000 2 ==> 1 node_18 --> H003 4 1 1.000 2 ==> 1 node_18 --> H005 12 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 3 16 17 1 1 1 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 2 H001 (7) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | +------14-------- H012 /------15 | | | \-------- H011 | | | +---------------- H009 /------16 | | | \---------------- H006 | | /-------17 \------------------------ H008 | | /------18 \-------------------------------- H014 | | /------19 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------21 | | /-------- H003 | \-----------------------------------------------20 -------22 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H014 (5) 14 1 1 2 H006 (12) 15 1 0 1 H009 (11) 16 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /--------- H008 | /-------14 /--------16 | \--------- H014 | +-------15 | | \------------------ H006 | | | \--------------------------- H009 /-------17 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------18 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 /-------20 | +------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 --> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 16 1 0 1 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------14 | \--------- H009 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 16 1 0 1 H012 (10) 18 1 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------14 | \-------- H009 | /------17 /-------- H008 | | /------15 | | | \-------- H014 /-------18 \------16 | | \---------------- H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 3 16 18 2 2 2 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 15 16 0 0 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 17 18 1 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------14---------- H009 | | | \---------- H006 /--------16 | | /---------- H008 | \---------15 | \---------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 /---------21 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------22 \----------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 2 2 2 15 17 2 2 2 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 16 17 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------14---------- H009 | | | \---------- H006 /--------15 | +--------------------- H008 | | | \--------------------- H014 /---------17 | | /---------- H007 | | | | \-------------------16---------- H012 /--------18 | | | \---------- H011 | | | \------------------------------------------ H013 /---------20 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_17 --> node_16 9 1 0.500 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 2 16 17 1 0 2 15 16 1 1 1 14 15 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 15 1 0 1 H008 (4) 16 1 0 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------14 | \-------- H009 /------15 | \---------------- H006 /------16 | \------------------------ H008 /-------17 | \-------------------------------- H014 | /------19 /-------- H007 | | | | \-------------------------------18-------- H012 /------20 | | | \-------- H011 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 --> 1 node_16 --> H008 11 1 0.333 2 --> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H014 (5) 14 1 1 2 H006 (12) 15 1 0 1 H009 (11) 17 1 0 1 H007 (3) 18 1 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------------- H002 | | /------- H008 /-----16 /------14 | | | \------- H014 | \-----15 /-----17 \--------------- H006 | | /------18 \----------------------------- H009 | | | \------------------------------------ H007 /-----19 | +-------------------------------------------- H012 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 --> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H006 (12) 14 0 0 1 H014 (5) 15 2 1 2 H009 (11) 16 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /--------- H008 | /-------14 /--------16 | \--------- H006 | +-------15 | | \------------------ H014 | | | \--------------------------- H009 /-------17 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------18 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 /-------20 | +------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 --> 2 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 17 1 0 1 H012 (10) 18 1 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------14 | \-------- H009 /------16 | | /-------- H008 | \------15 /------17 \-------- H014 | | /-------18 \------------------------ H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 19 20 0 0 0 17 19 2 2 2 16 17 3 3 3 15 16 2 2 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H014 (5) 15 2 2 2 H009 (11) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H013 (6) 17 0 0 0 H001 (7) 19 2 2 2 18 19 1 1 1 H003 (8) 18 1 1 1 H005 (9) 18 1 1 1 H010 (2) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 +---------14 /--------15 \---------- H006 | | | +--------------------- H014 | | | \--------------------- H009 /---------16 | +------------------------------- H007 | | | +------------------------------- H012 /--------17 | | | \------------------------------- H011 | | | \------------------------------------------ H013 /---------19 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------20 \----------------------------------------18 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_17 --> node_16 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_19 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 3 1 1.000 2 ==> 1 node_18 --> H003 4 1 1.000 2 ==> 1 node_18 --> H005 12 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 3 16 17 1 1 1 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 2 H013 (6) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | +------14-------- H012 /------15 | | | \-------- H011 | | | +---------------- H009 /------16 | | | \---------------- H006 | | /-------17 \------------------------ H008 | | /------18 \-------------------------------- H014 | | /------19 \----------------------------------------- H001 | | | \------------------------------------------------- H013 /------21 | | /-------- H003 | \-----------------------------------------------20 -------22 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------- H002 | | /------- H007 | | /-----15------14------- H012 | | | | | \------- H011 /-----16 | | | \--------------- H009 | | /-----17 \---------------------- H006 | | /------18 \----------------------------- H008 | | /-----19 \------------------------------------ H014 | | /-----20 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 3 16 17 2 2 2 H002 (1) 16 0 0 0 14 16 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 2 H001 (7) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 | | /-------16 \--------- H011 | | | | /--------- H008 | +-------15 /--------17 | \--------- H006 | | | | | \------------------ H009 /-------18 | | | \--------------------------- H014 | | /-------19 \------------------------------------- H013 | | | \---------------------------------------------- H001 /-------21 | | /--------- H003 | \--------------------------------------------20 --------22 \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 1 1 3 17 18 2 2 2 15 17 2 0 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 16 17 0 0 2 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H014 (5) 18 2 0 2 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H006 | | | \---------------- H009 /------17 | | /-------- H007 | | | | \--------------16-------- H012 /-------18 | | | \-------- H011 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_18 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 1 1 1 16 17 2 2 2 15 16 2 2 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H014 (5) 17 2 2 2 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | | \------------------ H009 | /--------16--------------------------- H007 | | | +--------------------------- H012 /-------17 | | | \--------------------------- H011 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 /------16 | | | \---------------- H009 | | /-------17 \------------------------ H006 | | /------18 \-------------------------------- H008 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | /------21--------------------------------------------------------- H013 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 2 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 | | /------17 \---------------- H009 | | | | /-------- H008 /-------18 \--------------16 | | \-------- H006 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------- H002 | | /------- H007 | | /-----15------14------- H012 | | | | | \------- H011 /-----16 | | | \--------------- H009 | | /-----17 \---------------------- H006 | | /------18 \----------------------------- H008 | | /-----19 \------------------------------------ H014 | | /-----20 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------- H007 | /----14 | | \------- H011 /----17 /-----15 | | | \------------- H012 | +-----16 | | \-------------------- H006 /-----18 | | | \--------------------------- H009 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 --> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 /------16 | | | \---------------- H009 | | /-------17 \------------------------ H006 | | /------18 \-------------------------------- H008 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-----------14 | \------- H009 | /-----17 /------- H007 | | /----15 | | | \------- H011 /----18 \-----16 | | \------------- H012 | | /-----19 \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------------------14 | \------- H009 | | /------- H007 /----18 /----15 | | | \------- H011 | | /-----16 | | | \------------- H012 /-----19 \-----17 | | \-------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------14 | \------- H009 | | /------- H007 | /------15 /-----17 | \------- H011 | +-----16 | | \--------------- H012 /-----18 | | | \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 /----17 | | | /----15 /------ H012 | | | \----14 | \----16 \------ H011 /----18 | | | \------------------ H009 | | /-----19 \------------------------------ H006 | | /----20 \------------------------------------ H008 | | /----21 \------------------------------------------- H014 | | /----22 \------------------------------------------------- H013 | | | \------------------------------------------------------- H001 /----24 | | /------ H003 | \-----------------------------------------------------23 -----25 \------ H005 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H006 (12) 15 1 1 1 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H014 | | /------16 \---------------- H006 | | /-------17 \------------------------ H009 | | | \-------------------------------- H007 /------18 | +----------------------------------------- H012 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H014 (5) 15 2 2 2 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H006 | | /------16 \---------------- H014 | | /-------17 \------------------------ H009 | | | \-------------------------------- H007 /------18 | +----------------------------------------- H012 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H006 (12) 14 0 0 1 H014 (5) 15 2 1 2 H009 (11) 17 1 0 1 H007 (3) 18 1 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------------- H002 | | /------- H008 /-----16 /------14 | | | \------- H006 | \-----15 /-----17 \--------------- H014 | | /------18 \----------------------------- H009 | | | \------------------------------------ H007 /-----19 | +-------------------------------------------- H012 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 --> 2 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----18 | | | \-------------------- H009 | | /----19 \--------------------------------- H006 | | /-----20 \---------------------------------------- H008 | | /-----21 \---------------------------------------------- H014 | | | \----------------------------------------------------- H013 | /----23------------------------------------------------------------ H001 | | | | /------- H003 ------24 \---------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----18 | | | \-------------------- H009 | | /----19 \--------------------------------- H006 | | /-----20 \---------------------------------------- H008 | | /-----21 \---------------------------------------------- H014 | | | \----------------------------------------------------- H001 | /----23------------------------------------------------------------ H013 | | | | /------- H003 ------24 \---------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------- H002 | /-----15 /------- H008 | \------14 /-----16 \------- H006 | | /-----17 \---------------------- H009 | | | \----------------------------- H007 /------18 | +------------------------------------ H012 | | /-----19 \------------------------------------ H011 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 2 2 2 16 17 0 0 1 15 16 1 1 1 14 15 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H014 (5) 15 2 1 2 H008 (4) 16 1 0 1 H006 (12) 17 0 0 0 H012 (10) 18 0 0 0 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------14 | \------- H009 /-----15 | \--------------- H014 /-----16 | \---------------------- H008 /-----17 | \----------------------------- H006 /------18 | \------------------------------------ H012 | /-----19-------------------------------------------- H007 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> H008 9 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H014 | | /------16 \---------------- H009 | | /-------17 \------------------------ H006 | | | \-------------------------------- H012 /------18 | +----------------------------------------- H007 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------14 | \------- H009 | /-----17 /------- H007 | | /------15 | | | \------- H011 /-----18 \-----16 | | \--------------- H012 | | /------19 \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 14 16 0 0 1 H002 (1) 14 0 0 0 H014 (5) 14 2 2 2 H009 (11) 14 1 1 1 15 16 1 0 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 | /-------14--------- H014 | | | \--------- H009 /-------16 | | /--------- H008 | \-------15 /--------17 \--------- H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_14 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 --> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_17 --> H012 11 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 2 2 2 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 0 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------14 | \-------- H009 /------16 | | /-------- H008 | \------15 /------17 \-------- H006 | | | \------------------------ H012 /-------18 | +-------------------------------- H007 | | /------19 \-------------------------------- H011 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H012 11 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------14 | \------- H009 | /-----17 /------- H007 | | /------15 | | | \------- H011 /-----18 \-----16 | | \--------------- H012 | | /------19 \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 2 16 18 2 2 2 15 16 1 0 1 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 H008 (4) 15 1 1 1 H014 (5) 16 0 0 1 17 18 2 1 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 | /-------14--------- H009 | | /-------15 \--------- H006 | | /--------16 \------------------ H008 | | | \--------------------------- H014 /-------18 | | /--------- H007 | | | | \--------------------------17--------- H012 /-------19 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------21 | +------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 10 1 0.500 2 --> 1 node_15 --> node_14 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 3 16 18 2 2 2 15 16 2 0 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 H014 (5) 16 0 0 2 17 18 2 0 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | /--------16 \------------------ H009 | | | \--------------------------- H014 /-------18 | | /--------- H007 | | | | \--------------------------17--------- H012 /-------19 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------21 | +------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 14 17 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 16 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------14 | \--------- H009 | /--------17 /--------- H008 | | /-------15 | | | \--------- H006 | \-------16 /-------19 \------------------ H014 | | | | /--------- H007 | | | /-------20 \--------------------------18--------- H012 | | | | | \--------- H011 | | | \---------------------------------------------- H013 /-------22 | +------------------------------------------------------- H001 | | | | /--------- H003 --------23 \--------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 3 16 18 2 2 2 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 16 1 1 2 17 18 1 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------14 | \---------- H009 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 /---------21 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------22 \----------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 15 17 2 0 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 16 17 0 0 2 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H014 (5) 18 2 0 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | | \------------------ H009 /--------17 | | /--------- H007 | | | | \----------------16--------- H012 /-------18 | | | \--------- H011 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_18 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 0 0 0 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------14 | \-------- H009 | /------15---------------- H008 | | /------16 \---------------- H006 | | | \------------------------ H012 /-------17 | +-------------------------------- H007 | | /------18 \-------------------------------- H011 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H007 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 1 1 1 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 /-------15 | | | \--------- H011 | | | +------------------ H009 /--------16 | | | \------------------ H006 | | /-------17 \--------------------------- H008 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------14 | \-------- H009 | | /-------- H007 | /------15 /------17 | \-------- H011 | +------16 | | \---------------- H012 /-------18 | | | \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------14 | \------- H009 | | /------- H007 /-----18 /------15 | | | \------- H011 | | /-----16 | | | \--------------- H012 /------19 \-----17 | | \---------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 2 16 17 1 0 2 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------14 | \--------- H009 /-------16 | | /--------- H008 | \-------15 /--------17 \--------- H006 | | | \--------------------------- H014 /-------19 | | /--------- H007 | | | | \--------------------------18--------- H012 /-------20 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------22 | +------------------------------------------------------- H001 | | | | /--------- H003 --------23 \--------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 node_16 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H002 (1) 14 0 0 0 H014 (5) 14 2 2 2 H009 (11) 14 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 | /-------14--------- H014 | | | \--------- H009 /-------15 | +------------------ H008 | | /--------16 \------------------ H006 | | | \--------------------------- H012 /-------17 | +------------------------------------- H007 | | /-------18 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_17 --> H007 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 2 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------15-------14--------- H012 | | | | | \--------- H011 | | /--------17 \------------------ H009 | | | | /--------- H008 /-------18 \----------------16 | | \--------- H006 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 2 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------15-------14--------- H012 | | | | | \--------- H011 | | /--------17 \------------------ H009 | | | | /--------- H008 /-------18 \----------------16 | | \--------- H006 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H001 | /-------21------------------------------------------------------- H013 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------14 | \------- H009 | | /------- H007 /-----18 /------15 | | | \------- H011 | | /-----16 | | | \--------------- H012 /------19 \-----17 | | \---------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 2 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 | | /------17 \---------------- H009 | | | | /-------- H008 /-------18 \--------------16 | | \-------- H006 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H001 | | | \------------------------------------------------- H013 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 3 16 17 2 2 2 H002 (1) 16 0 0 0 14 16 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 2 H013 (6) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 | | /-------16 \--------- H011 | | | | /--------- H008 | +-------15 /--------17 | \--------- H006 | | | | | \------------------ H009 /-------18 | | | \--------------------------- H014 | | /-------19 \------------------------------------- H001 | | | \---------------------------------------------- H013 /-------21 | | /--------- H003 | \--------------------------------------------20 --------22 \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 | | | /-----15 /------- H012 /----17 | \----14 | +-----16 \------- H011 | | | | | \-------------------- H009 /-----18 | | | \--------------------------- H006 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------- H007 | /----14 | | \------- H011 /----17 /-----15 | | | \------------- H012 | +-----16 | | \-------------------- H006 /-----18 | | | \--------------------------- H009 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 --> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 1 1 1 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 0 H013 (6) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 /-------15 | | | \--------- H011 | | | +------------------ H009 /--------16 | | | \------------------ H006 | | /-------17 \--------------------------- H008 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H001 | /-------20------------------------------------------------------- H013 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 17 18 1 1 1 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 | | \------14 /-----18-----16 \------- H011 | | | | | \---------------------- H009 | | /------19 | /------- H008 | | \--------------------17 | | \------- H006 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 18 19 1 1 1 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----19 | | | \-------------------- H009 | | | | /------- H008 /----20 \------------------------18 | | \------- H006 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 17 18 1 1 1 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------15 /-------- H012 | | \------14 /-------18------16 \-------- H011 | | | | | \------------------------ H009 | | /------19 | /-------- H008 | | \----------------------17 | | \-------- H006 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------22 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 | | | /-----15 /------- H012 /----17 | \----14 | +-----16 \------- H011 | | | | | \-------------------- H009 /-----18 | | | \--------------------------- H006 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----18 | \--------------- H012 | +-----17 | | | /------- H008 | | \-------------16 /------19 | \------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 0 0 0 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----17 | \--------------- H012 | | | | +-----16---------------------- H008 | | | /------18 | \---------------------- H006 | | | | | \----------------------------- H009 /-----19 | | | \------------------------------------ H014 | | /-----20 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 17 18 1 1 1 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 | | \------14 /-----18-----16 \------- H011 | | | | | \---------------------- H009 | | /------19 | /------- H008 | | \--------------------17 | | \------- H006 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 17 18 1 1 1 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------15 /-------- H012 | | \------14 /-------18------16 \-------- H011 | | | | | \------------------------ H009 | | /------19 | /-------- H008 | | \----------------------17 | | \-------- H006 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 14 16 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 0 H013 (6) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------14---------- H012 | | /--------16 \---------- H011 | | | | /---------- H008 | +---------15 /---------17 | \---------- H006 | | | | | \--------------------- H009 /--------18 | | | \------------------------------- H014 | | | \------------------------------------------ H001 /---------20 | +---------------------------------------------------- H013 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------18 | \---------------- H012 | +------17 | | | /-------- H008 | | \--------------16 /------19 | \-------- H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 0 0 0 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------14 | \------- H009 | | /------- H007 | /------15 /------19 | \------- H011 | | /-----16 | | | \--------------- H012 | | /-----17 /-----20 | | \---------------------- H006 | | \-----18 | | \----------------------------- H008 /-----21 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 /------23 | +---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 0 0 0 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------17 | \---------------- H012 | | | | +------16------------------------ H008 | | | /------18 | \------------------------ H006 | | | | | \-------------------------------- H009 /------19 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------21 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 14 16 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------14---------- H012 | | /--------16 \---------- H011 | | | | /---------- H008 | +---------15 /---------17 | \---------- H006 | | | | | \--------------------- H009 /--------18 | | | \------------------------------- H014 | | | \------------------------------------------ H013 /---------20 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 18 19 1 1 1 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----17 | | | /-----15 /------- H012 | | | \------14 | \-----16 \------- H011 /------19 | | | \---------------------- H009 | | | | /------- H008 /-----20 \---------------------------18 | | \------- H006 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------14 | \-------- H009 | | /-------- H007 | /------15 /------17 | \-------- H011 | +------16 | | \---------------- H012 /-------18 | | | \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | /------22--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 0 0 0 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------------------------14 | \------- H009 | | /------- H007 | /----15 /-----19 | \------- H011 | | /-----16 | | | \------------- H012 | | /-----17 /----20 | | \-------------------- H006 | | \----18 | | \--------------------------- H008 /-----21 | | | \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 /----17 | | | /----15 /------ H012 | | | \----14 | \----16 \------ H011 /----18 | | | \------------------ H009 | | /-----19 \------------------------------ H006 | | /----20 \------------------------------------ H008 | | /----21 \------------------------------------------- H014 | | /----22 \------------------------------------------------- H001 | | | \------------------------------------------------------- H013 /----24 | | /------ H003 | \-----------------------------------------------------23 -----25 \------ H005 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-----------14 | \------- H009 | /-----17 /------- H007 | | /----15 | | | \------- H011 /----18 \-----16 | | \------------- H012 | | /-----19 \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------------------14 | \------- H009 | | /------- H007 /----18 /----15 | | | \------- H011 | | /-----16 | | | \------------- H012 /-----19 \-----17 | | \-------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------14 | \------- H009 | | /------- H007 | /------15 /-----17 | \------- H011 | +-----16 | | \--------------- H012 /-----18 | | | \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 18 19 1 1 1 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----19 | | | \-------------------- H009 | | | | /------- H008 /----20 \------------------------18 | | \------- H006 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 /-----17 | \------14 | +-----16 \------- H011 | | | | | \---------------------- H009 /------18 | | | \----------------------------- H006 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 18 19 1 1 1 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----17 | | | /-----15 /------- H012 | | | \------14 | \-----16 \------- H011 /------19 | | | \---------------------- H009 | | | | /------- H008 /-----20 \---------------------------18 | | \------- H006 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 /-----17 | \------14 | +-----16 \------- H011 | | | | | \---------------------- H009 /------18 | | | \----------------------------- H006 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------22---------------------------------------------------------- H013 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 0 0 0 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------14 | \------- H009 | | /------- H007 | /------15 /------19 | \------- H011 | | /-----16 | | | \--------------- H012 | | /-----17 /-----20 | | \---------------------- H006 | | \-----18 | | \----------------------------- H008 /-----21 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 /------23 | +---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 /-----17 /-----15 | | | \--------------- H012 | +-----16 | | \---------------------- H006 /------18 | | | \----------------------------- H009 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 --> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 /-----17 /-----15 | | | \--------------- H012 | +-----16 | | \---------------------- H006 /------18 | | | \----------------------------- H009 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------22---------------------------------------------------------- H013 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 --> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----18 | \--------------- H012 | +-----17 | | | /------- H008 | | \-------------16 /------19 | \------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 0 0 0 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------------------------14 | \------- H009 | | /------- H007 | /----15 /-----19 | \------- H011 | | /-----16 | | | \------------- H012 | | /-----17 /----20 | | \-------------------- H006 | | \----18 | | \--------------------------- H008 /-----21 | | | \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------18 | \---------------- H012 | +------17 | | | /-------- H008 | | \--------------16 /------19 | \-------- H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------22 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 0 0 0 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----17 | \--------------- H012 | | | | +-----16---------------------- H008 | | | /------18 | \---------------------- H006 | | | | | \----------------------------- H009 /-----19 | | | \------------------------------------ H014 | | /-----20 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 0 0 0 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------17 | \---------------- H012 | | | | +------16------------------------ H008 | | | /------18 | \------------------------ H006 | | | | | \-------------------------------- H009 /------19 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------21 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 altree-v1.3.1/test/paup/ancestor_absent/association/run_altree0000755000175000017500000000033412043315246025014 0ustar vdanjeanvdanjean#!/bin/sh -x #To run paup paup caco.paup #To perform the association test ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso --data-qual qualitative altree-v1.3.1/test/paup/ancestor_absent/association/test.tree0000644000175000017500000002455312043315246024577 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Wed Apr 23 21:53:16 2008] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_absent/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 69978 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.09 sec) ] tree PAUP_1 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_2 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_3 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_4 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_5 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_6 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_7 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_8 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_9 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_10 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_11 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_13 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_14 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_16 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005)),H010); tree PAUP_17 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_19 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_20 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_21 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_22 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_23 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_24 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_25 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_26 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_27 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_28 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_29 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_30 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_32 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_33 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_34 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_35 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_36 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_37 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_38 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_40 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_41 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_42 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_43 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005)),H010); tree PAUP_44 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_45 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_46 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_47 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_48 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_49 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_50 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_51 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_52 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_53 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_54 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_55 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_56 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_57 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_58 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_59 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_60 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_61 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_63 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_64 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_65 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_66 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005)),H010); tree PAUP_67 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_68 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005)),H010); tree PAUP_69 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_70 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_71 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_72 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_73 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005)),H010); tree PAUP_74 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_75 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_76 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_77 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_78 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_79 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_80 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_81 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_82 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005)),H010); tree PAUP_83 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_84 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_85 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_86 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005)),H010); tree PAUP_87 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005)),H010); tree PAUP_88 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_89 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005)),H010); End; altree-v1.3.1/test/paup/ancestor_absent/association/caco.paup0000644000175000017500000000212012043315246024515 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=13 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 [H004 222222222222] H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; ancstates *anc vector = 222222222222; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/ancestor_absent/association/nb_cas_control.txt0000644000175000017500000000030312043315246026450 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/ancestor_absent/association/1_caco.asso0000644000175000017500000000447512043315246024754 0ustar vdanjeanvdanjean /----* H002 (LEVEL: 4) case/control:8/6 | /----* H008 (LEVEL: 5) case/control:9/2 | | Site: 11 Sens: 2-->1 |----* 14 (LEVEL: 4) case/control:13/4 | | Site: 9 Sens: 1-->2 | \----* H014 (LEVEL: 5) case/control:4/2 | Site: 10 Sens: 1-->2 /----* 15 (LEVEL: 3) case/control:57/25 | | Site: 1 Sens: 2-->1 | | Site: 2 Sens: 2-->1 | |----* H009 (LEVEL: 4) case/control:8/2 | | Site: 12 Sens: 2-->1 | \----* H006 (LEVEL: 4) case/control:28/13 | Site: 11 Sens: 2-->1 |----* H007 (LEVEL: 3) case/control:7/13 | Site: 12 Sens: 2-->1 /----* 16 (LEVEL: 2) case/control:70/43 | | Site: 8 Sens: 2-->1 | | Site: 10 Sens: 2-->1 | | Site: 9 Sens: 2-->1 | |----* H012 (LEVEL: 3) case/control:1/4 | | Site: 11 Sens: 2-->1 | \----* H011 (LEVEL: 3) case/control:5/1 /----* 17 (LEVEL: 1) case/control:72/47 | | Site: 6 Sens: 2-->1 | | Site: 7 Sens: 2-->1 | \----* H013 (LEVEL: 2) case/control:2/4 |----* H001 (LEVEL: 1) case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 -----* 20+(19) (LEVEL: 0) case/control:102/74 | | [0] ddl=3 chi2=1.41 p_value_chi2=0.704 | [1] ddl=5 chi2=3.37 p_value_chi2=0.643 | [2] ddl=8 chi2=16.00 p_value_chi2=0.04 | [3] ddl=11 chi2=17.69 p_value_chi2=0.079 | [4] ddl=12 chi2=18.05 p_value_chi2=0.094 | /----* H003 (LEVEL: 2) case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 18 (LEVEL: 1) case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 (LEVEL: 2) case/control:7/7 | Site: 12 Sens: 2-->1 \----* H010 (LEVEL: 1) case/control:7/5 Site: 5 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 altree-v1.3.1/test/paup/outgr_absent/0000755000175000017500000000000012252703410017730 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/outgr_absent/localisation/0000755000175000017500000000000012252703410022411 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/outgr_absent/localisation/test.res.log0000644000175000017500000166627712043315246024720 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Fri Jan 13 11:12:53 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "standard" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H013 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 3 16 17 3 0 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | /---------17 \--------------------- H009 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | /------16 /-------- H008 | \------15 /------17 \-------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 | /---------17------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H001 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H006 | | | +------------------------ H014 | | | \------------------------ H009 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H001 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H013 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H001 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 3 17 18 2 0 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------15 | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H014 /--------20 | | /---------- H007 | | | | \------------------------------19---------- H012 /---------21 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------23--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 | /-------16------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 3 17 18 2 0 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------16 | \------------------ H006 /--------17 | \--------------------------- H008 /-------18 | \------------------------------------- H014 | /-------20 /--------- H007 | | | | \-----------------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H006 | +--------16 | | \--------------------- H014 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H014 | +--------16 | | \--------------------- H006 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 /----------15 | \------------ H009 | | /------------ H008 /----------17----------16 | | \------------ H006 | | | \------------------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H014 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 3 3 3 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /-------------------15 | \---------- H009 | /---------18 /---------- H008 | | /---------16 | | | \---------- H006 | \--------17 /--------20 \--------------------- H014 | | | | /---------- H007 | | | /---------21 \------------------------------19---------- H012 | | | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------23 +--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 3 16 17 2 0 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H009 | | /--------16 \---------- H006 | | /---------17 \--------------------- H008 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------17 | | /------------ H008 | \----------16 | \------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------16 | +------------------------ H008 | | | \------------------------ H014 /-----------18 | | /------------ H007 | | | | \----------------------17------------ H012 /----------19 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------16 | +--------------------- H008 | | /---------17 \--------------------- H006 | | | \------------------------------- H012 /--------18 | +------------------------------------------ H007 | | /---------19 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H006 | \------16 /-------18 \---------------- H014 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H014 | \------16 /-------18 \---------------- H006 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H013 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H013 | | | \------------------------------------------------------------ H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H001 | | | \------------------------------------------------------------ H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 3 3 3 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H014 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H006 /------19 | \----------------------------------------- H012 | /------20------------------------------------------------- H007 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H014 | | | +------------------------ H009 | | | \------------------------ H006 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H014 /-------19 \-------17 | | \------------------ H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H014 | | /-------19 \--------------------------- H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H014 | | /---------18 \--------------------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H009 | | /-------18 \--------------------------- H006 | | | \------------------------------------- H012 /-------19 | +---------------------------------------------- H007 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 altree-v1.3.1/test/paup/outgr_absent/localisation/caco.loc0000644000175000017500000000237212043315246024025 0ustar vdanjeanvdanjeanLocalisation method using S-character Results: site number 10 sens 2-->1 V_i = 3.32820117735137 site number 11 sens 1-->2 V_i = 0.792593923901217 site number 12 sens 1-->2 V_i = 0.792593923901217 site number 4 sens 2-->1 V_i = -0.277350098112615 site number 5 sens 2-->1 V_i = -0.277350098112615 site number 3 sens 2-->1 V_i = -0.277350098112615 site number 9 sens 2-->1 V_i = -0.277350098112615 site number 8 sens 2-->1 V_i = -0.277350098112615 site number 6 sens 2-->1 V_i = -0.392232270276368 site number 8 sens 1-->2 V_i = -0.392232270276368 site number 7 sens 2-->1 V_i = -0.392232270276368 site number 4 sens 1-->2 V_i = -0.392232270276368 site number 3 sens 1-->2 V_i = -0.392232270276368 site number 10 sens 1-->2 V_i = -0.392232270276368 site number 9 sens 1-->2 V_i = -0.392232270276368 site number 5 sens 1-->2 V_i = -0.392232270276368 site number 11 sens 2-->1 V_i = -0.480384461415261 site number 2 sens 2-->1 V_i = -0.480384461415261 site number 12 sens 2-->1 V_i = -0.480384461415261 site number 2 sens 1-->2 V_i = -0.480384461415261 site number 1 sens 2-->1 V_i = -0.480384461415261 site number 1 sens 1-->2 V_i = -0.480384461415261 site number 7 sens 1-->2 V_i = -0.554700196225229 site number 6 sens 1-->2 V_i = -0.554700196225229 altree-v1.3.1/test/paup/outgr_absent/localisation/test.tree0000644000175000017500000002526312043315246024265 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Fri Jan 13 11:12:53 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_absent/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005)); tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005)); tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005)); tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005)); tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005)); tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005)); tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005)); End; altree-v1.3.1/test/paup/outgr_absent/localisation/et_caco.paup0000644000175000017500000000221212043315246024676 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 2222211222220 H001 112222222222? H003 221122222222? H000 222222222222? H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; [ancstates *anc vector = 2222222222221?;] end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/outgr_absent/localisation/caco.paup0000644000175000017500000000212212043315246024206 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; [ancstates *anc vector = 2222222222221;] end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/outgr_absent/localisation/nb_cas_control.txt0000644000175000017500000000030312043315246026137 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/outgr_absent/localisation/run-prog0000755000175000017500000000117312043315246024116 0ustar vdanjeanvdanjean#!/bin/sh -x # To add the character S # p=102 case haplotypes/176 haplotypes # The outgroup is not specified in the file nb_cas_control.txt. The # option --outgroup must then be used ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.58 \ --outgroup H000 # To run paup on the file containing the character S paup et_caco.paup # To perform the localisation test # All 89 equiparsimonious trees are analysed ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc altree-v1.3.1/test/paup/outgr_absent/association/0000755000175000017500000000000012252703410022244 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/outgr_absent/association/test.res.log0000644000175000017500000163345712043315246024545 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Thu Jan 12 21:57:50 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "standard" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H013 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 2 16 17 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | /---------17 \--------------------- H009 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | /------16 /-------- H008 | \------15 /------17 \-------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 | /---------17------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H001 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H006 | | | +------------------------ H014 | | | \------------------------ H009 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H001 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H013 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H001 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 2 17 18 1 0 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------15 | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H014 /--------20 | | /---------- H007 | | | | \------------------------------19---------- H012 /---------21 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------23--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 0 0 0 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 | /-------16------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 2 17 18 1 0 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------16 | \------------------ H006 /--------17 | \--------------------------- H008 /-------18 | \------------------------------------- H014 | /-------20 /--------- H007 | | | | \-----------------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H006 | +--------16 | | \--------------------- H014 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H014 | +--------16 | | \--------------------- H006 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 /----------15 | \------------ H009 | | /------------ H008 /----------17----------16 | | \------------ H006 | | | \------------------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H014 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 2 2 2 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /-------------------15 | \---------- H009 | /---------18 /---------- H008 | | /---------16 | | | \---------- H006 | \--------17 /--------20 \--------------------- H014 | | | | /---------- H007 | | | /---------21 \------------------------------19---------- H012 | | | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------23 +--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 2 16 17 1 0 1 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H009 | | /--------16 \---------- H006 | | /---------17 \--------------------- H008 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------17 | | /------------ H008 | \----------16 | \------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------16 | +------------------------ H008 | | | \------------------------ H014 /-----------18 | | /------------ H007 | | | | \----------------------17------------ H012 /----------19 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------16 | +--------------------- H008 | | /---------17 \--------------------- H006 | | | \------------------------------- H012 /--------18 | +------------------------------------------ H007 | | /---------19 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H006 | \------16 /-------18 \---------------- H014 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H014 | \------16 /-------18 \---------------- H006 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H013 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H013 | | | \------------------------------------------------------------ H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H001 | | | \------------------------------------------------------------ H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H014 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H006 /------19 | \----------------------------------------- H012 | /------20------------------------------------------------- H007 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H014 | | | +------------------------ H009 | | | \------------------------ H006 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H014 /-------19 \-------17 | | \------------------ H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H014 | | /-------19 \--------------------------- H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H014 | | /---------18 \--------------------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H009 | | /-------18 \--------------------------- H006 | | | \------------------------------------- H012 /-------19 | +---------------------------------------------- H007 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 altree-v1.3.1/test/paup/outgr_absent/association/run_altree0000755000175000017500000000054312043315246024340 0ustar vdanjeanvdanjean#!/bin/sh -x # To run paup paup caco.paup # To perform the association test (on the first tree found in the file # test.res.log) # The outgroup is removed from the file before analysis # (option --remove-outgroup) ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ --remove-outgroup -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso altree-v1.3.1/test/paup/outgr_absent/association/test.tree0000644000175000017500000002516412043315246024120 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Thu Jan 12 21:57:50 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_absent/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005)); tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005)); tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005)); tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005)); tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005)); tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005)); tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005)); End; altree-v1.3.1/test/paup/outgr_absent/association/caco.paup0000644000175000017500000000212212043315246024041 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; [ancstates *anc vector = 2222222222221;] end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/outgr_absent/association/nb_cas_control.txt0000644000175000017500000000030312043315246025772 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/outgr_absent/association/1_caco.asso0000644000175000017500000000430212043315246024263 0ustar vdanjeanvdanjean /----* H002 case/control:8/6 | /----* H007 case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 case/control:1/4 | | Site: 11 Sens: 2-->1 |----* 15 case/control:13/18 | | Site: 1 Sens: 1-->2 | | Site: 2 Sens: 1-->2 | \----* H011 case/control:5/1 /----* 17 case/control:66/41 | | Site: 10 Sens: 2-->1 | | Site: 9 Sens: 2-->1 | | /----* H008 case/control:9/2 | | | Site: 9 Sens: 1-->2 | |----* 16 case/control:37/15 | | | Site: 11 Sens: 2-->1 | | \----* H006 case/control:28/13 | \----* H009 case/control:8/2 | Site: 12 Sens: 2-->1 /----* 18 case/control:70/43 | | Site: 8 Sens: 2-->1 | | Site: 1 Sens: 2-->1 | | Site: 2 Sens: 2-->1 | \----* H014 case/control:4/2 /----* 19 case/control:72/47 | | Site: 6 Sens: 2-->1 | | Site: 7 Sens: 2-->1 | \----* H013 case/control:2/4 |----* H010 case/control:7/5 | Site: 5 Sens: 2-->1 -----* 21 case/control:102/74 | | [0] ddl=3 chi2=1.41 p_value_chi2=0.704 | [1] ddl=5 chi2=3.37 p_value_chi2=0.641 | [2] ddl=6 chi2=3.43 p_value_chi2=0.778 | [3] ddl=9 chi2=11.80 p_value_chi2=0.217 | [4] ddl=12 chi2=18.05 p_value_chi2=0.109 |----* H001 case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 | /----* H003 case/control:5/6 | | Site: 4 Sens: 2-->1 \----* 20 case/control:12/13 | Site: 3 Sens: 2-->1 \----* H005 case/control:7/7 Site: 12 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0.5 level 4 p-value (non corrected) 0.5 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 altree-v1.3.1/test/paup/unrooted_present/0000755000175000017500000000000012252703410020633 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/unrooted_present/localisation/0000755000175000017500000000000012252703410023314 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/unrooted_present/localisation/test.res.log0000644000175000017500000165467012043315246025615 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Tue Jan 10 21:25:45 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 3 3 3 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 19 20 1 1 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 2 (rooted using default outgroup) Branch lengths and linkages for tree #2 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 3 (rooted using default outgroup) Branch lengths and linkages for tree #3 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 3 3 3 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H014 +------------------------------------------20 | \----------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 4 (rooted using default outgroup) Branch lengths and linkages for tree #4 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------21 /---------- H008 | +---------------------------------------------------20 | | \---------- H014 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 5 (rooted using default outgroup) Branch lengths and linkages for tree #5 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------22 /---------- H008 | | /---------20 | | | \---------- H014 | \----------------------------------------21 | \--------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 6 (rooted using default outgroup) Branch lengths and linkages for tree #6 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 1 0 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------21 | | | \------------ H011 | | | | /------------ H008 | \-----------------------------------------------20 | \------------ H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 9 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 7 (rooted using default outgroup) Branch lengths and linkages for tree #7 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 3 3 3 17 19 2 2 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 21 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------20 \------------ H011 | | | +------------------------------------------------------------- H008 | | | \------------------------------------------------------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 8 (rooted using default outgroup) Branch lengths and linkages for tree #8 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 3 19 20 3 2 3 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 20 1 0 1 H008 (4) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------19 | | | /--------- H007 | | | | | | \--------------------------18--------- H012 | /-------20 | | | | \--------- H011 | | | | /-------21 \---------------------------------------------- H014 | | | +-------22 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 9 (rooted using default outgroup) Branch lengths and linkages for tree #9 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H006 (12) 22 1 0 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H014 \--------------------------------------------------22 \--------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 --> 1 Tree number 10 (rooted using default outgroup) Branch lengths and linkages for tree #10 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 3 3 3 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H006 +------------------------------------------20 | \----------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 11 (rooted using default outgroup) Branch lengths and linkages for tree #11 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------18 | | +------------------------------------- H007 | | | | /-------19 \------------------------------------- H011 | | | | /-------20 \---------------------------------------------- H012 | | | | | \------------------------------------------------------- H006 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 12 (rooted using default outgroup) Branch lengths and linkages for tree #12 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 3 3 3 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 19 20 1 1 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 20 2 2 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_20 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 13 (rooted using default outgroup) Branch lengths and linkages for tree #13 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 14 (rooted using default outgroup) Branch lengths and linkages for tree #14 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 15 (rooted using default outgroup) Branch lengths and linkages for tree #15 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 16 (rooted using default outgroup) Branch lengths and linkages for tree #16 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 3 H007 (3) 20 1 1 2 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 21 22 2 1 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 17 (rooted using default outgroup) Branch lengths and linkages for tree #17 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 18 (rooted using default outgroup) Branch lengths and linkages for tree #18 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 0 0 2 19 20 3 2 3 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 20 1 0 1 H008 (4) 21 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------21 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 19 (rooted using default outgroup) Branch lengths and linkages for tree #19 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 20 (rooted using default outgroup) Branch lengths and linkages for tree #20 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 21 (rooted using default outgroup) Branch lengths and linkages for tree #21 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 3 H007 (3) 22 2 1 2 H012 (10) 22 2 1 2 H011 (13) 22 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 22 (rooted using default outgroup) Branch lengths and linkages for tree #22 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 2 1 2 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 3 H007 (3) 22 1 1 2 H012 (10) 22 1 1 2 H011 (13) 22 1 0 1 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_22 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 23 (rooted using default outgroup) Branch lengths and linkages for tree #23 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 3 22 23 0 0 1 H007 (3) 22 2 1 2 H011 (13) 22 0 0 1 H012 (10) 23 2 0 2 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H001 | | | | /------19 \-------------------------------- H013 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 24 (rooted using default outgroup) Branch lengths and linkages for tree #24 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 25 (rooted using default outgroup) Branch lengths and linkages for tree #25 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 3 3 3 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 23 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------22 \------------ H011 | | | | /------------ H008 | | /----------20 | | | \------------ H006 | \-----------------------------------21 | \------------------------ H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 26 (rooted using default outgroup) Branch lengths and linkages for tree #26 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 3 19 20 3 2 3 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------20 | | | \------------ H011 | | | \------------------------------------------------------------- H014 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 27 (rooted using default outgroup) Branch lengths and linkages for tree #27 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 3 18 20 2 2 2 17 18 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H007 | | | | \-----------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 13 1 0.500 1 ==> 0 node_20 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 28 (rooted using default outgroup) Branch lengths and linkages for tree #28 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 29 (rooted using default outgroup) Branch lengths and linkages for tree #29 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 1 19 20 3 3 3 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 0 0 0 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H014 (5) 22 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | +---------------- H001 | | | /------16 /-------- H003 | | +------15 | | | \-------- H005 | /------17 | | | | \---------------- H000 | | | | | \------------------------ H013 23 /-------18 | | +-------------------------------- H007 | | | | /------19 \-------------------------------- H011 | | | | /------20 \----------------------------------------- H012 | | | | /------21 \------------------------------------------------- H006 | | | +------22 \--------------------------------------------------------- H008 | | | \----------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 30 (rooted using default outgroup) Branch lengths and linkages for tree #30 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H012 | | | \--------------------------------------------------------------- H006 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 31 (rooted using default outgroup) Branch lengths and linkages for tree #31 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 20 21 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 22 2 2 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 32 (rooted using default outgroup) Branch lengths and linkages for tree #32 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 33 (rooted using default outgroup) Branch lengths and linkages for tree #33 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 34 (rooted using default outgroup) Branch lengths and linkages for tree #34 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H013 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H001 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 35 (rooted using default outgroup) Branch lengths and linkages for tree #35 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 36 (rooted using default outgroup) Branch lengths and linkages for tree #36 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | | | \------------ H011 +----------21 | | /------------ H008 | +-----------------------------------------------20 | | \------------ H006 | | | \------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 37 (rooted using default outgroup) Branch lengths and linkages for tree #37 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 3 3 3 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | | | \------------------------------------------------- H014 | | +----------19------------------------------------------------------------- H007 | | | +------------------------------------------------------------- H012 | | | \------------------------------------------------------------- H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 38 (rooted using default outgroup) Branch lengths and linkages for tree #38 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 3 3 3 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 22 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------21 | +---------------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 39 (rooted using default outgroup) Branch lengths and linkages for tree #39 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 H007 (3) 20 1 0 1 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H012 | | | | /-------20 \---------------------------------------------- H011 | | | +-------21 \------------------------------------------------------- H007 | | | \---------------------------------------------------------------- H009 | | /--------- H008 \--------------------------------------------------------------22 \--------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H007 12 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 40 (rooted using default outgroup) Branch lengths and linkages for tree #40 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 41 (rooted using default outgroup) Branch lengths and linkages for tree #41 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 42 (rooted using default outgroup) Branch lengths and linkages for tree #42 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 43 (rooted using default outgroup) Branch lengths and linkages for tree #43 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 3 19 20 3 2 3 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------22 \---------------------------------------------------- H014 | | | | /---------- H008 | \---------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 44 (rooted using default outgroup) Branch lengths and linkages for tree #44 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H014 (5) 22 2 2 2 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 Tree number 45 (rooted using default outgroup) Branch lengths and linkages for tree #45 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H014 (5) 22 2 1 2 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H006 \--------------------------------------------------22 \--------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 Tree number 46 (rooted using default outgroup) Branch lengths and linkages for tree #46 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 47 (rooted using default outgroup) Branch lengths and linkages for tree #47 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 3 3 3 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 0 0 0 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 21 2 2 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 21 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------20 | +--------------------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 48 (rooted using default outgroup) Branch lengths and linkages for tree #48 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 3 H007 (3) 21 1 1 2 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 49 (rooted using default outgroup) Branch lengths and linkages for tree #49 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 3 H007 (3) 21 1 1 2 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 50 (rooted using default outgroup) Branch lengths and linkages for tree #50 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 51 (rooted using default outgroup) Branch lengths and linkages for tree #51 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 1 1 3 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 2 20 21 2 0 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 1 1 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H007 | | | | \---------------------------------------------------20---------- H012 | | | \---------- H011 | | /---------- H008 +-------------------------------------------------------------22 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 13 1 0.500 1 ==> 0 node_21 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 52 (rooted using default outgroup) Branch lengths and linkages for tree #52 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 3 H007 (3) 20 1 1 2 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 21 22 2 1 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 53 (rooted using default outgroup) Branch lengths and linkages for tree #53 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 3 H007 (3) 22 2 1 2 H012 (10) 22 2 1 2 H011 (13) 22 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 54 (rooted using default outgroup) Branch lengths and linkages for tree #54 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 3 H007 (3) 23 2 0 2 22 23 0 0 1 H012 (10) 22 2 1 2 H011 (13) 22 0 0 1 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | 25 /-------19 \------------------------------------- H001 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 55 (rooted using default outgroup) Branch lengths and linkages for tree #55 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 2 1 2 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 3 H007 (3) 22 1 1 2 H012 (10) 22 1 1 2 H011 (13) 22 1 0 1 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_22 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 56 (rooted using default outgroup) Branch lengths and linkages for tree #56 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 57 (rooted using default outgroup) Branch lengths and linkages for tree #57 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 58 (rooted using default outgroup) Branch lengths and linkages for tree #58 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 3 H007 (3) 19 1 1 2 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 20 21 2 1 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 59 (rooted using default outgroup) Branch lengths and linkages for tree #59 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 60 (rooted using default outgroup) Branch lengths and linkages for tree #60 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 61 (rooted using default outgroup) Branch lengths and linkages for tree #61 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 3 H007 (3) 19 1 1 2 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 20 21 2 1 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 62 (rooted using default outgroup) Branch lengths and linkages for tree #62 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 63 (rooted using default outgroup) Branch lengths and linkages for tree #63 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 64 (rooted using default outgroup) Branch lengths and linkages for tree #64 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 2 1 2 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 3 H007 (3) 23 1 0 2 22 23 0 0 1 H012 (10) 22 1 1 2 H011 (13) 22 1 0 1 H009 (11) 24 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | 25 /---------19 \------------------------------------------ H013 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_22 --> H011 13 1 0.333 0 --> 1 node_24 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 65 (rooted using default outgroup) Branch lengths and linkages for tree #65 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 3 H007 (3) 21 1 0 2 20 21 0 0 1 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 22 2 0 2 23 24 2 1 2 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 66 (rooted using default outgroup) Branch lengths and linkages for tree #66 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 3 20 21 1 1 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 67 (rooted using default outgroup) Branch lengths and linkages for tree #67 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 3 20 21 0 0 1 H007 (3) 20 1 1 2 H011 (13) 20 1 0 1 H012 (10) 21 1 0 2 22 23 2 0 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 68 (rooted using default outgroup) Branch lengths and linkages for tree #68 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 69 (rooted using default outgroup) Branch lengths and linkages for tree #69 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 3 H007 (3) 23 2 0 2 22 23 0 0 1 H012 (10) 22 2 1 2 H011 (13) 22 0 0 1 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | 25 /-------19 \------------------------------------- H013 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 70 (rooted using default outgroup) Branch lengths and linkages for tree #70 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 1 1 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 1 0 1 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 13 1 0.333 1 --> 0 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 71 (rooted using default outgroup) Branch lengths and linkages for tree #71 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 72 (rooted using default outgroup) Branch lengths and linkages for tree #72 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 3 22 23 0 0 1 H007 (3) 22 2 1 2 H011 (13) 22 0 0 1 H012 (10) 23 2 0 2 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H013 | | | | /------19 \-------------------------------- H001 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 73 (rooted using default outgroup) Branch lengths and linkages for tree #73 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 3 H007 (3) 20 1 0 2 19 20 0 0 1 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 H009 (11) 21 2 0 2 22 23 2 1 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 74 (rooted using default outgroup) Branch lengths and linkages for tree #74 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 3 19 20 0 0 1 H007 (3) 19 1 1 2 H011 (13) 19 1 0 1 H012 (10) 20 1 0 2 21 22 2 0 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 75 (rooted using default outgroup) Branch lengths and linkages for tree #75 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 76 (rooted using default outgroup) Branch lengths and linkages for tree #76 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 77 (rooted using default outgroup) Branch lengths and linkages for tree #77 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 1 0 2 21 22 0 0 1 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 23 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H013 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 78 (rooted using default outgroup) Branch lengths and linkages for tree #78 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 1 0 2 21 22 0 0 1 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 23 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H001 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 79 (rooted using default outgroup) Branch lengths and linkages for tree #79 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 80 (rooted using default outgroup) Branch lengths and linkages for tree #80 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 81 (rooted using default outgroup) Branch lengths and linkages for tree #81 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 3 19 20 0 0 1 H007 (3) 19 1 1 2 H011 (13) 19 1 0 1 H012 (10) 20 1 0 2 21 22 2 0 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 82 (rooted using default outgroup) Branch lengths and linkages for tree #82 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 2 1 2 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 3 H007 (3) 23 1 0 2 22 23 0 0 1 H012 (10) 22 1 1 2 H011 (13) 22 1 0 1 H009 (11) 24 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | 25 /---------19 \------------------------------------------ H001 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_22 --> H011 13 1 0.333 0 --> 1 node_24 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 83 (rooted using default outgroup) Branch lengths and linkages for tree #83 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 3 H007 (3) 20 1 0 2 19 20 0 0 1 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 H009 (11) 21 2 0 2 22 23 2 1 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 84 (rooted using default outgroup) Branch lengths and linkages for tree #84 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 3 20 21 1 1 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 85 (rooted using default outgroup) Branch lengths and linkages for tree #85 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 86 (rooted using default outgroup) Branch lengths and linkages for tree #86 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 3 H007 (3) 21 1 0 2 20 21 0 0 1 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 22 2 0 2 23 24 2 1 2 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 87 (rooted using default outgroup) Branch lengths and linkages for tree #87 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 3 20 21 0 0 1 H007 (3) 20 1 1 2 H011 (13) 20 1 0 1 H012 (10) 21 1 0 2 22 23 2 0 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 88 (rooted using default outgroup) Branch lengths and linkages for tree #88 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 89 (rooted using default outgroup) Branch lengths and linkages for tree #89 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 1 1 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 1 0 1 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 13 1 0.333 1 --> 0 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 altree-v1.3.1/test/paup/unrooted_present/localisation/caco.loc0000644000175000017500000000174012043315246024726 0ustar vdanjeanvdanjeanLocalisation method using S-character Results: site number 12 sens 1-->2 V_i = 0.288675134594813 site number 2 sens 1-->2 V_i = 0 site number 6 sens 1-->2 V_i = 0 site number 8 sens 1-->2 V_i = 0 site number 4 sens 2-->1 V_i = 0 site number 3 sens 2-->1 V_i = 0 site number 1 sens 1-->2 V_i = 0 site number 10 sens 1-->2 V_i = 0 site number 7 sens 1-->2 V_i = 0 site number 9 sens 1-->2 V_i = 0 site number 5 sens 2-->1 V_i = 0 site number 12 sens 2-->1 V_i = 0 site number 10 sens 2-->1 V_i = -0.5 site number 11 sens 2-->1 V_i = -0.5 site number 11 sens 1-->2 V_i = -0.5 site number 3 sens 1-->2 V_i = -0.5 site number 4 sens 1-->2 V_i = -0.5 site number 8 sens 2-->1 V_i = -0.5 site number 5 sens 1-->2 V_i = -0.5 site number 9 sens 2-->1 V_i = -0.707106781186547 site number 6 sens 2-->1 V_i = -0.707106781186547 site number 1 sens 2-->1 V_i = -0.707106781186547 site number 7 sens 2-->1 V_i = -0.707106781186547 site number 2 sens 2-->1 V_i = -0.707106781186547 altree-v1.3.1/test/paup/unrooted_present/localisation/test.tree0000644000175000017500000002555012043315246025167 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Tue Jan 10 21:25:45 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/unrooted_present/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90406 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H014),H009,H006)); tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H014),H006),H009)); tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H014),H006),H009)); tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),((H008,H014),H006)),H009)); tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H014)),H009,H006)); tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H008,H014),H009,H006)); tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H006),H009)); tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H014),H006))); tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H006),H014),H009)); tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014)),H009)); tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H006),H014,H009)); tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_14 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_15 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_16 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_17 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_18 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H009,H006)); tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_21 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_22 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_24 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_25 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),((H008,H006),H014)),H009)); tree PAUP_26 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006),H009)); tree PAUP_27 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_28 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_29 = [&U] (H002,((((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),H008),H014),H009)); tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014),H009)); tree PAUP_31 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H006)),H014,H009)); tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),(H008,H006)),H009)); tree PAUP_33 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_34 = [&U] (H002,(((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_35 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H014),H006)); tree PAUP_36 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H006),H014),H009)); tree PAUP_37 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H007,H012,H011),(H008,H006),H009)); tree PAUP_38 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),H008,H006),H009)); tree PAUP_39 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H012,H011),H007),H009),(H008,H006))); tree PAUP_40 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_41 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_42 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_43 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006)),H009)); tree PAUP_44 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H006),H014)); tree PAUP_45 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H006),H014))); tree PAUP_46 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H008,H006),H014,H009)); tree PAUP_48 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_49 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_50 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_51 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_52 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_53 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_54 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_57 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_58 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_59 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_60 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_61 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_62 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_63 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_64 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_65 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_66 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_67 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_68 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_69 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_70 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_71 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_72 = [&U] (H002,((((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_73 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_74 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_75 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_76 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_77 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_78 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_79 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_81 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_82 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_83 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_84 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_85 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_86 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_87 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_88 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_89 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009)); End; altree-v1.3.1/test/paup/unrooted_present/localisation/et_caco.paup0000644000175000017500000000205612043315246025607 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 222221122222? H001 112222222222? H003 221122222222? H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 H000 2222222222220 ; end; begin assumptions; end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/unrooted_present/localisation/caco.paup0000644000175000017500000000177212043315246025123 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 H000 222222222222 ; end; begin assumptions; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/unrooted_present/localisation/nb_cas_control.txt0000644000175000017500000000033012043315246027042 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 H000 m098 c126 altree-v1.3.1/test/paup/unrooted_present/localisation/run-prog0000755000175000017500000000071012043315246025015 0ustar vdanjeanvdanjean#!/bin/sh -x #To obtain the paup input file containing the character S ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.5 # To run paup paup et_caco.paup # To perform the localisation analysis on the 89 equiparsimonious trees ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc altree-v1.3.1/test/paup/unrooted_present/association/0000755000175000017500000000000012252703410023147 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/unrooted_present/association/test.res.log0000644000175000017500000162205012043315246025433 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Tue Jan 10 20:35:47 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 2 (rooted using default outgroup) Branch lengths and linkages for tree #2 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 3 (rooted using default outgroup) Branch lengths and linkages for tree #3 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H014 +------------------------------------------20 | \----------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 4 (rooted using default outgroup) Branch lengths and linkages for tree #4 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------21 /---------- H008 | +---------------------------------------------------20 | | \---------- H014 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 5 (rooted using default outgroup) Branch lengths and linkages for tree #5 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------22 /---------- H008 | | /---------20 | | | \---------- H014 | \----------------------------------------21 | \--------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 6 (rooted using default outgroup) Branch lengths and linkages for tree #6 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 1 0 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------21 | | | \------------ H011 | | | | /------------ H008 | \-----------------------------------------------20 | \------------ H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> node_20 9 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 7 (rooted using default outgroup) Branch lengths and linkages for tree #7 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 2 2 2 17 19 2 2 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 21 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------20 \------------ H011 | | | +------------------------------------------------------------- H008 | | | \------------------------------------------------------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 8 (rooted using default outgroup) Branch lengths and linkages for tree #8 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 2 19 20 2 2 2 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 1 0 1 H008 (4) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------19 | | | /--------- H007 | | | | | | \--------------------------18--------- H012 | /-------20 | | | | \--------- H011 | | | | /-------21 \---------------------------------------------- H014 | | | +-------22 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 9 (rooted using default outgroup) Branch lengths and linkages for tree #9 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H006 (12) 22 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H014 \--------------------------------------------------22 \--------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 --> 1 Tree number 10 (rooted using default outgroup) Branch lengths and linkages for tree #10 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H006 +------------------------------------------20 | \----------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 11 (rooted using default outgroup) Branch lengths and linkages for tree #11 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------18 | | +------------------------------------- H007 | | | | /-------19 \------------------------------------- H011 | | | | /-------20 \---------------------------------------------- H012 | | | | | \------------------------------------------------------- H006 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 12 (rooted using default outgroup) Branch lengths and linkages for tree #12 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 20 2 2 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_20 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 13 (rooted using default outgroup) Branch lengths and linkages for tree #13 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 14 (rooted using default outgroup) Branch lengths and linkages for tree #14 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 15 (rooted using default outgroup) Branch lengths and linkages for tree #15 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 16 (rooted using default outgroup) Branch lengths and linkages for tree #16 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 17 (rooted using default outgroup) Branch lengths and linkages for tree #17 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 18 (rooted using default outgroup) Branch lengths and linkages for tree #18 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 0 0 1 19 20 2 2 2 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 1 0 1 H008 (4) 21 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------21 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 19 (rooted using default outgroup) Branch lengths and linkages for tree #19 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 20 (rooted using default outgroup) Branch lengths and linkages for tree #20 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 21 (rooted using default outgroup) Branch lengths and linkages for tree #21 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 22 (rooted using default outgroup) Branch lengths and linkages for tree #22 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 23 (rooted using default outgroup) Branch lengths and linkages for tree #23 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 2 22 23 0 0 1 H007 (3) 22 1 1 1 H011 (13) 22 0 0 0 H012 (10) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H001 | | | | /------19 \-------------------------------- H013 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_23 --> H012 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 24 (rooted using default outgroup) Branch lengths and linkages for tree #24 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 25 (rooted using default outgroup) Branch lengths and linkages for tree #25 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 23 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------22 \------------ H011 | | | | /------------ H008 | | /----------20 | | | \------------ H006 | \-----------------------------------21 | \------------------------ H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 26 (rooted using default outgroup) Branch lengths and linkages for tree #26 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 2 19 20 2 2 2 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------20 | | | \------------ H011 | | | \------------------------------------------------------------- H014 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 27 (rooted using default outgroup) Branch lengths and linkages for tree #27 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 2 18 20 2 2 2 17 18 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H007 | | | | \-----------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 28 (rooted using default outgroup) Branch lengths and linkages for tree #28 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 29 (rooted using default outgroup) Branch lengths and linkages for tree #29 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 1 19 20 2 2 2 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 0 0 0 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H014 (5) 22 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | +---------------- H001 | | | /------16 /-------- H003 | | +------15 | | | \-------- H005 | /------17 | | | | \---------------- H000 | | | | | \------------------------ H013 23 /-------18 | | +-------------------------------- H007 | | | | /------19 \-------------------------------- H011 | | | | /------20 \----------------------------------------- H012 | | | | /------21 \------------------------------------------------- H006 | | | +------22 \--------------------------------------------------------- H008 | | | \----------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 30 (rooted using default outgroup) Branch lengths and linkages for tree #30 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H012 | | | \--------------------------------------------------------------- H006 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 31 (rooted using default outgroup) Branch lengths and linkages for tree #31 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 20 21 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 22 2 2 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 32 (rooted using default outgroup) Branch lengths and linkages for tree #32 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 33 (rooted using default outgroup) Branch lengths and linkages for tree #33 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 34 (rooted using default outgroup) Branch lengths and linkages for tree #34 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H013 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H001 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 35 (rooted using default outgroup) Branch lengths and linkages for tree #35 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 36 (rooted using default outgroup) Branch lengths and linkages for tree #36 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | | | \------------ H011 +----------21 | | /------------ H008 | +-----------------------------------------------20 | | \------------ H006 | | | \------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 37 (rooted using default outgroup) Branch lengths and linkages for tree #37 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 2 2 2 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | | | \------------------------------------------------- H014 | | +----------19------------------------------------------------------------- H007 | | | +------------------------------------------------------------- H012 | | | \------------------------------------------------------------- H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 38 (rooted using default outgroup) Branch lengths and linkages for tree #38 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 22 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------21 | +---------------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 39 (rooted using default outgroup) Branch lengths and linkages for tree #39 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 2 2 2 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H007 (3) 20 1 0 1 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H012 | | | | /-------20 \---------------------------------------------- H011 | | | +-------21 \------------------------------------------------------- H007 | | | \---------------------------------------------------------------- H009 | | /--------- H008 \--------------------------------------------------------------22 \--------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_20 --> H007 12 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 40 (rooted using default outgroup) Branch lengths and linkages for tree #40 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 41 (rooted using default outgroup) Branch lengths and linkages for tree #41 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 42 (rooted using default outgroup) Branch lengths and linkages for tree #42 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 43 (rooted using default outgroup) Branch lengths and linkages for tree #43 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 2 19 20 2 2 2 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------22 \---------------------------------------------------- H014 | | | | /---------- H008 | \---------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 44 (rooted using default outgroup) Branch lengths and linkages for tree #44 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H014 (5) 22 2 2 2 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 Tree number 45 (rooted using default outgroup) Branch lengths and linkages for tree #45 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H014 (5) 22 2 1 2 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H006 \--------------------------------------------------22 \--------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 Tree number 46 (rooted using default outgroup) Branch lengths and linkages for tree #46 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 47 (rooted using default outgroup) Branch lengths and linkages for tree #47 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 2 2 2 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 0 0 0 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 21 2 2 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 21 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------20 | +--------------------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 48 (rooted using default outgroup) Branch lengths and linkages for tree #48 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 49 (rooted using default outgroup) Branch lengths and linkages for tree #49 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 50 (rooted using default outgroup) Branch lengths and linkages for tree #50 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 51 (rooted using default outgroup) Branch lengths and linkages for tree #51 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 2 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 2 20 21 2 0 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H007 | | | | \---------------------------------------------------20---------- H012 | | | \---------- H011 | | /---------- H008 +-------------------------------------------------------------22 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 52 (rooted using default outgroup) Branch lengths and linkages for tree #52 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 53 (rooted using default outgroup) Branch lengths and linkages for tree #53 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 54 (rooted using default outgroup) Branch lengths and linkages for tree #54 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | 25 /-------19 \------------------------------------- H001 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 55 (rooted using default outgroup) Branch lengths and linkages for tree #55 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 56 (rooted using default outgroup) Branch lengths and linkages for tree #56 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 57 (rooted using default outgroup) Branch lengths and linkages for tree #57 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 58 (rooted using default outgroup) Branch lengths and linkages for tree #58 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 59 (rooted using default outgroup) Branch lengths and linkages for tree #59 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 60 (rooted using default outgroup) Branch lengths and linkages for tree #60 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 61 (rooted using default outgroup) Branch lengths and linkages for tree #61 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 62 (rooted using default outgroup) Branch lengths and linkages for tree #62 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 63 (rooted using default outgroup) Branch lengths and linkages for tree #63 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 64 (rooted using default outgroup) Branch lengths and linkages for tree #64 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | 25 /---------19 \------------------------------------------ H013 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 65 (rooted using default outgroup) Branch lengths and linkages for tree #65 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 23 24 1 1 1 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 66 (rooted using default outgroup) Branch lengths and linkages for tree #66 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 67 (rooted using default outgroup) Branch lengths and linkages for tree #67 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 22 23 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 68 (rooted using default outgroup) Branch lengths and linkages for tree #68 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 69 (rooted using default outgroup) Branch lengths and linkages for tree #69 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | 25 /-------19 \------------------------------------- H013 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 70 (rooted using default outgroup) Branch lengths and linkages for tree #70 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 71 (rooted using default outgroup) Branch lengths and linkages for tree #71 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 72 (rooted using default outgroup) Branch lengths and linkages for tree #72 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 2 22 23 0 0 1 H007 (3) 22 1 1 1 H011 (13) 22 0 0 0 H012 (10) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H013 | | | | /------19 \-------------------------------- H001 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_23 --> H012 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 73 (rooted using default outgroup) Branch lengths and linkages for tree #73 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 2 H007 (3) 20 1 0 1 19 20 0 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 74 (rooted using default outgroup) Branch lengths and linkages for tree #74 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 75 (rooted using default outgroup) Branch lengths and linkages for tree #75 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 76 (rooted using default outgroup) Branch lengths and linkages for tree #76 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 77 (rooted using default outgroup) Branch lengths and linkages for tree #77 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H013 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 78 (rooted using default outgroup) Branch lengths and linkages for tree #78 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H001 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 79 (rooted using default outgroup) Branch lengths and linkages for tree #79 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 80 (rooted using default outgroup) Branch lengths and linkages for tree #80 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 81 (rooted using default outgroup) Branch lengths and linkages for tree #81 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 82 (rooted using default outgroup) Branch lengths and linkages for tree #82 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | 25 /---------19 \------------------------------------------ H001 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 83 (rooted using default outgroup) Branch lengths and linkages for tree #83 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 2 H007 (3) 20 1 0 1 19 20 0 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 84 (rooted using default outgroup) Branch lengths and linkages for tree #84 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 85 (rooted using default outgroup) Branch lengths and linkages for tree #85 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 86 (rooted using default outgroup) Branch lengths and linkages for tree #86 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 23 24 1 1 1 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 87 (rooted using default outgroup) Branch lengths and linkages for tree #87 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 22 23 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 88 (rooted using default outgroup) Branch lengths and linkages for tree #88 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 89 (rooted using default outgroup) Branch lengths and linkages for tree #89 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 altree-v1.3.1/test/paup/unrooted_present/association/run_altree0000755000175000017500000000061012043315246025236 0ustar vdanjeanvdanjean#!/bin/sh -x # to run paup paup caco.paup # to perform the association test. # only one permutation is done: the corrected p_value doesn't mean # anything! # the --outgroup option is specified because the tree must be rooted for # the association test ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ --outgroup H000 -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso altree-v1.3.1/test/paup/unrooted_present/association/test.tree0000644000175000017500000002545512043315246025026 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Tue Jan 10 20:35:47 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/non_enracine_present/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90406 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H014),H009,H006)); tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H014),H006),H009)); tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H014),H006),H009)); tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),((H008,H014),H006)),H009)); tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H014)),H009,H006)); tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H008,H014),H009,H006)); tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H006),H009)); tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H014),H006))); tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H006),H014),H009)); tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014)),H009)); tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H006),H014,H009)); tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_14 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_15 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_16 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_17 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_18 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H009,H006)); tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_21 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_22 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_24 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_25 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),((H008,H006),H014)),H009)); tree PAUP_26 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006),H009)); tree PAUP_27 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_28 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_29 = [&U] (H002,((((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),H008),H014),H009)); tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014),H009)); tree PAUP_31 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H006)),H014,H009)); tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),(H008,H006)),H009)); tree PAUP_33 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_34 = [&U] (H002,(((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_35 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H014),H006)); tree PAUP_36 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H006),H014),H009)); tree PAUP_37 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H007,H012,H011),(H008,H006),H009)); tree PAUP_38 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),H008,H006),H009)); tree PAUP_39 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H012,H011),H007),H009),(H008,H006))); tree PAUP_40 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_41 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_42 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_43 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006)),H009)); tree PAUP_44 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H006),H014)); tree PAUP_45 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H006),H014))); tree PAUP_46 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H008,H006),H014,H009)); tree PAUP_48 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_49 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_50 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_51 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_52 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_53 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_54 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_57 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_58 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_59 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_60 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_61 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_62 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_63 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_64 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_65 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_66 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_67 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_68 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_69 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_70 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_71 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_72 = [&U] (H002,((((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_73 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_74 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_75 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_76 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_77 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_78 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_79 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_81 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_82 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_83 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_84 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_85 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_86 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_87 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_88 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_89 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009)); End; altree-v1.3.1/test/paup/unrooted_present/association/caco.paup0000644000175000017500000000201612043315246024746 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 [H004 222222222222] H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 H000 222222222222 ; end; begin assumptions; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/unrooted_present/association/nb_cas_control.txt0000644000175000017500000000033012043315246026675 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 H000 m098 c126 altree-v1.3.1/test/paup/unrooted_present/association/1_caco.asso0000644000175000017500000000421312043315246025167 0ustar vdanjeanvdanjean /----* H010 case/control:7/5 | Site: 5 Sens: 2-->1 |----* H001 case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 | /----* H003 case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 15 case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 case/control:7/7 | Site: 12 Sens: 2-->1 -----* 16 case/control:200/200 | | [0] ddl=4 chi2=9.33 p_value_chi2=0.0535 | [1] ddl=6 chi2=11.24 p_value_chi2=0.065 | [2] ddl=9 chi2=23.55 p_value_chi2=0.004 | [3] ddl=12 chi2=25.20 p_value_chi2=0.009 | [4] ddl=13 chi2=25.55 p_value_chi2=0.01 |----* H000 case/control:98/126 | /----* H013 case/control:2/4 \----* 17 case/control:72/47 | Site: 6 Sens: 2-->1 | Site: 7 Sens: 2-->1 | /----* H007 case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 case/control:1/4 | | Site: 11 Sens: 2-->1 \----* 18 case/control:70/43 | Site: 8 Sens: 2-->1 | Site: 9 Sens: 2-->1 | Site: 10 Sens: 2-->1 |----* H011 case/control:5/1 | /----* H002 case/control:8/6 | | /----* H008 case/control:9/2 | | | Site: 11 Sens: 2-->1 | |----* 19 case/control:13/4 | | | Site: 9 Sens: 1-->2 | | \----* H014 case/control:4/2 | | Site: 10 Sens: 1-->2 \----* 20 case/control:57/25 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 |----* H009 case/control:8/2 | Site: 12 Sens: 2-->1 \----* H006 case/control:28/13 Site: 11 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 altree-v1.3.1/test/paup/ancestor_present/0000755000175000017500000000000012252703410020612 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/ancestor_present/localisation/0000755000175000017500000000000012252703410023273 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/ancestor_present/localisation/test.res.log0000644000175000017500000171306612043315246025567 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Thu Jan 12 21:57:28 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "anc" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------21 | | /---------- H003 | +----------------------------------------20 | | \---------- H005 ---------22 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 | | /-------17 \--------- H011 | | | | /--------- H008 | +-------16 /--------18 | \--------- H006 | | | | | \------------------ H009 /-------19 | | | \--------------------------- H014 | | /-------20 \------------------------------------- H013 | | | \---------------------------------------------- H001 | /-------22 /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 3 16 17 3 0 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H009 | | | \--------------------------- H014 /-------19 | | /--------- H007 | | | | \--------------------------18--------- H012 /-------20 | | | \--------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------- H002 | /-----16 /------- H008 | \------15 /-----17 \------- H006 | | /-----18 \---------------------- H009 | | | \----------------------------- H007 /------19 | +------------------------------------ H012 | | /-----20 \------------------------------------ H011 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 | /--------17--------------------------- H007 | | | +--------------------------- H012 /-------18 | | | \--------------------------- H011 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | | \----------------------------------------------------- H013 | +------------------------------------------------------------ H001 /----24 | | /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9) 20 0 0 0 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------------- H002 | | /---------- H008 +---------15 /--------16 \---------- H006 | | | +--------------------- H014 | | | \--------------------- H009 /---------17 | +------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------20 | | /---------- H003 | +----------------------------------------19 | | \---------- H005 ---------21 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | | \------------------------------------------ H001 | +---------------------------------------------------- H013 /---------21 | | /---------- H003 | +----------------------------------------20 | | \---------- H005 ---------22 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 | | /-------17 \--------- H011 | | | | /--------- H008 | +-------16 /--------18 | \--------- H006 | | | | | \------------------ H009 /-------19 | | | \--------------------------- H014 | | /-------20 \------------------------------------- H001 | | | \---------------------------------------------- H013 | /-------22 /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------- H002 | | /-------- H008 /------16------15 | | \-------- H006 | | | \---------------- H009 /------18 | | /-------- H007 | | | | \--------------17-------- H012 /-------19 | | | \-------- H011 | | /------20 \-------------------------------- H014 | | /------21 \----------------------------------------- H013 | | | \------------------------------------------------- H001 | /------23 /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 | | /------18 \---------------- H009 | | | | /-------- H008 /-------19 \--------------17 | | \-------- H006 | | /------20 \-------------------------------- H014 | | /------21 \----------------------------------------- H013 | | | \------------------------------------------------- H001 | /------23 /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------- H002 | | /------- H007 | | /-----16------15------- H012 | | | | | \------- H011 /-----17 | | | \--------------- H009 | | /-----18 \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------23 /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 | /-----16 /-----19 | \--------------- H012 | +-----18 | | | /------- H008 | | \-------------17 /------20 | \------- H006 | | | | | \----------------------------- H009 /-----21 | | | \------------------------------------ H014 | | /-----22 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 | /-----16 /-----18 | \--------------- H012 | | | | +-----17---------------------- H008 | | | /------19 | \---------------------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------23 /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 | | \------15 /-----19-----17 \------- H011 | | | | | \---------------------- H009 | | /------20 | /------- H008 | | \--------------------18 | | \------- H006 /-----21 | | | \------------------------------------ H014 | | /-----22 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /------15 | \-------- H009 /------17 | | /-------- H008 | \------16 /------18 \-------- H006 | | | \------------------------ H012 /-------19 | +-------------------------------- H007 | | /------20 \-------------------------------- H011 | | /------21 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 3 17 18 2 0 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H014 /-------20 | | /--------- H007 | | | | \--------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------23 | | /--------- H003 | +--------------------------------------------22 | | \--------- H005 --------24 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /------15 | \-------- H009 | /------16---------------- H008 | | /------17 \---------------- H006 | | | \------------------------ H012 /-------18 | +-------------------------------- H007 | | /------19 \-------------------------------- H011 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 3 17 18 2 0 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H006 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H014 | /------20 /-------- H007 | | | | \-------------------------------19-------- H012 /------21 | | | \-------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------------------- H002 | | /--------- H008 | /-------15 /--------17 | \--------- H006 | +-------16 | | \------------------ H014 | | | \--------------------------- H009 /-------18 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------19 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------------------- H002 | | /--------- H008 | /-------15 /--------17 | \--------- H014 | +-------16 | | \------------------ H006 | | | \--------------------------- H009 /-------18 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------19 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | +------15-------- H012 /------16 | | | \-------- H011 | | | +---------------- H009 /------17 | | | \---------------- H006 | | /-------18 \------------------------ H008 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 | /------22 /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H006 | | | \--------------------- H014 /---------19 | | /---------- H007 | | | | \-------------------18---------- H012 /--------20 | | | \---------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------22 | | /---------- H003 | +----------------------------------------21 | | \---------- H005 ---------23 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----20 | | | \-------------------- H009 | | | | /------- H008 /----21 \------------------------19 | | \------- H006 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /------------------------15 | \------- H009 | | /------- H007 | /----16 /-----20 | \------- H011 | | /-----17 | | | \------------- H012 | | /-----18 /----21 | | \-------------------- H006 | | \----19 | | \--------------------------- H008 /-----22 | | | \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------- H002 | | /-------- H008 /------16------15 | | \-------- H006 | | /------17 \---------------- H014 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 | | \------15 /-----19-----17 \------- H011 | | | | | \---------------------- H009 | | /------20 | /------- H008 | | \--------------------18 | | \------- H006 /-----21 | | | \------------------------------------ H014 | | /-----22 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 | /-------15--------- H014 | | | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 3 3 3 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H006 | \-------17 /-------20 \------------------ H014 | | | | /--------- H007 | | | /-------21 \--------------------------19--------- H012 | | | | | \--------- H011 | | | \---------------------------------------------- H013 | /-------23------------------------------------------------------- H001 | | | | /--------- H003 | +--------------------------------------------22 --------24 | \--------- H005 | | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 3 16 17 2 0 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 | /-------15--------- H009 | | /-------16 \--------- H006 | | /--------17 \------------------ H008 | | | \--------------------------- H014 /-------19 | | /--------- H007 | | | | \--------------------------18--------- H012 /-------20 | | | \--------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------- H002 | /---------15---------- H009 | | | \---------- H006 /--------17 | | /---------- H008 | \---------16 | \---------- H014 /---------19 | | /---------- H007 | | | | \-------------------18---------- H012 /--------20 | | | \---------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------22 | | /---------- H003 | +----------------------------------------21 | | \---------- H005 ---------23 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------- H002 | /---------15---------- H009 | | | \---------- H006 /--------16 | +--------------------- H008 | | | \--------------------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------21 | | /---------- H003 | +----------------------------------------20 | | \---------- H005 ---------22 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 | /-------15--------- H014 | | | \--------- H009 /-------16 | +------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 | /-----16 /-----19 | \--------------- H012 | +-----18 | | | /------- H008 | | \-------------17 /------20 | \------- H006 | | | | | \----------------------------- H009 /-----21 | | | \------------------------------------ H014 | | /-----22 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------------- H002 | | /------- H008 /-----17 /------15 | | | \------- H006 | \-----16 /-----18 \--------------- H014 | | /------19 \----------------------------- H009 | | | \------------------------------------ H007 /-----20 | +-------------------------------------------- H012 | | /-----21 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----20 | | | \-------------------- H009 | | | | /------- H008 /----21 \------------------------19 | | \------- H006 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------------- H002 | | /------- H008 /-----17 /------15 | | | \------- H014 | \-----16 /-----18 \--------------- H006 | | /------19 \----------------------------- H009 | | | \------------------------------------ H007 /-----20 | +-------------------------------------------- H012 | | /-----21 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | | \----------------------------------------------------- H001 | +------------------------------------------------------------ H013 /----24 | | /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------------ H002 | | /------------ H007 /----18 | | | /----16 /------ H012 | | | \----15 | \----17 \------ H011 /----19 | | | \------------------ H009 | | /-----20 \------------------------------ H006 | | /----21 \------------------------------------ H008 | | /----22 \------------------------------------------- H014 | | /----23 \------------------------------------------------- H013 | | | \------------------------------------------------------- H001 | /----25 /------ H003 | +-----------------------------------------------------24 | | \------ H005 -----26 | | \------------------------------------------------------------- H000 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------------ H002 | | /------------ H007 /----18 | | | /----16 /------ H012 | | | \----15 | \----17 \------ H011 /----19 | | | \------------------ H009 | | /-----20 \------------------------------ H006 | | /----21 \------------------------------------ H008 | | /----22 \------------------------------------------- H014 | | /----23 \------------------------------------------------- H001 | | | \------------------------------------------------------- H013 | /----25 /------ H003 | +-----------------------------------------------------24 | | \------ H005 -----26 | | \------------------------------------------------------------- H000 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 3 3 3 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /------- H002 /------15 | \------- H009 /-----16 | \--------------- H014 /-----17 | \---------------------- H008 /-----18 | \----------------------------- H006 /------19 | \------------------------------------ H012 | /-----20-------------------------------------------- H007 | | /-----21 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9) 20 0 0 0 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------------- H002 | | /---------- H008 +---------15 /--------16 \---------- H014 | | | +--------------------- H009 | | | \--------------------- H006 /---------17 | +------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------20 | | /---------- H003 | +----------------------------------------19 | | \---------- H005 ---------21 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | | \---------------------------------------------- H001 | +------------------------------------------------------- H013 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 | /-----16 /-----18 | \--------------- H012 | | | | +-----17---------------------- H008 | | | /------19 | \---------------------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------23 /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 | | /------18 \---------------- H009 | | | | /-------- H008 /-------19 \--------------17 | | \-------- H006 | | /------20 \-------------------------------- H014 | | /------21 \----------------------------------------- H001 | | | \------------------------------------------------- H013 | /------23 /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | +------15-------- H012 /------16 | | | \-------- H011 | | | +---------------- H009 /------17 | | | \---------------- H006 | | /-------18 \------------------------ H008 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H001 | | | \------------------------------------------------- H013 | /------22 /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H001 | +------------------------------------------------------- H013 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-----------15 | \------- H009 | /-----18 /------- H007 | | /----16 | | | \------- H011 /----19 \-----17 | | \------------- H012 | | /-----20 \--------------------------- H006 | | /----21 \--------------------------------- H008 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------- H007 | /----15 | | \------- H011 /----18 /-----16 | | | \------------- H012 | +-----17 | | \-------------------- H006 /-----19 | | | \--------------------------- H009 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----24 /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------- H002 | | /------- H007 | | /-----16------15------- H012 | | | | | \------- H011 /-----17 | | | \--------------- H009 | | /-----18 \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------23 /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /------------------15 | \------- H009 | | /------- H007 /----19 /----16 | | | \------- H011 | | /-----17 | | | \------------- H012 /-----20 \-----18 | | \-------------------- H006 | | /----21 \--------------------------------- H008 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-------------15 | \------- H009 | | /------- H007 | /------16 /-----18 | \------- H011 | +-----17 | | \--------------- H012 /-----19 | | | \---------------------- H006 | | /------20 \----------------------------- H008 | | /-----21 \------------------------------------ H014 | | /-----22 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 | | | /-----16 /------- H012 /----18 | \----15 | +-----17 \------- H011 | | | | | \-------------------- H009 /-----19 | | | \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----24 /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H008 | | /------16 | | | \-------- H014 /-------19 \------17 | | \---------------- H006 | | | \-------------------------------- H012 /------20 | +----------------------------------------- H007 | | /------21 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /------15 | \-------- H009 /------17 | | /-------- H008 | \------16 /------18 \-------- H014 | | /-------19 \------------------------ H006 | | | \-------------------------------- H012 /------20 | +----------------------------------------- H007 | | /------21 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 /-------15 | \--------- H009 | | /--------- H008 /-------17-------16 | | \--------- H014 | | /--------18 \------------------ H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /------------------------15 | \------- H009 | | /------- H007 | /----16 /-----20 | \------- H011 | | /-----17 | | | \------------- H012 | | /-----18 /----21 | | \-------------------- H006 | | \----19 | | \--------------------------- H008 /-----22 | | | \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 | | | /-----16 /------- H012 /----18 | \----15 | +-----17 \------- H011 | | | | | \-------------------- H009 /-----19 | | | \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----24 /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------- H002 | | /-------- H008 /------16------15 | | \-------- H014 | | /------17 \---------------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------- H002 | | /-------- H008 /------16------15 | | \-------- H014 | | /------17 \---------------- H009 | | /-------18 \------------------------ H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-----------15 | \------- H009 | /-----18 /------- H007 | | /----16 | | | \------- H011 /----19 \-----17 | | \------------- H012 | | /-----20 \--------------------------- H006 | | /----21 \--------------------------------- H008 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /------------------15 | \------- H009 | | /------- H007 /----19 /----16 | | | \------- H011 | | /-----17 | | | \------------- H012 /-----20 \-----18 | | \-------------------- H006 | | /----21 \--------------------------------- H008 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------- H007 | /----15 | | \------- H011 /----18 /-----16 | | | \------------- H012 | +-----17 | | \-------------------- H006 /-----19 | | | \--------------------------- H009 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----24 /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-------------15 | \------- H009 | | /------- H007 | /------16 /-----18 | \------- H011 | +-----17 | | \--------------- H012 /-----19 | | | \---------------------- H006 | | /------20 \----------------------------- H008 | | /-----21 \------------------------------------ H014 | | /-----22 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 altree-v1.3.1/test/paup/ancestor_present/localisation/caco.loc0000644000175000017500000000214512043315246024705 0ustar vdanjeanvdanjeanLocalisation method using S-character Results: site number 7 sens 1-->2 V_i = 3.47439614486152 site number 11 sens 2-->1 V_i = 0 site number 12 sens 2-->1 V_i = 0 site number 3 sens 2-->1 V_i = 0 site number 8 sens 2-->1 V_i = 0 site number 7 sens 2-->1 V_i = 0 site number 4 sens 2-->1 V_i = 0 site number 10 sens 2-->1 V_i = 0 site number 13 sens 0-->1 V_i = 0 site number 5 sens 2-->1 V_i = 0 site number 9 sens 1-->2 V_i = -0.267261241912424 site number 8 sens 1-->2 V_i = -0.267261241912424 site number 1 sens 2-->1 V_i = -0.267261241912424 site number 4 sens 1-->2 V_i = -0.267261241912424 site number 3 sens 1-->2 V_i = -0.267261241912424 site number 10 sens 1-->2 V_i = -0.267261241912424 site number 9 sens 2-->1 V_i = -0.267261241912424 site number 2 sens 2-->1 V_i = -0.267261241912424 site number 5 sens 1-->2 V_i = -0.267261241912424 site number 11 sens 1-->2 V_i = -0.377964473009227 site number 1 sens 1-->2 V_i = -0.377964473009227 site number 2 sens 1-->2 V_i = -0.377964473009227 site number 12 sens 1-->2 V_i = -0.462910049886276 site number 13 sens 1-->0 V_i = -0.462910049886276 altree-v1.3.1/test/paup/ancestor_present/localisation/test.tree0000644000175000017500000002555112043315246025147 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Thu Jan 12 21:57:28 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_present/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.11 sec) ] tree PAUP_1 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_2 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_3 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_4 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_5 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_6 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_7 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_8 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_9 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_10 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_11 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_13 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_14 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_16 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_17 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_19 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_20 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_21 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_22 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_23 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_24 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_25 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_26 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_27 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_28 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_29 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_30 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_32 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_33 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_34 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_35 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_36 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_37 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_38 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_40 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_41 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_42 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_43 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_44 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_45 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_46 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_47 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_48 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_49 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_50 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_51 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_52 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_53 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_54 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_55 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_56 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_57 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_58 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_59 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_60 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_61 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_63 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_64 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_65 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_66 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_67 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_68 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_69 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_70 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_71 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_72 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_73 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_74 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_75 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_76 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_77 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_78 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_79 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_80 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_81 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_82 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_83 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_84 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_85 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_86 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_87 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_88 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_89 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005),H000),H010); End; altree-v1.3.1/test/paup/ancestor_present/localisation/et_caco.paup0000644000175000017500000000220612043315246025563 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 222221122222? H001 112222222222? H003 221122222222? H000 2222222222220 H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; ancstates *anc vector = 222222222222?; end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/ancestor_present/localisation/caco.paup0000644000175000017500000000211612043315246025073 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; ancstates *anc vector = 222222222222; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/ancestor_present/localisation/nb_cas_control.txt0000644000175000017500000000032212043315246027022 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H000 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/ancestor_present/localisation/run-prog0000755000175000017500000000070312043315246024776 0ustar vdanjeanvdanjean#!/bin/sh -x # To optain the paup input file containing the S character ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.5 # To run paup paup et_caco.paup # To perform the localisation test on the 89 equiparsimonious trees ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l > caco.loc altree-v1.3.1/test/paup/ancestor_present/association/0000755000175000017500000000000012252703410023126 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/ancestor_present/association/test.res.log0000644000175000017500000000574712043315246025421 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Wed May 31 14:29:51 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 7 Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 7 total characters: All characters are of type 'unord' All characters have equal weight 1 character is constant 5 variable characters are parsimony-uninformative Number of parsimony-informative characters = 1 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H003 (1) 6 1 1 1 5 6 1 1 2 H004 (2) 5 3 3 3 H002 (3) 5 1 0 1 H001 (4) 6 0 0 1 ------------------------------------------------------------------------- Sum 6 Tree length = 6 Consistency index (CI) = 1.0000 Homoplasy index (HI) = 0.0000 CI excluding uninformative characters = 1.0000 HI excluding uninformative characters = 0.0000 Retention index (RI) = 1.0000 Rescaled consistency index (RC) = 1.0000 /------------------------- H003 | | /------------------------------------------------------------------------- H004 6------------------------5 | \------------------------ H002 | \ H001 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_6 --> H003 2 1 1.000 2 ==> 1 node_6 --> node_5 1 1 1.000 1 ==> 2 node_5 --> H004 4 1 1.000 1 ==> 2 5 1 1.000 1 ==> 2 6 1 1.000 2 ==> 1 node_5 --> H002 7 1 1.000 0 --> 1 altree-v1.3.1/test/paup/ancestor_present/association/run_altree0000755000175000017500000000076312043315246025226 0ustar vdanjeanvdanjean#!/bin/sh -x #To run paup: paup caco.paup # To perform the association test (on the forst tree found in the file #test.res.log ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso # To perform the association test without the permutation test (using # a theshold for the chi2) #../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ #-p paup --tree-to-analyse 1 --chi2-threshold 0.05 -r 0 \ #-o 1_caco.asso altree-v1.3.1/test/paup/ancestor_present/association/test.tree0000644000175000017500000002545212043315246025002 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Thu Feb 16 14:04:23 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_present/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_2 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_3 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_4 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_5 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_6 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_7 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_8 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_9 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_10 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_11 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_13 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_14 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_16 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_17 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_19 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_20 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_21 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_22 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_23 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_24 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_25 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_26 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_27 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_28 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_29 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_30 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_32 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_33 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_34 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_35 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_36 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_37 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_38 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_40 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_41 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_42 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_43 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_44 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_45 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_46 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_47 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_48 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_49 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_50 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_51 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_52 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_53 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_54 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_55 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_56 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_57 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_58 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_59 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_60 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_61 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_63 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_64 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_65 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_66 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_67 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_68 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_69 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_70 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_71 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_72 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_73 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_74 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_75 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_76 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_77 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_78 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_79 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_80 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_81 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_82 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_83 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_84 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_85 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_86 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_87 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_88 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_89 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005),H000),H010); End; altree-v1.3.1/test/paup/ancestor_present/association/caco.paup0000644000175000017500000000211612043315246024726 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; ancstates *anc vector = 222222222222; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/ancestor_present/association/nb_cas_control.txt0000644000175000017500000000040212043315246026654 0ustar vdanjeanvdanjeanH002 m008 c006 # ceci est un commentaire ; cici aussi H010 cases_007 c005 H007 m_007 c013 H008 case009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H000 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/ancestor_present/association/1_caco.asso0000644000175000017500000000662512043315246025157 0ustar vdanjeanvdanjean /----* H002 (LEVEL: 4) case/control:8/6 | /----* H007 (LEVEL: 5) case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 (LEVEL: 5) case/control:1/4 | | Site: 11 Sens: 2-->1 |----* 15 (LEVEL: 4) case/control:13/18 | | Site: 1 Sens: 1-->2 | | Site: 2 Sens: 1-->2 | \----* H011 (LEVEL: 5) case/control:5/1 /----* 17 (LEVEL: 3) case/control:66/41 | | Site: 10 Sens: 2-->1 | | Site: 9 Sens: 2-->1 | | /----* H008 (LEVEL: 5) case/control:9/2 | | | Site: 9 Sens: 1-->2 | |----* 16 (LEVEL: 4) case/control:37/15 | | | Site: 11 Sens: 2-->1 | | \----* H006 (LEVEL: 5) case/control:28/13 | \----* H009 (LEVEL: 4) case/control:8/2 | Site: 12 Sens: 2-->1 /----* 18 (LEVEL: 2) case/control:70/43 | | Site: 8 Sens: 2-->1 | | Site: 1 Sens: 2-->1 | | Site: 2 Sens: 2-->1 | \----* H014 (LEVEL: 3) case/control:4/2 /----* 19 (LEVEL: 1) case/control:72/47 | | Site: 6 Sens: 2-->1 | | Site: 7 Sens: 2-->1 | \----* H013 (LEVEL: 2) case/control:2/4 |----* H001 (LEVEL: 1) case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 | /----* H003 (LEVEL: 2) case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 20 (LEVEL: 1) case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 (LEVEL: 2) case/control:7/7 | Site: 12 Sens: 2-->1 -----* 22+(21) (LEVEL: 0) case/control:200/200 | | [0] ddl=4 chi2=9.33 p_value_chi2=0.0535 | [1] ddl=6 chi2=11.24 p_value_chi2=0.07 | [2] ddl=7 chi2=11.30 p_value_chi2=0.112 | [3] ddl=10 chi2=19.46 p_value_chi2=0.029 | [4] ddl=13 chi2=25.55 p_value_chi2=0.015 |----* H000 (LEVEL: 1) case/control:98/126 \----* H010 (LEVEL: 1) case/control:7/5 Site: 5 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 /----* H003 (LEVEL: 2) case/control:12/15 /----* 6 (LEVEL: 1) case/control:54/40 | | Site: 2 Sens: 2-->1 | \----* H005 (LEVEL: 2) case/control:42/25 | Site: 5 Sens: 1-->2 |----* H001 (LEVEL: 1) case/control:9/18 -----* 9+(7) (LEVEL: 0) case/control:71/79 | | [0] ddl=2 chi2=10.52 p_value_chi2=0.00521 | [1] ddl=4 chi2=13.26 p_value_chi2=0.009 | /----* H004 (LEVEL: 2) case/control:5/15 | | Site: 6 Sens: 2-->1 | | Site: 4 Sens: 1-->2 | | Site: 5 Sens: 1-->2 \----* 8 (LEVEL: 1) case/control:8/21 | Site: 1 Sens: 1-->2 \----* H002 (LEVEL: 2) case/control:3/6 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 La pmin minimale est 0 ############################################ p_value for the 2 files = 0 altree-v1.3.1/test/paup/outgr_present/0000755000175000017500000000000012252703410020134 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/outgr_present/localisation/0000755000175000017500000000000012252703410022615 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/outgr_present/localisation/test.res.log0000644000175000017500000166627712043315246025124 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Tue Jan 10 21:29:10 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "standard" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H013 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 3 16 17 3 0 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | /---------17 \--------------------- H009 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | /------16 /-------- H008 | \------15 /------17 \-------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 | /---------17------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H001 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H006 | | | +------------------------ H014 | | | \------------------------ H009 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H001 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H013 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H001 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 3 17 18 2 0 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------15 | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H014 /--------20 | | /---------- H007 | | | | \------------------------------19---------- H012 /---------21 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------23--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 | /-------16------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 3 17 18 2 0 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------16 | \------------------ H006 /--------17 | \--------------------------- H008 /-------18 | \------------------------------------- H014 | /-------20 /--------- H007 | | | | \-----------------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H006 | +--------16 | | \--------------------- H014 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H014 | +--------16 | | \--------------------- H006 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 /----------15 | \------------ H009 | | /------------ H008 /----------17----------16 | | \------------ H006 | | | \------------------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H014 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 3 3 3 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /-------------------15 | \---------- H009 | /---------18 /---------- H008 | | /---------16 | | | \---------- H006 | \--------17 /--------20 \--------------------- H014 | | | | /---------- H007 | | | /---------21 \------------------------------19---------- H012 | | | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------23 +--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 3 16 17 2 0 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H009 | | /--------16 \---------- H006 | | /---------17 \--------------------- H008 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------17 | | /------------ H008 | \----------16 | \------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------16 | +------------------------ H008 | | | \------------------------ H014 /-----------18 | | /------------ H007 | | | | \----------------------17------------ H012 /----------19 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------16 | +--------------------- H008 | | /---------17 \--------------------- H006 | | | \------------------------------- H012 /--------18 | +------------------------------------------ H007 | | /---------19 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H006 | \------16 /-------18 \---------------- H014 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H014 | \------16 /-------18 \---------------- H006 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H013 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H013 | | | \------------------------------------------------------------ H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H001 | | | \------------------------------------------------------------ H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 3 3 3 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H014 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H006 /------19 | \----------------------------------------- H012 | /------20------------------------------------------------- H007 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H014 | | | +------------------------ H009 | | | \------------------------ H006 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H014 /-------19 \-------17 | | \------------------ H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H014 | | /-------19 \--------------------------- H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H014 | | /---------18 \--------------------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H009 | | /-------18 \--------------------------- H006 | | | \------------------------------------- H012 /-------19 | +---------------------------------------------- H007 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 altree-v1.3.1/test/paup/outgr_present/localisation/caco.loc0000644000175000017500000000237212043315246024231 0ustar vdanjeanvdanjeanLocalisation method using S-character Results: site number 10 sens 2-->1 V_i = 3.32820117735137 site number 11 sens 1-->2 V_i = 0.792593923901217 site number 12 sens 1-->2 V_i = 0.792593923901217 site number 4 sens 2-->1 V_i = -0.277350098112615 site number 5 sens 2-->1 V_i = -0.277350098112615 site number 3 sens 2-->1 V_i = -0.277350098112615 site number 9 sens 2-->1 V_i = -0.277350098112615 site number 8 sens 2-->1 V_i = -0.277350098112615 site number 6 sens 2-->1 V_i = -0.392232270276368 site number 8 sens 1-->2 V_i = -0.392232270276368 site number 7 sens 2-->1 V_i = -0.392232270276368 site number 4 sens 1-->2 V_i = -0.392232270276368 site number 3 sens 1-->2 V_i = -0.392232270276368 site number 10 sens 1-->2 V_i = -0.392232270276368 site number 9 sens 1-->2 V_i = -0.392232270276368 site number 5 sens 1-->2 V_i = -0.392232270276368 site number 11 sens 2-->1 V_i = -0.480384461415261 site number 2 sens 2-->1 V_i = -0.480384461415261 site number 12 sens 2-->1 V_i = -0.480384461415261 site number 2 sens 1-->2 V_i = -0.480384461415261 site number 1 sens 2-->1 V_i = -0.480384461415261 site number 1 sens 1-->2 V_i = -0.480384461415261 site number 7 sens 1-->2 V_i = -0.554700196225229 site number 6 sens 1-->2 V_i = -0.554700196225229 altree-v1.3.1/test/paup/outgr_present/localisation/test.tree0000644000175000017500000002526412043315246024472 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Tue Jan 10 21:29:10 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_present/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005)); tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005)); tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005)); tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005)); tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005)); tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005)); tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005)); End; altree-v1.3.1/test/paup/outgr_present/localisation/et_caco.paup0000644000175000017500000000221212043315246025102 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 222221122222? H001 112222222222? H003 221122222222? H000 2222222222220 H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; [ancstates *anc vector = 2222222222221?;] end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/outgr_present/localisation/caco.paup0000644000175000017500000000212212043315246024412 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; [ancstates *anc vector = 2222222222221;] end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/outgr_present/localisation/nb_cas_control.txt0000644000175000017500000000032212043315246026344 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H000 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/outgr_present/localisation/run-prog0000755000175000017500000000070412043315246024321 0ustar vdanjeanvdanjean#!/bin/sh -x # To optain the paup input file containing the S character ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.5 # To run paup paup et_caco.paup # To perform the localisation test on the 89 equiparsimonious trees ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc altree-v1.3.1/test/paup/outgr_present/association/0000755000175000017500000000000012252703410022450 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/outgr_present/association/test.res.log0000644000175000017500000163345712043315246024751 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Tue Jan 10 21:04:10 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "standard" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H013 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 2 16 17 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | /---------17 \--------------------- H009 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | /------16 /-------- H008 | \------15 /------17 \-------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 | /---------17------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H001 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H006 | | | +------------------------ H014 | | | \------------------------ H009 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H001 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H013 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H001 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 2 17 18 1 0 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------15 | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H014 /--------20 | | /---------- H007 | | | | \------------------------------19---------- H012 /---------21 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------23--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 0 0 0 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 | /-------16------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 2 17 18 1 0 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------16 | \------------------ H006 /--------17 | \--------------------------- H008 /-------18 | \------------------------------------- H014 | /-------20 /--------- H007 | | | | \-----------------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H006 | +--------16 | | \--------------------- H014 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H014 | +--------16 | | \--------------------- H006 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 /----------15 | \------------ H009 | | /------------ H008 /----------17----------16 | | \------------ H006 | | | \------------------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H014 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 2 2 2 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /-------------------15 | \---------- H009 | /---------18 /---------- H008 | | /---------16 | | | \---------- H006 | \--------17 /--------20 \--------------------- H014 | | | | /---------- H007 | | | /---------21 \------------------------------19---------- H012 | | | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------23 +--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 2 16 17 1 0 1 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H009 | | /--------16 \---------- H006 | | /---------17 \--------------------- H008 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------17 | | /------------ H008 | \----------16 | \------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------16 | +------------------------ H008 | | | \------------------------ H014 /-----------18 | | /------------ H007 | | | | \----------------------17------------ H012 /----------19 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------16 | +--------------------- H008 | | /---------17 \--------------------- H006 | | | \------------------------------- H012 /--------18 | +------------------------------------------ H007 | | /---------19 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H006 | \------16 /-------18 \---------------- H014 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H014 | \------16 /-------18 \---------------- H006 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H013 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H013 | | | \------------------------------------------------------------ H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H001 | | | \------------------------------------------------------------ H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H014 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H006 /------19 | \----------------------------------------- H012 | /------20------------------------------------------------- H007 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H014 | | | +------------------------ H009 | | | \------------------------ H006 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H014 /-------19 \-------17 | | \------------------ H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H014 | | /-------19 \--------------------------- H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H014 | | /---------18 \--------------------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H009 | | /-------18 \--------------------------- H006 | | | \------------------------------------- H012 /-------19 | +---------------------------------------------- H007 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 altree-v1.3.1/test/paup/outgr_present/association/run_altree0000755000175000017500000000030612043315246024541 0ustar vdanjeanvdanjean#!/bin/sh -x # To run paup paup caco.paup # To perform the association test ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso altree-v1.3.1/test/paup/outgr_present/association/test.tree0000644000175000017500000002516412043315246024324 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Tue Jan 10 21:04:10 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_present/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005)); tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005)); tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005)); tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005)); tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005)); tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005)); tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005)); End; altree-v1.3.1/test/paup/outgr_present/association/caco.paup0000644000175000017500000000212212043315246024245 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; [ancstates *anc vector = 2222222222221;] end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/outgr_present/association/nb_cas_control.txt0000644000175000017500000000032212043315246026177 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H000 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/outgr_present/association/1_caco.asso0000644000175000017500000000434412043315246024475 0ustar vdanjeanvdanjean /----* H002 case/control:8/6 | /----* H007 case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 case/control:1/4 | | Site: 11 Sens: 2-->1 |----* 15 case/control:13/18 | | Site: 1 Sens: 1-->2 | | Site: 2 Sens: 1-->2 | \----* H011 case/control:5/1 /----* 17 case/control:66/41 | | Site: 10 Sens: 2-->1 | | Site: 9 Sens: 2-->1 | | /----* H008 case/control:9/2 | | | Site: 9 Sens: 1-->2 | |----* 16 case/control:37/15 | | | Site: 11 Sens: 2-->1 | | \----* H006 case/control:28/13 | \----* H009 case/control:8/2 | Site: 12 Sens: 2-->1 /----* 18 case/control:70/43 | | Site: 8 Sens: 2-->1 | | Site: 1 Sens: 2-->1 | | Site: 2 Sens: 2-->1 | \----* H014 case/control:4/2 /----* 19 case/control:72/47 | | Site: 6 Sens: 2-->1 | | Site: 7 Sens: 2-->1 | \----* H013 case/control:2/4 |----* H010 case/control:7/5 | Site: 5 Sens: 2-->1 |----* H001 case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 -----* 21 case/control:200/200 | | [0] ddl=4 chi2=9.33 p_value_chi2=0.0535 | [1] ddl=6 chi2=11.24 p_value_chi2=0.083 | [2] ddl=7 chi2=11.30 p_value_chi2=0.112 | [3] ddl=10 chi2=19.46 p_value_chi2=0.035 | [4] ddl=13 chi2=25.55 p_value_chi2=0.015 | /----* H003 case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 20 case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 case/control:7/7 | Site: 12 Sens: 2-->1 \----* H000 case/control:98/126 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 altree-v1.3.1/test/paup/unrooted_absent/0000755000175000017500000000000012252703410020427 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/unrooted_absent/localisation/0000755000175000017500000000000012252703410023110 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/unrooted_absent/localisation/test.res.log0000644000175000017500000161073512043315246025403 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Fri Jan 13 11:19:32 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 19 0 0 0 17 19 3 3 3 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 18 19 1 1 1 H008 (4) 18 1 1 1 H014 (5) 18 1 1 1 H009 (11) 19 1 1 1 H006 (12) 19 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | | | \-------------------------------------------- H013 | | 19------------17---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------18 | \--------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> node_18 9 1 0.500 1 ==> 2 node_18 --> H008 11 1 0.333 2 ==> 1 node_18 --> H014 10 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_19 --> H006 11 1 0.333 2 ==> 1 Tree number 2 (rooted using default outgroup) Branch lengths and linkages for tree #2 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 21-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------20---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 3 (rooted using default outgroup) Branch lengths and linkages for tree #3 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 17 20 3 3 3 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 19 20 0 0 1 18 19 1 1 1 H008 (4) 18 1 0 1 H014 (5) 18 1 1 2 H006 (12) 19 1 0 1 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | | | \-------------------------------------------- H013 | | 20------------17---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------18 | | \--------------- H014 +------------------------------------------19 | \----------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> node_18 9 1 0.500 1 ==> 2 node_18 --> H008 11 1 0.333 2 --> 1 node_18 --> H014 10 1 0.500 1 ==> 2 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 4 (rooted using default outgroup) Branch lengths and linkages for tree #4 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 0 0 1 18 20 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------20 /---------- H008 | +---------------------------------------------------19 | | \---------- H014 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 5 (rooted using default outgroup) Branch lengths and linkages for tree #5 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 18 21 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 22 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------21 /---------- H008 | | /---------19 | | | \---------- H014 | \----------------------------------------20 | \--------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 6 (rooted using default outgroup) Branch lengths and linkages for tree #6 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 0 0 1 18 20 3 3 3 16 18 3 2 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 19 20 1 0 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 21 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 +----------20 | | | \------------ H011 | | | | /------------ H008 | \-----------------------------------------------19 | \------------ H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 9 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 7 (rooted using default outgroup) Branch lengths and linkages for tree #7 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 19 20 1 1 1 18 19 3 3 3 16 18 2 2 2 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 20 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 | | | +----------19 \------------ H011 | | | +------------------------------------------------------------- H008 | | | \------------------------------------------------------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 8 (rooted using default outgroup) Branch lengths and linkages for tree #8 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 20 21 1 1 1 19 20 0 0 3 18 19 3 2 3 16 18 2 1 2 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 1 1 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 19 1 0 1 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | | \--------------------------- H013 | /-------18 22 | | /--------- H007 | | | | | | \--------------------------17--------- H012 | /-------19 | | | | \--------- H011 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 10 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 9 (rooted using default outgroup) Branch lengths and linkages for tree #9 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H007 (3) 18 1 0 1 H009 (11) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 22 | +------------------------------------------ H012 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------20 | | \---------- H014 \--------------------------------------------------21 \--------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H009 12 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 Tree number 10 (rooted using default outgroup) Branch lengths and linkages for tree #10 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 17 20 3 3 3 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 19 20 0 0 1 18 19 1 1 1 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 H014 (5) 19 2 1 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | | | \-------------------------------------------- H013 | | 20------------17---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------18 | | \--------------- H006 +------------------------------------------19 | \----------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.333 1 --> 2 node_19 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 11 (rooted using default outgroup) Branch lengths and linkages for tree #11 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 H006 (12) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | | \--------------------------- H013 | /-------17 22 | +------------------------------------- H007 | | | | /-------18 \------------------------------------- H011 | | | | /-------19 \---------------------------------------------- H012 | | | | | \------------------------------------------------------- H006 +-------21 | | /--------- H008 | \-----------------------------------------------------20 | \--------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 12 (rooted using default outgroup) Branch lengths and linkages for tree #12 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 19 0 0 0 17 19 3 3 3 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (12) 18 0 0 0 H014 (5) 19 2 2 2 H009 (11) 19 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | | | \-------------------------------------------- H013 | | 19------------17---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------18 | \--------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.333 1 ==> 2 node_19 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 Tree number 13 (rooted using default outgroup) Branch lengths and linkages for tree #13 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 21-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------20---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 14 (rooted using default outgroup) Branch lengths and linkages for tree #14 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | | /-------18 \------------------------------------- H013 | | | 22 /-------19 \---------------------------------------------- H014 | | | +-------20 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------21--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 15 (rooted using default outgroup) Branch lengths and linkages for tree #15 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 19 21 2 2 3 H007 (3) 19 1 1 2 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 20 21 2 1 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | +----------18 \------------------------------------------------- H013 | | 21 \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 16 (rooted using default outgroup) Branch lengths and linkages for tree #16 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 3 18 20 2 2 2 17 18 1 1 3 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 2 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 22 | \---------------------------------------------------- H014 +--------20 | | /---------- H007 | | | | \---------------------------------------------------19---------- H012 | | | \---------- H011 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 13 1 0.500 1 ==> 0 node_20 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> node_19 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 17 (rooted using default outgroup) Branch lengths and linkages for tree #17 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 3 3 3 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 2 2 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 19 20 1 1 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 20 | \------------------------------------------------- H014 | | +----------18------------------------------------------------------------- H007 | | | +------------------------------------------------------------- H012 | | | \------------------------------------------------------------- H011 | | /------------ H008 +-----------------------------------------------------------19 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 18 (rooted using default outgroup) Branch lengths and linkages for tree #18 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | 21 /---------18 \------------------------------------------ H014 | | | +--------19 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------20---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 19 (rooted using default outgroup) Branch lengths and linkages for tree #19 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 3 H007 (3) 21 1 1 2 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 22 | \---------------------------------------------------- H014 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 20 (rooted using default outgroup) Branch lengths and linkages for tree #20 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | | /-------18 \------------------------------------- H001 | | | 22 /-------19 \---------------------------------------------- H014 | | | +-------20 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------21--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 21 (rooted using default outgroup) Branch lengths and linkages for tree #21 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 23-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------20 | | \---------- H011 | /--------21 | | \--------------------- H012 +----------------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 22 (rooted using default outgroup) Branch lengths and linkages for tree #22 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | 21 /---------18 \------------------------------------------ H014 | | | +--------19 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------20---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 23 (rooted using default outgroup) Branch lengths and linkages for tree #23 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | /------15 /-------- H003 | | \------14 | /------16 \-------- H005 | | | | /-------17 \------------------------ H001 | | | | /------18 \-------------------------------- H013 | | | 24 /------19 \----------------------------------------- H014 | | | | /------20 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------23 /-------- H007 | | /------21 | | | \-------- H011 | \-----------------------------------------------22 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 24 (rooted using default outgroup) Branch lengths and linkages for tree #24 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | | /-------18 \------------------------------------- H013 | | | 24 /-------19 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------20 | | | \--------- H011 | | /-------21 | | | \------------------ H012 | \-----------------------------------22 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 25 (rooted using default outgroup) Branch lengths and linkages for tree #25 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | | /-------18 \------------------------------------- H013 | | | 23 /-------19 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------22 /-------20 | | | \--------- H011 | +--------------------------------------------21 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 26 (rooted using default outgroup) Branch lengths and linkages for tree #26 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | | /-------18 \------------------------------------- H013 24 | | | /-------19 \---------------------------------------------- H014 | | | +-------20 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------22 /--------- H012 | | \-------21 \--------------------------------------------23 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 27 (rooted using default outgroup) Branch lengths and linkages for tree #27 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H007 (3) 18 1 0 1 H009 (11) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H012 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------20 | \---------- H014 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H009 12 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 28 (rooted using default outgroup) Branch lengths and linkages for tree #28 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H007 (3) 18 1 0 1 H009 (11) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 21 2 2 2 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H012 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------20 | \---------- H006 | \------------------------------------------------------------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H009 12 1 0.333 2 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 Tree number 29 (rooted using default outgroup) Branch lengths and linkages for tree #29 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H007 (3) 18 1 0 1 H009 (11) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 22 | +------------------------------------------ H012 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------20 | | \---------- H006 \--------------------------------------------------21 \--------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H009 12 1 0.333 2 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 Tree number 30 (rooted using default outgroup) Branch lengths and linkages for tree #30 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 23 | | | /---------18 \------------------------------------------ H014 | | | +--------19 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------21 /---------- H012 | | \---------20 \----------------------------------------22 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 Tree number 31 (rooted using default outgroup) Branch lengths and linkages for tree #31 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 23 | | | /---------18 \------------------------------------------ H014 | | | +--------19 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------21 /---------- H012 | | \---------20 \----------------------------------------22 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 Tree number 32 (rooted using default outgroup) Branch lengths and linkages for tree #32 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 2 2 2 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | 22 | \------------------------------------- H014 | /-------18 | | +---------------------------------------------- H012 | | | | /-------19 \---------------------------------------------- H011 | | | +-------20 \------------------------------------------------------- H007 | | | \---------------------------------------------------------------- H009 | | /--------- H008 \--------------------------------------------------------------21 \--------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 Tree number 33 (rooted using default outgroup) Branch lengths and linkages for tree #33 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 20 21 1 1 1 19 20 0 0 1 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 0 0 0 H006 (12) 19 0 0 0 H008 (4) 20 1 0 1 H014 (5) 21 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | +---------------- H001 | /------15 | | | /-------- H003 | | \------14 | /------16 \-------- H005 | | | | | \------------------------ H013 | /-------17 22 | +-------------------------------- H007 | | | | /------18 \-------------------------------- H011 | | | | /------19 \----------------------------------------- H012 | | | | /------20 \------------------------------------------------- H006 | | | +------21 \--------------------------------------------------------- H008 | | | \----------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 11 1 0.500 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 34 (rooted using default outgroup) Branch lengths and linkages for tree #34 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 H006 (12) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H012 | | | \--------------------------------------------------------------- H006 | | /---------- H008 +-------------------------------------------------------------20 | \---------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 35 (rooted using default outgroup) Branch lengths and linkages for tree #35 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | 23 /-------18 \------------------------------------- H014 | | | | /-------19 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------22 /--------- H007 | | /-------20 | | | \--------- H011 | \--------------------------------------------21 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 36 (rooted using default outgroup) Branch lengths and linkages for tree #36 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 0 0 1 18 20 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 19 20 1 0 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 21 2 2 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.500 2 --> 1 node_20 --> node_19 11 1 0.500 2 --> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 37 (rooted using default outgroup) Branch lengths and linkages for tree #37 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 2 2 2 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 20 21 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | 22 | \------------------------------------- H014 | /-------18 | | +---------------------------------------------- H007 | | | | /-------19 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------21 | | /--------- H008 | \-----------------------------------------------------20 | \--------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 38 (rooted using default outgroup) Branch lengths and linkages for tree #38 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H013 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | 23 /-------18 \------------------------------------- H014 | | | | /-------19 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------22 /--------- H007 | | /-------20 | | | \--------- H011 | \--------------------------------------------21 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 39 (rooted using default outgroup) Branch lengths and linkages for tree #39 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 0 0 2 18 19 3 2 3 16 18 2 1 2 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 1 1 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 19 1 0 1 H008 (4) 20 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------18 21 | | /---------- H007 | | | | | | \------------------------------17---------- H012 | /---------19 | | | | \---------- H011 | | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 10 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 40 (rooted using default outgroup) Branch lengths and linkages for tree #40 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 3 18 19 3 2 3 16 18 3 1 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 19 2 0 2 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 21 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 +----------19 | | | \------------ H011 | | | \------------------------------------------------------------- H014 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 41 (rooted using default outgroup) Branch lengths and linkages for tree #41 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 18 21 3 3 3 16 18 3 2 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 22 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 | | | +----------21 \------------ H011 | | | | /------------ H008 | | /----------19 | | | \------------ H006 | \-----------------------------------20 | \------------------------ H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 42 (rooted using default outgroup) Branch lengths and linkages for tree #42 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 0 0 1 18 20 3 3 3 16 18 3 2 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 21 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 | | | | | \------------ H011 +----------20 | | /------------ H008 | +-----------------------------------------------19 | | \------------ H006 | | | \------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 43 (rooted using default outgroup) Branch lengths and linkages for tree #43 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 3 17 19 2 2 2 16 17 3 1 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 21 | \------------------------------------------------- H014 +----------19 | | /------------ H007 | | | | \-----------------------------------------------18------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 13 1 0.500 1 ==> 0 node_19 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 44 (rooted using default outgroup) Branch lengths and linkages for tree #44 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 3 3 3 18 19 1 1 1 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 2 2 2 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 0 0 0 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | 21 | \------------------------------------- H014 | /-------18 | | +---------------------------------------------- H007 | | | | /-------19 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------20 | +---------------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 45 (rooted using default outgroup) Branch lengths and linkages for tree #45 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 19 20 2 2 3 H007 (3) 19 2 1 2 H012 (10) 19 2 1 2 H011 (13) 19 0 0 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 20---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------19------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 46 (rooted using default outgroup) Branch lengths and linkages for tree #46 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 18 21 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | 22 /---------18 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------21 /---------19 | | | \---------- H011 | +----------------------------------------20 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 47 (rooted using default outgroup) Branch lengths and linkages for tree #47 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 18 22 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 21 22 0 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | 23 /---------18 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------19 | | | \---------- H011 | | /--------20 | | | \--------------------- H012 | \------------------------------21 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 48 (rooted using default outgroup) Branch lengths and linkages for tree #48 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 0 0 3 18 19 3 2 3 16 18 3 1 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 19 2 0 2 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------18 22 | | /---------- H007 | | | | | | \------------------------------17---------- H012 | /---------19 | | | | \---------- H011 | | | +--------21 \---------------------------------------------------- H014 | | | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 49 (rooted using default outgroup) Branch lengths and linkages for tree #49 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 19 20 1 1 1 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 0 0 0 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 20 2 2 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 20 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------19 | +--------------------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 11 1 0.500 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_20 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 50 (rooted using default outgroup) Branch lengths and linkages for tree #50 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 17 19 2 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 18 19 2 1 2 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 20 21 2 2 3 H007 (3) 20 1 1 2 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 21 | \------------------------------------------------- H014 +----------19 | | /------------ H008 | \-----------------------------------------------18 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 --> 2 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 51 (rooted using default outgroup) Branch lengths and linkages for tree #51 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 17 19 2 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 18 19 2 1 2 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 20 21 2 2 3 H007 (3) 20 1 1 2 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 21 | \------------------------------------------------- H014 +----------19 | | /------------ H008 | \-----------------------------------------------18 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 --> 2 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 52 (rooted using default outgroup) Branch lengths and linkages for tree #52 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 18 22 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 21 22 0 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | 23 /---------18 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------19 | | | \---------- H011 | | /--------20 | | | \--------------------- H012 | \------------------------------21 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 53 (rooted using default outgroup) Branch lengths and linkages for tree #53 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 3 H007 (3) 21 1 1 2 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 22 | \---------------------------------------------------- H014 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 54 (rooted using default outgroup) Branch lengths and linkages for tree #54 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 19 21 2 2 3 H007 (3) 19 1 1 2 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 20 21 2 1 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | +----------18 \------------------------------------------------- H001 | | 21 \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 55 (rooted using default outgroup) Branch lengths and linkages for tree #55 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 23-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------21 /---------- H012 | | \---------20 +----------------------------------------22 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 56 (rooted using default outgroup) Branch lengths and linkages for tree #56 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 23-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------20 | | \---------- H011 | /--------21 | | \--------------------- H012 +----------------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 57 (rooted using default outgroup) Branch lengths and linkages for tree #57 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 19 20 2 2 3 H007 (3) 19 2 1 2 H012 (10) 19 2 1 2 H011 (13) 19 0 0 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 20---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------19------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 58 (rooted using default outgroup) Branch lengths and linkages for tree #58 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 3 H007 (3) 20 1 0 2 19 20 0 0 1 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 H009 (11) 21 2 0 2 22 23 2 1 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | +----------18 \------------------------------------------------- H013 | | 23 \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------20 /------------ H012 | | \----------19 +-----------------------------------21 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------22 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 59 (rooted using default outgroup) Branch lengths and linkages for tree #59 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 1 0 2 21 22 0 0 1 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 23 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 24 | | | | \---------------------------------------------------- H014 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 60 (rooted using default outgroup) Branch lengths and linkages for tree #60 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 17 22 2 2 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 20 22 0 0 1 19 20 2 2 3 H007 (3) 19 1 0 2 18 19 0 0 1 H012 (10) 18 1 1 2 H011 (13) 18 1 0 1 H009 (11) 20 2 0 2 21 22 2 1 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H001 | | 22 \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------19 /--------------- H012 | | \------------18 +---------------------------20 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------21 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 Tree number 61 (rooted using default outgroup) Branch lengths and linkages for tree #61 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 23-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------21 /---------- H012 | | \---------20 +----------------------------------------22 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 62 (rooted using default outgroup) Branch lengths and linkages for tree #62 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 3 19 20 0 0 1 H007 (3) 19 1 1 2 H011 (13) 19 1 0 1 H012 (10) 20 1 0 2 21 22 2 0 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | +----------18 \------------------------------------------------- H013 | | 23 \------------------------------------------------------------- H014 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 +-----------------------------------22 | | /------------ H008 | \----------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 63 (rooted using default outgroup) Branch lengths and linkages for tree #63 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | +----------18 \------------------------------------------------- H013 | | 22 \------------------------------------------------------------- H014 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 | | +-----------------------------------21------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 64 (rooted using default outgroup) Branch lengths and linkages for tree #64 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 3 H007 (3) 20 1 0 2 19 20 0 0 1 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 H009 (11) 21 2 0 2 22 23 2 1 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | +----------18 \------------------------------------------------- H001 | | 23 \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------20 /------------ H012 | | \----------19 +-----------------------------------21 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------22 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 65 (rooted using default outgroup) Branch lengths and linkages for tree #65 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 17 22 2 2 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 20 22 0 0 1 19 20 2 2 3 H007 (3) 19 1 0 2 18 19 0 0 1 H012 (10) 18 1 1 2 H011 (13) 18 1 0 1 H009 (11) 20 2 0 2 21 22 2 1 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H013 | | 22 \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------19 /--------------- H012 | | \------------18 +---------------------------20 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------21 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 Tree number 66 (rooted using default outgroup) Branch lengths and linkages for tree #66 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 17 20 2 2 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 18 20 2 2 3 H007 (3) 18 1 1 2 H012 (10) 18 1 1 2 H011 (13) 18 1 0 1 19 20 2 1 2 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H009 (11) 20 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H001 | | 20 \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------18--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 67 (rooted using default outgroup) Branch lengths and linkages for tree #67 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 17 22 2 2 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 21 22 0 0 1 19 21 2 2 3 18 19 0 0 1 H007 (3) 18 1 1 2 H011 (13) 18 1 0 1 H012 (10) 19 1 0 2 20 21 2 0 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H013 | | 22 \---------------------------------------------------------- H014 | | /--------------- H007 | /------------18 | | \--------------- H011 | /-------------19 | | \----------------------------- H012 +---------------------------21 | | /--------------- H008 | \---------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 68 (rooted using default outgroup) Branch lengths and linkages for tree #68 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 17 22 2 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 21 22 1 1 1 20 21 0 0 1 19 20 2 2 3 18 19 1 1 1 H007 (3) 18 2 1 2 H011 (13) 18 0 0 1 H012 (10) 19 1 0 1 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 23 | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------18 +----------22 | \------------ H011 | | /----------19 | | | \------------------------ H012 | | /-----------20 | | | \------------------------------------ H006 | \----------21 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 69 (rooted using default outgroup) Branch lengths and linkages for tree #69 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 17 21 2 2 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 20 21 1 1 1 19 20 2 2 3 18 19 1 1 1 H007 (3) 18 2 1 2 H011 (13) 18 0 0 1 H012 (10) 19 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H013 | | 21 \---------------------------------------------------------- H014 | | /--------------- H007 | /------------18 | | \--------------- H011 | /-------------19 | | \----------------------------- H012 | | +---------------------------20-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 13 1 0.333 1 --> 0 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 70 (rooted using default outgroup) Branch lengths and linkages for tree #70 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 17 20 2 2 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 18 20 2 2 3 H007 (3) 18 1 1 2 H012 (10) 18 1 1 2 H011 (13) 18 1 0 1 19 20 2 1 2 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H009 (11) 20 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H013 | | 20 \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------18--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_18 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 71 (rooted using default outgroup) Branch lengths and linkages for tree #71 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 0 0 1 17 19 2 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 18 19 2 1 2 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 1 0 2 20 21 0 0 1 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 22 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 23 | | | | \------------------------------------------------- H014 +----------19 | | /------------ H008 | \-----------------------------------------------18 | \------------ H006 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 \-----------------------------------22 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 72 (rooted using default outgroup) Branch lengths and linkages for tree #72 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 18 21 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | 22 /---------18 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------21 /---------19 | | | \---------- H011 | +----------------------------------------20 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 73 (rooted using default outgroup) Branch lengths and linkages for tree #73 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 24 | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------19 +--------23 | \---------- H011 | | /--------20 | | | \--------------------- H012 | | /---------21 | | | \------------------------------- H006 | \-------------------22 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 74 (rooted using default outgroup) Branch lengths and linkages for tree #74 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | | /-------18 \------------------------------------- H001 24 | | | /-------19 \---------------------------------------------- H014 | | | +-------20 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------22 /--------- H012 | | \-------21 \--------------------------------------------23 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 75 (rooted using default outgroup) Branch lengths and linkages for tree #75 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | /------15 /-------- H003 | | \------14 | /------16 \-------- H005 | | | | /-------17 \------------------------ H013 | | | | /------18 \-------------------------------- H001 | | | 24 /------19 \----------------------------------------- H014 | | | | /------20 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------23 /-------- H007 | | /------21 | | | \-------- H011 | \-----------------------------------------------22 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 76 (rooted using default outgroup) Branch lengths and linkages for tree #76 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | | /-------18 \------------------------------------- H001 | | | 24 /-------19 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------20 | | | \--------- H011 | | /-------21 | | | \------------------ H012 | \-----------------------------------22 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 77 (rooted using default outgroup) Branch lengths and linkages for tree #77 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | | /-------18 \------------------------------------- H001 | | | 23 /-------19 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------22 /-------20 | | | \--------- H011 | +--------------------------------------------21 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 78 (rooted using default outgroup) Branch lengths and linkages for tree #78 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 1 0 2 21 22 0 0 1 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 23 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 24 | | | | \---------------------------------------------------- H014 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 79 (rooted using default outgroup) Branch lengths and linkages for tree #79 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 21 22 0 0 1 20 21 2 2 3 H007 (3) 20 2 0 2 19 20 0 0 1 H012 (10) 19 2 1 2 H011 (13) 19 0 0 1 H009 (11) 21 1 0 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 22---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------20 /------------ H012 | | \----------19 +-----------------------------------21 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 80 (rooted using default outgroup) Branch lengths and linkages for tree #80 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 0 0 1 17 19 2 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 18 19 2 1 2 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 1 0 2 20 21 0 0 1 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 22 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 23 | | | | \------------------------------------------------- H014 +----------19 | | /------------ H008 | \-----------------------------------------------18 | \------------ H006 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 \-----------------------------------22 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 81 (rooted using default outgroup) Branch lengths and linkages for tree #81 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 21 22 0 0 1 20 21 2 2 3 H007 (3) 20 2 0 2 19 20 0 0 1 H012 (10) 19 2 1 2 H011 (13) 19 0 0 1 H009 (11) 21 1 0 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 22---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------20 /------------ H012 | | \----------19 +-----------------------------------21 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 82 (rooted using default outgroup) Branch lengths and linkages for tree #82 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 17 22 2 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 21 22 1 1 1 20 21 0 0 1 19 20 2 2 3 18 19 1 1 1 H007 (3) 18 2 1 2 H011 (13) 18 0 0 1 H012 (10) 19 1 0 1 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 23 | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------18 +----------22 | \------------ H011 | | /----------19 | | | \------------------------ H012 | | /-----------20 | | | \------------------------------------ H006 | \----------21 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 83 (rooted using default outgroup) Branch lengths and linkages for tree #83 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 22---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 +-----------------------------------21 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 84 (rooted using default outgroup) Branch lengths and linkages for tree #84 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 22---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 +-----------------------------------21 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 85 (rooted using default outgroup) Branch lengths and linkages for tree #85 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 3 19 20 0 0 1 H007 (3) 19 1 1 2 H011 (13) 19 1 0 1 H012 (10) 20 1 0 2 21 22 2 0 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | +----------18 \------------------------------------------------- H001 | | 23 \------------------------------------------------------------- H014 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 +-----------------------------------22 | | /------------ H008 | \----------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 86 (rooted using default outgroup) Branch lengths and linkages for tree #86 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 24 | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------19 +--------23 | \---------- H011 | | /--------20 | | | \--------------------- H012 | | /---------21 | | | \------------------------------- H006 | \-------------------22 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 87 (rooted using default outgroup) Branch lengths and linkages for tree #87 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 17 22 2 2 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 21 22 0 0 1 19 21 2 2 3 18 19 0 0 1 H007 (3) 18 1 1 2 H011 (13) 18 1 0 1 H012 (10) 19 1 0 2 20 21 2 0 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H001 | | 22 \---------------------------------------------------------- H014 | | /--------------- H007 | /------------18 | | \--------------- H011 | /-------------19 | | \----------------------------- H012 +---------------------------21 | | /--------------- H008 | \---------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 88 (rooted using default outgroup) Branch lengths and linkages for tree #88 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | +----------18 \------------------------------------------------- H001 | | 22 \------------------------------------------------------------- H014 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 | | +-----------------------------------21------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 89 (rooted using default outgroup) Branch lengths and linkages for tree #89 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 17 21 2 2 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 20 21 1 1 1 19 20 2 2 3 18 19 1 1 1 H007 (3) 18 2 1 2 H011 (13) 18 0 0 1 H012 (10) 19 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H001 | | 21 \---------------------------------------------------------- H014 | | /--------------- H007 | /------------18 | | \--------------- H011 | /-------------19 | | \----------------------------- H012 | | +---------------------------20-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 13 1 0.333 1 --> 0 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 altree-v1.3.1/test/paup/unrooted_absent/localisation/caco.loc0000644000175000017500000000214012043315246024515 0ustar vdanjeanvdanjeanLocalisation method using S-character Results: site number 7 sens 1-->2 V_i = 1.69733684958301 site number 6 sens 1-->2 V_i = 1.69733684958301 site number 12 sens 1-->2 V_i = 0.445435403187374 site number 2 sens 1-->2 V_i = 0 site number 8 sens 1-->2 V_i = 0 site number 1 sens 1-->2 V_i = 0 site number 3 sens 2-->1 V_i = 0 site number 4 sens 2-->1 V_i = 0 site number 10 sens 1-->2 V_i = 0 site number 9 sens 1-->2 V_i = 0 site number 5 sens 2-->1 V_i = 0 site number 12 sens 2-->1 V_i = 0 site number 6 sens 2-->1 V_i = -0.462910049886276 site number 11 sens 2-->1 V_i = -0.462910049886276 site number 11 sens 1-->2 V_i = -0.462910049886276 site number 3 sens 1-->2 V_i = -0.462910049886276 site number 7 sens 2-->1 V_i = -0.462910049886276 site number 8 sens 2-->1 V_i = -0.462910049886276 site number 10 sens 2-->1 V_i = -0.462910049886276 site number 4 sens 1-->2 V_i = -0.462910049886276 site number 5 sens 1-->2 V_i = -0.462910049886276 site number 1 sens 2-->1 V_i = -0.654653670707977 site number 9 sens 2-->1 V_i = -0.654653670707977 site number 2 sens 2-->1 V_i = -0.654653670707977 altree-v1.3.1/test/paup/unrooted_absent/localisation/test.tree0000644000175000017500000002465312043315246024766 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Fri Jan 13 11:19:32 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/unrooted_absent/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 69978 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.09 sec) ] tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),(H008,H014),H009,H006)); tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),((H008,H014),H006),H009)); tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),(H008,H014),H006),H009)); tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),((H008,H014),H006)),H009)); tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),(H008,H014)),H009,H006)); tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H008,H014),H009,H006)); tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),H008),H006),H009)); tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),((H008,H014),H006))); tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),((H008,H006),H014),H009)); tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H006),(H008,H014)),H009)); tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),(H008,H006),H014,H009)); tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_14 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_15 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_16 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_17 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H007,H012,H011),(H008,H006),H009)); tree PAUP_18 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_21 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_22 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005)),H001),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_24 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_25 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_26 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_27 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),(H008,H014),H006)); tree PAUP_28 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),(H008,H006),H014)); tree PAUP_29 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),((H008,H006),H014))); tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_31 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H012,H011),H007),H009),(H008,H006))); tree PAUP_33 = [&U] (H002,((((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H006),H008),H014),H009)); tree PAUP_34 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H006),(H008,H014),H009)); tree PAUP_35 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_36 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),(H008,H006)),H014,H009)); tree PAUP_37 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H007,H011),H012),(H008,H006)),H009)); tree PAUP_38 = [&U] (H002,(((((((H010,H013,(H003,H005)),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_39 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),H008),H009,H006)); tree PAUP_40 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),(H008,H006),H009)); tree PAUP_41 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),((H008,H006),H014)),H009)); tree PAUP_42 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),(H008,H006),H014),H009)); tree PAUP_43 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_44 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H007,H011),H012),H008,H006),H009)); tree PAUP_45 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_46 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_48 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),(H008,H006)),H009)); tree PAUP_49 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H008,H006),H014,H009)); tree PAUP_50 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_51 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_52 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_53 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_54 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_57 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_58 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_59 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_60 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_61 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_62 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_63 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_64 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_65 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_66 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_67 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_68 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_69 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_70 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_71 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_72 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_73 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_74 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_75 = [&U] (H002,((((((((H010,(H003,H005)),H013),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_76 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_77 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_78 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_79 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_81 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_82 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_83 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_84 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_85 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_86 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_87 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_88 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_89 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),(((H007,H011),H012),H008,H006),H009)); End; altree-v1.3.1/test/paup/unrooted_absent/localisation/et_caco.paup0000644000175000017500000000203212043315246025375 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=13 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 2222211222220 H001 112222222222? H003 221122222222? H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/unrooted_absent/localisation/caco.paup0000644000175000017500000000177412043315246024721 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=13 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 [H000 222222222222] ; end; begin assumptions; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/unrooted_absent/localisation/nb_cas_control.txt0000644000175000017500000000030312043315246026636 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/unrooted_absent/localisation/run-prog0000755000175000017500000000071312043315246024614 0ustar vdanjeanvdanjean#!/bin/sh -x # To obtain the paup input file containing the character S ../../../../altree-add-S -i caco.paup -j nb_cas_control.txt \ -o et_caco.paup -e 1 -t SNP -p 0.58 # To run paup paup et_caco.paup # To perform the localisation analysis on the 89 equiparsimonious trees ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc altree-v1.3.1/test/paup/unrooted_absent/association/0000755000175000017500000000000012252703410022743 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paup/unrooted_absent/association/test.res.log0000644000175000017500000162205012043315246025227 0ustar vdanjeanvdanjean P A U P * Portable version 4.0b10 for Unix Tue Jan 10 20:34:54 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 2 (rooted using default outgroup) Branch lengths and linkages for tree #2 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 3 (rooted using default outgroup) Branch lengths and linkages for tree #3 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H014 +------------------------------------------20 | \----------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 4 (rooted using default outgroup) Branch lengths and linkages for tree #4 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------21 /---------- H008 | +---------------------------------------------------20 | | \---------- H014 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 5 (rooted using default outgroup) Branch lengths and linkages for tree #5 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------22 /---------- H008 | | /---------20 | | | \---------- H014 | \----------------------------------------21 | \--------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 6 (rooted using default outgroup) Branch lengths and linkages for tree #6 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 1 0 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------21 | | | \------------ H011 | | | | /------------ H008 | \-----------------------------------------------20 | \------------ H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> node_20 9 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 7 (rooted using default outgroup) Branch lengths and linkages for tree #7 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 2 2 2 17 19 2 2 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 21 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------20 \------------ H011 | | | +------------------------------------------------------------- H008 | | | \------------------------------------------------------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 8 (rooted using default outgroup) Branch lengths and linkages for tree #8 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 2 19 20 2 2 2 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 1 0 1 H008 (4) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------19 | | | /--------- H007 | | | | | | \--------------------------18--------- H012 | /-------20 | | | | \--------- H011 | | | | /-------21 \---------------------------------------------- H014 | | | +-------22 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 9 (rooted using default outgroup) Branch lengths and linkages for tree #9 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H006 (12) 22 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H014 \--------------------------------------------------22 \--------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 --> 1 Tree number 10 (rooted using default outgroup) Branch lengths and linkages for tree #10 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H006 +------------------------------------------20 | \----------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 11 (rooted using default outgroup) Branch lengths and linkages for tree #11 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------18 | | +------------------------------------- H007 | | | | /-------19 \------------------------------------- H011 | | | | /-------20 \---------------------------------------------- H012 | | | | | \------------------------------------------------------- H006 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 12 (rooted using default outgroup) Branch lengths and linkages for tree #12 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 20 2 2 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_20 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 13 (rooted using default outgroup) Branch lengths and linkages for tree #13 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 14 (rooted using default outgroup) Branch lengths and linkages for tree #14 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 15 (rooted using default outgroup) Branch lengths and linkages for tree #15 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 16 (rooted using default outgroup) Branch lengths and linkages for tree #16 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 17 (rooted using default outgroup) Branch lengths and linkages for tree #17 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 18 (rooted using default outgroup) Branch lengths and linkages for tree #18 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 0 0 1 19 20 2 2 2 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 1 0 1 H008 (4) 21 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------21 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 19 (rooted using default outgroup) Branch lengths and linkages for tree #19 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 20 (rooted using default outgroup) Branch lengths and linkages for tree #20 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 21 (rooted using default outgroup) Branch lengths and linkages for tree #21 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 22 (rooted using default outgroup) Branch lengths and linkages for tree #22 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 23 (rooted using default outgroup) Branch lengths and linkages for tree #23 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 2 22 23 0 0 1 H007 (3) 22 1 1 1 H011 (13) 22 0 0 0 H012 (10) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H001 | | | | /------19 \-------------------------------- H013 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_23 --> H012 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 24 (rooted using default outgroup) Branch lengths and linkages for tree #24 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 25 (rooted using default outgroup) Branch lengths and linkages for tree #25 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 23 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------22 \------------ H011 | | | | /------------ H008 | | /----------20 | | | \------------ H006 | \-----------------------------------21 | \------------------------ H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 26 (rooted using default outgroup) Branch lengths and linkages for tree #26 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 2 19 20 2 2 2 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------20 | | | \------------ H011 | | | \------------------------------------------------------------- H014 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 27 (rooted using default outgroup) Branch lengths and linkages for tree #27 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 2 18 20 2 2 2 17 18 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H007 | | | | \-----------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 28 (rooted using default outgroup) Branch lengths and linkages for tree #28 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 29 (rooted using default outgroup) Branch lengths and linkages for tree #29 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 1 19 20 2 2 2 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 0 0 0 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H014 (5) 22 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | +---------------- H001 | | | /------16 /-------- H003 | | +------15 | | | \-------- H005 | /------17 | | | | \---------------- H000 | | | | | \------------------------ H013 23 /-------18 | | +-------------------------------- H007 | | | | /------19 \-------------------------------- H011 | | | | /------20 \----------------------------------------- H012 | | | | /------21 \------------------------------------------------- H006 | | | +------22 \--------------------------------------------------------- H008 | | | \----------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 30 (rooted using default outgroup) Branch lengths and linkages for tree #30 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H012 | | | \--------------------------------------------------------------- H006 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 31 (rooted using default outgroup) Branch lengths and linkages for tree #31 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 20 21 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 22 2 2 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 32 (rooted using default outgroup) Branch lengths and linkages for tree #32 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 33 (rooted using default outgroup) Branch lengths and linkages for tree #33 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 34 (rooted using default outgroup) Branch lengths and linkages for tree #34 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H013 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H001 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 35 (rooted using default outgroup) Branch lengths and linkages for tree #35 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 36 (rooted using default outgroup) Branch lengths and linkages for tree #36 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | | | \------------ H011 +----------21 | | /------------ H008 | +-----------------------------------------------20 | | \------------ H006 | | | \------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 37 (rooted using default outgroup) Branch lengths and linkages for tree #37 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 2 2 2 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | | | \------------------------------------------------- H014 | | +----------19------------------------------------------------------------- H007 | | | +------------------------------------------------------------- H012 | | | \------------------------------------------------------------- H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 38 (rooted using default outgroup) Branch lengths and linkages for tree #38 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 22 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------21 | +---------------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 39 (rooted using default outgroup) Branch lengths and linkages for tree #39 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 2 2 2 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H007 (3) 20 1 0 1 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H012 | | | | /-------20 \---------------------------------------------- H011 | | | +-------21 \------------------------------------------------------- H007 | | | \---------------------------------------------------------------- H009 | | /--------- H008 \--------------------------------------------------------------22 \--------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_20 --> H007 12 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 40 (rooted using default outgroup) Branch lengths and linkages for tree #40 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 41 (rooted using default outgroup) Branch lengths and linkages for tree #41 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 42 (rooted using default outgroup) Branch lengths and linkages for tree #42 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 43 (rooted using default outgroup) Branch lengths and linkages for tree #43 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 2 19 20 2 2 2 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------22 \---------------------------------------------------- H014 | | | | /---------- H008 | \---------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 44 (rooted using default outgroup) Branch lengths and linkages for tree #44 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H014 (5) 22 2 2 2 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 Tree number 45 (rooted using default outgroup) Branch lengths and linkages for tree #45 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H014 (5) 22 2 1 2 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H006 \--------------------------------------------------22 \--------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 Tree number 46 (rooted using default outgroup) Branch lengths and linkages for tree #46 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 47 (rooted using default outgroup) Branch lengths and linkages for tree #47 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 2 2 2 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 0 0 0 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 21 2 2 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 21 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------20 | +--------------------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 48 (rooted using default outgroup) Branch lengths and linkages for tree #48 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 49 (rooted using default outgroup) Branch lengths and linkages for tree #49 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 50 (rooted using default outgroup) Branch lengths and linkages for tree #50 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 51 (rooted using default outgroup) Branch lengths and linkages for tree #51 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 2 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 2 20 21 2 0 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H007 | | | | \---------------------------------------------------20---------- H012 | | | \---------- H011 | | /---------- H008 +-------------------------------------------------------------22 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 52 (rooted using default outgroup) Branch lengths and linkages for tree #52 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 53 (rooted using default outgroup) Branch lengths and linkages for tree #53 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 54 (rooted using default outgroup) Branch lengths and linkages for tree #54 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | 25 /-------19 \------------------------------------- H001 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 55 (rooted using default outgroup) Branch lengths and linkages for tree #55 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 56 (rooted using default outgroup) Branch lengths and linkages for tree #56 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 57 (rooted using default outgroup) Branch lengths and linkages for tree #57 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 58 (rooted using default outgroup) Branch lengths and linkages for tree #58 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 59 (rooted using default outgroup) Branch lengths and linkages for tree #59 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 60 (rooted using default outgroup) Branch lengths and linkages for tree #60 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 61 (rooted using default outgroup) Branch lengths and linkages for tree #61 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 62 (rooted using default outgroup) Branch lengths and linkages for tree #62 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 63 (rooted using default outgroup) Branch lengths and linkages for tree #63 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 64 (rooted using default outgroup) Branch lengths and linkages for tree #64 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | 25 /---------19 \------------------------------------------ H013 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 65 (rooted using default outgroup) Branch lengths and linkages for tree #65 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 23 24 1 1 1 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 66 (rooted using default outgroup) Branch lengths and linkages for tree #66 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 67 (rooted using default outgroup) Branch lengths and linkages for tree #67 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 22 23 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 68 (rooted using default outgroup) Branch lengths and linkages for tree #68 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 69 (rooted using default outgroup) Branch lengths and linkages for tree #69 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | 25 /-------19 \------------------------------------- H013 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 70 (rooted using default outgroup) Branch lengths and linkages for tree #70 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 71 (rooted using default outgroup) Branch lengths and linkages for tree #71 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 72 (rooted using default outgroup) Branch lengths and linkages for tree #72 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 2 22 23 0 0 1 H007 (3) 22 1 1 1 H011 (13) 22 0 0 0 H012 (10) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H013 | | | | /------19 \-------------------------------- H001 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_23 --> H012 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 73 (rooted using default outgroup) Branch lengths and linkages for tree #73 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 2 H007 (3) 20 1 0 1 19 20 0 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 74 (rooted using default outgroup) Branch lengths and linkages for tree #74 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 75 (rooted using default outgroup) Branch lengths and linkages for tree #75 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 76 (rooted using default outgroup) Branch lengths and linkages for tree #76 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 77 (rooted using default outgroup) Branch lengths and linkages for tree #77 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H013 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 78 (rooted using default outgroup) Branch lengths and linkages for tree #78 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H001 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 79 (rooted using default outgroup) Branch lengths and linkages for tree #79 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 80 (rooted using default outgroup) Branch lengths and linkages for tree #80 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 81 (rooted using default outgroup) Branch lengths and linkages for tree #81 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 82 (rooted using default outgroup) Branch lengths and linkages for tree #82 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | 25 /---------19 \------------------------------------------ H001 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 83 (rooted using default outgroup) Branch lengths and linkages for tree #83 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 2 H007 (3) 20 1 0 1 19 20 0 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 84 (rooted using default outgroup) Branch lengths and linkages for tree #84 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 85 (rooted using default outgroup) Branch lengths and linkages for tree #85 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 86 (rooted using default outgroup) Branch lengths and linkages for tree #86 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 23 24 1 1 1 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 87 (rooted using default outgroup) Branch lengths and linkages for tree #87 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 22 23 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 88 (rooted using default outgroup) Branch lengths and linkages for tree #88 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 89 (rooted using default outgroup) Branch lengths and linkages for tree #89 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 altree-v1.3.1/test/paup/unrooted_absent/association/run_altree0000755000175000017500000000056512043315246025043 0ustar vdanjeanvdanjean#!/bin/sh -x # To run paup paup caco.paup # To perform the association test # The outgroup is specified (option --outgroup) because the tree must be # rooted for the test but it is removed before the tree analysis ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ --outgroup H000 --remove-outgroup -p paup -r 1 --tree-to-analyse 1\ -o 1_caco.asso altree-v1.3.1/test/paup/unrooted_absent/association/test.tree0000644000175000017500000002545412043315246024621 0ustar vdanjeanvdanjean#NEXUS Begin trees; [Treefile saved Tue Jan 10 20:34:54 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/non_enracine_absent/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90406 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H014),H009,H006)); tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H014),H006),H009)); tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H014),H006),H009)); tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),((H008,H014),H006)),H009)); tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H014)),H009,H006)); tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H008,H014),H009,H006)); tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H006),H009)); tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H014),H006))); tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H006),H014),H009)); tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014)),H009)); tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H006),H014,H009)); tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_14 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_15 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_16 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_17 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_18 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H009,H006)); tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_21 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_22 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_24 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_25 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),((H008,H006),H014)),H009)); tree PAUP_26 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006),H009)); tree PAUP_27 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_28 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_29 = [&U] (H002,((((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),H008),H014),H009)); tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014),H009)); tree PAUP_31 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H006)),H014,H009)); tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),(H008,H006)),H009)); tree PAUP_33 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_34 = [&U] (H002,(((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_35 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H014),H006)); tree PAUP_36 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H006),H014),H009)); tree PAUP_37 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H007,H012,H011),(H008,H006),H009)); tree PAUP_38 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),H008,H006),H009)); tree PAUP_39 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H012,H011),H007),H009),(H008,H006))); tree PAUP_40 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_41 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_42 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_43 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006)),H009)); tree PAUP_44 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H006),H014)); tree PAUP_45 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H006),H014))); tree PAUP_46 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H008,H006),H014,H009)); tree PAUP_48 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_49 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_50 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_51 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_52 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_53 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_54 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_57 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_58 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_59 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_60 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_61 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_62 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_63 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_64 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_65 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_66 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_67 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_68 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_69 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_70 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_71 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_72 = [&U] (H002,((((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_73 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_74 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_75 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_76 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_77 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_78 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_79 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_81 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_82 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_83 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_84 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_85 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_86 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_87 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_88 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_89 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009)); End; altree-v1.3.1/test/paup/unrooted_absent/association/caco.paup0000644000175000017500000000201612043315246024542 0ustar vdanjeanvdanjean#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 [H000 222222222222] H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 H000 222222222222 ; end; begin assumptions; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] altree-v1.3.1/test/paup/unrooted_absent/association/nb_cas_control.txt0000644000175000017500000000030312043315246026471 0ustar vdanjeanvdanjeanH002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 altree-v1.3.1/test/paup/unrooted_absent/association/1_caco.asso0000644000175000017500000000414512043315246024767 0ustar vdanjeanvdanjean /----* H010 case/control:7/5 | Site: 5 Sens: 2-->1 |----* H001 case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 -----* 16 case/control:102/74 | | [0] ddl=3 chi2=1.41 p_value_chi2=0.704 | [1] ddl=5 chi2=3.37 p_value_chi2=0.64 | [2] ddl=8 chi2=16.00 p_value_chi2=0.035 | [3] ddl=11 chi2=17.69 p_value_chi2=0.095 | [4] ddl=12 chi2=18.05 p_value_chi2=0.1 | /----* H003 case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 15 case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 case/control:7/7 | Site: 12 Sens: 2-->1 | /----* H013 case/control:2/4 \----* 17 case/control:72/47 | Site: 6 Sens: 2-->1 | Site: 7 Sens: 2-->1 | /----* H007 case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 case/control:1/4 | | Site: 11 Sens: 2-->1 \----* 18 case/control:70/43 | Site: 8 Sens: 2-->1 | Site: 9 Sens: 2-->1 | Site: 10 Sens: 2-->1 |----* H011 case/control:5/1 | /----* H002 case/control:8/6 | | /----* H008 case/control:9/2 | | | Site: 11 Sens: 2-->1 | |----* 19 case/control:13/4 | | | Site: 9 Sens: 1-->2 | | \----* H014 case/control:4/2 | | Site: 10 Sens: 1-->2 \----* 20 case/control:57/25 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 |----* H009 case/control:8/2 | Site: 12 Sens: 2-->1 \----* H006 case/control:28/13 Site: 11 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 altree-v1.3.1/test/paml/0000755000175000017500000000000012252703410015220 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paml/tree_building_using_phyML/0000755000175000017500000000000012252703410022352 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paml/tree_building_using_phyML/trio2.phy_phyml_lk.txt0000644000175000017500000000001412043315246026647 0ustar vdanjeanvdanjean-125.922930 altree-v1.3.1/test/paml/tree_building_using_phyML/trio2.phy_phyml_stat.txt0000644000175000017500000000151712043315246027225 0ustar vdanjeanvdanjean - PHYML v2.4.4 - . Sequence file : [trio2.phy] . Model of nucleotides substitution : GTR . Initial tree : [BIONJ] . Number of taxa : 36 . Likelihood : loglk = -125.92293 . Discrete gamma model : No . Nucleotides frequencies : - f(A)= 0.00000 - f(C)= 0.53889 - f(G)= 0.46111 - f(T)= 0.00000 . GTR relative rate parameters : A <-> C 1.00000 A <-> G 1.00000 A <-> T 1.00000 C <-> G 1.00000 C <-> T 1.00000 G <-> T 1.0 (fixed) . Instantaneous rate matrix : [A---------C---------G---------T------] -2.01217 1.08434 0.92784 0.00000 0.00000 -0.92784 0.92784 0.00000 0.00000 1.08434 -1.08434 0.00000 0.00000 1.08434 0.92784 -2.01217 eg., the instantaneous rate of change from 'C' to 'A' is 0.00000 x 1.00000 = 0.00000 . Time used 0h0m8s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% altree-v1.3.1/test/paml/tree_building_using_phyML/trio2.phy0000644000175000017500000000143612043315246024143 0ustar vdanjeanvdanjean 36 10 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC altree-v1.3.1/test/paml/tree_building_using_phyML/run_phyML0000755000175000017500000000025112043315246024217 0ustar vdanjeanvdanjean#!/bin/sh # In this example, we choose the substitution model GTR (option M # selected three times). For the other options, we keep the default # values phyml_linux altree-v1.3.1/test/paml/tree_building_using_phyML/trio2.phy_phyml_tree.txt0000644000175000017500000000154612043315246027213 0ustar vdanjeanvdanjean(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896); altree-v1.3.1/test/paml/unrooted_present/0000755000175000017500000000000012252703410020617 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paml/unrooted_present/localisation/0000755000175000017500000000000012252703410023300 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paml/unrooted_present/localisation/rub0000644000175000017500000004501612043315246024025 0ustar vdanjeanvdanjean TREE # 1 1 133.7663 203.681194 x: 0.83116 0.87035 1.00000 0.97995 0.85619 0.82543 0.68744 0.74857 0.72267 0.87796 0.83042 0.63684 0.56893 0.85791 0.85122 0.86070 0.77600 0.50342 0.42576 0.82258 0.69057 0.53088 0.77194 0.72684 0.73919 0.79019 0.83061 0.88554 0.51176 0.47183 0.87488 0.77383 0.54118 0.68123 1.00000 0.21839 0.24112 0.21870 0.24735 2 35.6176 193.653085 x: 0.69726 0.77831 0.93502 0.95305 0.84692 0.82719 0.75733 0.82699 0.82083 1.00000 0.98416 0.79832 0.70037 0.88351 0.91141 0.90317 0.75464 0.54565 0.44497 0.81456 0.66194 0.53782 0.74169 0.68913 0.73650 0.76466 0.80333 0.87677 0.57571 0.57004 0.89442 0.74146 0.51264 0.65788 1.00000 0.21839 0.24112 0.21870 0.24735 3 25.5072 192.682883 x: 0.67193 0.76986 0.93158 0.95406 0.85693 0.83489 0.75270 0.81814 0.81092 1.00000 1.00000 0.80535 0.71260 0.87890 0.91854 0.91024 0.74815 0.55229 0.44919 0.80898 0.65429 0.53779 0.73580 0.69962 0.75284 0.76922 0.80358 0.87431 0.59370 0.59149 0.90014 0.73440 0.50804 0.65054 1.00000 0.21839 0.24112 0.21870 0.24735 4 12.3656 189.186188 x: 0.53226 0.84184 0.97682 0.90607 0.91060 0.79789 0.79001 0.84806 0.82990 1.00000 1.00000 0.74883 0.79913 0.83987 1.00000 0.99193 0.66943 0.58992 0.49982 0.81296 0.62403 0.56117 0.68796 0.72790 0.81308 0.71021 0.73510 0.81993 0.66719 0.68915 0.95245 0.68969 0.50634 0.54431 1.00000 0.21839 0.24112 0.21870 0.24735 5 16.7075 188.951289 x: 0.52886 0.84998 0.97690 0.89972 0.91345 0.79591 0.79041 0.84604 0.82915 1.00000 1.00000 0.75470 0.80576 0.84013 1.00000 1.00000 0.66245 0.59098 0.50471 0.81514 0.62343 0.56369 0.68500 0.72884 0.81640 0.70857 0.73576 0.82182 0.67150 0.69403 0.95698 0.68750 0.50768 0.53289 1.00000 0.21839 0.24112 0.21870 0.24735 6 14.1030 187.455217 x: 0.47320 0.88286 0.91235 0.88103 0.95440 0.83684 0.81655 0.84690 0.83177 1.00000 1.00000 0.77109 0.82515 0.81008 1.00000 1.00000 0.59270 0.57362 0.55847 0.80412 0.61448 0.57823 0.66982 0.71752 0.82404 0.70632 0.75409 0.82979 0.67953 0.70669 1.00000 0.68078 0.52152 0.39183 1.00000 0.21839 0.24112 0.21870 0.24735 7 10.2369 186.002567 x: 0.52455 0.88050 0.82774 0.94929 1.00000 0.82767 0.79745 0.84876 0.84592 1.00000 1.00000 0.77673 0.88758 0.81118 1.00000 1.00000 0.51382 0.57421 0.64441 0.74676 0.57459 0.57712 0.64629 0.70566 0.84214 0.71170 0.73690 0.78034 0.71453 0.77564 1.00000 0.65937 0.53707 0.19730 1.00000 0.21839 0.24112 0.21870 0.24735 8 3.1057 185.382228 x: 0.53205 0.89510 0.83778 0.93718 1.00000 0.88975 0.86550 0.84646 0.81155 1.00000 1.00000 0.77628 0.88759 0.77067 1.00000 1.00000 0.50256 0.57127 0.67973 0.78164 0.59023 0.57945 0.63790 0.72320 0.87967 0.72051 0.73360 0.77678 0.75198 0.82328 1.00000 0.64593 0.53174 0.30157 1.00000 0.21839 0.24112 0.21870 0.24735 9 4.6729 183.694279 x: 0.49413 0.99970 0.73564 0.90699 1.00000 0.86362 0.98516 0.74748 0.71295 1.00000 1.00000 0.80525 0.93598 0.76546 1.00000 1.00000 0.41900 0.54889 0.88564 0.80771 0.58354 0.56890 0.59990 0.73913 0.98970 0.70918 0.66050 0.66018 0.86069 1.00000 1.00000 0.59116 0.56596 0.32457 1.00000 0.21839 0.24112 0.21870 0.24735 10 6.6786 183.687904 x: 0.49375 1.00000 0.73572 0.90707 1.00000 0.86362 0.98502 0.74737 0.71309 1.00000 1.00000 0.80533 0.93615 0.76554 1.00000 1.00000 0.41893 0.54893 0.88608 0.80772 0.58350 0.56888 0.59982 0.73925 0.99007 0.70920 0.66049 0.66015 0.86103 1.00000 1.00000 0.59103 0.56598 0.32475 1.00000 0.21839 0.24112 0.21870 0.24735 11 4.9449 183.562472 x: 0.49316 1.00000 0.73837 0.90054 1.00000 0.86313 0.98423 0.75467 0.71243 1.00000 1.00000 0.80683 0.94191 0.76448 1.00000 1.00000 0.42047 0.55190 0.89313 0.80099 0.57977 0.56921 0.59863 0.74303 1.00000 0.70788 0.66271 0.66299 0.87077 1.00000 1.00000 0.58806 0.56701 0.32445 1.00000 0.21839 0.24112 0.21870 0.24735 12 4.9804 183.007516 x: 0.48318 1.00000 0.75629 0.88767 1.00000 0.90233 0.93435 0.79090 0.68499 1.00000 1.00000 0.84237 1.00000 0.73680 1.00000 1.00000 0.43982 0.57054 0.93024 0.79828 0.57683 0.58551 0.59112 0.73050 1.00000 0.64831 0.64261 0.65753 0.93626 1.00000 1.00000 0.56490 0.57825 0.32082 1.00000 0.21839 0.24112 0.21870 0.24735 13 2.8697 182.567061 x: 0.45892 1.00000 0.76717 0.90956 1.00000 0.88478 0.94497 0.80367 0.68761 1.00000 1.00000 0.86797 1.00000 0.73655 1.00000 1.00000 0.44635 0.58177 0.94220 0.82238 0.57809 0.59835 0.57897 0.73945 1.00000 0.64868 0.65026 0.65963 1.00000 1.00000 1.00000 0.54614 0.57982 0.31590 1.00000 0.21839 0.24112 0.21870 0.24735 14 2.6054 181.991346 x: 0.40404 1.00000 0.80013 0.84710 1.00000 0.92443 0.95049 0.74818 0.76668 1.00000 1.00000 0.89510 1.00000 0.80199 1.00000 1.00000 0.40362 0.62727 0.96843 0.80364 0.50643 0.61260 0.50331 0.80521 1.00000 0.68459 0.64211 0.64023 1.00000 1.00000 1.00000 0.46972 0.56451 0.34399 1.00000 0.21839 0.24112 0.21870 0.24735 15 2.6726 181.750691 x: 0.40382 1.00000 0.85906 0.84247 1.00000 0.91493 0.93898 0.70965 0.79086 1.00000 1.00000 0.90498 1.00000 0.75493 1.00000 1.00000 0.32452 0.63352 0.99141 0.79859 0.48772 0.62600 0.45020 0.85409 1.00000 0.69084 0.64156 0.66456 1.00000 1.00000 1.00000 0.42709 0.54476 0.33236 1.00000 0.21839 0.24112 0.21870 0.24735 16 1.6101 181.711375 x: 0.39995 1.00000 0.86074 0.84375 1.00000 0.91498 0.93535 0.71592 0.78542 1.00000 1.00000 0.90114 1.00000 0.75913 1.00000 1.00000 0.32018 0.63410 1.00000 0.79855 0.49159 0.62838 0.44615 0.86057 1.00000 0.68679 0.64370 0.67280 1.00000 1.00000 1.00000 0.42206 0.54133 0.33109 1.00000 0.21839 0.24112 0.21870 0.24735 17 1.6207 181.567500 x: 0.38204 1.00000 0.86607 0.85942 1.00000 0.91147 0.91269 0.76444 0.75793 1.00000 1.00000 0.89803 1.00000 0.80730 1.00000 1.00000 0.31224 0.62792 0.91193 0.77632 0.52714 0.62801 0.43951 0.94343 1.00000 0.65638 0.65102 0.71391 1.00000 1.00000 1.00000 0.40772 0.49632 0.32663 1.00000 0.21839 0.24112 0.21870 0.24735 18 1.2832 181.502950 x: 0.37872 1.00000 0.84217 0.85784 1.00000 0.89720 0.89090 0.79097 0.77434 1.00000 1.00000 0.90598 1.00000 0.78365 1.00000 1.00000 0.33121 0.63643 0.91130 0.77394 0.53044 0.62775 0.44559 0.97791 1.00000 0.64315 0.66409 0.72497 1.00000 1.00000 1.00000 0.40139 0.48460 0.32676 1.00000 0.21839 0.24112 0.21870 0.24735 19 0.9145 181.438971 x: 0.38719 1.00000 0.83818 0.85733 1.00000 0.89605 0.88775 0.79208 0.80319 1.00000 1.00000 0.90210 1.00000 0.79511 1.00000 1.00000 0.36816 0.65662 0.93276 0.79273 0.52174 0.62450 0.46625 0.99558 1.00000 0.63270 0.68154 0.73245 1.00000 1.00000 1.00000 0.41215 0.48004 0.31719 1.00000 0.21839 0.24112 0.21870 0.24735 20 0.9070 181.407089 x: 0.37469 1.00000 0.86206 0.86257 1.00000 0.88887 0.89448 0.79109 0.80005 1.00000 1.00000 0.91051 1.00000 0.79365 1.00000 1.00000 0.39887 0.65444 0.94396 0.77566 0.50300 0.62082 0.48643 0.98326 1.00000 0.63144 0.69382 0.73570 1.00000 1.00000 1.00000 0.43051 0.49140 0.32112 1.00000 0.21839 0.24112 0.21870 0.24735 21 0.3038 181.396925 x: 0.36968 1.00000 0.87031 0.86052 1.00000 0.89018 0.88772 0.80544 0.79855 1.00000 1.00000 0.91251 1.00000 0.79089 1.00000 1.00000 0.39651 0.65355 0.94688 0.77866 0.50879 0.62810 0.48264 0.96955 1.00000 0.65633 0.69687 0.72541 1.00000 1.00000 1.00000 0.42685 0.51074 0.31990 1.00000 0.21839 0.24112 0.21870 0.24735 22 0.2374 181.389906 x: 0.36910 1.00000 0.86393 0.87092 1.00000 0.88861 0.89033 0.80874 0.80205 1.00000 1.00000 0.91382 1.00000 0.78855 1.00000 1.00000 0.38389 0.65582 0.95076 0.77421 0.50675 0.63176 0.47119 0.95469 1.00000 0.65883 0.69362 0.73848 1.00000 1.00000 1.00000 0.41726 0.52504 0.32589 1.00000 0.21839 0.24112 0.21870 0.24735 23 0.0840 181.385485 x: 0.36618 1.00000 0.86675 0.87089 1.00000 0.89179 0.89545 0.80705 0.80264 1.00000 1.00000 0.91348 1.00000 0.78130 1.00000 1.00000 0.38443 0.65384 0.95371 0.78354 0.50691 0.62818 0.46946 0.95829 1.00000 0.65338 0.69531 0.74381 1.00000 1.00000 1.00000 0.41748 0.51948 0.31789 1.00000 0.21839 0.24112 0.21870 0.24735 24 0.1528 181.382276 x: 0.36699 1.00000 0.86426 0.87293 1.00000 0.89109 0.89718 0.81025 0.80149 1.00000 1.00000 0.91951 1.00000 0.77948 1.00000 1.00000 0.37696 0.65024 0.96728 0.78240 0.50939 0.63233 0.47212 0.96664 1.00000 0.64945 0.69966 0.73639 1.00000 1.00000 1.00000 0.42174 0.50688 0.31962 1.00000 0.21839 0.24112 0.21870 0.24735 25 0.0673 181.380919 x: 0.36780 1.00000 0.86245 0.87349 1.00000 0.89066 0.89754 0.81356 0.79650 1.00000 1.00000 0.91943 1.00000 0.77833 1.00000 1.00000 0.37815 0.65584 0.97238 0.78584 0.50230 0.63544 0.47081 0.97022 1.00000 0.64920 0.70105 0.73544 1.00000 1.00000 1.00000 0.41839 0.50604 0.31914 1.00000 0.21839 0.24112 0.21870 0.24735 26 0.0929 181.378150 x: 0.36813 1.00000 0.86468 0.86920 1.00000 0.88868 0.90114 0.81401 0.79563 1.00000 1.00000 0.92044 1.00000 0.77797 1.00000 1.00000 0.38552 0.65313 0.99245 0.78307 0.50790 0.63859 0.46600 0.98184 1.00000 0.64570 0.69697 0.73648 1.00000 1.00000 1.00000 0.40642 0.51438 0.31578 1.00000 0.21839 0.24112 0.21870 0.24735 27 0.1094 181.376533 x: 0.36767 1.00000 0.86471 0.86883 1.00000 0.88833 0.90093 0.81507 0.79568 1.00000 1.00000 0.92060 1.00000 0.77835 1.00000 1.00000 0.38385 0.65208 1.00000 0.78413 0.50726 0.63663 0.46565 0.98549 1.00000 0.64486 0.69610 0.73664 1.00000 1.00000 1.00000 0.40856 0.51771 0.31646 1.00000 0.21839 0.24112 0.21870 0.24735 29 0.6711 181.375400 x: 0.36559 1.00000 0.86413 0.86869 1.00000 0.88850 0.89937 0.81423 0.79524 1.00000 1.00000 0.91892 1.00000 0.77855 1.00000 1.00000 0.38355 0.65197 0.99993 0.78393 0.50720 0.63650 0.46573 0.98544 1.00000 0.64506 0.69639 0.73701 1.00000 1.00000 1.00000 0.40882 0.51752 0.31660 1.00000 0.21839 0.24112 0.21870 0.24735 30 0.6543 181.374395 x: 0.36568 1.00000 0.86448 0.86962 1.00000 0.88968 0.89788 0.81361 0.79529 1.00000 1.00000 0.91686 1.00000 0.77915 1.00000 1.00000 0.38313 0.65190 1.00000 0.78373 0.50722 0.63633 0.46586 0.98562 1.00000 0.64562 0.69701 0.73769 1.00000 1.00000 1.00000 0.40926 0.51732 0.31696 1.00000 0.21839 0.24112 0.21870 0.24735 31 0.1534 181.374112 x: 0.36551 1.00000 0.86420 0.87019 1.00000 0.88884 0.89753 0.81285 0.79741 1.00000 1.00000 0.91657 1.00000 0.78185 1.00000 1.00000 0.38168 0.65192 0.99941 0.78355 0.50780 0.63576 0.46646 0.98479 1.00000 0.64560 0.69753 0.73880 1.00000 1.00000 1.00000 0.41080 0.51654 0.31835 1.00000 0.21839 0.24112 0.21870 0.24735 32 0.3256 181.373976 x: 0.36547 1.00000 0.86410 0.87029 1.00000 0.88871 0.89751 0.81257 0.79780 1.00000 1.00000 0.91657 1.00000 0.78240 1.00000 1.00000 0.38124 0.65191 1.00000 0.78350 0.50797 0.63559 0.46664 0.98452 1.00000 0.64557 0.69764 0.73906 1.00000 1.00000 1.00000 0.41125 0.51631 0.31873 1.00000 0.21839 0.24112 0.21870 0.24735 33 0.1049 181.373834 x: 0.36576 1.00000 0.86373 0.87030 1.00000 0.88944 0.89807 0.81100 0.79719 1.00000 1.00000 0.91692 1.00000 0.78233 1.00000 1.00000 0.37927 0.65170 0.99991 0.78336 0.50860 0.63485 0.46745 0.98324 1.00000 0.64527 0.69773 0.73961 1.00000 1.00000 1.00000 0.41319 0.51529 0.31996 1.00000 0.21839 0.24112 0.21870 0.24735 34 0.0994 181.373770 x: 0.36581 1.00000 0.86381 0.87034 1.00000 0.88934 0.89877 0.81111 0.79723 1.00000 1.00000 0.91609 1.00000 0.78182 1.00000 1.00000 0.37824 0.65159 0.99992 0.78328 0.50883 0.63444 0.46791 0.98232 1.00000 0.64513 0.69767 0.73962 1.00000 1.00000 1.00000 0.41423 0.51462 0.32021 1.00000 0.21839 0.24112 0.21870 0.24735 35 0.0489 181.373711 x: 0.36591 1.00000 0.86458 0.87063 1.00000 0.88890 0.89792 0.81131 0.79728 1.00000 1.00000 0.91625 1.00000 0.78117 1.00000 1.00000 0.37728 0.65158 0.99993 0.78317 0.50876 0.63399 0.46846 0.98100 1.00000 0.64563 0.69784 0.73935 1.00000 1.00000 1.00000 0.41534 0.51354 0.31952 1.00000 0.21839 0.24112 0.21870 0.24735 36 0.0609 181.373673 x: 0.36579 1.00000 0.86466 0.87043 1.00000 0.88961 0.89762 0.81183 0.79741 1.00000 1.00000 0.91637 1.00000 0.78135 1.00000 1.00000 0.37693 0.65164 0.99993 0.78312 0.50860 0.63379 0.46876 0.97987 1.00000 0.64611 0.69799 0.73912 1.00000 1.00000 1.00000 0.41586 0.51266 0.31883 1.00000 0.21839 0.24112 0.21870 0.24735 37 0.0492 181.373641 x: 0.36633 1.00000 0.86438 0.86995 1.00000 0.88956 0.89732 0.81196 0.79695 1.00000 1.00000 0.91602 1.00000 0.78182 1.00000 1.00000 0.37700 0.65165 0.99994 0.78309 0.50838 0.63377 0.46888 0.97875 1.00000 0.64668 0.69819 0.73906 1.00000 1.00000 1.00000 0.41597 0.51189 0.31845 1.00000 0.21839 0.24112 0.21870 0.24735 38 0.0336 181.373591 x: 0.36623 1.00000 0.86444 0.87095 1.00000 0.88960 0.89752 0.81149 0.79648 1.00000 1.00000 0.91564 1.00000 0.78221 1.00000 1.00000 0.37783 0.65156 0.99996 0.78327 0.50827 0.63414 0.46869 0.97689 1.00000 0.64738 0.69837 0.73931 1.00000 1.00000 1.00000 0.41531 0.51075 0.31848 1.00000 0.21839 0.24112 0.21870 0.24735 39 0.0327 181.373564 x: 0.36642 1.00000 0.86431 0.87089 1.00000 0.88986 0.89717 0.81102 0.79717 1.00000 1.00000 0.91537 1.00000 0.78169 1.00000 1.00000 0.37832 0.65148 0.99997 0.78332 0.50838 0.63440 0.46842 0.97601 1.00000 0.64755 0.69836 0.73958 1.00000 1.00000 1.00000 0.41473 0.51041 0.31894 1.00000 0.21839 0.24112 0.21870 0.24735 40 0.0095 181.373548 x: 0.36622 1.00000 0.86498 0.87054 1.00000 0.89000 0.89718 0.81098 0.79713 1.00000 1.00000 0.91523 1.00000 0.78183 1.00000 1.00000 0.37805 0.65160 0.99998 0.78280 0.50846 0.63428 0.46805 0.97661 1.00000 0.64748 0.69841 0.73996 1.00000 1.00000 1.00000 0.41458 0.51118 0.31919 1.00000 0.21839 0.24112 0.21870 0.24735 41 0.0151 181.373534 x: 0.36622 1.00000 0.86470 0.87085 1.00000 0.89010 0.89689 0.81114 0.79704 1.00000 1.00000 0.91507 1.00000 0.78203 1.00000 1.00000 0.37765 0.65162 0.99999 0.78306 0.50872 0.63415 0.46793 0.97758 1.00000 0.64708 0.69816 0.73974 1.00000 1.00000 1.00000 0.41471 0.51212 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735 42 0.0134 181.373531 x: 0.36619 1.00000 0.86447 0.87096 1.00000 0.89008 0.89695 0.81115 0.79710 1.00000 1.00000 0.91507 1.00000 0.78195 1.00000 1.00000 0.37761 0.65157 0.99999 0.78313 0.50864 0.63413 0.46803 0.97803 1.00000 0.64720 0.69835 0.73981 1.00000 1.00000 1.00000 0.41485 0.51231 0.31919 1.00000 0.21839 0.24112 0.21870 0.24735 43 0.0050 181.373530 x: 0.36619 1.00000 0.86448 0.87096 1.00000 0.89009 0.89697 0.81108 0.79714 1.00000 1.00000 0.91504 1.00000 0.78197 1.00000 1.00000 0.37774 0.65153 0.99999 0.78308 0.50843 0.63417 0.46823 0.97825 1.00000 0.64707 0.69834 0.73972 1.00000 1.00000 1.00000 0.41496 0.51228 0.31921 1.00000 0.21839 0.24112 0.21870 0.24735 44 0.0030 181.373530 x: 0.36618 1.00000 0.86453 0.87092 1.00000 0.89009 0.89696 0.81108 0.79712 1.00000 1.00000 0.91504 1.00000 0.78198 1.00000 1.00000 0.37781 0.65154 0.99999 0.78314 0.50848 0.63421 0.46833 0.97835 1.00000 0.64702 0.69837 0.73973 1.00000 1.00000 1.00000 0.41500 0.51219 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735 45 0.0011 181.373530 x: 0.36618 1.00000 0.86452 0.87092 1.00000 0.89009 0.89696 0.81110 0.79712 1.00000 1.00000 0.91504 1.00000 0.78197 1.00000 1.00000 0.37781 0.65155 0.99999 0.78312 0.50849 0.63420 0.46833 0.97837 1.00000 0.64700 0.69837 0.73974 1.00000 1.00000 1.00000 0.41499 0.51215 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735 46 0.0007 181.373530 x: 0.36618 1.00000 0.86452 0.87092 1.00000 0.89009 0.89696 0.81110 0.79712 1.00000 1.00000 0.91504 1.00000 0.78197 1.00000 1.00000 0.37781 0.65155 0.99999 0.78312 0.50849 0.63420 0.46833 0.97837 1.00000 0.64700 0.69837 0.73974 1.00000 1.00000 1.00000 0.41499 0.51215 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735 altree-v1.3.1/test/paml/unrooted_present/localisation/trio2.loc0000644000175000017500000000204312043315246025041 0ustar vdanjeanvdanjeanLocalisation method using S-character Results: site number 8 sens C-->G V_i = 1.98507947965328 site number 5 sens G-->C V_i = 1.68559076178538 site number 4 sens C-->G V_i = 1.18644749469062 site number 10 sens C-->G V_i = 0.7974522228289 site number 7 sens G-->C V_i = -0.328797974610715 site number 3 sens G-->C V_i = -0.43495883620084 site number 3 sens C-->G V_i = -0.43495883620084 site number 8 sens G-->C V_i = -0.464990554975277 site number 9 sens G-->C V_i = -0.493196961916072 site number 2 sens C-->G V_i = -0.493196961916072 site number 4 sens G-->C V_i = -0.493196961916072 site number 7 sens C-->G V_i = -0.519875244910036 site number 6 sens C-->G V_i = -0.545249756806271 site number 1 sens C-->G V_i = -0.569494797451499 site number 9 sens C-->G V_i = -0.569494797451499 site number 2 sens G-->C V_i = -0.569494797451499 site number 6 sens G-->C V_i = -0.677834389404565 site number 5 sens C-->G V_i = -0.735214622093808 site number 1 sens G-->C V_i = -0.900450337781496 site number 10 sens G-->C V_i = -0.929981109950554 altree-v1.3.1/test/paml/unrooted_present/localisation/et_trio2.phy0000644000175000017500000000121612043315246025555 0ustar vdanjeanvdanjean36 11 H019 GCGGCGCCCC? H026 GCCCGCGGGCG H004 GCGGCCGGGCG H020 CGGGGCCCCGC H034 GCGGGCCCCGG H027 CCCCGGCCCG? H023 CCCCGCGGGCC H016 GCGCCGGGGC? H002 CCCCCGGGGCG H015 CGGGGCCCGCC H006 CGGGGCGGGC? H001 CGGGGCCCCCC H010 CCGCGCCCCGC H028 CGGGGCCGCCG H024 GCGGCGGGCCG H017 CCCCGCCCCCC H009 CCCCGGGCGCC H007 CCGCGCGGGCC H033 GCGCGCCCCGC H008 GCGGCGGGGCG H029 GCGGGCCCCCC H003 CCGCCCCCCCG H035 CCGCGCGGGGG H013 GCGGCGCCCGG H032 GCGCCGCGGCC H025 GCGGGCGGGC? H021 GCCCCGGCGCG H030 CCGGGCGGCC? H031 GCGGCGGCGCG H012 CCCCGGGGGC? H005 GCGGCGGGGG? H011 CCGCGCCCCCC H022 GCGGCCCCCGG H014 GCCCGCCCCC? H018 CCGGGCCCCC? OUTG CCGGGCGGGC? altree-v1.3.1/test/paml/unrooted_present/localisation/nb_cas_controls.txt0000644000175000017500000000104212043315246027212 0ustar vdanjeanvdanjeanH019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 OUTG m004 c004 altree-v1.3.1/test/paml/unrooted_present/localisation/baseml.ctl0000644000175000017500000000322612043315246025256 0ustar vdanjeanvdanjean seqfile = et_trio2.phy treefile = trio2.phy_phyml_tree.txt outfile = mlb * main result file noisy = 9 * 0,1,2,3: how much rubbish on the screen verbose = 1 * 1: detailed output, 0: concise output runmode = 0 * 0: user tree; 1: semi-automatic; 2: automatic * 3: StepwiseAddition; (4,5):PerturbationNNI model = 7 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85 * 5:T92, 6:TN93, 7:REV, 8:UNREST, 9:REVu; 10:UNRESTu Mgene = 0 * 0:rates, 1:separate; 2:diff pi, 3:diff kapa, 4:all diff * ndata = 1 clock = 1 * 0:no clock, 1:clock; 2:local clock; 3:CombinedAnalysis fix_kappa = 0 * 0: estimate kappa; 1: fix kappa at value below kappa = 5 * initial or fixed kappa fix_alpha = 1 * 0: estimate alpha; 1: fix alpha at value below alpha = 0 * initial or fixed alpha, 0:infinity (constant rate) Malpha = 0 * 1: different alpha's for genes, 0: one alpha ncatG = 5 * # of categories in the dG, AdG, or nparK models of rates nparK = 0 * rate-class models. 1:rK, 2:rK&fK, 3:rK&MK(1/K), 4:rK&MK nhomo = 0 * 0 & 1: homogeneous, 2: kappa for branches, 3: N1, 4: N2 getSE = 0 * 0: don't want them, 1: want S.E.s of estimates RateAncestor = 1 * (0,1,2): rates (alpha>0) or ancestral states Small_Diff = 7e-6 cleandata = 0 * remove sites with ambiguity data (1:yes, 0:no)? * icode = 0 * (with RateAncestor=1. try "GC" in data,model=4,Mgene=4) * fix_blength = -1 * 0: ignore, -1: random, 1: initial, 2: fixed method = 0 * 0: simultaneous; 1: one branch at a time altree-v1.3.1/test/paml/unrooted_present/localisation/mlb0000644000175000017500000005140512043315246024006 0ustar vdanjeanvdanjean seed used = 30455833 H019 GCGGCGCCCC ? H026 GCCCGCGGGC G H004 GCGGCCGGGC G H020 CGGGGCCCCG C H034 GCGGGCCCCG G H027 CCCCGGCCCG ? H023 CCCCGCGGGC C H016 GCGCCGGGGC ? H002 CCCCCGGGGC G H015 CGGGGCCCGC C H006 CGGGGCGGGC ? H001 CGGGGCCCCC C H010 CCGCGCCCCG C H028 CGGGGCCGCC G H024 GCGGCGGGCC G H017 CCCCGCCCCC C H009 CCCCGGGCGC C H007 CCGCGCGGGC C H033 GCGCGCCCCG C H008 GCGGCGGGGC G H029 GCGGGCCCCC C H003 CCGCCCCCCC G H035 CCGCGCGGGG G H013 GCGGCGCCCG G H032 GCGCCGCGGC C H025 GCGGGCGGGC ? H021 GCCCCGGCGC G H030 CCGGGCGGCC ? H031 GCGGCGGCGC G H012 CCCCGGGGGC ? H005 GCGGCGGGGG ? H011 CCGCGCCCCC C H022 GCGGCCCCCG G H014 GCCCGCCCCC ? H018 CCGGGCCCCC ? OUTG CCGGGCGGGC ? BASEML (in paml 3.14, January 2004) et_trio2.phy REV Global clock ns = 36 ls = 11 # site patterns = 11 1 1 1 1 1 1 1 1 1 1 1 H019 GCGGCGCCCC ? H026 ..CCGCGGG. G H004 .....CGGG. G H020 CG..GC...G C H034 ....GC...G G H027 C.CCG....G ? H023 C.CCGCGGG. C H016 ...C..GGG. ? H002 C.CC..GGG. G H015 CG..GC..G. C H006 CG..GCGGG. ? H001 CG..GC.... C H010 C..CGC...G C H028 CG..GC.G.. G H024 ......GG.. G H017 C.CCGC.... C H009 C.CCG.G.G. C H007 C..CGCGGG. C H033 ...CGC...G C H008 ......GGG. G H029 ....GC.... C H003 C..C.C.... G H035 C..CGCGGGG G H013 .........G G H032 ...C...GG. C H025 ....GCGGG. ? H021 ..CC..G.G. G H030 C...GCGG.. ? H031 ......G.G. G H012 C.CCG.GGG. ? H005 ......GGGG ? H011 C..CGC.... C H022 .....C...G G H014 ..CCGC.... ? H018 C...GC.... ? OUTG C...GCGGG. ? Frequencies.. T C A G H019 0.0000 0.6000 0.0000 0.4000 H026 0.0000 0.4545 0.0000 0.5455 H004 0.0000 0.3636 0.0000 0.6364 H020 0.0000 0.5455 0.0000 0.4545 H034 0.0000 0.4545 0.0000 0.5455 H027 0.0000 0.7000 0.0000 0.3000 H023 0.0000 0.6364 0.0000 0.3636 H016 0.0000 0.4000 0.0000 0.6000 H002 0.0000 0.5455 0.0000 0.4545 H015 0.0000 0.5455 0.0000 0.4545 H006 0.0000 0.3000 0.0000 0.7000 H001 0.0000 0.6364 0.0000 0.3636 H010 0.0000 0.7273 0.0000 0.2727 H028 0.0000 0.4545 0.0000 0.5455 H024 0.0000 0.3636 0.0000 0.6364 H017 0.0000 0.9091 0.0000 0.0909 H009 0.0000 0.6364 0.0000 0.3636 H007 0.0000 0.5455 0.0000 0.4545 H033 0.0000 0.6364 0.0000 0.3636 H008 0.0000 0.2727 0.0000 0.7273 H029 0.0000 0.6364 0.0000 0.3636 H003 0.0000 0.8182 0.0000 0.1818 H035 0.0000 0.3636 0.0000 0.6364 H013 0.0000 0.4545 0.0000 0.5455 H032 0.0000 0.5455 0.0000 0.4545 H025 0.0000 0.3000 0.0000 0.7000 H021 0.0000 0.5455 0.0000 0.4545 H030 0.0000 0.5000 0.0000 0.5000 H031 0.0000 0.3636 0.0000 0.6364 H012 0.0000 0.5000 0.0000 0.5000 H005 0.0000 0.2000 0.0000 0.8000 H011 0.0000 0.8182 0.0000 0.1818 H022 0.0000 0.5455 0.0000 0.4545 H014 0.0000 0.8000 0.0000 0.2000 H018 0.0000 0.7000 0.0000 0.3000 OUTG 0.0000 0.4000 0.0000 0.6000 Average 0.0000 0.5351 0.0000 0.4649 (Ambiguity characters are used to calculate freqs.) # constant sites: 0 (0.00%) Distances: TN93 (kappa) (alpha set at 0.00) This matrix is not used in later m.l. analysis. (Pairwise deletion.) H019 H026 9.0000( 0.0000) H004 nan(999.0000) nan(999.0000) H020 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H034 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H027 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H023 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H016 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H002 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H015 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H006 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H001 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H010 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H028 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H024 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H017 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H009 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H007 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H033 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H008 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H029 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H003 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H035 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H013 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H032 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H025 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H021 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H030 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H031 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H012 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H005 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H011 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H022 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H014 nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H018 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) OUTG 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) TREE # 1: (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); MP score: -1.00 lnL(ntime: 34 np: 39): -181.373530 +0.000000 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 0.36618 0.36618 0.31657 0.27571 0.27571 0.24541 0.22012 0.17854 0.14232 0.14232 0.14232 0.13022 0.13022 0.10183 0.10183 0.10183 0.03847 0.06635 0.06635 0.10198 0.05186 0.03289 0.01540 0.24010 0.24010 0.15534 0.10849 0.08025 0.08025 0.08025 0.08025 0.03330 0.16213 0.11689 1.00000 0.21839 0.24112 0.21870 0.24735 tree length = 5.72033 (((((((((((((((((H010, H033), (H027, (H017, H014))), H011), H003), H018), (((H022, (H013, H019)), H034), H029)), H020), H001), H015), H028), H030), ((H006, ((((((H031, H005), (H032, H016)), H008), H024), H004), H025)), OUTG)), H035), H007), (H026, H023)), H012), (H021, H002), H009); (((((((((((((((((H010: 0.038473, H033: 0.038473): 0.063358, (H027: 0.066349, (H017: 0.066348, H014: 0.066348): 0.000001): 0.035483): 0.000000, H011: 0.101831): 0.000000, H003: 0.101831): 0.028393, H018: 0.130224): 0.000000, (((H022: 0.032888, (H013: 0.015402, H019: 0.015402): 0.017485): 0.018969, H034: 0.051857): 0.050124, H029: 0.101981): 0.028243): 0.012091, H020: 0.142315): 0.000000, H001: 0.142315): 0.000000, H015: 0.142316): 0.036222, H028: 0.178537): 0.041581, H030: 0.220119): 0.025287, ((H006: 0.240097, ((((((H031: 0.080251, H005: 0.080251): 0.000000, (H032: 0.033304, H016: 0.033304): 0.046948): 0.000000, H008: 0.080251): 0.000000, H024: 0.080251): 0.028235, H004: 0.108486): 0.046856, H025: 0.155343): 0.084754): 0.000000, OUTG: 0.240097): 0.005308): 0.030304, H035: 0.275709): 0.000000, H007: 0.275709): 0.040862, (H026: 0.162133, H023: 0.162133): 0.154438): 0.049611, H012: 0.366183): 0.000000, (H021: 0.116893, H002: 0.116893): 0.249290, H009: 0.366183); Detailed output identifying parameters Parameters in the rate matrix (REV) (Yang 1994 J Mol Evol 39:105-111): Rate parameters: 1.00000 0.21839 0.24112 0.21870 0.24735 Base frequencies: 0.00000 0.53506 0.00000 0.46494 Rate matrix Q, Average Ts/Tv = 0.0000 -5.258684 4.347769 0.000000 0.910915 0.000000 -0.934466 0.000000 0.934466 0.000000 0.950863 -4.728782 3.777919 0.000000 1.075419 0.000000 -1.075419 altree-v1.3.1/test/paml/unrooted_present/localisation/lnf0000644000175000017500000000164012043315246024007 0ustar vdanjeanvdanjean -1 11 11 1 1 1 -21.3504627001 0.0000 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC 2 1 -13.9253593463 0.0000 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC 3 1 -12.1470280971 0.0001 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG 4 1 -15.7042220229 0.0000 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG 5 1 -16.1598302040 0.0000 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG 6 1 -18.4691902274 0.0000 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC 7 1 -12.2943243678 0.0001 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG 8 1 -14.4446212953 0.0000 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG 9 1 -13.8336215444 0.0000 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG 10 1 -24.1672908333 0.0000 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC 11 1 -18.8775789219 0.0000 ?GGCG?C?GC?CCGGCCCCGCGGGC?G?G??CG???altree-v1.3.1/test/paml/unrooted_present/localisation/trio2.phy0000644000175000017500000000143612043315246025071 0ustar vdanjeanvdanjean 36 10 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC altree-v1.3.1/test/paml/unrooted_present/localisation/rst10000644000175000017500000000000112043315246024107 0ustar vdanjeanvdanjean altree-v1.3.1/test/paml/unrooted_present/localisation/run-prog0000755000175000017500000000116612043315246025007 0ustar vdanjeanvdanjean#!/bin/sh -x # To obtain the file containing the sequences WITH the character S ../../../../altree-add-S -i trio2.phy -j \ nb_cas_controls.txt -o et_trio2.phy -e 1 -t DNA -p 0.5 # paml is run on the tree reconstructed by phyml WITHOUT the character # S (file "trio2.phy_phyml_tree.txt" as first input file), but the # character S is included in the apomorphy list (file "et_trio2.phy as # second input file) baseml # To perform the localisation test ../../../../altree -i rst \ -j nb_cas_control.txt -t DNA -p paml --tree-to-analyse 1 \ --s-site-number 11 --s-site-characters "C->G" \ --co-evo double -l -o trio2.loc altree-v1.3.1/test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt0000644000175000017500000000154612043315246030141 0ustar vdanjeanvdanjean(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896); altree-v1.3.1/test/paml/unrooted_present/localisation/2base.t0000644000175000017500000001314312043315246024467 0ustar vdanjeanvdanjean 36 H019 H026 9.0000 H004 nan nan H020 9.0000 9.0000 9.0000 H034 nan 9.0000 nan nan H027 9.0000 9.0000 9.0000 nan nan H023 9.0000 nan nan 9.0000 9.0000 9.0000 H016 nan nan nan 9.0000 9.0000 9.0000 nan H002 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan H015 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 H006 9.0000 nan nan nan 9.0000 9.0000 nan 9.0000 9.0000 nan H001 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan nan H010 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan H028 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan nan nan H024 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan H017 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan nan 9.0000 9.0000 H009 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan H007 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan nan nan 9.0000 nan nan H033 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan H008 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan 9.0000 H029 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 nan nan 9.0000 H003 nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan H035 9.0000 nan nan 9.0000 nan 9.0000 nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 nan H013 nan 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 H032 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan H025 9.0000 nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 nan H021 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan 9.0000 9.0000 9.0000 nan nan 9.0000 H030 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan nan nan nan nan 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 H031 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 H012 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan 9.0000 H005 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 H011 nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 H022 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 H014 nan nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan H018 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan OUTG 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan altree-v1.3.1/test/paml/unrooted_present/localisation/rst0000644000175000017500000003267612043315246024055 0ustar vdanjeanvdanjeanSupplemental results for BASEML seqf: et_trio2.phy treef: trio2.phy_phyml_tree.txt TREE # 1 Ancestral reconstruction by BASEML. (((((((((((((((((H010: 0.038473, H033: 0.038473): 0.063358, (H027: 0.066349, (H017: 0.066348, H014: 0.066348): 0.000001): 0.035483): 0.000000, H011: 0.101831): 0.000000, H003: 0.101831): 0.028393, H018: 0.130224): 0.000000, (((H022: 0.032888, (H013: 0.015402, H019: 0.015402): 0.017485): 0.018969, H034: 0.051857): 0.050124, H029: 0.101981): 0.028243): 0.012091, H020: 0.142315): 0.000000, H001: 0.142315): 0.000000, H015: 0.142316): 0.036222, H028: 0.178537): 0.041581, H030: 0.220119): 0.025287, ((H006: 0.240097, ((((((H031: 0.080251, H005: 0.080251): 0.000000, (H032: 0.033304, H016: 0.033304): 0.046948): 0.000000, H008: 0.080251): 0.000000, H024: 0.080251): 0.028235, H004: 0.108486): 0.046856, H025: 0.155343): 0.084754): 0.000000, OUTG: 0.240097): 0.005308): 0.030304, H035: 0.275709): 0.000000, H007: 0.275709): 0.040862, (H026: 0.162133, H023: 0.162133): 0.154438): 0.049611, H012: 0.366183): 0.000000, (H021: 0.116893, H002: 0.116893): 0.249290, H009: 0.366183); (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 tree with node labels for Rod Page's TreeView (((((((((((((((((13_H010: 0.038473, 19_H033: 0.038473) 53 : 0.063358, (6_H027: 0.066349, (16_H017: 0.066348, 34_H014: 0.066348) 55 : 0.000001) 54 : 0.035483) 52 : 0.000000, 32_H011: 0.101831) 51 : 0.000000, 22_H003: 0.101831) 50 : 0.028393, 35_H018: 0.130224) 49 : 0.000000, (((33_H022: 0.032888, (24_H013: 0.015402, 1_H019: 0.015402) 59 : 0.017485) 58 : 0.018969, 5_H034: 0.051857) 57 : 0.050124, 21_H029: 0.101981) 56 : 0.028243) 48 : 0.012091, 4_H020: 0.142315) 47 : 0.000000, 12_H001: 0.142315) 46 : 0.000000, 10_H015: 0.142316) 45 : 0.036222, 14_H028: 0.178537) 44 : 0.041581, 28_H030: 0.220119) 43 : 0.025287, ((11_H006: 0.240097, ((((((29_H031: 0.080251, 31_H005: 0.080251) 67 : 0.000000, (25_H032: 0.033304, 8_H016: 0.033304) 68 : 0.046948) 66 : 0.000000, 20_H008: 0.080251) 65 : 0.000000, 15_H024: 0.080251) 64 : 0.028235, 3_H004: 0.108486) 63 : 0.046856, 26_H025: 0.155343) 62 : 0.084754) 61 : 0.000000, 36_OUTG: 0.240097) 60 : 0.005308) 42 : 0.030304, 23_H035: 0.275709) 41 : 0.000000, 18_H007: 0.275709) 40 : 0.040862, (2_H026: 0.162133, 7_H023: 0.162133) 69 : 0.154438) 39 : 0.049611, 30_H012: 0.366183) 38 : 0.000000, (27_H021: 0.116893, 9_H002: 0.116893) 70 : 0.249290, 17_H009: 0.366183) 37 ; Nodes 37 to 70 are ancestral Unreliable at sites with alignment gaps (1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650). Prob of best character at each node, listed by site Site Freq Data: 1 1 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC: C(0.987) C(0.987) C(0.991) C(0.999) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(0.937) C(0.997) C(0.997) G(0.852) G(0.997) G(1.000) G(1.000) C(0.995) C(0.995) G(0.921) G(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.856) C(0.789) 2 1 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC: C(0.998) C(0.998) C(0.999) C(0.998) C(0.998) C(0.989) C(0.923) G(0.557) G(0.623) G(0.623) G(0.623) C(0.993) C(0.993) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(1.000) C(1.000) C(1.000) C(0.989) C(0.989) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.996) C(0.996) 3 1 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG: C(0.889) C(0.889) C(0.730) G(0.966) G(0.966) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.991) C(0.991) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.957) C(0.991) 4 1 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG: C(0.983) C(0.983) C(0.963) C(0.871) C(0.871) G(0.991) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(0.998) G(0.998) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.996) G(0.996) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.975) C(0.991) C(0.996) 5 1 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG: G(0.975) G(0.975) G(0.996) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.994) G(0.884) C(0.972) C(1.000) G(0.999) G(0.999) G(0.801) C(0.948) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.996) C(0.947) 6 1 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC: G(0.662) G(0.662) C(0.906) C(0.994) C(0.994) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.997) C(0.997) C(1.000) C(0.994) C(0.958) G(0.988) C(0.999) C(0.999) C(0.954) C(0.802) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.982) G(0.981) 7 1 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG: G(0.998) G(0.998) G(0.999) G(1.000) G(1.000) G(0.999) G(0.901) C(0.874) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.999) G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.958) G(0.996) G(0.997) 8 1 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG: G(0.951) G(0.951) G(0.993) G(1.000) G(1.000) G(1.000) G(0.980) G(0.822) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.995) G(0.779) 9 1 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG: G(0.998) G(0.998) G(0.999) G(0.999) G(0.999) G(0.991) C(0.697) C(0.955) C(0.998) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.996) G(0.996) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.996) G(0.997) 10 1 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC: C(0.998) C(0.998) C(0.999) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(0.999) G(0.978) C(0.997) C(0.997) C(0.945) G(0.958) G(0.974) G(0.959) C(1.000) C(1.000) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.996) C(0.996) 11 1 ?GGCG?C?GC?CCGGCCCCGCGGGC?G?G??CG???: G(0.743) G(0.743) G(0.753) G(0.760) G(0.760) G(0.764) G(0.696) G(0.587) C(0.995) C(0.995) C(0.995) C(0.995) C(0.995) C(0.999) C(0.999) C(0.999) C(1.000) C(0.997) C(0.997) C(0.939) G(0.982) G(0.999) G(0.999) G(0.772) G(0.772) G(0.911) G(0.994) G(0.999) G(0.999) G(0.999) G(0.999) C(0.587) G(0.690) G(0.985) Summary of changes along branches. Check root for directions of change. Branch 1: 37..38 Branch 2: 38..39 6 G 0.662 -> C 0.906 Branch 3: 39..40 3 C 0.730 -> G 0.966 Branch 4: 40..41 Branch 5: 41..42 4 C 0.871 -> G 0.991 Branch 6: 42..43 9 G 0.991 -> C 0.697 Branch 7: 43..44 2 C 0.923 -> G 0.557 7 G 0.901 -> C 0.874 Branch 8: 44..45 8 G 0.822 -> C 0.999 11 G 0.587 -> C 0.995 Branch 9: 45..46 Branch 10: 46..47 Branch 11: 47..48 2 G 0.623 -> C 0.993 Branch 12: 48..49 Branch 13: 49..50 4 G 0.998 -> C 0.999 Branch 14: 50..51 Branch 15: 51..52 Branch 16: 52..53 10 C 0.999 -> G 0.978 Branch 17: 53..13 (H010) Branch 18: 53..19 (H033) 1 C 0.937 -> G Branch 19: 52..54 3 G 1.000 -> C 0.991 Branch 20: 54..6 (H027) 6 C 0.997 -> G 10 C 0.997 -> G 11 C 0.997 -> ? Branch 21: 54..55 Branch 22: 55..16 (H017) Branch 23: 55..34 (H014) 1 C 0.997 -> G 11 C 0.997 -> ? Branch 24: 51..32 (H011) Branch 25: 50..22 (H003) 5 G 1.000 -> C 11 C 0.999 -> G Branch 26: 49..35 (H018) 11 C 0.995 -> ? Branch 27: 48..56 1 C 0.998 -> G 0.852 Branch 28: 56..57 10 C 0.945 -> G 0.958 11 C 0.939 -> G 0.982 Branch 29: 57..58 5 G 0.884 -> C 0.972 Branch 30: 58..33 (H022) Branch 31: 58..59 6 C 0.958 -> G 0.988 Branch 32: 59..24 (H013) Branch 33: 59..1 (H019) 10 G 0.959 -> C 11 G 0.999 -> ? Branch 34: 57..5 (H034) Branch 35: 56..21 (H029) Branch 36: 47..4 (H020) 10 C 1.000 -> G Branch 37: 46..12 (H001) Branch 38: 45..10 (H015) 9 C 0.998 -> G Branch 39: 44..14 (H028) Branch 40: 43..28 (H030) 11 G 0.696 -> ? Branch 41: 42..60 Branch 42: 60..61 Branch 43: 61..11 (H006) 2 C 0.989 -> G 11 G 0.772 -> ? Branch 44: 61..62 1 C 0.995 -> G 0.921 Branch 45: 62..63 5 G 0.801 -> C 0.948 Branch 46: 63..64 6 C 0.802 -> G 1.000 Branch 47: 64..65 Branch 48: 65..66 Branch 49: 66..67 Branch 50: 67..29 (H031) 8 G 1.000 -> C Branch 51: 67..31 (H005) 10 C 1.000 -> G 11 G 0.999 -> ? Branch 52: 66..68 4 G 1.000 -> C 0.975 11 G 0.999 -> C 0.587 Branch 53: 68..25 (H032) 7 G 0.958 -> C Branch 54: 68..8 (H016) 11 C 0.587 -> ? Branch 55: 65..20 (H008) Branch 56: 64..15 (H024) 9 G 1.000 -> C Branch 57: 63..3 (H004) Branch 58: 62..26 (H025) 11 G 0.911 -> ? Branch 59: 60..36 (OUTG) 11 G 0.772 -> ? Branch 60: 41..23 (H035) 10 C 0.998 -> G Branch 61: 40..18 (H007) 11 G 0.760 -> C Branch 62: 39..69 Branch 63: 69..2 (H026) 1 C 0.856 -> G Branch 64: 69..7 (H023) 11 G 0.690 -> C Branch 65: 38..30 (H012) 11 G 0.743 -> ? Branch 66: 37..70 5 G 0.975 -> C 0.947 Branch 67: 70..27 (H021) 1 C 0.789 -> G 8 G 0.779 -> C Branch 68: 70..9 (H002) Branch 69: 37..17 (H009) 8 G 0.951 -> C 11 G 0.743 -> C List of extant and reconstructed sequences H019 GCGGCGCCCC ? H026 GCCCGCGGGC G H004 GCGGCCGGGC G H020 CGGGGCCCCG C H034 GCGGGCCCCG G H027 CCCCGGCCCG ? H023 CCCCGCGGGC C H016 GCGCCGGGGC ? H002 CCCCCGGGGC G H015 CGGGGCCCGC C H006 CGGGGCGGGC ? H001 CGGGGCCCCC C H010 CCGCGCCCCG C H028 CGGGGCCGCC G H024 GCGGCGGGCC G H017 CCCCGCCCCC C H009 CCCCGGGCGC C H007 CCGCGCGGGC C H033 GCGCGCCCCG C H008 GCGGCGGGGC G H029 GCGGGCCCCC C H003 CCGCCCCCCC G H035 CCGCGCGGGG G H013 GCGGCGCCCG G H032 GCGCCGCGGC C H025 GCGGGCGGGC ? H021 GCCCCGGCGC G H030 CCGGGCGGCC ? H031 GCGGCGGCGC G H012 CCCCGGGGGC ? H005 GCGGCGGGGG ? H011 CCGCGCCCCC C H022 GCGGCCCCCG G H014 GCCCGCCCCC ? H018 CCGGGCCCCC ? OUTG CCGGGCGGGC ? node #37 CCCCGGGGGC G node #38 CCCCGGGGGC G node #39 CCCCGCGGGC G node #40 CCGCGCGGGC G node #41 CCGCGCGGGC G node #42 CCGGGCGGGC G node #43 CCGGGCGGCC G node #44 CGGGGCCGCC G node #45 CGGGGCCCCC C node #46 CGGGGCCCCC C node #47 CGGGGCCCCC C node #48 CCGGGCCCCC C node #49 CCGGGCCCCC C node #50 CCGCGCCCCC C node #51 CCGCGCCCCC C node #52 CCGCGCCCCC C node #53 CCGCGCCCCG C node #54 CCCCGCCCCC C node #55 CCCCGCCCCC C node #56 GCGGGCCCCC C node #57 GCGGGCCCCG G node #58 GCGGCCCCCG G node #59 GCGGCGCCCG G node #60 CCGGGCGGGC G node #61 CCGGGCGGGC G node #62 GCGGGCGGGC G node #63 GCGGCCGGGC G node #64 GCGGCGGGGC G node #65 GCGGCGGGGC G node #66 GCGGCGGGGC G node #67 GCGGCGGGGC G node #68 GCGCCGGGGC C node #69 CCCCGCGGGC G node #70 CCCCCGGGGC G Overall accuracy of the 34 ancestral sequences: 0.92564 0.92564 0.93903 0.96221 0.96221 0.97558 0.92659 0.89023 0.96490 0.96490 0.96490 0.99854 0.99854 0.99966 0.99966 0.99966 0.99221 0.99808 0.99808 0.97517 0.98317 0.99119 0.99506 0.97690 0.97690 0.96189 0.97620 0.99989 0.99989 0.99989 0.99989 0.95631 0.94999 0.95031 for a site. 0.39024 0.39024 0.46884 0.63139 0.63139 0.73932 0.39368 0.22377 0.61720 0.61720 0.61720 0.98406 0.98406 0.99626 0.99627 0.99626 0.91570 0.97905 0.97905 0.74913 0.82403 0.90618 0.94621 0.75203 0.75203 0.63713 0.75137 0.99876 0.99876 0.99876 0.99876 0.54788 0.53582 0.54717 for the sequence. Counts of changes at sites 1 CG CG CG CG CG CG (6) 2 CG CG GC (3) 3 CG GC (2) 4 CG GC GC (3) 5 GC GC GC GC (4) 6 CG GC CG CG (4) 7 GC GC (2) 8 GC GC GC GC (4) 9 CG GC GC (3) 10 GC CG CG CG CG CG CG (7) 11 G? C? GC C? G? GC GC CG G? G? G? G? C? C? G? GC CG GC (18) altree-v1.3.1/test/paml/unrooted_present/association/0000755000175000017500000000000012252703410023133 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paml/unrooted_present/association/rub0000644000175000017500000003550112043315246023656 0ustar vdanjeanvdanjean TREE # 1 1 114.9094 191.446920 x: 0.80189 0.86355 1.00000 0.99305 0.89074 0.85919 0.70270 0.75174 0.74732 0.88922 0.84271 0.64707 0.57975 0.85413 0.86112 0.86851 0.77260 0.50918 0.42855 0.81496 0.71039 0.53319 0.76726 0.74305 0.74626 0.78847 0.82586 0.87508 0.51039 0.47093 0.87785 0.76907 0.53027 0.67918 1.00000 0.21839 0.24112 0.21870 0.24735 2 35.7482 180.282991 x: 0.60638 0.75031 0.91597 0.96161 0.91469 0.89863 0.78734 0.81227 0.84651 1.00000 0.98309 0.79766 0.70321 0.86828 0.92995 0.91683 0.74822 0.55330 0.44962 0.79545 0.71055 0.54220 0.73374 0.72619 0.74825 0.75977 0.79572 0.85004 0.56245 0.55610 0.89935 0.73261 0.48828 0.65383 1.00000 0.21839 0.24112 0.21870 0.24735 3 39.2096 178.600236 x: 0.55500 0.73939 0.91041 0.95773 0.93441 0.91006 0.78748 0.80006 0.84199 1.00000 1.00000 0.80649 0.71640 0.86085 0.94060 0.92616 0.74031 0.56059 0.45471 0.78710 0.70829 0.54275 0.72619 0.74652 0.77024 0.76556 0.79645 0.84572 0.58182 0.57891 0.90657 0.72393 0.47968 0.64540 1.00000 0.21839 0.24112 0.21870 0.24735 4 27.2762 174.769630 x: 0.42076 0.82026 0.94820 0.88667 0.99366 0.83049 0.80617 0.79557 0.86716 1.00000 1.00000 0.82582 0.78834 0.84595 1.00000 0.97842 0.70130 0.58890 0.48244 0.77342 0.70965 0.55395 0.69600 0.80490 0.83268 0.75295 0.77519 0.82405 0.64095 0.65367 0.93786 0.69273 0.46149 0.60485 1.00000 0.21839 0.24112 0.21870 0.24735 5 12.1266 174.514561 x: 0.41547 0.82949 0.94094 0.88163 1.00000 0.83355 0.80451 0.79395 0.86516 1.00000 1.00000 0.82666 0.79703 0.84356 1.00000 0.98686 0.69532 0.59082 0.48705 0.77445 0.71091 0.55602 0.69294 0.80542 0.83391 0.74780 0.77273 0.82394 0.64505 0.66005 0.94203 0.68995 0.46107 0.60029 1.00000 0.21839 0.24112 0.21870 0.24735 6 16.2354 174.212559 x: 0.41056 0.84010 0.93308 0.88836 1.00000 0.83485 0.80441 0.79469 0.86789 1.00000 1.00000 0.82655 0.80741 0.84140 1.00000 1.00000 0.68648 0.59233 0.49438 0.77292 0.71105 0.55773 0.68912 0.80901 0.83956 0.74903 0.77485 0.82371 0.65222 0.66976 0.94852 0.68631 0.45976 0.59471 1.00000 0.21839 0.24112 0.21870 0.24735 7 11.6723 173.108877 x: 0.31191 0.94409 0.84996 0.92905 1.00000 0.83020 0.87186 0.80407 0.87324 1.00000 1.00000 0.80127 0.82279 0.81341 1.00000 1.00000 0.60786 0.56252 0.56538 0.75462 0.70188 0.55931 0.67567 0.81739 0.86575 0.76618 0.78112 0.77786 0.66549 0.69793 1.00000 0.67450 0.46263 0.56482 1.00000 0.21839 0.24112 0.21870 0.24735 8 8.2869 172.274253 x: 0.31548 1.00000 0.80011 0.89267 1.00000 0.83067 0.92049 0.77063 0.85964 1.00000 1.00000 0.83363 0.82751 0.80298 1.00000 1.00000 0.54971 0.54329 0.62734 0.72647 0.68624 0.55278 0.66399 0.85017 0.91268 0.78895 0.77460 0.72294 0.68764 0.73296 1.00000 0.66016 0.45682 0.55097 1.00000 0.21839 0.24112 0.21870 0.24735 9 4.8989 170.929203 x: 0.28760 1.00000 0.88894 0.89522 1.00000 0.85571 0.86219 0.72371 0.87567 1.00000 1.00000 0.86968 0.85904 0.80581 1.00000 1.00000 0.41553 0.52518 0.80802 0.72409 0.68059 0.55594 0.63186 0.91528 1.00000 0.69126 0.67428 0.61595 0.73520 0.81452 1.00000 0.62084 0.44940 0.51044 1.00000 0.21839 0.24112 0.21870 0.24735 10 6.1884 169.898572 x: 0.30047 1.00000 0.93660 0.85048 1.00000 0.85529 0.86699 0.76591 0.88060 1.00000 1.00000 0.79718 0.90393 0.79099 1.00000 1.00000 0.36311 0.55457 0.92671 0.74225 0.69376 0.57098 0.60342 1.00000 1.00000 0.65733 0.67253 0.64853 0.81481 0.90522 1.00000 0.58852 0.43462 0.47220 1.00000 0.21839 0.24112 0.21870 0.24735 11 7.4526 169.337351 x: 0.29420 1.00000 0.92800 0.84165 1.00000 0.83537 0.84899 0.76359 0.87523 1.00000 1.00000 0.80750 0.93850 0.79905 1.00000 1.00000 0.35874 0.57699 1.00000 0.75031 0.70109 0.57921 0.58923 1.00000 1.00000 0.65818 0.69291 0.68629 0.86971 0.96302 1.00000 0.57080 0.41983 0.45360 1.00000 0.21839 0.24112 0.21870 0.24735 12 3.4687 168.953167 x: 0.29856 1.00000 0.92525 0.85865 1.00000 0.82307 0.86572 0.75408 0.85821 1.00000 1.00000 0.82287 0.96994 0.77752 1.00000 1.00000 0.40258 0.59040 1.00000 0.74568 0.70450 0.58554 0.58244 1.00000 1.00000 0.65143 0.68506 0.68591 0.90214 1.00000 1.00000 0.55808 0.39869 0.44353 1.00000 0.21839 0.24112 0.21870 0.24735 13 4.8257 168.655235 x: 0.29523 1.00000 0.91808 0.84893 1.00000 0.83921 0.86571 0.75124 0.87561 1.00000 1.00000 0.82276 1.00000 0.77364 1.00000 1.00000 0.43667 0.59682 1.00000 0.73688 0.70367 0.58803 0.57644 1.00000 1.00000 0.65583 0.68089 0.67684 0.93398 1.00000 1.00000 0.54596 0.37661 0.43786 1.00000 0.21839 0.24112 0.21870 0.24735 14 1.8651 168.338092 x: 0.28755 1.00000 0.92515 0.84660 1.00000 0.86138 0.87502 0.76792 0.85624 1.00000 1.00000 0.86001 1.00000 0.79545 1.00000 1.00000 0.38042 0.60299 1.00000 0.75329 0.71034 0.59621 0.55082 1.00000 1.00000 0.66700 0.69686 0.68400 1.00000 1.00000 1.00000 0.52294 0.35365 0.43907 1.00000 0.21839 0.24112 0.21870 0.24735 15 2.1555 168.206404 x: 0.30210 1.00000 0.88499 0.86507 1.00000 0.85985 0.86550 0.76001 0.87589 1.00000 1.00000 0.86887 1.00000 0.76141 1.00000 1.00000 0.30318 0.63521 1.00000 0.73840 0.71073 0.60845 0.50036 1.00000 1.00000 0.65589 0.69924 0.68488 1.00000 1.00000 1.00000 0.47074 0.31768 0.42829 1.00000 0.21839 0.24112 0.21870 0.24735 16 0.8376 168.156242 x: 0.29707 1.00000 0.88355 0.86823 1.00000 0.87634 0.88166 0.73867 0.86500 1.00000 1.00000 0.85134 1.00000 0.76899 1.00000 1.00000 0.31282 0.65089 1.00000 0.71513 0.70653 0.61406 0.47358 1.00000 1.00000 0.64885 0.70202 0.69384 1.00000 1.00000 1.00000 0.43999 0.30216 0.41522 1.00000 0.21839 0.24112 0.21870 0.24735 17 0.4736 168.101192 x: 0.29496 1.00000 0.88379 0.86444 1.00000 0.88515 0.88212 0.73181 0.87682 1.00000 1.00000 0.86581 1.00000 0.74459 1.00000 1.00000 0.36648 0.64090 1.00000 0.73184 0.71799 0.62813 0.45466 1.00000 1.00000 0.65238 0.71394 0.70404 1.00000 1.00000 1.00000 0.41193 0.31033 0.37805 1.00000 0.21839 0.24112 0.21870 0.24735 18 0.6440 168.067611 x: 0.29869 1.00000 0.86751 0.87064 1.00000 0.88266 0.88142 0.74566 0.87433 1.00000 1.00000 0.87396 1.00000 0.76860 1.00000 1.00000 0.39784 0.65740 1.00000 0.72553 0.71778 0.63223 0.44733 1.00000 1.00000 0.64400 0.70488 0.69827 1.00000 1.00000 1.00000 0.40071 0.30414 0.36957 1.00000 0.21839 0.24112 0.21870 0.24735 19 0.4734 168.049203 x: 0.29721 1.00000 0.86764 0.86898 1.00000 0.88770 0.87974 0.74377 0.87930 1.00000 1.00000 0.88356 1.00000 0.76310 1.00000 1.00000 0.41187 0.67070 1.00000 0.70854 0.71094 0.62614 0.45754 1.00000 1.00000 0.65738 0.70390 0.70190 1.00000 1.00000 1.00000 0.41765 0.29050 0.39692 1.00000 0.21839 0.24112 0.21870 0.24735 20 0.2052 168.045422 x: 0.29665 1.00000 0.86179 0.87066 1.00000 0.89046 0.88364 0.74001 0.88058 1.00000 1.00000 0.88239 1.00000 0.76481 1.00000 1.00000 0.41144 0.66651 1.00000 0.71845 0.71544 0.62490 0.46267 1.00000 1.00000 0.65981 0.70025 0.69942 1.00000 1.00000 1.00000 0.42160 0.28019 0.40304 1.00000 0.21839 0.24112 0.21870 0.24735 21 0.1018 168.043172 x: 0.29668 1.00000 0.85702 0.87211 1.00000 0.89224 0.88431 0.73964 0.88173 1.00000 1.00000 0.88362 1.00000 0.76763 1.00000 1.00000 0.40853 0.65798 1.00000 0.71357 0.71294 0.62226 0.46764 1.00000 1.00000 0.66323 0.70217 0.69779 1.00000 1.00000 1.00000 0.42547 0.28757 0.39628 1.00000 0.21839 0.24112 0.21870 0.24735 22 0.0611 168.042340 x: 0.29535 1.00000 0.85574 0.87177 1.00000 0.89270 0.88531 0.74230 0.88115 1.00000 1.00000 0.88387 1.00000 0.76547 1.00000 1.00000 0.40777 0.66241 1.00000 0.71459 0.71239 0.62252 0.46818 1.00000 1.00000 0.66413 0.70487 0.69470 1.00000 1.00000 1.00000 0.42524 0.29373 0.39764 1.00000 0.21839 0.24112 0.21870 0.24735 23 0.0438 168.041762 x: 0.29502 1.00000 0.85553 0.87208 1.00000 0.89088 0.88741 0.74021 0.88407 1.00000 1.00000 0.88324 1.00000 0.76695 1.00000 1.00000 0.40765 0.66235 1.00000 0.71442 0.71276 0.62390 0.46577 1.00000 1.00000 0.66600 0.70722 0.69506 1.00000 1.00000 1.00000 0.42349 0.29380 0.39884 1.00000 0.21839 0.24112 0.21870 0.24735 24 0.0548 168.041571 x: 0.29488 1.00000 0.85524 0.87186 1.00000 0.89041 0.88676 0.74261 0.88332 1.00000 1.00000 0.88332 1.00000 0.76618 1.00000 1.00000 0.40786 0.66074 1.00000 0.71335 0.71266 0.62382 0.46460 1.00000 1.00000 0.66717 0.70698 0.69541 1.00000 1.00000 1.00000 0.42261 0.29085 0.39841 1.00000 0.21839 0.24112 0.21870 0.24735 25 0.0157 168.041542 x: 0.29492 1.00000 0.85509 0.87200 1.00000 0.89029 0.88681 0.74265 0.88341 1.00000 1.00000 0.88314 1.00000 0.76606 1.00000 1.00000 0.40773 0.66160 1.00000 0.71355 0.71273 0.62324 0.46531 1.00000 1.00000 0.66756 0.70646 0.69615 1.00000 1.00000 1.00000 0.42336 0.29046 0.39714 1.00000 0.21839 0.24112 0.21870 0.24735 26 0.0042 168.041518 x: 0.29503 1.00000 0.85445 0.87239 1.00000 0.89033 0.88659 0.74293 0.88331 1.00000 1.00000 0.88293 1.00000 0.76599 1.00000 1.00000 0.40795 0.66161 1.00000 0.71353 0.71307 0.62378 0.46565 1.00000 1.00000 0.66706 0.70707 0.69690 1.00000 1.00000 1.00000 0.42303 0.29082 0.39765 1.00000 0.21839 0.24112 0.21870 0.24735 27 0.0053 168.041515 x: 0.29506 1.00000 0.85434 0.87249 1.00000 0.89033 0.88652 0.74294 0.88329 1.00000 1.00000 0.88291 1.00000 0.76599 1.00000 1.00000 0.40804 0.66165 1.00000 0.71376 0.71282 0.62346 0.46527 1.00000 1.00000 0.66712 0.70721 0.69679 1.00000 1.00000 1.00000 0.42301 0.29083 0.39768 1.00000 0.21839 0.24112 0.21870 0.24735 28 0.0013 168.041513 x: 0.29505 1.00000 0.85426 0.87264 1.00000 0.89032 0.88658 0.74292 0.88332 1.00000 1.00000 0.88303 1.00000 0.76589 1.00000 1.00000 0.40790 0.66163 1.00000 0.71371 0.71287 0.62349 0.46496 1.00000 1.00000 0.66695 0.70716 0.69691 1.00000 1.00000 1.00000 0.42313 0.29083 0.39764 1.00000 0.21839 0.24112 0.21870 0.24735 29 0.0028 168.041512 x: 0.29506 1.00000 0.85421 0.87274 1.00000 0.89031 0.88653 0.74290 0.88330 1.00000 1.00000 0.88307 1.00000 0.76587 1.00000 1.00000 0.40784 0.66170 1.00000 0.71368 0.71296 0.62365 0.46498 1.00000 1.00000 0.66709 0.70716 0.69675 1.00000 1.00000 1.00000 0.42301 0.29077 0.39756 1.00000 0.21839 0.24112 0.21870 0.24735 30 0.0015 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88654 0.74289 0.88331 1.00000 1.00000 0.88308 1.00000 0.76586 1.00000 1.00000 0.40781 0.66170 1.00000 0.71369 0.71289 0.62360 0.46507 1.00000 1.00000 0.66707 0.70716 0.69677 1.00000 1.00000 1.00000 0.42288 0.29075 0.39756 1.00000 0.21839 0.24112 0.21870 0.24735 31 0.0001 168.041512 x: 0.29505 1.00000 0.85420 0.87275 1.00000 0.89031 0.88653 0.74289 0.88332 1.00000 1.00000 0.88308 1.00000 0.76587 1.00000 1.00000 0.40778 0.66171 1.00000 0.71368 0.71293 0.62357 0.46506 1.00000 1.00000 0.66706 0.70716 0.69677 1.00000 1.00000 1.00000 0.42286 0.29074 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735 32 0.0003 168.041512 x: 0.29505 1.00000 0.85420 0.87274 1.00000 0.89032 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62360 0.46505 1.00000 1.00000 0.66706 0.70715 0.69677 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735 33 0.0000 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46505 1.00000 1.00000 0.66706 0.70715 0.69677 1.00000 1.00000 1.00000 0.42287 0.29074 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735 34 0.0000 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46506 1.00000 1.00000 0.66706 0.70715 0.69676 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735 35 0.0000 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46506 1.00000 1.00000 0.66706 0.70715 0.69676 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735 36 0.0000 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46506 1.00000 1.00000 0.66706 0.70715 0.69676 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735 altree-v1.3.1/test/paml/unrooted_present/association/run_altree0000755000175000017500000000104712045215411025222 0ustar vdanjeanvdanjean#!/bin/sh -x # To obtain the apomorphy list corresponding to the tree whose topology # has been reconstructed by phyML # paml uses the baseml.ctl file as the parameter file baseml # To perform the association test # The outgroup must be sepcified for the association analysis (the tree # must be rooted). The outgroup is kept for the association test) RA=../../../.. env PERL5LIB=$RA/blib/lib:$RA/blib/arch:$RA \ $RA/progs/altree -i rst -j nb_cas_control.txt -a -t SNP \ --outgroup OUTG -p paml -r 10 -o 1_trio_ML.asso --data-qual qualitative altree-v1.3.1/test/paml/unrooted_present/association/baseml.ctl0000644000175000017500000000322312043315246025106 0ustar vdanjeanvdanjean seqfile = trio2.phy treefile = trio2.phy_phyml_tree.txt outfile = mlb * main result file noisy = 9 * 0,1,2,3: how much rubbish on the screen verbose = 1 * 1: detailed output, 0: concise output runmode = 0 * 0: user tree; 1: semi-automatic; 2: automatic * 3: StepwiseAddition; (4,5):PerturbationNNI model = 7 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85 * 5:T92, 6:TN93, 7:REV, 8:UNREST, 9:REVu; 10:UNRESTu Mgene = 0 * 0:rates, 1:separate; 2:diff pi, 3:diff kapa, 4:all diff * ndata = 1 clock = 1 * 0:no clock, 1:clock; 2:local clock; 3:CombinedAnalysis fix_kappa = 0 * 0: estimate kappa; 1: fix kappa at value below kappa = 5 * initial or fixed kappa fix_alpha = 1 * 0: estimate alpha; 1: fix alpha at value below alpha = 0 * initial or fixed alpha, 0:infinity (constant rate) Malpha = 0 * 1: different alpha's for genes, 0: one alpha ncatG = 5 * # of categories in the dG, AdG, or nparK models of rates nparK = 0 * rate-class models. 1:rK, 2:rK&fK, 3:rK&MK(1/K), 4:rK&MK nhomo = 0 * 0 & 1: homogeneous, 2: kappa for branches, 3: N1, 4: N2 getSE = 0 * 0: don't want them, 1: want S.E.s of estimates RateAncestor = 1 * (0,1,2): rates (alpha>0) or ancestral states Small_Diff = 7e-6 cleandata = 0 * remove sites with ambiguity data (1:yes, 0:no)? * icode = 0 * (with RateAncestor=1. try "GC" in data,model=4,Mgene=4) * fix_blength = -1 * 0: ignore, -1: random, 1: initial, 2: fixed method = 0 * 0: simultaneous; 1: one branch at a time altree-v1.3.1/test/paml/unrooted_present/association/1_trio_ML.asso0000644000175000017500000001306212045215411025610 0ustar vdanjeanvdanjean /----* H006 case/control:23/19 | Site: 2 Sens: C-->G | /----* H031 case/control:1/0 | | Site: 8 Sens: G-->C | |----* H005 case/control:2/2 | | Site: 10 Sens: C-->G | | /----* H032 case/control:0/1 | | | Site: 7 Sens: G-->C | |----* 68 case/control:2/3 | | | Site: 4 Sens: G-->C | | \----* H016 case/control:2/2 | /----* 64+(65+(66+(67))) case/control:34/24 | | | Site: 6 Sens: C-->G | | |----* H008 case/control:28/19 | | \----* H024 case/control:1/0 | | Site: 9 Sens: G-->C | /----* 63 case/control:45/26 | | | Site: 5 Sens: G-->C | | \----* H004 case/control:11/2 |----* 62 case/control:47/29 | | Site: 1 Sens: C-->G | \----* H025 case/control:2/3 |----* OUTG case/control:4/4 | Site: 11 Sens: G-->C -----* 60+(61)+(42) case/control:204/204 | | [0] ddl=4 chi2=6.69 p_value_chi2=0.158 | [1] ddl=8 chi2=11.30 p_value_chi2=0.173 | [2] ddl=12 chi2=24.02 p_value_chi2=0.012 | [3] ddl=21 chi2=39.11 p_value_chi2=0.002 | [4] ddl=25 chi2=54.71 p_value_chi2=0 | [5] ddl=29 chi2=63.21 p_value_chi2=0 | [6] ddl=33 chi2=65.94 p_value_chi2=0 | [7] ddl=34 chi2=67.18 p_value_chi2=0 | [8] ddl=35 chi2=68.34 p_value_chi2=0 | /----* H010 case/control:1/3 | /----* 53 case/control:1/4 | | | Site: 10 Sens: C-->G | | \----* H033 case/control:0/1 | | Site: 1 Sens: C-->G | | /----* H027 case/control:1/2 | | | Site: 6 Sens: C-->G | | | Site: 10 Sens: C-->G | | |----* H017 case/control:0/8 | |----* 54+(55) case/control:3/13 | | | Site: 3 Sens: G-->C | | \----* H014 case/control:2/3 | | Site: 1 Sens: C-->G | /----* 50+(51+(52)) case/control:9/25 | | | Site: 4 Sens: G-->C | | |----* H011 case/control:3/8 | | \----* H003 case/control:2/0 | | Site: 5 Sens: G-->C | |----* H018 case/control:2/2 | /----* 48+(49) case/control:40/39 | | | Site: 2 Sens: G-->C | | | /----* H022 case/control:9/1 | | | /----* 58 case/control:27/9 | | | | | Site: 5 Sens: G-->C | | | | | /----* H013 case/control:15/5 | | | | \----* 59 case/control:18/8 | | | | | Site: 6 Sens: C-->G | | | | \----* H019 case/control:3/3 | | | | Site: 10 Sens: G-->C | | | /----* 57 case/control:28/9 | | | | | Site: 10 Sens: C-->G | | | | \----* H034 case/control:1/0 | | \----* 56 case/control:29/12 | | | Site: 1 Sens: C-->G | | \----* H029 case/control:1/3 | |----* H020 case/control:5/9 | | Site: 10 Sens: C-->G | /----* 45+(46+(47)) case/control:71/93 | | | Site: 8 Sens: G-->C | | |----* H001 case/control:24/39 | | \----* H015 case/control:2/6 | | Site: 9 Sens: C-->G | /----* 44 case/control:75/93 | | | Site: 7 Sens: G-->C | | | Site: 2 Sens: C-->G | | \----* H028 case/control:4/0 |----* 43 case/control:76/94 | | Site: 9 Sens: G-->C | \----* H030 case/control:1/1 | /----* H035 case/control:1/0 | | Site: 10 Sens: C-->G | |----* H007 case/control:25/36 \----* 41+(40) case/control:54/58 | Site: 4 Sens: G-->C | /----* H026 case/control:1/0 | | Site: 1 Sens: C-->G | |----* H023 case/control:1/5 \----* 39+(69) case/control:28/22 | Site: 3 Sens: G-->C | /----* H012 case/control:1/2 | | /----* H021 case/control:11/2 | | | Site: 8 Sens: G-->C | | | Site: 1 Sens: C-->G | |----* 70 case/control:20/5 | | | Site: 5 Sens: G-->C | | \----* H002 case/control:9/3 \----* 38+(37) case/control:26/17 | Site: 6 Sens: C-->G \----* H009 case/control:5/10 Site: 8 Sens: G-->C Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 altree-v1.3.1/test/paml/unrooted_present/association/mlb0000644000175000017500000005133612043315246023644 0ustar vdanjeanvdanjean seed used = 30455833 H019 GCGGCGCCCC G H026 GCCCGCGGGC G H004 GCGGCCGGGC G H020 CGGGGCCCCG G H034 GCGGGCCCCG G H027 CCCCGGCCCG G H023 CCCCGCGGGC G H016 GCGCCGGGGC G H002 CCCCCGGGGC G H015 CGGGGCCCGC G H006 CGGGGCGGGC G H001 CGGGGCCCCC G H010 CCGCGCCCCG G H028 CGGGGCCGCC G H024 GCGGCGGGCC G H017 CCCCGCCCCC G H009 CCCCGGGCGC G H007 CCGCGCGGGC G H033 GCGCGCCCCG G H008 GCGGCGGGGC G H029 GCGGGCCCCC G H003 CCGCCCCCCC G H035 CCGCGCGGGG G H013 GCGGCGCCCG G H032 GCGCCGCGGC G H025 GCGGGCGGGC G H021 GCCCCGGCGC G H030 CCGGGCGGCC G H031 GCGGCGGCGC G H012 CCCCGGGGGC G H005 GCGGCGGGGG G H011 CCGCGCCCCC G H022 GCGGCCCCCG G H014 GCCCGCCCCC G H018 CCGGGCCCCC G OUTG CCGGGCGGGC C BASEML (in paml 3.14, January 2004) trio2.phy REV Global clock ns = 36 ls = 11 # site patterns = 11 1 1 1 1 1 1 1 1 1 1 1 H019 GCGGCGCCCC G H026 ..CCGCGGG. . H004 .....CGGG. . H020 CG..GC...G . H034 ....GC...G . H027 C.CCG....G . H023 C.CCGCGGG. . H016 ...C..GGG. . H002 C.CC..GGG. . H015 CG..GC..G. . H006 CG..GCGGG. . H001 CG..GC.... . H010 C..CGC...G . H028 CG..GC.G.. . H024 ......GG.. . H017 C.CCGC.... . H009 C.CCG.G.G. . H007 C..CGCGGG. . H033 ...CGC...G . H008 ......GGG. . H029 ....GC.... . H003 C..C.C.... . H035 C..CGCGGGG . H013 .........G . H032 ...C...GG. . H025 ....GCGGG. . H021 ..CC..G.G. . H030 C...GCGG.. . H031 ......G.G. . H012 C.CCG.GGG. . H005 ......GGGG . H011 C..CGC.... . H022 .....C...G . H014 ..CCGC.... . H018 C...GC.... . OUTG C...GCGGG. C Frequencies.. T C A G H019 0.0000 0.5455 0.0000 0.4545 H026 0.0000 0.4545 0.0000 0.5455 H004 0.0000 0.3636 0.0000 0.6364 H020 0.0000 0.4545 0.0000 0.5455 H034 0.0000 0.4545 0.0000 0.5455 H027 0.0000 0.6364 0.0000 0.3636 H023 0.0000 0.5455 0.0000 0.4545 H016 0.0000 0.3636 0.0000 0.6364 H002 0.0000 0.5455 0.0000 0.4545 H015 0.0000 0.4545 0.0000 0.5455 H006 0.0000 0.2727 0.0000 0.7273 H001 0.0000 0.5455 0.0000 0.4545 H010 0.0000 0.6364 0.0000 0.3636 H028 0.0000 0.4545 0.0000 0.5455 H024 0.0000 0.3636 0.0000 0.6364 H017 0.0000 0.8182 0.0000 0.1818 H009 0.0000 0.5455 0.0000 0.4545 H007 0.0000 0.4545 0.0000 0.5455 H033 0.0000 0.5455 0.0000 0.4545 H008 0.0000 0.2727 0.0000 0.7273 H029 0.0000 0.5455 0.0000 0.4545 H003 0.0000 0.8182 0.0000 0.1818 H035 0.0000 0.3636 0.0000 0.6364 H013 0.0000 0.4545 0.0000 0.5455 H032 0.0000 0.4545 0.0000 0.5455 H025 0.0000 0.2727 0.0000 0.7273 H021 0.0000 0.5455 0.0000 0.4545 H030 0.0000 0.4545 0.0000 0.5455 H031 0.0000 0.3636 0.0000 0.6364 H012 0.0000 0.4545 0.0000 0.5455 H005 0.0000 0.1818 0.0000 0.8182 H011 0.0000 0.7273 0.0000 0.2727 H022 0.0000 0.5455 0.0000 0.4545 H014 0.0000 0.7273 0.0000 0.2727 H018 0.0000 0.6364 0.0000 0.3636 OUTG 0.0000 0.4545 0.0000 0.5455 Average 0.0000 0.4924 0.0000 0.5076 # constant sites: 0 (0.00%) ln Lmax (unconstrained) = -26.376848 Distances: TN93 (kappa) (alpha set at 0.00) This matrix is not used in later m.l. analysis. H019 H026 9.0000( 0.0000) H004 nan(999.0000) nan(999.0000) H020 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H034 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H027 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H023 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H016 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H002 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H015 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H006 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H001 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H010 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H028 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H024 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H017 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H009 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H007 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H033 nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H008 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H029 nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H003 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H035 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H013 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H032 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H025 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H021 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H030 nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H031 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H012 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H005 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H011 nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H022 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H014 nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H018 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) OUTG 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) TREE # 1: (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); MP score: 39.00 lnL(ntime: 34 np: 39): -168.041512 +0.000000 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 0.29506 0.29506 0.25204 0.21996 0.21996 0.19584 0.17361 0.12898 0.11393 0.11393 0.11393 0.10061 0.10061 0.07705 0.07705 0.07705 0.03142 0.05099 0.05099 0.07180 0.05119 0.03192 0.01484 0.19584 0.19584 0.13063 0.09238 0.06437 0.06437 0.06437 0.06437 0.02722 0.07328 0.11731 1.00000 0.21839 0.24112 0.21870 0.24735 tree length = 4.53786 (((((((((((((((((H010, H033), (H027, (H017, H014))), H011), H003), H018), (((H022, (H013, H019)), H034), H029)), H020), H001), H015), H028), H030), ((H006, ((((((H031, H005), (H032, H016)), H008), H024), H004), H025)), OUTG)), H035), H007), (H026, H023)), H012), (H021, H002), H009); (((((((((((((((((H010: 0.031418, H033: 0.031418): 0.045635, (H027: 0.050987, (H017: 0.050987, H014: 0.050987): 0.000000): 0.026065): 0.000000, H011: 0.077052): 0.000000, H003: 0.077053): 0.023554, H018: 0.100607): 0.000000, (((H022: 0.031920, (H013: 0.014845, H019: 0.014845): 0.017075): 0.019267, H034: 0.051187): 0.020614, H029: 0.071801): 0.028806): 0.013321, H020: 0.113928): 0.000000, H001: 0.113928): 0.000000, H015: 0.113928): 0.015048, H028: 0.128977): 0.044636, H030: 0.173613): 0.022224, ((H006: 0.195836, ((((((H031: 0.064366, H005: 0.064366): 0.000000, (H032: 0.027219, H016: 0.027219): 0.037147): 0.000000, H008: 0.064366): 0.000000, H024: 0.064366): 0.028012, H004: 0.092378): 0.038256, H025: 0.130634): 0.065201): 0.000000, OUTG: 0.195836): 0.000000): 0.024127, H035: 0.219963): 0.000000, H007: 0.219963): 0.032073, (H026: 0.073275, H023: 0.073275): 0.178761): 0.043019, H012: 0.295055): 0.000000, (H021: 0.117306, H002: 0.117306): 0.177750, H009: 0.295056); Detailed output identifying parameters Parameters in the rate matrix (REV) (Yang 1994 J Mol Evol 39:105-111): Rate parameters: 1.00000 0.21839 0.24112 0.21870 0.24735 Base frequencies: 0.00000 0.49242 0.00000 0.50758 Rate matrix Q, Average Ts/Tv = 0.0000 -4.972327 3.982525 0.000000 0.989801 0.000000 -1.015385 0.000000 1.015385 0.000000 0.870993 -4.976058 4.105065 0.000000 0.985075 0.000000 -0.985075 altree-v1.3.1/test/paml/unrooted_present/association/lnf0000644000175000017500000000164012043315246023642 0ustar vdanjeanvdanjean -1 11 11 1 1 1 -21.8448847646 0.0000 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC 2 1 -13.6418393080 0.0000 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC 3 1 -11.6756376430 0.0001 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG 4 1 -15.6068374149 0.0000 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG 5 1 -15.9985356580 0.0000 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG 6 1 -18.0565869859 0.0000 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC 7 1 -11.4529895174 0.0001 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG 8 1 -14.7076669554 0.0000 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG 9 1 -13.3076620282 0.0000 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG 10 1 -25.2617214477 0.0000 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC 11 1 -6.4871501505 0.0168 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCaltree-v1.3.1/test/paml/unrooted_present/association/trio2.phy0000644000175000017500000000143612043315246024724 0ustar vdanjeanvdanjean 36 10 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC altree-v1.3.1/test/paml/unrooted_present/association/rst10000644000175000017500000000000112043315246023742 0ustar vdanjeanvdanjean altree-v1.3.1/test/paml/unrooted_present/association/nb_cas_control.txt0000644000175000017500000000104212043315246026662 0ustar vdanjeanvdanjeanH019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 OUTG m004 c004 altree-v1.3.1/test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt0000644000175000017500000000154612043315246027774 0ustar vdanjeanvdanjean(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896); altree-v1.3.1/test/paml/unrooted_present/association/2base.t0000644000175000017500000001314312043315246024322 0ustar vdanjeanvdanjean 36 H019 H026 9.0000 H004 nan nan H020 nan 9.0000 9.0000 H034 nan 9.0000 nan nan H027 nan 9.0000 9.0000 nan nan H023 9.0000 nan nan 9.0000 9.0000 nan H016 nan nan nan 9.0000 9.0000 9.0000 nan H002 9.0000 nan nan 9.0000 9.0000 nan nan nan H015 nan 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 H006 9.0000 nan nan nan 9.0000 9.0000 nan 9.0000 nan nan H001 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan H010 nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan H028 nan 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan nan H024 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan H017 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 H009 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan 9.0000 9.0000 nan H007 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan nan nan nan nan nan H033 nan nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan 9.0000 nan H008 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 H029 nan nan nan nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan nan 9.0000 nan nan nan H003 nan 9.0000 nan nan nan nan 9.0000 nan 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 nan nan 9.0000 nan H035 9.0000 nan nan nan nan nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan nan nan 9.0000 9.0000 nan H013 nan 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 H032 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan nan nan nan H025 nan nan nan 9.0000 nan 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan H021 nan nan nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan H030 nan nan nan nan nan 9.0000 nan nan nan nan nan nan nan nan nan nan nan nan nan nan nan nan nan 9.0000 9.0000 nan 9.0000 H031 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan nan nan 9.0000 nan nan nan nan nan H012 9.0000 nan nan 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan nan H005 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 H011 nan nan 9.0000 nan nan nan nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan nan nan nan nan 9.0000 nan 9.0000 nan 9.0000 H022 nan 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan nan nan 9.0000 nan nan 9.0000 nan nan H014 nan nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan nan H018 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan nan nan nan nan nan nan nan nan nan 9.0000 nan nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan nan nan OUTG 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan altree-v1.3.1/test/paml/unrooted_present/association/rst0000644000175000017500000003201212043315246023670 0ustar vdanjeanvdanjeanSupplemental results for BASEML seqf: trio2.phy treef: trio2.phy_phyml_tree.txt TREE # 1 Ancestral reconstruction by BASEML. (((((((((((((((((H010: 0.031418, H033: 0.031418): 0.045635, (H027: 0.050987, (H017: 0.050987, H014: 0.050987): 0.000000): 0.026065): 0.000000, H011: 0.077052): 0.000000, H003: 0.077053): 0.023554, H018: 0.100607): 0.000000, (((H022: 0.031920, (H013: 0.014845, H019: 0.014845): 0.017075): 0.019267, H034: 0.051187): 0.020614, H029: 0.071801): 0.028806): 0.013321, H020: 0.113928): 0.000000, H001: 0.113928): 0.000000, H015: 0.113928): 0.015048, H028: 0.128977): 0.044636, H030: 0.173613): 0.022224, ((H006: 0.195836, ((((((H031: 0.064366, H005: 0.064366): 0.000000, (H032: 0.027219, H016: 0.027219): 0.037147): 0.000000, H008: 0.064366): 0.000000, H024: 0.064366): 0.028012, H004: 0.092378): 0.038256, H025: 0.130634): 0.065201): 0.000000, OUTG: 0.195836): 0.000000): 0.024127, H035: 0.219963): 0.000000, H007: 0.219963): 0.032073, (H026: 0.073275, H023: 0.073275): 0.178761): 0.043019, H012: 0.295055): 0.000000, (H021: 0.117306, H002: 0.117306): 0.177750, H009: 0.295056); (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 tree with node labels for Rod Page's TreeView (((((((((((((((((13_H010: 0.031418, 19_H033: 0.031418) 53 : 0.045635, (6_H027: 0.050987, (16_H017: 0.050987, 34_H014: 0.050987) 55 : 0.000000) 54 : 0.026065) 52 : 0.000000, 32_H011: 0.077052) 51 : 0.000000, 22_H003: 0.077053) 50 : 0.023554, 35_H018: 0.100607) 49 : 0.000000, (((33_H022: 0.031920, (24_H013: 0.014845, 1_H019: 0.014845) 59 : 0.017075) 58 : 0.019267, 5_H034: 0.051187) 57 : 0.020614, 21_H029: 0.071801) 56 : 0.028806) 48 : 0.013321, 4_H020: 0.113928) 47 : 0.000000, 12_H001: 0.113928) 46 : 0.000000, 10_H015: 0.113928) 45 : 0.015048, 14_H028: 0.128977) 44 : 0.044636, 28_H030: 0.173613) 43 : 0.022224, ((11_H006: 0.195836, ((((((29_H031: 0.064366, 31_H005: 0.064366) 67 : 0.000000, (25_H032: 0.027219, 8_H016: 0.027219) 68 : 0.037147) 66 : 0.000000, 20_H008: 0.064366) 65 : 0.000000, 15_H024: 0.064366) 64 : 0.028012, 3_H004: 0.092378) 63 : 0.038256, 26_H025: 0.130634) 62 : 0.065201) 61 : 0.000000, 36_OUTG: 0.195836) 60 : 0.000000) 42 : 0.024127, 23_H035: 0.219963) 41 : 0.000000, 18_H007: 0.219963) 40 : 0.032073, (2_H026: 0.073275, 7_H023: 0.073275) 69 : 0.178761) 39 : 0.043019, 30_H012: 0.295055) 38 : 0.000000, (27_H021: 0.117306, 9_H002: 0.117306) 70 : 0.177750, 17_H009: 0.295056) 37 ; Nodes 37 to 70 are ancestral (1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650). Prob of best character at each node, listed by site Site Freq Data: 1 1 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC: C(0.994) C(0.994) C(0.996) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(0.957) C(0.999) C(0.999) G(0.948) G(0.998) G(1.000) G(1.000) C(1.000) C(1.000) G(0.924) G(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.848) C(0.847) 2 1 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC: C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(0.995) C(0.938) G(0.745) G(0.774) G(0.774) G(0.774) C(0.996) C(0.996) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.995) C(0.995) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.998) 3 1 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG: C(0.937) C(0.937) C(0.760) G(0.973) G(0.973) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.995) C(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.992) C(0.993) 4 1 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG: C(0.994) C(0.994) C(0.981) C(0.926) C(0.926) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(0.998) G(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.997) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.981) C(0.999) C(0.997) 5 1 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG: G(0.979) G(0.979) G(0.997) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.995) G(0.944) C(0.974) C(1.000) G(1.000) G(1.000) G(0.826) C(0.948) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.999) C(0.930) 6 1 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC: G(0.755) G(0.755) C(0.908) C(0.997) C(0.997) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(1.000) C(0.998) C(0.964) G(0.988) C(1.000) C(1.000) C(0.976) C(0.869) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.996) G(0.980) 7 1 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG: G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(0.923) C(0.962) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.964) G(0.999) G(0.998) 8 1 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG: G(0.952) G(0.952) G(0.994) G(1.000) G(1.000) G(1.000) G(0.976) G(0.705) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.816) 9 1 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG: G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(0.998) C(0.737) C(0.988) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.998) G(0.998) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.998) 10 1 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC: C(0.999) C(0.999) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.979) C(0.999) C(0.999) C(0.920) G(0.894) G(0.932) G(0.918) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.998) 11 1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC: G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.998) Summary of changes along branches. Check root for directions of change. Branch 1: 37..38 Branch 2: 38..39 6 G 0.755 -> C 0.908 Branch 3: 39..40 3 C 0.760 -> G 0.973 Branch 4: 40..41 Branch 5: 41..42 4 C 0.926 -> G 0.997 Branch 6: 42..43 9 G 0.998 -> C 0.737 Branch 7: 43..44 2 C 0.938 -> G 0.745 7 G 0.923 -> C 0.962 Branch 8: 44..45 8 G 0.705 -> C 0.999 Branch 9: 45..46 Branch 10: 46..47 Branch 11: 47..48 2 G 0.774 -> C 0.996 Branch 12: 48..49 Branch 13: 49..50 4 G 0.998 -> C 1.000 Branch 14: 50..51 Branch 15: 51..52 Branch 16: 52..53 10 C 1.000 -> G 0.979 Branch 17: 53..13 (H010) Branch 18: 53..19 (H033) 1 C 0.957 -> G Branch 19: 52..54 3 G 1.000 -> C 0.995 Branch 20: 54..6 (H027) 6 C 0.999 -> G 10 C 0.999 -> G Branch 21: 54..55 Branch 22: 55..16 (H017) Branch 23: 55..34 (H014) 1 C 0.999 -> G Branch 24: 51..32 (H011) Branch 25: 50..22 (H003) 5 G 1.000 -> C Branch 26: 49..35 (H018) Branch 27: 48..56 1 C 0.999 -> G 0.948 Branch 28: 56..57 10 C 0.920 -> G 0.894 Branch 29: 57..58 5 G 0.944 -> C 0.974 Branch 30: 58..33 (H022) Branch 31: 58..59 6 C 0.964 -> G 0.988 Branch 32: 59..24 (H013) Branch 33: 59..1 (H019) 10 G 0.918 -> C Branch 34: 57..5 (H034) Branch 35: 56..21 (H029) Branch 36: 47..4 (H020) 10 C 1.000 -> G Branch 37: 46..12 (H001) Branch 38: 45..10 (H015) 9 C 0.999 -> G Branch 39: 44..14 (H028) Branch 40: 43..28 (H030) Branch 41: 42..60 Branch 42: 60..61 Branch 43: 61..11 (H006) 2 C 0.995 -> G Branch 44: 61..62 1 C 1.000 -> G 0.924 Branch 45: 62..63 5 G 0.826 -> C 0.948 Branch 46: 63..64 6 C 0.869 -> G 1.000 Branch 47: 64..65 Branch 48: 65..66 Branch 49: 66..67 Branch 50: 67..29 (H031) 8 G 1.000 -> C Branch 51: 67..31 (H005) 10 C 1.000 -> G Branch 52: 66..68 4 G 1.000 -> C 0.981 Branch 53: 68..25 (H032) 7 G 0.964 -> C Branch 54: 68..8 (H016) Branch 55: 65..20 (H008) Branch 56: 64..15 (H024) 9 G 1.000 -> C Branch 57: 63..3 (H004) Branch 58: 62..26 (H025) Branch 59: 60..36 (OUTG) 11 G 1.000 -> C Branch 60: 41..23 (H035) 10 C 0.999 -> G Branch 61: 40..18 (H007) Branch 62: 39..69 Branch 63: 69..2 (H026) 1 C 0.848 -> G Branch 64: 69..7 (H023) Branch 65: 38..30 (H012) Branch 66: 37..70 5 G 0.979 -> C 0.930 Branch 67: 70..27 (H021) 1 C 0.847 -> G 8 G 0.816 -> C Branch 68: 70..9 (H002) Branch 69: 37..17 (H009) 8 G 0.952 -> C List of extant and reconstructed sequences H019 GCGGCGCCCC G H026 GCCCGCGGGC G H004 GCGGCCGGGC G H020 CGGGGCCCCG G H034 GCGGGCCCCG G H027 CCCCGGCCCG G H023 CCCCGCGGGC G H016 GCGCCGGGGC G H002 CCCCCGGGGC G H015 CGGGGCCCGC G H006 CGGGGCGGGC G H001 CGGGGCCCCC G H010 CCGCGCCCCG G H028 CGGGGCCGCC G H024 GCGGCGGGCC G H017 CCCCGCCCCC G H009 CCCCGGGCGC G H007 CCGCGCGGGC G H033 GCGCGCCCCG G H008 GCGGCGGGGC G H029 GCGGGCCCCC G H003 CCGCCCCCCC G H035 CCGCGCGGGG G H013 GCGGCGCCCG G H032 GCGCCGCGGC G H025 GCGGGCGGGC G H021 GCCCCGGCGC G H030 CCGGGCGGCC G H031 GCGGCGGCGC G H012 CCCCGGGGGC G H005 GCGGCGGGGG G H011 CCGCGCCCCC G H022 GCGGCCCCCG G H014 GCCCGCCCCC G H018 CCGGGCCCCC G OUTG CCGGGCGGGC C node #37 CCCCGGGGGC G node #38 CCCCGGGGGC G node #39 CCCCGCGGGC G node #40 CCGCGCGGGC G node #41 CCGCGCGGGC G node #42 CCGGGCGGGC G node #43 CCGGGCGGCC G node #44 CGGGGCCGCC G node #45 CGGGGCCCCC G node #46 CGGGGCCCCC G node #47 CGGGGCCCCC G node #48 CCGGGCCCCC G node #49 CCGGGCCCCC G node #50 CCGCGCCCCC G node #51 CCGCGCCCCC G node #52 CCGCGCCCCC G node #53 CCGCGCCCCG G node #54 CCCCGCCCCC G node #55 CCCCGCCCCC G node #56 GCGGGCCCCC G node #57 GCGGGCCCCG G node #58 GCGGCCCCCG G node #59 GCGGCGCCCG G node #60 CCGGGCGGGC G node #61 CCGGGCGGGC G node #62 GCGGGCGGGC G node #63 GCGGCCGGGC G node #64 GCGGCGGGGC G node #65 GCGGCGGGGC G node #66 GCGGCGGGGC G node #67 GCGGCGGGGC G node #68 GCGCCGGGGC G node #69 CCCCGCGGGC G node #70 CCCCCGGGGC G Overall accuracy of the 34 ancestral sequences: 0.96430 0.96430 0.96673 0.99030 0.99030 0.99897 0.96110 0.94544 0.97923 0.97923 0.97923 0.99936 0.99936 0.99992 0.99992 0.99992 0.99410 0.99918 0.99918 0.98743 0.98479 0.98822 0.99134 0.99897 0.99897 0.97480 0.98281 1.00000 1.00000 1.00000 1.00000 0.99492 0.98441 0.95925 for a site. 0.64910 0.64910 0.66689 0.89584 0.89584 0.98872 0.62168 0.49918 0.77199 0.77199 0.77199 0.99302 0.99302 0.99913 0.99913 0.99913 0.93600 0.99103 0.99103 0.86669 0.83945 0.87553 0.90582 0.98872 0.98872 0.74263 0.81876 0.99995 0.99995 0.99995 0.99995 0.94489 0.83161 0.61662 for the sequence. Counts of changes at sites 1 CG CG CG CG CG CG (6) 2 CG CG GC (3) 3 CG GC (2) 4 CG GC GC (3) 5 GC GC GC GC (4) 6 CG GC CG CG (4) 7 GC GC (2) 8 GC GC GC GC (4) 9 CG GC GC (3) 10 GC CG CG CG CG CG CG (7) 11 GC (1) altree-v1.3.1/test/paml/unrooted_absent/0000755000175000017500000000000012252703410020413 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paml/unrooted_absent/association/0000755000175000017500000000000012252703410022727 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/paml/unrooted_absent/association/rub0000644000175000017500000003552512043315246023460 0ustar vdanjeanvdanjean TREE # 1 1 114.2217 182.744808 x: 0.81953 0.86726 1.00000 0.98855 0.88247 0.84891 0.70415 0.75247 0.74771 0.88939 0.84284 0.64718 0.57978 0.85414 0.86111 0.86635 0.77397 0.50917 0.42804 0.81501 0.71042 0.53319 0.76728 0.73392 0.74699 0.78910 0.82591 0.87496 0.51062 0.47103 0.87787 0.76916 0.53210 0.68156 1.00000 0.21839 0.24112 0.21870 0.24735 2 33.3781 173.193043 x: 0.66645 0.76411 0.92536 0.95393 0.88891 0.86784 0.78325 0.81607 0.84675 1.00000 0.98183 0.79325 0.70171 0.87017 0.92921 0.91115 0.75191 0.55298 0.44804 0.79695 0.71136 0.54174 0.73542 0.70215 0.74897 0.76242 0.79645 0.85402 0.56155 0.55457 0.89908 0.73472 0.49428 0.66111 1.00000 0.21839 0.24112 0.21870 0.24735 3 31.4100 171.781061 x: 0.62417 0.74965 0.91675 0.95149 0.90625 0.88001 0.78246 0.80286 0.84118 1.00000 1.00000 0.80201 0.71661 0.86325 0.94088 0.92065 0.74370 0.56121 0.45343 0.78782 0.70888 0.54213 0.72767 0.71813 0.77166 0.76839 0.79675 0.84956 0.58196 0.57880 0.90681 0.72558 0.48462 0.65359 1.00000 0.21839 0.24112 0.21870 0.24735 4 17.6196 168.911436 x: 0.51067 0.81574 0.94821 0.90043 0.96369 0.82082 0.79862 0.80055 0.86659 1.00000 1.00000 0.79029 0.78033 0.84485 1.00000 0.97225 0.69896 0.58526 0.48375 0.78013 0.71246 0.55541 0.69888 0.75767 0.82635 0.74263 0.76582 0.82443 0.63155 0.64228 0.93986 0.69836 0.46232 0.61078 1.00000 0.21839 0.24112 0.21870 0.24735 5 23.3706 167.934844 x: 0.46216 0.86110 0.93986 0.86826 0.98931 0.82164 0.80459 0.79420 0.85851 1.00000 1.00000 0.80621 0.80257 0.83859 1.00000 1.00000 0.67621 0.58703 0.50051 0.78624 0.71715 0.56273 0.69048 0.76097 0.83554 0.73319 0.76798 0.83004 0.64283 0.65618 0.95449 0.69272 0.45892 0.58833 1.00000 0.21839 0.24112 0.21870 0.24735 6 14.7695 167.479522 x: 0.45580 0.88314 0.91969 0.86302 1.00000 0.82049 0.79826 0.79378 0.86299 1.00000 1.00000 0.81195 0.82104 0.83901 1.00000 1.00000 0.66109 0.59098 0.51385 0.78202 0.71682 0.56516 0.68461 0.76386 0.84417 0.73400 0.77019 0.83008 0.65352 0.67100 0.96526 0.68736 0.45689 0.57584 1.00000 0.21839 0.24112 0.21870 0.24735 7 14.1126 166.380253 x: 0.40133 0.94902 0.85973 0.90176 1.00000 0.83703 0.81750 0.80356 0.85734 1.00000 1.00000 0.79473 0.86120 0.81071 1.00000 1.00000 0.62946 0.59618 0.55199 0.77017 0.71392 0.56886 0.66911 0.75636 0.85741 0.71901 0.74939 0.80044 0.67320 0.70913 1.00000 0.67154 0.44986 0.54148 1.00000 0.21839 0.24112 0.21870 0.24735 8 7.1096 165.537735 x: 0.38824 1.00000 0.86939 0.92548 1.00000 0.85363 0.86585 0.77743 0.82165 1.00000 1.00000 0.81829 0.89663 0.78984 1.00000 1.00000 0.63241 0.60314 0.57203 0.77829 0.71670 0.57218 0.65330 0.76451 0.88938 0.70924 0.72837 0.77878 0.70522 0.75641 1.00000 0.65269 0.43569 0.52637 1.00000 0.21839 0.24112 0.21870 0.24735 10 12.4933 164.710179 x: 0.31937 0.98963 0.83943 0.89445 1.00000 0.86785 0.86792 0.76947 0.83855 1.00000 1.00000 0.84780 0.93097 0.79148 1.00000 1.00000 0.61737 0.61686 0.58255 0.76430 0.71371 0.57418 0.64013 0.78513 0.92240 0.71892 0.73462 0.77881 0.73837 0.79583 1.00000 0.63825 0.42101 0.51363 1.00000 0.21839 0.24112 0.21870 0.24735 11 28.6001 163.690231 x: 0.30849 1.00000 0.83132 0.88174 1.00000 0.90084 0.88079 0.76986 0.86593 1.00000 1.00000 0.88416 0.97608 0.79541 1.00000 1.00000 0.59945 0.63370 0.59583 0.74977 0.71119 0.57745 0.62429 0.81623 0.96647 0.73286 0.74365 0.77931 0.77958 0.84416 1.00000 0.62096 0.40596 0.50029 1.00000 0.21839 0.24112 0.21870 0.24735 12 12.9759 163.302483 x: 0.31418 1.00000 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0.34298 1.00000 0.82774 0.82765 1.00000 0.89872 0.90300 0.74562 0.89743 1.00000 1.00000 0.90847 1.00000 0.79032 1.00000 1.00000 0.39186 0.67804 0.86551 0.69967 0.70777 0.62375 0.46295 0.95674 1.00000 0.68308 0.72774 0.69970 1.00000 1.00000 1.00000 0.42233 0.26025 0.38958 1.00000 0.21839 0.24112 0.21870 0.24735 19 1.4157 161.681430 x: 0.33721 1.00000 0.82956 0.83303 1.00000 0.89316 0.89742 0.74898 0.89724 1.00000 1.00000 0.90821 1.00000 0.79611 1.00000 1.00000 0.40046 0.67870 0.90635 0.70533 0.71307 0.62354 0.46450 1.00000 1.00000 0.67837 0.71305 0.69722 1.00000 1.00000 1.00000 0.42370 0.27168 0.39300 1.00000 0.21839 0.24112 0.21870 0.24735 20 0.9514 161.624429 x: 0.33617 1.00000 0.83343 0.84359 1.00000 0.88771 0.90171 0.74736 0.88990 1.00000 1.00000 0.90042 1.00000 0.78287 1.00000 1.00000 0.40786 0.68270 1.00000 0.70168 0.71701 0.62281 0.46094 0.99348 1.00000 0.68210 0.70009 0.70005 1.00000 1.00000 1.00000 0.42018 0.28610 0.39681 1.00000 0.21839 0.24112 0.21870 0.24735 21 0.4760 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0.2547 161.599048 x: 0.33218 1.00000 0.83901 0.86028 1.00000 0.88274 0.90033 0.74474 0.88560 1.00000 1.00000 0.88820 1.00000 0.77240 1.00000 1.00000 0.39995 0.66884 1.00000 0.70958 0.70909 0.62370 0.46754 1.00000 1.00000 0.65626 0.71307 0.69319 1.00000 1.00000 1.00000 0.43006 0.27167 0.40137 1.00000 0.21839 0.24112 0.21870 0.24735 26 0.7126 161.598561 x: 0.33268 1.00000 0.83978 0.86142 1.00000 0.88397 0.90086 0.74530 0.88624 1.00000 1.00000 0.88776 1.00000 0.77267 1.00000 1.00000 0.40013 0.66880 1.00000 0.70966 0.70929 0.62371 0.46749 0.99891 1.00000 0.65655 0.71289 0.69339 1.00000 1.00000 1.00000 0.43000 0.27200 0.40136 1.00000 0.21839 0.24112 0.21870 0.24735 27 0.7472 161.597464 x: 0.33194 1.00000 0.84064 0.86304 1.00000 0.88568 0.90152 0.74600 0.88719 1.00000 1.00000 0.88680 1.00000 0.77307 1.00000 1.00000 0.40049 0.66868 1.00000 0.70978 0.70970 0.62373 0.46737 1.00000 1.00000 0.65704 0.71240 0.69375 1.00000 1.00000 1.00000 0.42986 0.27264 0.40130 1.00000 0.21839 0.24112 0.21870 0.24735 28 0.8253 161.597007 x: 0.32978 1.00000 0.84094 0.86414 1.00000 0.88668 0.90184 0.74631 0.88785 1.00000 1.00000 0.88577 1.00000 0.77340 1.00000 1.00000 0.40089 0.66850 1.00000 0.70985 0.71015 0.62374 0.46722 0.99971 1.00000 0.65746 0.71172 0.69408 1.00000 1.00000 1.00000 0.42967 0.27340 0.40124 1.00000 0.21839 0.24112 0.21870 0.24735 29 0.1950 161.596348 x: 0.32940 1.00000 0.84181 0.86664 1.00000 0.88469 0.90090 0.74495 0.88787 1.00000 1.00000 0.88460 1.00000 0.77453 1.00000 1.00000 0.40294 0.66763 1.00000 0.71009 0.71235 0.62373 0.46640 0.99971 1.00000 0.66005 0.70840 0.69599 1.00000 1.00000 1.00000 0.42875 0.27819 0.40192 1.00000 0.21839 0.24112 0.21870 0.24735 30 0.2058 161.595960 x: 0.32936 1.00000 0.84031 0.86585 1.00000 0.88533 0.90205 0.74500 0.88838 1.00000 1.00000 0.88614 1.00000 0.77509 1.00000 1.00000 0.40486 0.66716 1.00000 0.71024 0.71414 0.62369 0.46563 0.99973 1.00000 0.66197 0.70495 0.69743 1.00000 1.00000 1.00000 0.42784 0.28225 0.40271 1.00000 0.21839 0.24112 0.21870 0.24735 31 0.0738 161.595920 x: 0.32954 1.00000 0.83999 0.86551 1.00000 0.88584 0.90189 0.74501 0.88793 1.00000 1.00000 0.88563 1.00000 0.77457 1.00000 1.00000 0.40515 0.66720 1.00000 0.71003 0.71418 0.62362 0.46547 0.99973 1.00000 0.66245 0.70446 0.69773 1.00000 1.00000 1.00000 0.42769 0.28269 0.40292 1.00000 0.21839 0.24112 0.21870 0.24735 32 0.0276 161.595905 x: 0.32949 1.00000 0.84007 0.86549 1.00000 0.88559 0.90190 0.74555 0.88800 1.00000 1.00000 0.88560 1.00000 0.77403 1.00000 1.00000 0.40538 0.66749 1.00000 0.70973 0.71391 0.62351 0.46530 0.99973 1.00000 0.66280 0.70403 0.69790 1.00000 1.00000 1.00000 0.42755 0.28262 0.40313 1.00000 0.21839 0.24112 0.21870 0.24735 33 0.0218 161.595900 x: 0.32941 1.00000 0.84018 0.86558 1.00000 0.88567 0.90170 0.74561 0.88790 1.00000 1.00000 0.88583 1.00000 0.77397 1.00000 1.00000 0.40549 0.66765 1.00000 0.70961 0.71374 0.62347 0.46522 0.99974 1.00000 0.66298 0.70383 0.69798 1.00000 1.00000 1.00000 0.42748 0.28248 0.40324 1.00000 0.21839 0.24112 0.21870 0.24735 34 0.0087 161.595894 x: 0.32940 1.00000 0.84019 0.86546 1.00000 0.88566 0.90166 0.74566 0.88785 1.00000 1.00000 0.88568 1.00000 0.77440 1.00000 1.00000 0.40564 0.66780 1.00000 0.70966 0.71353 0.62347 0.46510 0.99975 1.00000 0.66314 0.70348 0.69804 1.00000 1.00000 1.00000 0.42736 0.28211 0.40342 1.00000 0.21839 0.24112 0.21870 0.24735 35 0.0045 161.595885 x: 0.32931 1.00000 0.84024 0.86546 1.00000 0.88564 0.90189 0.74525 0.88796 1.00000 1.00000 0.88564 1.00000 0.77416 1.00000 1.00000 0.40572 0.66758 1.00000 0.71013 0.71354 0.62364 0.46501 0.99976 1.00000 0.66336 0.70329 0.69822 1.00000 1.00000 1.00000 0.42725 0.28163 0.40352 1.00000 0.21839 0.24112 0.21870 0.24735 36 0.0030 161.595868 x: 0.32920 1.00000 0.84011 0.86552 1.00000 0.88571 0.90146 0.74538 0.88817 1.00000 1.00000 0.88559 1.00000 0.77408 1.00000 1.00000 0.40554 0.66731 1.00000 0.70975 0.71374 0.62373 0.46508 0.99980 1.00000 0.66283 0.70342 0.69798 1.00000 1.00000 1.00000 0.42732 0.28210 0.40314 1.00000 0.21839 0.24112 0.21870 0.24735 37 0.0092 161.595863 x: 0.32909 1.00000 0.84011 0.86559 1.00000 0.88566 0.90165 0.74549 0.88786 1.00000 1.00000 0.88561 1.00000 0.77415 1.00000 1.00000 0.40546 0.66735 1.00000 0.70958 0.71380 0.62369 0.46513 0.99981 1.00000 0.66280 0.70369 0.69799 1.00000 1.00000 1.00000 0.42739 0.28235 0.40301 1.00000 0.21839 0.24112 0.21870 0.24735 38 0.0039 161.595863 x: 0.32909 1.00000 0.84011 0.86559 1.00000 0.88566 0.90165 0.74549 0.88786 1.00000 1.00000 0.88561 1.00000 0.77415 1.00000 1.00000 0.40546 0.66735 1.00000 0.70958 0.71380 0.62369 0.46513 0.99981 1.00000 0.66280 0.70369 0.69799 1.00000 1.00000 1.00000 0.42739 0.28235 0.40301 1.00000 0.21839 0.24112 0.21870 0.24735 check convergence! altree-v1.3.1/test/paml/unrooted_absent/association/run_altree0000755000175000017500000000105112043315246025016 0ustar vdanjeanvdanjean#!/bin/sh -x # To obtain the apomorphy list corresponding to the tree whose topology # has been reconstructed by phyML # paml uses the baseml.ctl file as the parameter file baseml #To perform the association test # The tree is not rooted so we have to specify the name of the # outgroup sequence to perform the association analysis which needs a # rooted tree. # The outgroup sequence is removed before the analysis ../../../../altree -i rst -j nb_cas_control.txt -a -t SNP \ --remove-outgroup --outgroup OUTG -p paml -r 1 -o 1_trio_ML.asso altree-v1.3.1/test/paml/unrooted_absent/association/baseml.ctl0000644000175000017500000000322312043315246024702 0ustar vdanjeanvdanjean seqfile = trio2.phy treefile = trio2.phy_phyml_tree.txt outfile = mlb * main result file noisy = 9 * 0,1,2,3: how much rubbish on the screen verbose = 1 * 1: detailed output, 0: concise output runmode = 0 * 0: user tree; 1: semi-automatic; 2: automatic * 3: StepwiseAddition; (4,5):PerturbationNNI model = 7 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85 * 5:T92, 6:TN93, 7:REV, 8:UNREST, 9:REVu; 10:UNRESTu Mgene = 0 * 0:rates, 1:separate; 2:diff pi, 3:diff kapa, 4:all diff * ndata = 1 clock = 1 * 0:no clock, 1:clock; 2:local clock; 3:CombinedAnalysis fix_kappa = 0 * 0: estimate kappa; 1: fix kappa at value below kappa = 5 * initial or fixed kappa fix_alpha = 1 * 0: estimate alpha; 1: fix alpha at value below alpha = 0 * initial or fixed alpha, 0:infinity (constant rate) Malpha = 0 * 1: different alpha's for genes, 0: one alpha ncatG = 5 * # of categories in the dG, AdG, or nparK models of rates nparK = 0 * rate-class models. 1:rK, 2:rK&fK, 3:rK&MK(1/K), 4:rK&MK nhomo = 0 * 0 & 1: homogeneous, 2: kappa for branches, 3: N1, 4: N2 getSE = 0 * 0: don't want them, 1: want S.E.s of estimates RateAncestor = 1 * (0,1,2): rates (alpha>0) or ancestral states Small_Diff = 7e-6 cleandata = 0 * remove sites with ambiguity data (1:yes, 0:no)? * icode = 0 * (with RateAncestor=1. try "GC" in data,model=4,Mgene=4) * fix_blength = -1 * 0: ignore, -1: random, 1: initial, 2: fixed method = 0 * 0: simultaneous; 1: one branch at a time altree-v1.3.1/test/paml/unrooted_absent/association/1_trio_ML.asso0000644000175000017500000001276212043315246025417 0ustar vdanjeanvdanjean /----* H006 case/control:23/19 | Site: 2 Sens: C-->G | /----* H031 case/control:1/0 | | Site: 8 Sens: G-->C | |----* H005 case/control:2/2 | | Site: 10 Sens: C-->G | | /----* H032 case/control:0/1 | | | Site: 7 Sens: G-->C | |----* 68 case/control:2/3 | | | Site: 4 Sens: G-->C | | \----* H016 case/control:2/2 | /----* 64+(65+(66+(67))) case/control:34/24 | | | Site: 6 Sens: C-->G | | |----* H008 case/control:28/19 | | \----* H024 case/control:1/0 | | Site: 9 Sens: G-->C | /----* 63 case/control:45/26 | | | Site: 5 Sens: G-->C | | \----* H004 case/control:11/2 |----* 62 case/control:47/29 | | Site: 1 Sens: C-->G | \----* H025 case/control:2/3 -----* 60+(61)+(42) case/control:200/200 | | [0] ddl=3 chi2=6.69 p_value_chi2=0.0824 | [1] ddl=7 chi2=11.30 p_value_chi2=0.102 | [2] ddl=11 chi2=24.02 p_value_chi2=0.007 | [3] ddl=20 chi2=39.11 p_value_chi2=0.001 | [4] ddl=24 chi2=54.71 p_value_chi2=0.001 | [5] ddl=28 chi2=63.21 p_value_chi2=0 | [6] ddl=32 chi2=65.94 p_value_chi2=0 | [7] ddl=33 chi2=67.18 p_value_chi2=0 | [8] ddl=34 chi2=68.34 p_value_chi2=0 | /----* H010 case/control:1/3 | /----* 53 case/control:1/4 | | | Site: 10 Sens: C-->G | | \----* H033 case/control:0/1 | | Site: 1 Sens: C-->G | | /----* H027 case/control:1/2 | | | Site: 6 Sens: C-->G | | | Site: 10 Sens: C-->G | | |----* H017 case/control:0/8 | |----* 54+(55) case/control:3/13 | | | Site: 3 Sens: G-->C | | \----* H014 case/control:2/3 | | Site: 1 Sens: C-->G | /----* 50+(51+(52)) case/control:9/25 | | | Site: 4 Sens: G-->C | | |----* H011 case/control:3/8 | | \----* H003 case/control:2/0 | | Site: 5 Sens: G-->C | |----* H018 case/control:2/2 | /----* 48+(49) case/control:40/39 | | | Site: 2 Sens: G-->C | | | /----* H022 case/control:9/1 | | | /----* 58 case/control:27/9 | | | | | Site: 5 Sens: G-->C | | | | | /----* H013 case/control:15/5 | | | | \----* 59 case/control:18/8 | | | | | Site: 6 Sens: C-->G | | | | \----* H019 case/control:3/3 | | | | Site: 10 Sens: G-->C | | | /----* 57 case/control:28/9 | | | | | Site: 10 Sens: C-->G | | | | \----* H034 case/control:1/0 | | \----* 56 case/control:29/12 | | | Site: 1 Sens: C-->G | | \----* H029 case/control:1/3 | |----* H020 case/control:5/9 | | Site: 10 Sens: C-->G | /----* 45+(46+(47)) case/control:71/93 | | | Site: 8 Sens: G-->C | | |----* H001 case/control:24/39 | | \----* H015 case/control:2/6 | | Site: 9 Sens: C-->G | /----* 44 case/control:75/93 | | | Site: 7 Sens: G-->C | | | Site: 2 Sens: C-->G | | \----* H028 case/control:4/0 |----* 43 case/control:76/94 | | Site: 9 Sens: G-->C | \----* H030 case/control:1/1 | /----* H035 case/control:1/0 | | Site: 10 Sens: C-->G | |----* H007 case/control:25/36 \----* 41+(40) case/control:54/58 | Site: 4 Sens: G-->C | /----* H026 case/control:1/0 | | Site: 1 Sens: C-->G | |----* H023 case/control:1/5 \----* 39+(69) case/control:28/22 | Site: 3 Sens: G-->C | /----* H012 case/control:1/2 | | /----* H021 case/control:11/2 | | | Site: 8 Sens: G-->C | | | Site: 1 Sens: C-->G | |----* 70 case/control:20/5 | | | Site: 5 Sens: G-->C | | \----* H002 case/control:9/3 \----* 38+(37) case/control:26/17 | Site: 6 Sens: C-->G \----* H009 case/control:5/10 Site: 8 Sens: G-->C Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 altree-v1.3.1/test/paml/unrooted_absent/association/mlb0000644000175000017500000005124512043315246023437 0ustar vdanjeanvdanjean seed used = 30455833 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC BASEML (in paml 3.14, January 2004) trio2.phy REV Global clock ns = 36 ls = 10 # site patterns = 10 1 1 1 1 1 1 1 1 1 1 H019 GCGGCGCCCC H026 ..CCGCGGG. H004 .....CGGG. H020 CG..GC...G H034 ....GC...G H027 C.CCG....G H023 C.CCGCGGG. H016 ...C..GGG. H002 C.CC..GGG. H015 CG..GC..G. H006 CG..GCGGG. H001 CG..GC.... H010 C..CGC...G H028 CG..GC.G.. H024 ......GG.. H017 C.CCGC.... H009 C.CCG.G.G. H007 C..CGCGGG. H033 ...CGC...G H008 ......GGG. H029 ....GC.... H003 C..C.C.... H035 C..CGCGGGG H013 .........G H032 ...C...GG. H025 ....GCGGG. H021 ..CC..G.G. H030 C...GCGG.. H031 ......G.G. H012 C.CCG.GGG. H005 ......GGGG H011 C..CGC.... H022 .....C...G H014 ..CCGC.... H018 C...GC.... OUTG C...GCGGG. Frequencies.. T C A G H019 0.0000 0.6000 0.0000 0.4000 H026 0.0000 0.5000 0.0000 0.5000 H004 0.0000 0.4000 0.0000 0.6000 H020 0.0000 0.5000 0.0000 0.5000 H034 0.0000 0.5000 0.0000 0.5000 H027 0.0000 0.7000 0.0000 0.3000 H023 0.0000 0.6000 0.0000 0.4000 H016 0.0000 0.4000 0.0000 0.6000 H002 0.0000 0.6000 0.0000 0.4000 H015 0.0000 0.5000 0.0000 0.5000 H006 0.0000 0.3000 0.0000 0.7000 H001 0.0000 0.6000 0.0000 0.4000 H010 0.0000 0.7000 0.0000 0.3000 H028 0.0000 0.5000 0.0000 0.5000 H024 0.0000 0.4000 0.0000 0.6000 H017 0.0000 0.9000 0.0000 0.1000 H009 0.0000 0.6000 0.0000 0.4000 H007 0.0000 0.5000 0.0000 0.5000 H033 0.0000 0.6000 0.0000 0.4000 H008 0.0000 0.3000 0.0000 0.7000 H029 0.0000 0.6000 0.0000 0.4000 H003 0.0000 0.9000 0.0000 0.1000 H035 0.0000 0.4000 0.0000 0.6000 H013 0.0000 0.5000 0.0000 0.5000 H032 0.0000 0.5000 0.0000 0.5000 H025 0.0000 0.3000 0.0000 0.7000 H021 0.0000 0.6000 0.0000 0.4000 H030 0.0000 0.5000 0.0000 0.5000 H031 0.0000 0.4000 0.0000 0.6000 H012 0.0000 0.5000 0.0000 0.5000 H005 0.0000 0.2000 0.0000 0.8000 H011 0.0000 0.8000 0.0000 0.2000 H022 0.0000 0.6000 0.0000 0.4000 H014 0.0000 0.8000 0.0000 0.2000 H018 0.0000 0.7000 0.0000 0.3000 OUTG 0.0000 0.4000 0.0000 0.6000 Average 0.0000 0.5389 0.0000 0.4611 # constant sites: 0 (0.00%) ln Lmax (unconstrained) = -23.025851 Distances: TN93 (kappa) (alpha set at 0.00) This matrix is not used in later m.l. analysis. H019 H026 9.0000( 0.0000) H004 nan(999.0000) nan(999.0000) H020 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H034 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H027 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H023 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H016 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H002 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H015 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H006 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H001 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H010 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H028 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H024 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H017 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H009 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H007 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H033 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H008 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H029 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H003 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H035 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H013 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H032 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H025 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H021 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H030 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H031 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H012 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H005 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H011 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H022 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H014 nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H018 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) OUTG 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) TREE # 1: (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); MP score: 38.00 lnL(ntime: 34 np: 39): -161.595863 +0.000000 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 0.32909 0.32909 0.27647 0.23931 0.23931 0.21195 0.19110 0.14247 0.12649 0.12649 0.12649 0.11202 0.11202 0.08672 0.08672 0.08672 0.03516 0.05787 0.05787 0.07949 0.05674 0.03539 0.01646 0.21191 0.21191 0.14045 0.09884 0.06899 0.06899 0.06899 0.06899 0.02948 0.07806 0.13263 1.00000 0.21839 0.24112 0.21870 0.24735 tree length = 4.99889 (((((((((((((((((H010, H033), (H027, (H017, H014))), H011), H003), H018), (((H022, (H013, H019)), H034), H029)), H020), H001), H015), H028), H030), ((H006, ((((((H031, H005), (H032, H016)), H008), H024), H004), H025)), OUTG)), H035), H007), (H026, H023)), H012), (H021, H002), H009); (((((((((((((((((H010: 0.035163, H033: 0.035163): 0.051559, (H027: 0.057874, (H017: 0.057874, H014: 0.057874): 0.000000): 0.028848): 0.000000, H011: 0.086722): 0.000000, H003: 0.086722): 0.025300, H018: 0.112022): 0.000000, (((H022: 0.035387, (H013: 0.016460, H019: 0.016460): 0.018928): 0.021351, H034: 0.056739): 0.022749, H029: 0.079488): 0.032534): 0.014469, H020: 0.126491): 0.000000, H001: 0.126491): 0.000000, H015: 0.126491): 0.015976, H028: 0.142467): 0.048638, H030: 0.191105): 0.020845, ((H006: 0.211909, ((((((H031: 0.068986, H005: 0.068986): 0.000000, (H032: 0.029484, H016: 0.029484): 0.039502): 0.000000, H008: 0.068986): 0.000000, H024: 0.068986): 0.029849, H004: 0.098835): 0.041617, H025: 0.140453): 0.071456): 0.000000, OUTG: 0.211909): 0.000041): 0.027363, H035: 0.239313): 0.000000, H007: 0.239313): 0.037161, (H026: 0.078062, H023: 0.078062): 0.198413): 0.052620, H012: 0.329094): 0.000000, (H021: 0.132628, H002: 0.132628): 0.196467, H009: 0.329095); Detailed output identifying parameters Parameters in the rate matrix (REV) (Yang 1994 J Mol Evol 39:105-111): Rate parameters: 1.00000 0.21839 0.24112 0.21870 0.24735 Base frequencies: 0.00000 0.53889 0.00000 0.46111 Rate matrix Q, Average Ts/Tv = 0.0000 -5.288293 4.383835 0.000000 0.904458 0.000000 -0.927835 0.000000 0.927835 0.000000 0.958761 -4.709878 3.751117 0.000000 1.084337 0.000000 -1.084337 check convergence.. altree-v1.3.1/test/paml/unrooted_absent/association/lnf0000644000175000017500000000151612043315246023440 0ustar vdanjeanvdanjean -1 10 10 1 1 1 -21.7701316508 0.0000 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC 2 1 -13.4855220119 0.0000 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC 3 1 -11.8101938263 0.0001 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG 4 1 -15.5093284894 0.0000 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG 5 1 -15.9586997510 0.0000 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG 6 1 -18.0353689751 0.0000 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC 7 1 -11.7888575463 0.0001 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG 8 1 -14.6248990790 0.0000 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG 9 1 -13.6573284377 0.0000 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG 10 1 -24.9555331769 0.0000 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCCaltree-v1.3.1/test/paml/unrooted_absent/association/trio2.phy0000644000175000017500000000143612043315246024520 0ustar vdanjeanvdanjean 36 10 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC altree-v1.3.1/test/paml/unrooted_absent/association/rst10000644000175000017500000000000112043315246023536 0ustar vdanjeanvdanjean altree-v1.3.1/test/paml/unrooted_absent/association/nb_cas_control.txt0000644000175000017500000000101512043315246026456 0ustar vdanjeanvdanjeanH019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 altree-v1.3.1/test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt0000644000175000017500000000154612043315246027570 0ustar vdanjeanvdanjean(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896); altree-v1.3.1/test/paml/unrooted_absent/association/2base.t0000644000175000017500000001314312043315246024116 0ustar vdanjeanvdanjean 36 H019 H026 9.0000 H004 nan nan H020 9.0000 9.0000 9.0000 H034 nan 9.0000 9.0000 nan H027 9.0000 9.0000 9.0000 nan nan H023 9.0000 nan nan 9.0000 9.0000 9.0000 H016 nan nan nan 9.0000 9.0000 9.0000 nan H002 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan H015 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 H006 9.0000 nan nan nan 9.0000 9.0000 nan 9.0000 9.0000 nan H001 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan nan H010 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan H028 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan nan nan nan H024 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 H017 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 H009 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan H007 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan H033 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 nan 9.0000 9.0000 H008 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan 9.0000 H029 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan 9.0000 H003 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan 9.0000 nan H035 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 H013 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 H032 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan 9.0000 nan 9.0000 nan 9.0000 nan H025 9.0000 nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 nan H021 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 H030 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan nan nan nan nan 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 H031 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 nan nan nan nan 9.0000 H012 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan 9.0000 H005 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 H011 nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 H022 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan H014 nan nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan H018 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan OUTG 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan altree-v1.3.1/test/paml/unrooted_absent/association/rst0000644000175000017500000003107512043315246023474 0ustar vdanjeanvdanjeanSupplemental results for BASEML seqf: trio2.phy treef: trio2.phy_phyml_tree.txt TREE # 1 Ancestral reconstruction by BASEML. (((((((((((((((((H010: 0.035163, H033: 0.035163): 0.051559, (H027: 0.057874, (H017: 0.057874, H014: 0.057874): 0.000000): 0.028848): 0.000000, H011: 0.086722): 0.000000, H003: 0.086722): 0.025300, H018: 0.112022): 0.000000, (((H022: 0.035387, (H013: 0.016460, H019: 0.016460): 0.018928): 0.021351, H034: 0.056739): 0.022749, H029: 0.079488): 0.032534): 0.014469, H020: 0.126491): 0.000000, H001: 0.126491): 0.000000, H015: 0.126491): 0.015976, H028: 0.142467): 0.048638, H030: 0.191105): 0.020845, ((H006: 0.211909, ((((((H031: 0.068986, H005: 0.068986): 0.000000, (H032: 0.029484, H016: 0.029484): 0.039502): 0.000000, H008: 0.068986): 0.000000, H024: 0.068986): 0.029849, H004: 0.098835): 0.041617, H025: 0.140453): 0.071456): 0.000000, OUTG: 0.211909): 0.000041): 0.027363, H035: 0.239313): 0.000000, H007: 0.239313): 0.037161, (H026: 0.078062, H023: 0.078062): 0.198413): 0.052620, H012: 0.329094): 0.000000, (H021: 0.132628, H002: 0.132628): 0.196467, H009: 0.329095); (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 tree with node labels for Rod Page's TreeView (((((((((((((((((13_H010: 0.035163, 19_H033: 0.035163) 53 : 0.051559, (6_H027: 0.057874, (16_H017: 0.057874, 34_H014: 0.057874) 55 : 0.000000) 54 : 0.028848) 52 : 0.000000, 32_H011: 0.086722) 51 : 0.000000, 22_H003: 0.086722) 50 : 0.025300, 35_H018: 0.112022) 49 : 0.000000, (((33_H022: 0.035387, (24_H013: 0.016460, 1_H019: 0.016460) 59 : 0.018928) 58 : 0.021351, 5_H034: 0.056739) 57 : 0.022749, 21_H029: 0.079488) 56 : 0.032534) 48 : 0.014469, 4_H020: 0.126491) 47 : 0.000000, 12_H001: 0.126491) 46 : 0.000000, 10_H015: 0.126491) 45 : 0.015976, 14_H028: 0.142467) 44 : 0.048638, 28_H030: 0.191105) 43 : 0.020845, ((11_H006: 0.211909, ((((((29_H031: 0.068986, 31_H005: 0.068986) 67 : 0.000000, (25_H032: 0.029484, 8_H016: 0.029484) 68 : 0.039502) 66 : 0.000000, 20_H008: 0.068986) 65 : 0.000000, 15_H024: 0.068986) 64 : 0.029849, 3_H004: 0.098835) 63 : 0.041617, 26_H025: 0.140453) 62 : 0.071456) 61 : 0.000000, 36_OUTG: 0.211909) 60 : 0.000041) 42 : 0.027363, 23_H035: 0.239313) 41 : 0.000000, 18_H007: 0.239313) 40 : 0.037161, (2_H026: 0.078062, 7_H023: 0.078062) 69 : 0.198413) 39 : 0.052620, 30_H012: 0.329094) 38 : 0.000000, (27_H021: 0.132628, 9_H002: 0.132628) 70 : 0.196467, 17_H009: 0.329095) 37 ; Nodes 37 to 70 are ancestral (1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650). Prob of best character at each node, listed by site Site Freq Data: 1 1 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC: C(0.989) C(0.989) C(0.993) C(0.999) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(0.948) C(0.998) C(0.998) G(0.948) G(0.997) G(1.000) G(1.000) C(0.999) C(0.999) G(0.924) G(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.824) C(0.824) 2 1 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC: C(0.998) C(0.998) C(0.999) C(0.999) C(0.999) C(0.992) C(0.932) G(0.758) G(0.787) G(0.787) G(0.787) C(0.994) C(0.994) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.992) C(0.992) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.996) 3 1 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG: C(0.908) C(0.908) C(0.703) G(0.975) G(0.975) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.992) C(0.992) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.990) C(0.989) 4 1 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG: C(0.989) C(0.989) C(0.967) C(0.892) C(0.892) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(0.998) G(0.998) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.997) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.977) C(0.998) C(0.996) 5 1 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG: G(0.974) G(0.974) G(0.996) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.994) G(0.943) C(0.969) C(1.000) G(1.000) G(1.000) G(0.826) C(0.942) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.999) C(0.916) 6 1 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC: G(0.757) G(0.757) C(0.896) C(0.995) C(0.995) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.998) C(0.998) C(1.000) C(0.997) C(0.956) G(0.987) C(1.000) C(1.000) C(0.968) C(0.844) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.996) G(0.978) 7 1 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG: G(0.999) G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(0.932) C(0.956) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.964) G(0.999) G(0.997) 8 1 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG: G(0.949) G(0.949) G(0.993) G(1.000) G(1.000) G(1.000) G(0.978) G(0.696) C(0.998) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.809) 9 1 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG: G(0.999) G(0.999) G(0.999) G(1.000) G(1.000) G(0.997) C(0.670) C(0.982) C(0.998) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.997) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.997) 10 1 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC: C(0.998) C(0.998) C(0.999) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(0.999) G(0.978) C(0.998) C(0.998) C(0.902) G(0.903) G(0.942) G(0.927) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.996) Summary of changes along branches. Check root for directions of change. Branch 1: 37..38 Branch 2: 38..39 6 G 0.757 -> C 0.896 Branch 3: 39..40 3 C 0.703 -> G 0.975 Branch 4: 40..41 Branch 5: 41..42 4 C 0.892 -> G 0.997 Branch 6: 42..43 9 G 0.997 -> C 0.670 Branch 7: 43..44 2 C 0.932 -> G 0.758 7 G 0.932 -> C 0.956 Branch 8: 44..45 8 G 0.696 -> C 0.998 Branch 9: 45..46 Branch 10: 46..47 Branch 11: 47..48 2 G 0.787 -> C 0.994 Branch 12: 48..49 Branch 13: 49..50 4 G 0.998 -> C 0.999 Branch 14: 50..51 Branch 15: 51..52 Branch 16: 52..53 10 C 0.999 -> G 0.978 Branch 17: 53..13 (H010) Branch 18: 53..19 (H033) 1 C 0.948 -> G Branch 19: 52..54 3 G 1.000 -> C 0.992 Branch 20: 54..6 (H027) 6 C 0.998 -> G 10 C 0.998 -> G Branch 21: 54..55 Branch 22: 55..16 (H017) Branch 23: 55..34 (H014) 1 C 0.998 -> G Branch 24: 51..32 (H011) Branch 25: 50..22 (H003) 5 G 1.000 -> C Branch 26: 49..35 (H018) Branch 27: 48..56 1 C 0.999 -> G 0.948 Branch 28: 56..57 10 C 0.902 -> G 0.903 Branch 29: 57..58 5 G 0.943 -> C 0.969 Branch 30: 58..33 (H022) Branch 31: 58..59 6 C 0.956 -> G 0.987 Branch 32: 59..24 (H013) Branch 33: 59..1 (H019) 10 G 0.927 -> C Branch 34: 57..5 (H034) Branch 35: 56..21 (H029) Branch 36: 47..4 (H020) 10 C 1.000 -> G Branch 37: 46..12 (H001) Branch 38: 45..10 (H015) 9 C 0.998 -> G Branch 39: 44..14 (H028) Branch 40: 43..28 (H030) Branch 41: 42..60 Branch 42: 60..61 Branch 43: 61..11 (H006) 2 C 0.992 -> G Branch 44: 61..62 1 C 0.999 -> G 0.924 Branch 45: 62..63 5 G 0.826 -> C 0.942 Branch 46: 63..64 6 C 0.844 -> G 1.000 Branch 47: 64..65 Branch 48: 65..66 Branch 49: 66..67 Branch 50: 67..29 (H031) 8 G 1.000 -> C Branch 51: 67..31 (H005) 10 C 1.000 -> G Branch 52: 66..68 4 G 1.000 -> C 0.977 Branch 53: 68..25 (H032) 7 G 0.964 -> C Branch 54: 68..8 (H016) Branch 55: 65..20 (H008) Branch 56: 64..15 (H024) 9 G 1.000 -> C Branch 57: 63..3 (H004) Branch 58: 62..26 (H025) Branch 59: 60..36 (OUTG) Branch 60: 41..23 (H035) 10 C 0.998 -> G Branch 61: 40..18 (H007) Branch 62: 39..69 Branch 63: 69..2 (H026) 1 C 0.824 -> G Branch 64: 69..7 (H023) Branch 65: 38..30 (H012) Branch 66: 37..70 5 G 0.974 -> C 0.916 Branch 67: 70..27 (H021) 1 C 0.824 -> G 8 G 0.809 -> C Branch 68: 70..9 (H002) Branch 69: 37..17 (H009) 8 G 0.949 -> C List of extant and reconstructed sequences H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC node #37 CCCCGGGGGC node #38 CCCCGGGGGC node #39 CCCCGCGGGC node #40 CCGCGCGGGC node #41 CCGCGCGGGC node #42 CCGGGCGGGC node #43 CCGGGCGGCC node #44 CGGGGCCGCC node #45 CGGGGCCCCC node #46 CGGGGCCCCC node #47 CGGGGCCCCC node #48 CCGGGCCCCC node #49 CCGGGCCCCC node #50 CCGCGCCCCC node #51 CCGCGCCCCC node #52 CCGCGCCCCC node #53 CCGCGCCCCG node #54 CCCCGCCCCC node #55 CCCCGCCCCC node #56 GCGGGCCCCC node #57 GCGGGCCCCG node #58 GCGGCCCCCG node #59 GCGGCGCCCG node #60 CCGGGCGGGC node #61 CCGGGCGGGC node #62 GCGGGCGGGC node #63 GCGGCCGGGC node #64 GCGGCGGGGC node #65 GCGGCGGGGC node #66 GCGGCGGGGC node #67 GCGGCGGGGC node #68 GCGCCGGGGC node #69 CCCCGCGGGC node #70 CCCCCGGGGC Overall accuracy of the 34 ancestral sequences: 0.95602 0.95602 0.95455 0.98584 0.98584 0.99846 0.95098 0.93915 0.97828 0.97828 0.97828 0.99902 0.99902 0.99985 0.99985 0.99985 0.99250 0.99861 0.99861 0.98433 0.98398 0.98669 0.99137 0.99846 0.99846 0.97139 0.97803 0.99999 0.99999 0.99999 0.99999 0.99410 0.97995 0.94975 for a site. 0.61783 0.61783 0.59678 0.86222 0.86222 0.98464 0.56794 0.49507 0.78363 0.78363 0.78363 0.99023 0.99023 0.99850 0.99850 0.99850 0.92619 0.98612 0.98612 0.84934 0.84626 0.87260 0.91468 0.98469 0.98469 0.73579 0.79053 0.99994 0.99994 0.99994 0.99994 0.94183 0.80398 0.57972 for the sequence. Counts of changes at sites 1 CG CG CG CG CG CG (6) 2 CG CG GC (3) 3 CG GC (2) 4 CG GC GC (3) 5 GC GC GC GC (4) 6 CG GC CG CG (4) 7 GC GC (2) 8 GC GC GC GC (4) 9 CG GC GC (3) 10 GC CG CG CG CG CG CG (7) altree-v1.3.1/test/phylip/0000755000175000017500000000000012252703410015574 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/phylip/ancestor_absent/0000755000175000017500000000000012252703410020746 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/phylip/ancestor_absent/association/0000755000175000017500000000000012252703410023262 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/phylip/ancestor_absent/association/trio.phy0000644000175000017500000000141112043315246024762 0ustar vdanjeanvdanjean 35 10 H019 0100101111 H026 0111010001 H004 0100110001 H020 1000011110 H034 0100011110 H027 1111001110 H023 1111010001 H016 0101100001 H002 1111100001 H015 1000011101 H006 1000010001 H001 1000011111 H010 1101011110 H028 1000011011 H024 0100100011 H017 1111011111 H009 1111000101 H007 1101010001 H033 0101011110 H008 0100100001 H029 0100011111 H003 1101111111 H035 1101010000 H013 0100101110 H032 0101101001 H025 0100010001 H021 0111100101 H030 1100010011 H031 0100100101 H012 1111000001 H005 0100100000 H011 1101011111 H022 0100111110 H014 0111011111 H018 1100011111 altree-v1.3.1/test/phylip/ancestor_absent/association/nb_cas_controls.txt0000644000175000017500000000101512043315246027174 0ustar vdanjeanvdanjeanH019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 altree-v1.3.1/test/phylip/ancestor_absent/association/run_altree0000755000175000017500000000064312043315246025357 0ustar vdanjeanvdanjean#!/bin/sh -x #To run phylip options a and 5 were selected phylip mix # to run the association test. # The ancestral sequence is not in the phylip output file, that's why we # have to specify it with the --anc-seq option # Only one permutation is performed... altree -i outfile -j nb_cas_controls.txt \ -a -t SNP -p phylip -r 1 --data-qual qualitative \ --tree-to-analyse 1 --anc-seq 1100010001 -o 1_trio_phy.asso altree-v1.3.1/test/phylip/ancestor_absent/association/1_trio_phy.asso0000644000175000017500000001714512043315246026242 0ustar vdanjeanvdanjean /----* H030 (LEVEL: 1) case/control:1/1 | Site: 9 Sens: 0-->1 |----* H006 (LEVEL: 1) case/control:23/19 | Site: 2 Sens: 1-->0 -----* 10+(27)+(1) (LEVEL: 0) case/control:200/200 | | [0] ddl=3 chi2=0.52 p_value_chi2=0.86 | [1] ddl=6 chi2=4.29 p_value_chi2=0.674 | [2] ddl=9 chi2=15.63 p_value_chi2=0.041 | [3] ddl=15 chi2=22.00 p_value_chi2=0.068 | [4] ddl=18 chi2=31.34 p_value_chi2=0.011 | [5] ddl=19 chi2=31.42 p_value_chi2=0.02 | [6] ddl=20 chi2=39.94 p_value_chi2=0.001 | [7] ddl=21 chi2=50.63 p_value_chi2=0 | [8] ddl=23 chi2=52.46 p_value_chi2=0 | [9] ddl=24 chi2=52.99 p_value_chi2=0 | [10] ddl=25 chi2=53.21 p_value_chi2=0.001 | [11] ddl=28 chi2=59.22 p_value_chi2=0 | [12] ddl=31 chi2=61.68 p_value_chi2=0 | [13] ddl=34 chi2=68.34 p_value_chi2=0 | /----* H035 (LEVEL: 2) case/control:1/0 | | Site: 10 Sens: 1-->0 | |----* H007 (LEVEL: 2) case/control:25/36 |----* 17+(22) (LEVEL: 1) case/control:54/58 | | Site: 4 Sens: 0-->1 | | /----* H023 (LEVEL: 3) case/control:1/5 | | | /----* H021 (LEVEL: 5) case/control:11/2 | | | | Site: 1 Sens: 1-->0 | | | | Site: 5 Sens: 0-->1 | | | /----* 26 (LEVEL: 4) case/control:16/12 | | | | | Site: 8 Sens: 0-->1 | | | | \----* H009 (LEVEL: 5) case/control:5/10 | | | |----* H012 (LEVEL: 4) case/control:1/2 | | |----* 16+(29) (LEVEL: 3) case/control:26/17 | | | | Site: 6 Sens: 1-->0 | | | \----* H002 (LEVEL: 4) case/control:9/3 | | | Site: 5 Sens: 0-->1 | \----* 6+(8) (LEVEL: 2) case/control:28/22 | | Site: 3 Sens: 0-->1 | \----* H026 (LEVEL: 3) case/control:1/0 | Site: 1 Sens: 1-->0 | /----* H025 (LEVEL: 2) case/control:2/3 \----* 25 (LEVEL: 1) case/control:122/122 | Site: 1 Sens: 1-->0 | /----* H004 (LEVEL: 3) case/control:11/2 \----* 2 (LEVEL: 2) case/control:120/119 | Site: 5 Sens: 0-->1 | /----* H005 (LEVEL: 4) case/control:2/2 | | Site: 10 Sens: 1-->0 | |----* H008 (LEVEL: 4) case/control:28/19 | |----* H031 (LEVEL: 4) case/control:1/0 | | Site: 8 Sens: 0-->1 \----* 19+(30)+(7+(28)) (LEVEL: 3) case/control:109/117 | Site: 6 Sens: 1-->0 | /----* H032 (LEVEL: 5) case/control:0/1 | | Site: 7 Sens: 0-->1 |----* 24 (LEVEL: 4) case/control:2/3 | | Site: 4 Sens: 0-->1 | \----* H016 (LEVEL: 5) case/control:2/2 | /----* H024 (LEVEL: 5) case/control:1/0 \----* 14 (LEVEL: 4) case/control:76/93 | Site: 9 Sens: 0-->1 | /----* H013 (LEVEL: 7) case/control:15/5 | /----* 23 (LEVEL: 6) case/control:72/90 | | | Site: 10 Sens: 1-->0 | | | /----* H022 (LEVEL: 8) case/control:9/1 | | \----* 32 (LEVEL: 7) case/control:57/85 | | | Site: 6 Sens: 0-->1 | | | /----* H029 (LEVEL: 9) case/control:1/3 | | | | Site: 10 Sens: 0-->1 | | | |----* H034 (LEVEL: 9) case/control:1/0 | | \----* 4+(20) (LEVEL: 8) case/control:48/84 | | | Site: 5 Sens: 1-->0 | | | /----* H033 (LEVEL: 10) case/control:0/1 | | \----* 18 (LEVEL: 9) case/control:46/81 | | | Site: 4 Sens: 0-->1 | | | /----* H010 (LEVEL: 11) case/control:1/3 | | \----* 12 (LEVEL: 10) case/control:46/80 | | | Site: 1 Sens: 0-->1 | | | /----* H011 (LEVEL: 12) case/control:3/8 | | | |----* H003 (LEVEL: 12) case/control:2/0 | | | | Site: 5 Sens: 0-->1 | | \----* 21+(31)+(5) (LEVEL: 11) case/control:45/77 | | | Site: 10 Sens: 0-->1 | | | /----* H014 (LEVEL: 13) case/control:2/3 | | | | Site: 1 Sens: 1-->0 | | | |----* H017 (LEVEL: 13) case/control:0/8 | | |----* 33+(15) (LEVEL: 12) case/control:3/13 | | | | Site: 3 Sens: 0-->1 | | | \----* H027 (LEVEL: 13) case/control:1/2 | | | Site: 6 Sens: 1-->0 | | | Site: 10 Sens: 1-->0 | | | /----* H018 (LEVEL: 13) case/control:2/2 | | \----* 34 (LEVEL: 12) case/control:37/56 | | | Site: 4 Sens: 1-->0 | | | /----* H028 (LEVEL: 14) case/control:4/0 | | | | Site: 8 Sens: 1-->0 | | | |----* H001 (LEVEL: 14) case/control:24/39 | | \----* 11+(13)+(9) (LEVEL: 13) case/control:35/54 | | | Site: 2 Sens: 1-->0 | | |----* H015 (LEVEL: 14) case/control:2/6 | | | Site: 9 Sens: 1-->0 | | \----* H020 (LEVEL: 14) case/control:5/9 | | Site: 10 Sens: 1-->0 \----* 3 (LEVEL: 5) case/control:75/93 | Site: 8 Sens: 0-->1 | Site: 7 Sens: 0-->1 \----* H019 (LEVEL: 6) case/control:3/3 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0.5 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 level 10 p-value (non corrected) 0 level 11 p-value (non corrected) 0 level 12 p-value (non corrected) 0 level 13 p-value (non corrected) 0 level 14 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 altree-v1.3.1/test/phylip/ancestor_absent/association/outtree0000644000175000017500000006163412043315246024712 0ustar vdanjeanvdanjean((H030,H006),(((H035,H007),(H023,(((H021,H009),(H012,H002)),H026))), (H025,(H004,((H005,H008),((H031,(H032,H016)),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H005,H008),((H024,(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019)))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,(((H005,H008),(H032,H016)),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019)))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H005,(H008,(H032,H016))),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019)))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H008,(H005,(H032,H016))),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019)))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H005,H008),((H032,H016),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019))))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H032,H016),((H005,H008),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019))))))))))[0.0100]; (H006,((H030,(H007,(H035,(H023,((H009,(H012,H002)),H026))))),(H025, (H004,(H008,(H024,(H005,(((H021,H032),H016),(H031,((H013,(H022,((H029, H034),(H033,(H010,((H017,(H014,H027)),((H011,H003),(H018,(H028,(H001, (H015,H020))))))))))),H019))))))))))[0.0100]; (H006,((H030,((H035,H007),(H023,((H009,(H012,H002)),H026)))),(H025, (H004,(H008,(H024,(H005,(((H021,H032),H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H006,((H030,(H007,(H035,(H023,((H009,(H012,H002)),H026))))),(H025, (H004,(H008,(H024,(H005,(((H021,H032),H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H006,((H030,(H035,(H007,(H023,((H009,(H012,H002)),H026))))),(H025, (H004,(H008,(H024,(H005,((H032,(H021,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H006,((H030,(H035,(H007,(H023,((H009,(H012,(H021,H002))),H026))))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; ((H030,H006),((H035,(H007,(H023,(((H021,H009),(H012,H002)),H026)))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H006,(H030,((H035,(H007,(H023,(((H021,H009),(H012,H002)),H026)))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,(((H021,H009),(H012,H002)),H026)))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H008,((H005,H024),((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,((H005,H008),(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,((H005,H008),(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H011,(H003,((H014,(H017,H027)),(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H008,(H005,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H008,(H005,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H011,(H003,((H014,(H017,H027)),(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H005,(H008,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,H003),((H017,(H014,H027)),(H018,(H028,(H001, (H015,H020)))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H005,(H008,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,(H011,((H017,(H014,H027)),(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H005,(H008,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H005,(H008,(H024,((H032,H016),(H031,((H013,(H022,(H029, 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((H030,H006),(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))), (H025,(H004,((H032,H016),((H005,H008),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H001,(H028, (H015,H020))))))))))),H019)))))))))[0.0100]; ((H030,H006),(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))), (H025,(H004,((H032,H016),((H005,H008),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019)))))))))[0.0100]; (H006,(H030,(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))), (H025,(H004,((H032,H016),((H005,H008),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019))))))))))[0.0100]; (H030,(H006,(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))), (H025,(H004,((H032,H016),((H005,H008),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019))))))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,((H029, H034),(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019)))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H034, (H029,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019)))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,((H032,H016),(((H005,H008),H024),(H031,((H013,(H022,((H029, H034),(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),(((H021,H009),(H012,H002)),(H023,H026))),((H030,H006), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),(((H012,(H021,H009)),H002),(H023,H026))),((H030,H006), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),(((H021,H009),(H012,H002)),(H023,H026))),(H030,(H006, (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))))[0.0100]; (((H035,H007),(((H021,H009),(H012,H002)),(H023,H026))),(H006,(H030, (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,(((H005,H008),H024),((H032,H016),(H031,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,(((H005,H008),H024),((H032,H016),(H031,((H013,(H022,((H029, H034),(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,(((H005,H008),H024),((H032,H016),(H031,((H013,(H022,((H029, H034),(H033,(H010,(((H011,H003),(H014,(H017,H027))),(H018,((H028,H001), (H015,H020))))))))),H019))))))))[0.0100]; (((H030,H006),((H035,H007),((H012,((H021,H009),H002)),(H023,H026)))), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019))))))[0.0100]; ((H030,(H006,((H035,H007),((H012,((H021,H009),H002)),(H023,H026))))), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019))))))[0.0100]; ((H006,(H030,((H035,H007),((H012,((H021,H009),H002)),(H023,H026))))), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019))))))[0.0100]; (((H030,H006),((H035,H007),(((H021,H009),(H012,H002)),(H023,H026)))), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))[0.0100]; (((H030,H006),(H007,(H035,(((H021,H009),(H012,H002)),(H023,H026))))), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))[0.0100]; (((H030,H006),(H035,(H007,(((H021,H009),(H012,H002)),(H023,H026))))), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,((H005,H008),(H024,((H032,H016),(H031,((H013,(H022,(((H033, (H010,(H011,(H003,(H014,(H017,H027)))))),H034),(H029,(H018,(H028,(H001, (H015,H020)))))))),H019))))))))))[0.0100]; altree-v1.3.1/test/phylip/ancestor_absent/association/ancestors0000644000175000017500000000001312043315246025204 0ustar vdanjeanvdanjean1100010001 altree-v1.3.1/test/phylip/ancestor_absent/association/outfile0000644000175000017500000351737412043315246024704 0ustar vdanjeanvdanjean Mixed parsimony algorithm, version 3.69 Wagner parsimony method 100 trees in all found +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +-----6 +----26 ! ! ! ! +--H009 ! ! ! +-16 ! ! ! ! ! +--H012 +-----1 +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H024 ! ! +----------------------------------------------------14 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +----30 ! ! ! +--H008 +--2 +-------------------------------------------------------19 ! ! ! +--H032 ! ! +----24 ! ! +--H016 ! ! +--7 +-----------------------------------------------------H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----------14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--------H005 ! ! +-------------------------------------------------------30 +--2 ! ! +-----H008 ! ! +-19 ! ! ! +--H032 ! ! +-24 ! ! +--H016 +--7 ! +-----------------------------------------------------H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----------14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--------H008 ! ! +-------------------------------------------------------19 +--2 ! ! +-----H005 ! ! +-30 ! ! ! +--H032 ! ! +-24 ! ! +--H016 +--7 ! +-----------------------------------------------------H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----------14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 19 no ..... ..... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! ! ! +--H032 +-19 +-------------------------------------------------------24 ! ! +--H016 ! ! ! ! +-----------------------------------------------------H024 +-----7 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! +----34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +--H035 ! ! ! +-------------22 -10 ! ! ! +--H007 ! ! +-17 ! ! ! +-----------H023 ! ! ! ! ! ! +-----6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +-----H032 ! ! +----------------------------------------------------24 ! ! ! ! +--H021 +-30 ! +-26 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +-----------------------H030 ! ! ! +-------------------------------------------------------------------------27 +--------------------H035 ! ! ! ! -10 ! +-22 +-----------------H007 ! ! ! ! ! ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H009 ! ! +--6 +-16 ! ! ! ! ! +-----H012 +--1 ! ! +-29 ! +--8 ! +--H021 ! ! +-26 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +-------------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 26 yes ....1 ..... 26 H021 yes 0.... ..1.. 26 H002 no ..... ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--------------------H035 ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 -10 ! ! ! ! ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 ! ! ! +-16 +-----1 ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------------------------------------------------------------------------------------H030 ! ! -10 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-27 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +-----------------------------------------------------------------H008 +--2 ! ! ! +--H005 ! ! +----------------------------------------------------------30 +-19 ! +--H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +-----7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 30 no ..... ..... 30 H005 yes ..... ....0 30 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H005 ! ! ! ! +-----------------------------------------------------------H024 +-30 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H005 ! ! ! ! +-----------------------------------------------------------H024 +-30 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H017 +--3 ! +-------------15 ! ! ! ! +--H014 ! ! ! +-33 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! +-21 +-----------------------H011 ! ! ! ! ! ! ! ! +-----H017 +--3 +-31 +-------------15 ! ! ! ! +--H014 ! ! ! +-33 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +--------H011 ! ! +-21 +-------------31 ! ! ! ! ! +-----H017 +--3 ! ! +-15 ! ! ! ! +--H014 ! +--5 +-33 ! ! +--H027 ! ! ! ! +-----------H018 ! +----------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 31 no ..... ..... 31 H011 no ..... ..... 31 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H017 +--3 +-21 +-------------15 ! ! ! ! +--H014 ! ! ! +-33 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +--H014 +--3 +-21 +-33 ! ! +-------------15 +--H017 ! ! ! ! ! +--5 +-----H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! ! ! +--------------------------------------------------------------H024 +-19 ! ! ! +-----H005 ! ! +----------------------------------------------------30 ! ! ! ! +--H032 +-14 ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +--H032 +-14 +-------------------------------------------------------24 ! ! +--H016 ! ! ! ! +-----------------------------------------------------H005 +--7 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----30 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 30 no ..... ..... 30 H005 yes ..... ....0 30 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +-----H012 ! ! +--6 +-29 ! ! ! ! ! +--H021 ! ! ! +-16 +-26 +--1 ! ! ! +--H009 ! +--8 ! ! ! +--------H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +-----------------------H030 ! ! ! +-------------------------------------------------------------------------27 +--------------------H035 ! ! ! ! -10 ! +-22 +-----------------H007 ! ! ! ! ! ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 +--1 ! +-16 ! ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +-------------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H035 ! ! ! +----------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +--------------------------------------------------------------------------H030 ! ! +----------------------27 +-----------------------------------------------------------------------H025 ! ! +-25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +-------------------------------------------------------24 ! ! ! +--H016 +-30 ! ! ! +--H031 ! ! +-------------------------------------------------28 ! ! ! +--H021 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----26 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +-----3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..... ..1.. 26 28 no ..... ..... 28 H031 no ..... ..... 28 H021 yes ..11. ..... 26 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! +-14 +--------------------------------------------------------------H005 ! ! ! ! +--H032 +-30 +-------------------------------------------------------24 ! ! +--H016 ! ! ! ! +-----------------------------------------------------H021 +--7 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----26 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 maybe ...?. ..... 7 24 maybe ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..... ..1.. 26 H021 yes ..11. ..... 26 28 maybe ...0. ..... 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! +-14 +--------------------------------------------------------------H005 ! ! ! ! +--H032 +-30 +-------------------------------------------------------24 ! ! +--H016 ! ! ! ! +-----------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------------H021 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-26 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 26 no ..... ..... 26 H021 yes ..11. ..... 26 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +-----H021 ! ! +----------------------------------------------------26 ! ! ! ! +--H032 +-30 ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 maybe ..... ..?.. 7 26 yes ...1. ..... 26 H021 yes ..1.. ..1.. 26 24 maybe ..... ..0.. 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 maybe ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! +----34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! +--5 +--H027 +--3 ! ! ! +-----------------H003 ! +-------21 ! ! +--------------H011 ! +-31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! +--5 +--H027 +--3 ! ! ! +-----------------H011 ! +-------31 ! ! +--------------H003 ! +-21 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! ! ! +-----H014 ! ! +-31 +----------------33 ! ! ! ! ! +--H017 +--3 ! ! +-15 ! +--5 +--H027 ! ! ! ! +--------------H003 ! +-------21 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H007 ! ! ! ! ! +-------------------------------------------------------------------------17 +-----------------H035 ! ! ! ! ! +-10 ! +-22 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--------H003 ! ! +-12 +----------------21 ! ! ! ! ! +-----H017 ! ! ! ! +-15 ! ! ! ! ! +--H014 +--3 +--5 +-33 ! ! +--H027 ! ! ! ! +--------------H011 ! +----------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! ! ! +--------H003 ! ! +-31 +-------------21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! ! ! ! +--H017 ! +--5 +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +----------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 5 no ..... ..... 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--------H003 ! ! +-12 +----------------21 ! ! ! ! ! +-----H014 ! ! ! ! +-33 ! ! ! ! ! +--H017 +--3 +--5 +-15 ! ! +--H027 ! ! ! ! +--------------H011 ! +----------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H033 +-------28 ! ! ! ! ! +-18 +--------------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +----------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--H011 +--3 ! +----------------31 ! ! ! +--H003 ! ! ! ! +-------21 +--H018 ! ! +----------34 ! ! ! +--H029 ! +----20 ! ! +--------H028 ! +----13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 20 yes ...0. ..... 20 34 no ..... ..... 34 H018 no ..... ..... 34 H029 yes 0.... ..... 20 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H033 +-------28 ! ! ! ! ! +-18 +--------------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +----------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--H011 +--3 ! +----------------31 ! ! ! +--H003 ! +-------21 ! ! +--------------H029 ! +----20 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 20 yes ...0. ..... 20 H029 yes 0.... ..... 20 34 no ..... ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H033 +-------28 ! ! ! ! ! +-18 +--------------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +----------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--H011 +--3 ! +----------------31 ! ! ! +--H003 ! +-------21 ! ! +--------------H018 ! +----34 ! ! +-----------H029 ! +-20 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 20 no ..... ..... 20 H029 yes 0.... ..... 20 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H029 +-------28 ! ! ! ! ! +-20 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! +----34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! ! +----26 ! +-------------------------------------------------------------------------17 ! +--H009 ! ! ! +-16 ! ! ! ! ! +--H012 ! ! ! +--8 +----29 ! ! ! ! ! +--H002 ! ! +-----6 ! +-----1 ! +-----------H023 ! ! ! +--------------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! ! ! +--H027 ! +-----5 ! ! +-----------H018 ! ! ! ! ! ! +--H028 ! +-------34 +-13 ! ! +-11 +--H001 ! ! ! ! ! +--9 +-----H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 9 yes .0... ..... 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! ! +----26 ! +-------------------------------------------------------------------------17 ! +--H009 ! ! ! +-16 ! ! ! ! ! +--H012 ! ! ! +--8 +----29 ! ! ! ! ! +--H002 ! ! +-----6 ! +-----1 ! +-----------H023 ! ! ! +--------------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--------H012 +-10 ! ! ! +-------------------------------------------------------------------------17 +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! ! +--8 ! ! ! ! ! ! +-----H002 ! ! +-----6 ! +--1 ! +-----------H023 ! ! ! +--------------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--------H015 ! ! ! ! +--9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! ! ! ! +-------21 +-----------H018 ! ! ! ! ! ! +--H028 ! +----34 +-13 ! ! +-11 +--H001 ! ! ! ! ! +--9 +-----H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 9 yes .0... ..... 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------25 ! +-----H031 ! ! +----28 ! ! ! ! +--H005 ! ! ! +-30 +--2 +----------------------------------------------------19 +--H008 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------25 ! +-----------H031 ! ! ! ! ! +----------------------------------------------------28 +--H005 ! ! ! ! +----30 +--2 ! ! ! +--H008 ! ! +-19 ! ! ! +--H032 ! ! +----24 ! ! +--H016 ! ! +--7 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------25 ! +--H005 ! ! +-------30 ! ! ! +--H008 ! ! +----------------------------------------------------19 +--2 ! ! +-----H031 ! ! +----28 ! ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H032 ! ! +-------------------------------------------------------------24 +--2 ! +--H016 ! ! ! ! +--H005 ! ! +-30 +--7 +----------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! +----14 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +-----------------------------------------------------------H024 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----14 ! +--H008 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +-19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +--H032 ! +-------------------------------------------------------------24 ! ! +--H016 +--7 ! +-----------------------------------------------------------H024 ! ! +----14 +--------------------------------------------------------H005 ! ! ! ! +-----------------------------------------------------H008 +-30 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +-19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +--H032 ! +-------------------------------------------------------------24 ! ! +--H016 +--7 ! +-----------------------------------------------------------H024 ! ! +----14 +--------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------H005 +-19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +-30 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! +-21 +-----------------------H011 ! ! ! ! ! ! ! ! +-----H014 +--3 +-31 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! ! ! +--------------------------------------------------------------H005 +-19 ! ! ! +-----H031 ! ! +----------------------------------------------------28 ! ! ! ! +--H032 +-30 ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! ! ! +--------------------------------------------------------------H008 +-30 ! ! ! +-----H031 ! ! +----------------------------------------------------28 ! ! ! ! +--H032 +-19 ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +--H011 ! ! ! ! +-------31 ! ! +-12 ! +--H003 ! ! ! +-------------21 ! ! ! ! ! +-----H014 +--3 ! ! +----33 ! ! ! ! +--H017 ! +--5 +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H003 ! ! ! ! +-------------21 ! ! +-12 ! ! +--------H011 ! ! ! ! +-31 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-30 +--2 +----------------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--H032 +-14 +----------------------------------------------------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--------7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H001 ! +-11 ! ! +-----H028 ! +-13 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------------------------------------------------------------------------------------H030 ! ! -10 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-27 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +--1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +--1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------------28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H029 +-------------28 ! ! ! ! ! +-20 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +--H032 ! ! +-------------------------------------------------------------24 +--2 ! +--H016 ! ! ! ! +--H005 ! ! +-30 +--7 +----------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! +----14 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--H021 +-------------------------------------------------------------------------------17 +----26 ! ! ! +--H009 ! ! +----16 ! ! ! ! +--H012 ! ! ! +----29 ! +-----8 +--H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +-----H012 +-------------------------------------------------------------------------------17 +-29 ! ! ! ! +--H021 ! ! +----16 +-26 ! ! ! ! +--H009 ! ! ! ! ! +-----8 +--------H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--H021 +-------------------------------------------------------------------------------17 +----26 ! ! ! +--H009 ! ! +----16 ! ! ! ! +--H012 ! ! ! +----29 ! +-----8 +--H002 --1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------------H030 ! ! +----------------------27 +--------------------------------------------------------------------------H006 ! ! +-10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +-25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--H021 +-------------------------------------------------------------------------------17 +----26 ! ! ! +--H009 ! ! +----16 ! ! ! ! +--H012 ! ! ! +----29 ! +-----8 +--H002 --1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------------H006 ! ! +----------------------10 +--------------------------------------------------------------------------H030 ! ! +-27 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +-25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-30 +--2 +----------------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--H032 +-14 +----------------------------------------------------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--------7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-30 +--2 +----------------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--H032 +-14 +----------------------------------------------------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--------7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-30 +--2 +----------------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--H032 +-14 +----------------------------------------------------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--------7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H029 ! ! ! +-32 +----------------------------------20 ! ! ! ! ! +--H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +----18 ! ! ! ! ! +--H011 ! ! ! ! +-------31 ! ! +-12 ! +--H003 ! ! ! +-------------21 ! ! ! ! ! +-----H014 +--3 ! ! +----33 ! ! ! ! +--H017 ! +--5 +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +----------------------27 ! +--H006 ! ! +--H035 +-------------------------------------------------------------------------10 +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--------H012 ! +----17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! --1 ! +-----H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------------25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------H030 ! +-------------------------------------------------------------------------27 +-----------------------H006 ! ! ! ! ! ! +--H035 ! +-10 +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--------H012 ! +-17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 --1 +-----8 ! ! ! +-----H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------------25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------H006 ! +-------------------------------------------------------------------------10 +-----------------------H030 ! ! ! ! ! ! +--H035 ! +-27 +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--------H012 ! +-17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 --1 +-----8 ! ! ! +-----H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------------25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +----------------------27 ! +--H006 ! ! +--H035 +-------------------------------------------------------------------------10 +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--H021 ! +----17 +----26 ! ! ! +--H009 ! ! +----16 ! ! ! ! +--H012 ! ! ! +----29 --1 +-----8 +--H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------------25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +----------------------27 ! +--H006 ! +-------------------------------------------------------------------------10 +--------------------H007 ! ! ! ! ! ! +-----------------H035 ! +----17 ! ! ! ! +--H021 ! ! ! +----26 ! +-22 ! +--H009 ! ! +----16 ! ! ! ! +--H012 --1 ! ! +----29 ! +--8 +--H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------------25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +----------------------27 ! +--H006 ! +-------------------------------------------------------------------------10 +--------------------H035 ! ! ! ! ! ! +-----------------H007 ! +----22 ! ! ! ! +--H021 ! ! ! +----26 ! +-17 ! +--H009 ! ! +----16 ! ! ! ! +--H012 --1 ! ! +----29 ! +--8 +--H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------------25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! ! +-----------------------------------------H022 ! ! ! ! ! ! +-23 ! +-----------------H033 ! ! ! ! ! +-18 ! ! ! ! ! ! ! +--------------H010 ! ! ! ! ! ! +-12 +----28 ! ! ! ! ! +-----------H011 ! ! +-32 ! +-31 ! ! ! ! ! +--------H003 ! ! ! +-----------------5 +-21 ! ! ! ! ! ! +-----H014 ! ! ! ! ! +-33 ! ! ! ! ! ! +--H017 ! ! ! ! ! +-15 ! ! +--4 ! +--H027 ! ! ! ! +--3 ! +--------------------H034 ! ! ! ! +--------------H029 ! +----------------------20 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 34 yes 1.... ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... altree-v1.3.1/test/phylip/outgroup_absent/0000755000175000017500000000000012252703410021014 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/phylip/outgroup_absent/association/0000755000175000017500000000000012252703410023330 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/phylip/outgroup_absent/association/trio.phy0000644000175000017500000000144412043315246025036 0ustar vdanjeanvdanjean 36 10 H019 0100101111 H026 0111010001 H004 0100110001 H020 1000011110 H034 0100011110 H027 1111001110 H023 1111010001 H016 0101100001 H002 1111100001 H015 1000011101 H006 1000010001 H001 1000011111 H010 1101011110 H028 1000011011 H024 0100100011 H017 1111011111 H009 1111000101 H007 1101010001 H033 0101011110 H008 0100100001 H029 0100011111 H003 1101111111 H035 1101010000 H013 0100101110 H032 0101101001 H025 0100010001 H021 0111100101 H030 1100010011 H031 0100100101 H012 1111000001 H005 0100100000 H011 1101011111 H022 0100111110 H014 0111011111 H018 1100011111 OUTG 1100010001 altree-v1.3.1/test/phylip/outgroup_absent/association/nb_cas_controls.txt0000644000175000017500000000101512043315246027242 0ustar vdanjeanvdanjeanH019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 altree-v1.3.1/test/phylip/outgroup_absent/association/run_altree0000755000175000017500000000076312043315246025430 0ustar vdanjeanvdanjean#!/bin/sh -x # To run phylip # Options "5" and option "o - 36" (the 36th sequence is the outgroup) phylip mix #To perform the association test. # The outgroup is removed from the analysis (option # --remove-outgroup). The name of the outgroup must be specified so that # the program can identify the outgroup sequence altree -i outfile -j nb_cas_controls.txt --data-qual qualitative \ -a -t SNP -p phylip --outgroup OUTG --remove-outgroup -r 1 \ --tree-to-analyse 1 -o 1_trio_phy.asso altree-v1.3.1/test/phylip/outgroup_absent/association/1_trio_phy.asso0000644000175000017500000002211312043315246026277 0ustar vdanjeanvdanjean /----* H030 (LEVEL: 1) case/control:1/1 | Site: 9 Sens: 0-->1 |----* H006 (LEVEL: 1) case/control:23/19 | Site: 2 Sens: 1-->0 -----* 35+(10+(27)) (LEVEL: 0) case/control:200/200 | | [0] ddl=2 chi2=0.43 p_value_chi2=0.801 | [1] ddl=4 chi2=3.49 p_value_chi2=0.539 | [2] ddl=6 chi2=7.31 p_value_chi2=0.24 | [3] ddl=8 chi2=9.87 p_value_chi2=0.241 | [4] ddl=9 chi2=12.35 p_value_chi2=0.17 | [5] ddl=10 chi2=18.26 p_value_chi2=0.037 | [6] ddl=12 chi2=19.27 p_value_chi2=0.04 | [7] ddl=16 chi2=27.25 p_value_chi2=0.015 | [8] ddl=18 chi2=31.34 p_value_chi2=0.009 | [9] ddl=19 chi2=31.42 p_value_chi2=0.016 | [10] ddl=20 chi2=39.94 p_value_chi2=0.002 | [11] ddl=21 chi2=50.63 p_value_chi2=0 | [12] ddl=23 chi2=52.79 p_value_chi2=0 | [13] ddl=25 chi2=53.21 p_value_chi2=0 | [14] ddl=27 chi2=54.70 p_value_chi2=0 | [15] ddl=32 chi2=66.05 p_value_chi2=0 | [16] ddl=34 chi2=68.34 p_value_chi2=0 | /----* H035 (LEVEL: 2) case/control:1/0 | | Site: 10 Sens: 1-->0 | |----* H007 (LEVEL: 2) case/control:25/36 \----* 17+(22) (LEVEL: 1) case/control:176/180 | Site: 4 Sens: 0-->1 | /----* H023 (LEVEL: 3) case/control:1/5 | |----* H026 (LEVEL: 3) case/control:1/0 | | Site: 1 Sens: 1-->0 \----* 1+(6) (LEVEL: 2) case/control:150/144 | Site: 3 Sens: 0-->1 | /----* H012 (LEVEL: 4) case/control:1/2 | |----* H009 (LEVEL: 4) case/control:5/10 | | Site: 8 Sens: 0-->1 \----* 16+(29) (LEVEL: 3) case/control:148/139 | Site: 6 Sens: 1-->0 | /----* H002 (LEVEL: 5) case/control:9/3 \----* 8 (LEVEL: 4) case/control:142/127 | Site: 5 Sens: 0-->1 | /----* H021 (LEVEL: 6) case/control:11/2 | | Site: 8 Sens: 0-->1 \----* 26 (LEVEL: 5) case/control:133/124 | Site: 1 Sens: 1-->0 | /----* H032 (LEVEL: 7) case/control:0/1 | | Site: 7 Sens: 0-->1 | |----* H016 (LEVEL: 7) case/control:2/2 \----* 7+(24) (LEVEL: 6) case/control:122/122 | Site: 3 Sens: 1-->0 | /----* H025 (LEVEL: 9) case/control:2/3 | | Site: 5 Sens: 1-->0 | /----* 25 (LEVEL: 8) case/control:13/5 | | | Site: 6 Sens: 0-->1 | | \----* H004 (LEVEL: 9) case/control:11/2 | |----* H008 (LEVEL: 8) case/control:28/19 | |----* H005 (LEVEL: 8) case/control:2/2 | | Site: 10 Sens: 1-->0 \----* 2+(19+(28+(30))) (LEVEL: 7) case/control:120/119 | Site: 4 Sens: 1-->0 |----* H031 (LEVEL: 8) case/control:1/0 | Site: 8 Sens: 0-->1 | /----* H024 (LEVEL: 9) case/control:1/0 \----* 14 (LEVEL: 8) case/control:76/93 | Site: 9 Sens: 0-->1 | /----* H013 (LEVEL: 11) case/control:15/5 | /----* 23 (LEVEL: 10) case/control:72/90 | | | Site: 10 Sens: 1-->0 | | | /----* H022 (LEVEL: 12) case/control:9/1 | | \----* 32 (LEVEL: 11) case/control:57/85 | | | Site: 6 Sens: 0-->1 | | | /----* H033 (LEVEL: 14) case/control:0/1 | | | /----* 18 (LEVEL: 13) case/control:1/4 | | | | | Site: 4 Sens: 0-->1 | | | | \----* H010 (LEVEL: 14) case/control:1/3 | | | | Site: 1 Sens: 0-->1 | | | |----* H034 (LEVEL: 13) case/control:1/0 | | \----* 4+(12) (LEVEL: 12) case/control:48/84 | | | Site: 5 Sens: 1-->0 | | | /----* H029 (LEVEL: 14) case/control:1/3 | | \----* 20 (LEVEL: 13) case/control:46/80 | | | Site: 10 Sens: 0-->1 | | | /----* H018 (LEVEL: 15) case/control:2/2 | | | | /----* H011 (LEVEL: 16) case/control:3/8 | | | | |----* H003 (LEVEL: 16) case/control:2/0 | | | | | Site: 5 Sens: 0-->1 | | | |----* 21+(31) (LEVEL: 15) case/control:8/21 | | | | | Site: 4 Sens: 0-->1 | | | | | /----* H014 (LEVEL: 17) case/control:2/3 | | | | | | Site: 1 Sens: 1-->0 | | | | | |----* H017 (LEVEL: 17) case/control:0/8 | | | | \----* 15+(33) (LEVEL: 16) case/control:3/13 | | | | | Site: 3 Sens: 0-->1 | | | | \----* H027 (LEVEL: 17) case/control:1/2 | | | | Site: 6 Sens: 1-->0 | | | | Site: 10 Sens: 1-->0 | | \----* 5+(34) (LEVEL: 14) case/control:45/77 | | | Site: 1 Sens: 0-->1 | | | /----* H001 (LEVEL: 16) case/control:24/39 | | | |----* H015 (LEVEL: 16) case/control:2/6 | | | | Site: 9 Sens: 1-->0 | | \----* 9+(11)+(13) (LEVEL: 15) case/control:35/54 | | | Site: 2 Sens: 1-->0 | | |----* H028 (LEVEL: 16) case/control:4/0 | | | Site: 8 Sens: 1-->0 | | \----* H020 (LEVEL: 16) case/control:5/9 | | Site: 10 Sens: 1-->0 \----* 3 (LEVEL: 9) case/control:75/93 | Site: 8 Sens: 0-->1 | Site: 7 Sens: 0-->1 \----* H019 (LEVEL: 10) case/control:3/3 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0.5 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0.5 level 4 p-value (non corrected) 0.5 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 level 10 p-value (non corrected) 0 level 11 p-value (non corrected) 0 level 12 p-value (non corrected) 0 level 13 p-value (non corrected) 0 level 14 p-value (non corrected) 0 level 15 p-value (non corrected) 0 level 16 p-value (non corrected) 0 level 17 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 altree-v1.3.1/test/phylip/outgroup_absent/association/outtree0000644000175000017500000006313012043315246024751 0ustar vdanjeanvdanjean(OUTG,((H030,H006),((H035,H007),((H023,H026),((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H023,(H026,((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,H031),((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H031,(H005,((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H005,(H031,((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H008,(H025,H004)),((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(((H005,H031),(H008,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H005,H031),((H025,H004),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H025,H004),((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,(((H005,H031),(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H031,(H005,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H005,(H031,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H032,(H016,((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,H003),((H033,H010),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, 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((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,H010),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H028,(H001,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,H010),(H029,((H018,((H011,H003),(H014,(H017,H027)))), ((H028,(H001,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), (H028,(H001,(H015,H020)))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H001,(H015,(H028,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H001,((H028,H015),H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H028,H001),(H015,H020)))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H028,H001),(H015,H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H001,(H028,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,(H008,((H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))),((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H008,(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))),((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,(((H032,H016),(H021,(H002, (H009,(H012,(H023,H026)))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,(H030,((H035,H007),(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H030,(H035,H007)),(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H031,(H005,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H012,(H009,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,(H031,((H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))),((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H008),(H024,(H031,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H008),(H031,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(H031,((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H031,(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026)))))))),((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H031,(H005,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H011,(H003,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(H008,((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H012,(H009,(H023,H026))))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,(((H030,H006),(H025,H004)),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,(H006,(H025,H004))),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H006,(H030,(H025,H004))),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H025,H004),((H030,H006),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H025,H004),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; altree-v1.3.1/test/phylip/outgroup_absent/association/outfile0000644000175000017500000366537612043315246024760 0ustar vdanjeanvdanjean Mixed parsimony algorithm, version 3.69 Wagner parsimony method 100 trees in all found +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +--H023 ! +--------------------------------------------------------------------------------------6 ! ! +--H026 ! ! +-----1 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +----16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H023 ! ! +-----6 +--------------------------------------------------------------------------------------H026 ! ! +--1 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 1 no ..... ..... 1 H026 yes 0.... ..... 1 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! +-24 +-----------------------------------------------------------------H031 ! ! ! ! +--------------------------------------------------------------H005 +-28 ! ! ! +-----H008 ! ! +----------------------------------------------------19 ! ! ! ! +--H025 +-30 ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! +-24 +-----------------------------------------------------------------H005 ! ! ! ! +--------------------------------------------------------------H031 +-30 ! ! ! +-----H008 ! ! +----------------------------------------------------19 ! ! ! ! +--H025 +-28 ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 30 yes ...0. ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----H008 ! ! +----------------------------------------------------------19 +-24 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--H005 +--2 +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +--H005 ! ! +-------30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-24 ! ! +-----H008 ! ! +----19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--H025 ! ! +----------------------------------------------------25 +-28 ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-----2 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--H025 ! ! +----------------------------------------------------------25 +-19 ! +--H004 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +--2 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----------------------------------------------------------------H008 ! ! ! +-24 ! +--H005 ! ! +----30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H025 ! ! +----25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--------H031 ! ! +----------------------------------------------------28 ! ! ! ! +-----H005 +-19 ! +-30 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--------H005 ! ! +----------------------------------------------------30 ! ! ! ! +-----H031 +-19 ! +-28 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +--H025 +-24 +-------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H032 ! ! +-24 +--------------------------------------------------------------------H016 ! ! ! ! +--H025 +--7 +-------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 24 yes ..0.. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! +----------34 +-------------31 ! ! +-20 ! ! ! +--H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H033 ! ! ! ! ! +-------18 ! ! ! ! ! ! +--H010 +--3 ! ! +----12 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H033 ! ! ! ! ! +-------18 ! ! ! ! ! ! +--H010 +--3 ! ! +-12 ! +--5 ! +--H014 ! ! ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! ! +----------34 +-------------18 ! ! +-20 ! ! ! +--H010 ! ! ! ! ! ! ! ! ! ! +-12 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +----21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--H033 ! ! ! ! ! +----------18 ! ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! ! +--------H003 +--3 ! ! ! ! ! +--5 +----21 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 12 no ..... ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! ! +----31 ! ! +-20 +----------34 ! +--H003 ! ! ! ! ! +-------21 ! ! ! ! ! ! ! +--H033 ! ! ! ! ! ! +----18 ! ! ! ! +-12 +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H003 ! ! ! ! +----------34 +-------21 ! ! +-20 ! ! ! ! +-----H011 ! ! ! ! ! ! +-31 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! ! ! +-----H003 ! ! ! ! +-31 +-------21 ! ! ! ! ! ! ! +--H033 ! ! ! ! ! ! +-18 ! ! ! ! +-12 +--H010 +--3 ! ! ! ! +--5 ! +--H014 ! ! ! +-33 ! ! +-------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 12 no ..... ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +-----H003 ! ! ! ! +----------34 +----------21 ! ! +-20 ! ! ! ! +--H033 ! ! ! ! ! ! +-18 ! ! ! ! +-12 +--H010 ! ! ! ! ! ! ! ! ! ! +--------H011 +--3 ! ! ! ! ! ! ! +-------31 +--H014 ! +--5 ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H012 ! ! +-29 +--------------------------------------------------------------------------------H009 ! ! +-16 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +-----------H033 ! ! ! ! ! ! ! ! ! ! +-18 +--------H010 +--3 ! ! ! ! ! +--5 +-12 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 yes ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +-----------H010 ! ! ! ! ! ! ! ! ! ! +-12 +--------H033 +--3 ! ! ! ! ! +--5 +-18 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 15 yes ..1.. ..... 15 33 yes ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! +----------34 +-------------31 ! ! +-20 ! ! ! +--H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H014 ! ! ! ! ! +-------33 ! ! ! ! ! ! +--H017 +--3 ! ! +----15 ! ! ! ! +--H033 ! +--5 ! +-18 ! ! +----12 +--H010 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----H008 ! ! +----------------------------------------------------------19 +-24 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--H005 +--2 +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +----14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +--H005 ! ! +-------30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-24 ! ! +-----H008 ! ! +----19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H031 ! ! +----------------------------------------------------28 ! ! ! ! +--------H005 ! ! ! +-30 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-------14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-------------14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! +----------------13 ! ! +-----H015 ! +--9 ! ! +--H001 ! +-11 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H015 ! +--------------9 ! ! +-----H001 ! +-11 ! ! +--H028 ! +-13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-22 ! +----------------------------------------------------------------------------------------------17 +--H007 ! ! ! ! ! +-----H006 +-10 ! +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-------27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +-----------------------------------------------------------------------------------------------------H006 ! ! ! ! +--H035 +-10 +----------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H015 ! +--------------9 ! ! +-----H028 ! +-13 ! ! +--H001 ! +-11 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 ! +----22 -35 ! +--H007 ! +-------------------------------------------------------------------------------------------17 ! ! ! +--H030 ! ! +----27 ! ! +--H006 +-10 ! +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----------25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 ! ! ! +--H023 +--1 +-----6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-------------------------------------------------------------------------------30 ! ! ! +--H031 +--2 ! ! ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------7 +-28 ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +-----1 ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 1 no ..... ..... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! ! ! +--H035 +-10 +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----17 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! ! ! ! +--H005 +----25 ! +----------------------30 ! ! ! +--H031 ! ! ! ! ! +-------------------------------------------------------28 +--H032 ! ! ! ! +----------------24 +--2 ! ! ! +--H016 ! ! +-----7 ! ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 +--1 ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------------19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 +--2 ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! ! ! ! +----------------13 +--H001 ! ! +-11 ! +--9 +--H015 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +--------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H001 ! ! +-11 ! ! ! ! +--H028 ! +--------------9 +-13 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----H033 +-14 ! ! ! +----------------------------18 ! ! +--4 ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! ! ! ! ! +--5 +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 +--3 +-------20 ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! ! ! +----33 ! +-15 +--H017 ! ! ! ! +--H028 ! ! +-13 ! ! +-11 +--H001 ! ! ! ! ! +--------------9 +-----H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H032 ! ! ! ! ! +-------------------------------------------------------------24 +-----------------H016 ! ! ! ! ! +--2 ! +--7 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +-----H017 ! ! ! +----15 ! +--5 ! +--H014 ! ! +-33 ! ! +--H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +-----H014 ! ! ! +----33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! +----------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H001 ! +-------------11 ! ! +-----H015 ! +--9 ! ! +--H028 ! +-13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H001 ! ! ! ! +-------------11 +--H028 ! ! +-13 ! +--9 +--H015 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H028 ! ! +----13 ! ! ! +--H001 ! +-------------11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H028 ! ! +----13 ! ! ! +--H001 ! +-------------11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H001 ! +-------------11 ! ! +-----H028 ! +-13 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! +-10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +-25 ! ! ! +-----------------------------------------------------------------------------------H008 ! ! ! +--2 ! +--------------------H016 ! ! +-----------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +-19 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 1 no ..... ..... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +-----------------------H008 ! ! +----------------------------------------------------------19 ! ! ! ! +--------------------H016 ! ! ! +--7 ! ! ! ! +-----------------H032 +--2 ! +-24 ! ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------------------------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 19 no ..... ..... 19 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! +----26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 ! ! ! +--H023 +--1 +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +-----------------------------------------------------------------------------------------------------H030 ! ! ! ! +--H035 +-27 +----------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +-----H030 -35 +----------------------------------------------------------------------------------------------27 ! ! ! +--H035 ! ! +-22 ! ! +--H007 +-17 ! +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-------10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H031 ! +----------------------------------------------------28 ! ! ! +--H005 ! ! +-30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H012 ! ! +-29 ! ! ! +-----H009 ! ! +-16 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! +-27 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +-25 ! ! ! +-----------------------------------------------------------------------------------H031 ! ! ! +--2 ! +--------------------H032 ! ! +----------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +-28 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 1 no ..... ..... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----------------------19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-28 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H031 +----------------------19 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 28 maybe ..... ..?.. 28 H031 maybe ..... ..1.. 28 14 yes ..... ...1. 14 H024 maybe ..... ..0.. 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 +--1 ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------------H031 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------28 ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +-----------------------H031 ! ! +----------------------------------------------------------28 ! ! ! ! +--------------------H032 ! ! ! +-24 ! ! ! ! +-----------------H016 +--2 ! +--7 ! ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------------------------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H031 ! +----------------------------------------------------28 ! ! ! +--H005 ! ! +-30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H011 +--3 ! ! +-31 ! ! ! ! +-----H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 +--1 ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H012 ! ! +-29 ! ! ! +-----H009 +--1 +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 ! +----27 -35 ! +--H006 ! +-------------------------------------------------------------------------------------------10 ! ! ! +--H025 ! ! +----25 ! ! +--H004 +--2 ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--------H030 ! +-------------------------------------------------------------------------------------------27 -35 ! ! +-----H006 ! ! +-10 ! ! ! +--H025 ! ! +-25 +--2 +--H004 ! ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--------H006 ! +-------------------------------------------------------------------------------------------10 -35 ! ! +-----H030 ! ! +-27 ! ! ! +--H025 ! ! +-25 +--2 +--H004 ! ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H025 -35 +-------------------------------------------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H025 ! +-------------------------------------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 2 no ..... ..... 2 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... altree-v1.3.1/test/phylip/outgroup_present/0000755000175000017500000000000012252703410021220 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/phylip/outgroup_present/association/0000755000175000017500000000000012252703410023534 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/phylip/outgroup_present/association/trio.phy0000644000175000017500000000144412043315246025242 0ustar vdanjeanvdanjean 36 10 H019 0100101111 H026 0111010001 H004 0100110001 H020 1000011110 H034 0100011110 H027 1111001110 H023 1111010001 H016 0101100001 H002 1111100001 H015 1000011101 H006 1000010001 H001 1000011111 H010 1101011110 H028 1000011011 H024 0100100011 H017 1111011111 H009 1111000101 H007 1101010001 H033 0101011110 H008 0100100001 H029 0100011111 H003 1101111111 H035 1101010000 H013 0100101110 H032 0101101001 H025 0100010001 H021 0111100101 H030 1100010011 H031 0100100101 H012 1111000001 H005 0100100000 H011 1101011111 H022 0100111110 H014 0111011111 H018 1100011111 OUTG 1100010001 altree-v1.3.1/test/phylip/outgroup_present/association/nb_cas_controls.txt0000644000175000017500000000104312043315246027447 0ustar vdanjeanvdanjeanH019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 OUTG m004 c004 altree-v1.3.1/test/phylip/outgroup_present/association/run_altree0000755000175000017500000000062612043315246025632 0ustar vdanjeanvdanjean#!/bin/sh -x # To run phylip # options "5" and "o - 36" are selected (the outgroup is the 36th # sequence) phylip mix # To perform the association test # The outgroup is not removed, so it is not necessary to specify its # name. # Analysis on the first tree only altree -i outfile -j nb_cas_controls.txt \ -a -t SNP -p phylip -r 1 --data-qual qualitative \ --tree-to-analyse 1 -o 1_trio_phy.asso altree-v1.3.1/test/phylip/outgroup_present/association/1_trio_phy.asso0000644000175000017500000002216412043315246026511 0ustar vdanjeanvdanjean /----* OUTG (LEVEL: 1) case/control:4/4 |----* H030 (LEVEL: 1) case/control:1/1 | Site: 9 Sens: 0-->1 -----* 35+(10+(27)) (LEVEL: 0) case/control:204/204 | | [0] ddl=3 chi2=0.43 p_value_chi2=0.948 | [1] ddl=5 chi2=3.49 p_value_chi2=0.696 | [2] ddl=7 chi2=7.31 p_value_chi2=0.38 | [3] ddl=9 chi2=9.87 p_value_chi2=0.343 | [4] ddl=10 chi2=12.35 p_value_chi2=0.209 | [5] ddl=11 chi2=18.26 p_value_chi2=0.04 | [6] ddl=13 chi2=19.27 p_value_chi2=0.058 | [7] ddl=17 chi2=27.25 p_value_chi2=0.025 | [8] ddl=19 chi2=31.34 p_value_chi2=0.016 | [9] ddl=20 chi2=31.42 p_value_chi2=0.021 | [10] ddl=21 chi2=39.94 p_value_chi2=0.001 | [11] ddl=22 chi2=50.63 p_value_chi2=0 | [12] ddl=24 chi2=52.79 p_value_chi2=0 | [13] ddl=26 chi2=53.21 p_value_chi2=0 | [14] ddl=28 chi2=54.70 p_value_chi2=0.001 | [15] ddl=33 chi2=66.05 p_value_chi2=0 | [16] ddl=35 chi2=68.34 p_value_chi2=0 |----* H006 (LEVEL: 1) case/control:23/19 | Site: 2 Sens: 1-->0 | /----* H035 (LEVEL: 2) case/control:1/0 | | Site: 10 Sens: 1-->0 | |----* H007 (LEVEL: 2) case/control:25/36 \----* 17+(22) (LEVEL: 1) case/control:176/180 | Site: 4 Sens: 0-->1 | /----* H023 (LEVEL: 3) case/control:1/5 | |----* H026 (LEVEL: 3) case/control:1/0 | | Site: 1 Sens: 1-->0 \----* 1+(6) (LEVEL: 2) case/control:150/144 | Site: 3 Sens: 0-->1 | /----* H012 (LEVEL: 4) case/control:1/2 | |----* H009 (LEVEL: 4) case/control:5/10 | | Site: 8 Sens: 0-->1 \----* 16+(29) (LEVEL: 3) case/control:148/139 | Site: 6 Sens: 1-->0 | /----* H002 (LEVEL: 5) case/control:9/3 \----* 8 (LEVEL: 4) case/control:142/127 | Site: 5 Sens: 0-->1 | /----* H021 (LEVEL: 6) case/control:11/2 | | Site: 8 Sens: 0-->1 \----* 26 (LEVEL: 5) case/control:133/124 | Site: 1 Sens: 1-->0 | /----* H032 (LEVEL: 7) case/control:0/1 | | Site: 7 Sens: 0-->1 | |----* H016 (LEVEL: 7) case/control:2/2 \----* 7+(24) (LEVEL: 6) case/control:122/122 | Site: 3 Sens: 1-->0 | /----* H025 (LEVEL: 9) case/control:2/3 | | Site: 5 Sens: 1-->0 | /----* 25 (LEVEL: 8) case/control:13/5 | | | Site: 6 Sens: 0-->1 | | \----* H004 (LEVEL: 9) case/control:11/2 | |----* H008 (LEVEL: 8) case/control:28/19 | |----* H005 (LEVEL: 8) case/control:2/2 | | Site: 10 Sens: 1-->0 \----* 2+(19+(28+(30))) (LEVEL: 7) case/control:120/119 | Site: 4 Sens: 1-->0 |----* H031 (LEVEL: 8) case/control:1/0 | Site: 8 Sens: 0-->1 | /----* H024 (LEVEL: 9) case/control:1/0 \----* 14 (LEVEL: 8) case/control:76/93 | Site: 9 Sens: 0-->1 | /----* H013 (LEVEL: 11) case/control:15/5 | /----* 23 (LEVEL: 10) case/control:72/90 | | | Site: 10 Sens: 1-->0 | | | /----* H022 (LEVEL: 12) case/control:9/1 | | \----* 32 (LEVEL: 11) case/control:57/85 | | | Site: 6 Sens: 0-->1 | | | /----* H033 (LEVEL: 14) case/control:0/1 | | | /----* 18 (LEVEL: 13) case/control:1/4 | | | | | Site: 4 Sens: 0-->1 | | | | \----* H010 (LEVEL: 14) case/control:1/3 | | | | Site: 1 Sens: 0-->1 | | | |----* H034 (LEVEL: 13) case/control:1/0 | | \----* 4+(12) (LEVEL: 12) case/control:48/84 | | | Site: 5 Sens: 1-->0 | | | /----* H029 (LEVEL: 14) case/control:1/3 | | \----* 20 (LEVEL: 13) case/control:46/80 | | | Site: 10 Sens: 0-->1 | | | /----* H018 (LEVEL: 15) case/control:2/2 | | | | /----* H011 (LEVEL: 16) case/control:3/8 | | | | |----* H003 (LEVEL: 16) case/control:2/0 | | | | | Site: 5 Sens: 0-->1 | | | |----* 21+(31) (LEVEL: 15) case/control:8/21 | | | | | Site: 4 Sens: 0-->1 | | | | | /----* H014 (LEVEL: 17) case/control:2/3 | | | | | | Site: 1 Sens: 1-->0 | | | | | |----* H017 (LEVEL: 17) case/control:0/8 | | | | \----* 15+(33) (LEVEL: 16) case/control:3/13 | | | | | Site: 3 Sens: 0-->1 | | | | \----* H027 (LEVEL: 17) case/control:1/2 | | | | Site: 6 Sens: 1-->0 | | | | Site: 10 Sens: 1-->0 | | \----* 5+(34) (LEVEL: 14) case/control:45/77 | | | Site: 1 Sens: 0-->1 | | | /----* H001 (LEVEL: 16) case/control:24/39 | | | |----* H015 (LEVEL: 16) case/control:2/6 | | | | Site: 9 Sens: 1-->0 | | \----* 9+(11)+(13) (LEVEL: 15) case/control:35/54 | | | Site: 2 Sens: 1-->0 | | |----* H028 (LEVEL: 16) case/control:4/0 | | | Site: 8 Sens: 1-->0 | | \----* H020 (LEVEL: 16) case/control:5/9 | | Site: 10 Sens: 1-->0 \----* 3 (LEVEL: 9) case/control:75/93 | Site: 8 Sens: 0-->1 | Site: 7 Sens: 0-->1 \----* H019 (LEVEL: 10) case/control:3/3 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 level 10 p-value (non corrected) 0 level 11 p-value (non corrected) 0 level 12 p-value (non corrected) 0 level 13 p-value (non corrected) 0 level 14 p-value (non corrected) 0 level 15 p-value (non corrected) 0 level 16 p-value (non corrected) 0 level 17 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 altree-v1.3.1/test/phylip/outgroup_present/association/outtree0000644000175000017500000006313012043315246025155 0ustar vdanjeanvdanjean(OUTG,((H030,H006),((H035,H007),((H023,H026),((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H023,(H026,((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,H031),((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H031,(H005,((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H005,(H031,((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H008,(H025,H004)),((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(((H005,H031),(H008,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H005,H031),((H025,H004),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H025,H004),((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,(((H005,H031),(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H031,(H005,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H005,(H031,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H032,(H016,((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,H003),((H033,H010),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,(H003,((H033,H010),((H014,H017),H027))))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H033,H010),((H011,H003),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,((H033,H010),(H003,((H014,H017),H027))))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(((H011,H003),(H033,H010)),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H003,(H011,(H033,H010))),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,(H003,(H033,H010))),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,((H003,(H033,H010)),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H003,(H033,H010)),(H011,((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,(H003,(H033,H010))),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H012,(H009,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,(H003,(H033,H010))),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,(H003,(H033,(H010,((H014,H017),H027)))))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,(H003,(H010,(H033,((H014,H017),H027)))))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,H031),((H008,(H025,H004)),(H024,((H013,(H022,((H033, H010),(H034,(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020)))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H008,(H025,H004)),((H005,H031),(H024,((H013,(H022,((H033, H010),(H034,(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020)))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(((H005,H031),(H008,(H025,H004))),(H024,((H013,(H022,((H033, H010),(H034,(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020)))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H031,(H005,(H008,(H025,H004)))),(H024,((H013,(H022,((H033, H010),(H034,(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020)))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,((H033, H010),(H034,(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020)))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,H031),((H008,(H025,H004)),(H024,((H013,(H022,(H034, ((H033,H010),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020)))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, ((H033,H010),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020)))))))),H019)))))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), (H028,(H015,(H001,H020)))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H015,(H001,(H028,H020))))))))),H019)))))))))))[0.0100]; (OUTG,(((H035,H007),H006),(H030,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H015,((H028,H001),H020)))))))),H019))))))))))[0.0100]; (OUTG,(H006,((H035,H007),(H030,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H015,((H028,H001),H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H015,((H028,H001),H020)))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H015,((H028,H001),H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H015,((H028,H001),H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H015,(H028,(H001,H020))))))))),H019)))))))))))[0.0100]; (OUTG,(((H035,H007),(H030,H006)),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H001,H015),(H028,H020))))))),H019)))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),(((H005,H031),H008),(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H001,H015),(H028,H020))))))),H019)))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H025,(H004,((H005,H031),(((H032,H016), (H021,(H002,((H012,H009),(H023,H026))))),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H001,H015),(H028,H020))))))),H019))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H025,(H004,(((H005,H031),((H032,H016), (H021,(H002,((H012,H009),(H023,H026)))))),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H001,H015),(H028,H020))))))),H019)))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),(H008,((H005,H031),(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H001,H015),(H028,H020))))))),H019))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H001,H015),(H028,H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H001,H015),(H028,H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), (H028,((H001,H015),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H028,(H001,H015)),H020)))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H001,H015),(H028,H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H001,(H028,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (((H028,H001),H015),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H028,(H001,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H032,(H016,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H028,(H001,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H028,(H001,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, ((H033,H010),(H034,(H029,((H018,((H011,H003),((H014,H017),H027))), ((H028,(H001,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,H010),(H029,((H018,((H011,H003),(H017,(H014,H027)))), ((H028,(H001,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,H010),(H029,((H018,((H011,H003),((H014,H017),H027))), ((H028,(H001,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,H010),(H029,((H018,((H011,H003),(H014,(H017,H027)))), ((H028,(H001,H015)),H020))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,(((H032,H016),(H021,(H002, ((H012,H009),(H023,H026))))),((H005,H031),(H008,(H024,((H013,(H022, (((H033,H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))), (H028,(H001,(H015,H020)))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H001,(H015,(H028,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H001,((H028,H015),H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H028,H001),(H015,H020)))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H028,H001),(H015,H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H001,(H028,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,(H008,((H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))),((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H008,(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))),((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,(((H032,H016),(H021,(H002, (H009,(H012,(H023,H026)))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,(H030,((H035,H007),(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H030,(H035,H007)),(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H031,(H005,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H012,(H009,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,(H031,((H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))),((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H008),(H024,(H031,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H008),(H031,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(H031,((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H031,(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026)))))))),((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H031,(H005,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H011,(H003,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(H008,((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H012,(H009,(H023,H026))))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,(((H030,H006),(H025,H004)),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,(H006,(H025,H004))),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H006,(H030,(H025,H004))),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H025,H004),((H030,H006),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H025,H004),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; altree-v1.3.1/test/phylip/outgroup_present/association/outfile0000644000175000017500000366537612043315246025164 0ustar vdanjeanvdanjean Mixed parsimony algorithm, version 3.69 Wagner parsimony method 100 trees in all found +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +--H023 ! +--------------------------------------------------------------------------------------6 ! ! +--H026 ! ! +-----1 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +----16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H023 ! ! +-----6 +--------------------------------------------------------------------------------------H026 ! ! +--1 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 1 no ..... ..... 1 H026 yes 0.... ..... 1 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! +-24 +-----------------------------------------------------------------H031 ! ! ! ! +--------------------------------------------------------------H005 +-28 ! ! ! +-----H008 ! ! +----------------------------------------------------19 ! ! ! ! +--H025 +-30 ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! +-24 +-----------------------------------------------------------------H005 ! ! ! ! +--------------------------------------------------------------H031 +-30 ! ! ! +-----H008 ! ! +----------------------------------------------------19 ! ! ! ! +--H025 +-28 ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 30 yes ...0. ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----H008 ! ! +----------------------------------------------------------19 +-24 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--H005 +--2 +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +--H005 ! ! +-------30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-24 ! ! +-----H008 ! ! +----19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--H025 ! ! +----------------------------------------------------25 +-28 ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-----2 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--H025 ! ! +----------------------------------------------------------25 +-19 ! +--H004 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +--2 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----------------------------------------------------------------H008 ! ! ! +-24 ! +--H005 ! ! +----30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H025 ! ! +----25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--------H031 ! ! +----------------------------------------------------28 ! ! ! ! +-----H005 +-19 ! +-30 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--------H005 ! ! +----------------------------------------------------30 ! ! ! ! +-----H031 +-19 ! +-28 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +--H025 +-24 +-------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H032 ! ! +-24 +--------------------------------------------------------------------H016 ! ! ! ! +--H025 +--7 +-------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 24 yes ..0.. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! +----------34 +-------------31 ! ! +-20 ! ! ! +--H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H033 ! ! ! ! ! +-------18 ! ! ! ! ! ! +--H010 +--3 ! ! +----12 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H033 ! ! ! ! ! +-------18 ! ! ! ! ! ! +--H010 +--3 ! ! +-12 ! +--5 ! +--H014 ! ! ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! ! +----------34 +-------------18 ! ! +-20 ! ! ! +--H010 ! ! ! ! ! ! ! ! ! ! +-12 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +----21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--H033 ! ! ! ! ! +----------18 ! ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! ! +--------H003 +--3 ! ! ! ! ! +--5 +----21 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 12 no ..... ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! ! +----31 ! ! +-20 +----------34 ! +--H003 ! ! ! ! ! +-------21 ! ! ! ! ! ! ! +--H033 ! ! ! ! ! ! +----18 ! ! ! ! +-12 +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H003 ! ! ! ! +----------34 +-------21 ! ! +-20 ! ! ! ! +-----H011 ! ! ! ! ! ! +-31 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! ! ! +-----H003 ! ! ! ! +-31 +-------21 ! ! ! ! ! ! ! +--H033 ! ! ! ! ! ! +-18 ! ! ! ! +-12 +--H010 +--3 ! ! ! ! +--5 ! +--H014 ! ! ! +-33 ! ! +-------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 12 no ..... ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +-----H003 ! ! ! ! +----------34 +----------21 ! ! +-20 ! ! ! ! +--H033 ! ! ! ! ! ! +-18 ! ! ! ! +-12 +--H010 ! ! ! ! ! ! ! ! ! ! +--------H011 +--3 ! ! ! ! ! ! ! +-------31 +--H014 ! +--5 ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H012 ! ! +-29 +--------------------------------------------------------------------------------H009 ! ! +-16 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +-----------H033 ! ! ! ! ! ! ! ! ! ! +-18 +--------H010 +--3 ! ! ! ! ! +--5 +-12 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 yes ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +-----------H010 ! ! ! ! ! ! ! ! ! ! +-12 +--------H033 +--3 ! ! ! ! ! +--5 +-18 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 15 yes ..1.. ..... 15 33 yes ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! +----------34 +-------------31 ! ! +-20 ! ! ! +--H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H014 ! ! ! ! ! +-------33 ! ! ! ! ! ! +--H017 +--3 ! ! +----15 ! ! ! ! +--H033 ! +--5 ! +-18 ! ! +----12 +--H010 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----H008 ! ! +----------------------------------------------------------19 +-24 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--H005 +--2 +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +----14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +--H005 ! ! +-------30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-24 ! ! +-----H008 ! ! +----19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H031 ! ! +----------------------------------------------------28 ! ! ! ! +--------H005 ! ! ! +-30 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-------14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-------------14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! +----------------13 ! ! +-----H015 ! +--9 ! ! +--H001 ! +-11 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H015 ! +--------------9 ! ! +-----H001 ! +-11 ! ! +--H028 ! +-13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-22 ! +----------------------------------------------------------------------------------------------17 +--H007 ! ! ! ! ! +-----H006 +-10 ! +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-------27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +-----------------------------------------------------------------------------------------------------H006 ! ! ! ! +--H035 +-10 +----------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H015 ! +--------------9 ! ! +-----H028 ! +-13 ! ! +--H001 ! +-11 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 ! +----22 -35 ! +--H007 ! +-------------------------------------------------------------------------------------------17 ! ! ! +--H030 ! ! +----27 ! ! +--H006 +-10 ! +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----------25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 ! ! ! +--H023 +--1 +-----6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-------------------------------------------------------------------------------30 ! ! ! +--H031 +--2 ! ! ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------7 +-28 ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +-----1 ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 1 no ..... ..... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! ! ! +--H035 +-10 +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----17 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! ! ! ! +--H005 +----25 ! +----------------------30 ! ! ! +--H031 ! ! ! ! ! +-------------------------------------------------------28 +--H032 ! ! ! ! +----------------24 +--2 ! ! ! +--H016 ! ! +-----7 ! ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 +--1 ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------------19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 +--2 ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! ! ! ! +----------------13 +--H001 ! ! +-11 ! +--9 +--H015 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +--------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H001 ! ! +-11 ! ! ! ! +--H028 ! +--------------9 +-13 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----H033 +-14 ! ! ! +----------------------------18 ! ! +--4 ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! ! ! ! ! +--5 +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 +--3 +-------20 ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! ! ! +----33 ! +-15 +--H017 ! ! ! ! +--H028 ! ! +-13 ! ! +-11 +--H001 ! ! ! ! ! +--------------9 +-----H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H032 ! ! ! ! ! +-------------------------------------------------------------24 +-----------------H016 ! ! ! ! ! +--2 ! +--7 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +-----H017 ! ! ! +----15 ! +--5 ! +--H014 ! ! +-33 ! ! +--H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +-----H014 ! ! ! +----33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! +----------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H001 ! +-------------11 ! ! +-----H015 ! +--9 ! ! +--H028 ! +-13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H001 ! ! ! ! +-------------11 +--H028 ! ! +-13 ! +--9 +--H015 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H028 ! ! +----13 ! ! ! +--H001 ! +-------------11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H028 ! ! +----13 ! ! ! +--H001 ! +-------------11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H001 ! +-------------11 ! ! +-----H028 ! +-13 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! +-10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +-25 ! ! ! +-----------------------------------------------------------------------------------H008 ! ! ! +--2 ! +--------------------H016 ! ! +-----------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +-19 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 1 no ..... ..... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +-----------------------H008 ! ! +----------------------------------------------------------19 ! ! ! ! +--------------------H016 ! ! ! +--7 ! ! ! ! +-----------------H032 +--2 ! +-24 ! ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------------------------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 19 no ..... ..... 19 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! +----26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 ! ! ! +--H023 +--1 +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +-----------------------------------------------------------------------------------------------------H030 ! ! ! ! +--H035 +-27 +----------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +-----H030 -35 +----------------------------------------------------------------------------------------------27 ! ! ! +--H035 ! ! +-22 ! ! +--H007 +-17 ! +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-------10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H031 ! +----------------------------------------------------28 ! ! ! +--H005 ! ! +-30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H012 ! ! +-29 ! ! ! +-----H009 ! ! +-16 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! +-27 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +-25 ! ! ! +-----------------------------------------------------------------------------------H031 ! ! ! +--2 ! +--------------------H032 ! ! +----------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +-28 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 1 no ..... ..... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----------------------19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-28 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H031 +----------------------19 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 28 maybe ..... ..?.. 28 H031 maybe ..... ..1.. 28 14 yes ..... ...1. 14 H024 maybe ..... ..0.. 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 +--1 ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------------H031 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------28 ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +-----------------------H031 ! ! +----------------------------------------------------------28 ! ! ! ! +--------------------H032 ! ! ! +-24 ! ! ! ! +-----------------H016 +--2 ! +--7 ! ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------------------------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H031 ! +----------------------------------------------------28 ! ! ! +--H005 ! ! +-30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H011 +--3 ! ! +-31 ! ! ! ! +-----H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 +--1 ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H012 ! ! +-29 ! ! ! +-----H009 +--1 +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 ! +----27 -35 ! +--H006 ! +-------------------------------------------------------------------------------------------10 ! ! ! +--H025 ! ! +----25 ! ! +--H004 +--2 ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--------H030 ! +-------------------------------------------------------------------------------------------27 -35 ! ! +-----H006 ! ! +-10 ! ! ! +--H025 ! ! +-25 +--2 +--H004 ! ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--------H006 ! +-------------------------------------------------------------------------------------------10 -35 ! ! +-----H030 ! ! +-27 ! ! ! +--H025 ! ! +-25 +--2 +--H004 ! ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H025 -35 +-------------------------------------------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H025 ! +-------------------------------------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 2 no ..... ..... 2 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... altree-v1.3.1/test/phylip/ancestor_present/0000755000175000017500000000000012252703410021152 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/phylip/ancestor_present/association/0000755000175000017500000000000012252703410023466 5ustar vdanjeanvdanjeanaltree-v1.3.1/test/phylip/ancestor_present/association/trio.phy0000644000175000017500000000144412043315246025174 0ustar vdanjeanvdanjean 36 10 H019 0100101111 H026 0111010001 H004 0100110001 H020 1000011110 H034 0100011110 H027 1111001110 H023 1111010001 H016 0101100001 H002 1111100001 H015 1000011101 H006 1000010001 H001 1000011111 H010 1101011110 H028 1000011011 H024 0100100011 H017 1111011111 H009 1111000101 H007 1101010001 H033 0101011110 H008 0100100001 H029 0100011111 H003 1101111111 H035 1101010000 H013 0100101110 H032 0101101001 H025 0100010001 H021 0111100101 H030 1100010011 H031 0100100101 H012 1111000001 H005 0100100000 H011 1101011111 H022 0100111110 H014 0111011111 H018 1100011111 ANCE 1100010001 altree-v1.3.1/test/phylip/ancestor_present/association/nb_cas_controls.txt0000644000175000017500000000104212043315246027400 0ustar vdanjeanvdanjeanH019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 ANCE m004 c004 altree-v1.3.1/test/phylip/ancestor_present/association/run_altree0000755000175000017500000000057012043315246025562 0ustar vdanjeanvdanjean#!/bin/sh -x # To run phylip, option A and 5 are used phylip mix # To perform the association test. The ancestral sequence must be # provided with the --anc-seq option beacuse it is not in the phylip # output file altree -i outfile -j nb_cas_controls.txt \ -a -t SNP -p phylip -r 1 --data-qual qualitative\ --tree-to-analyse 1 --anc-seq 1100010001 -o 1_trio_phy.asso altree-v1.3.1/test/phylip/ancestor_present/association/1_trio_phy.asso0000644000175000017500000001472212043315246026444 0ustar vdanjeanvdanjean /----* H035 (LEVEL: 2) case/control:1/0 | Site: 10 Sens: 1-->0 /----* 22 (LEVEL: 1) case/control:26/36 | | Site: 4 Sens: 0-->1 | \----* H007 (LEVEL: 2) case/control:25/36 | /----* H025 (LEVEL: 2) case/control:2/3 |----* 25 (LEVEL: 1) case/control:75/51 | | Site: 1 Sens: 1-->0 | | /----* H004 (LEVEL: 3) case/control:11/2 | \----* 2 (LEVEL: 2) case/control:73/48 | | Site: 5 Sens: 0-->1 | | /----* H005 (LEVEL: 4) case/control:2/2 | | | Site: 10 Sens: 1-->0 | | |----* H031 (LEVEL: 4) case/control:1/0 | | | Site: 8 Sens: 0-->1 | | |----* H008 (LEVEL: 4) case/control:28/19 | \----* 19+(30+(28))+(14) (LEVEL: 3) case/control:62/46 | | Site: 6 Sens: 1-->0 | |----* H024 (LEVEL: 4) case/control:1/0 | | Site: 9 Sens: 0-->1 | | /----* H032 (LEVEL: 5) case/control:0/1 | | | Site: 7 Sens: 0-->1 | | |----* H016 (LEVEL: 5) case/control:2/2 | \----* 7+(24) (LEVEL: 4) case/control:30/25 | | Site: 4 Sens: 0-->1 | | /----* H021 (LEVEL: 6) case/control:11/2 | | | Site: 8 Sens: 0-->1 | \----* 26 (LEVEL: 5) case/control:28/22 | | Site: 3 Sens: 0-->1 | | /----* H002 (LEVEL: 7) case/control:9/3 | \----* 8 (LEVEL: 6) case/control:17/20 | | Site: 1 Sens: 0-->1 | | /----* H012 (LEVEL: 8) case/control:1/2 | | |----* H009 (LEVEL: 8) case/control:5/10 | | | Site: 8 Sens: 0-->1 | \----* 16+(29) (LEVEL: 7) case/control:8/17 | | Site: 5 Sens: 1-->0 | | /----* H023 (LEVEL: 9) case/control:1/5 | \----* 6 (LEVEL: 8) case/control:2/5 | | Site: 6 Sens: 0-->1 | \----* H026 (LEVEL: 9) case/control:1/0 | Site: 1 Sens: 1-->0 |----* ANCE (LEVEL: 1) case/control:4/4 -----* 1+(17)+(27+(35)) (LEVEL: 0) case/control:204/204 | | [0] ddl=4 chi2=7.12 p_value_chi2=0.105 | [1] ddl=7 chi2=10.66 p_value_chi2=0.131 | [2] ddl=9 chi2=19.12 p_value_chi2=0.01 | [3] ddl=16 chi2=24.70 p_value_chi2=0.05 | [4] ddl=20 chi2=40.53 p_value_chi2=0.002 | [5] ddl=25 chi2=54.97 p_value_chi2=0 | [6] ddl=30 chi2=63.51 p_value_chi2=0 | [7] ddl=33 chi2=64.80 p_value_chi2=0 | [8] ddl=35 chi2=68.34 p_value_chi2=0 |----* H030 (LEVEL: 1) case/control:1/1 | Site: 9 Sens: 0-->1 | /----* H006 (LEVEL: 2) case/control:23/19 \----* 10 (LEVEL: 1) case/control:98/112 | Site: 2 Sens: 1-->0 | /----* H028 (LEVEL: 3) case/control:4/0 \----* 13 (LEVEL: 2) case/control:75/93 | Site: 7 Sens: 0-->1 | Site: 9 Sens: 0-->1 | /----* H015 (LEVEL: 4) case/control:2/6 | | Site: 9 Sens: 1-->0 | |----* H001 (LEVEL: 4) case/control:24/39 \----* 3+(9+(11)) (LEVEL: 3) case/control:71/93 | Site: 8 Sens: 0-->1 |----* H020 (LEVEL: 4) case/control:5/9 | Site: 10 Sens: 1-->0 | /----* H018 (LEVEL: 5) case/control:2/2 | | /----* H011 (LEVEL: 6) case/control:3/8 | | |----* H003 (LEVEL: 6) case/control:2/0 | | | Site: 5 Sens: 0-->1 | |----* 21+(31)+(15) (LEVEL: 5) case/control:9/25 | | | Site: 4 Sens: 0-->1 | | | /----* H014 (LEVEL: 7) case/control:2/3 | | | | Site: 1 Sens: 1-->0 | | |----* 33 (LEVEL: 6) case/control:2/11 | | | | Site: 3 Sens: 0-->1 | | | \----* H017 (LEVEL: 7) case/control:0/8 | | | /----* H010 (LEVEL: 7) case/control:1/3 | | | |----* H033 (LEVEL: 7) case/control:0/1 | | | | Site: 1 Sens: 1-->0 | | \----* 12+(18) (LEVEL: 6) case/control:2/6 | | | Site: 10 Sens: 1-->0 | | \----* H027 (LEVEL: 7) case/control:1/2 | | Site: 6 Sens: 1-->0 | | Site: 3 Sens: 0-->1 \----* 5+(34) (LEVEL: 4) case/control:40/39 | Site: 2 Sens: 0-->1 | /----* H029 (LEVEL: 6) case/control:1/3 \----* 20 (LEVEL: 5) case/control:29/12 | Site: 1 Sens: 1-->0 | /----* H034 (LEVEL: 7) case/control:1/0 \----* 4 (LEVEL: 6) case/control:28/9 | Site: 10 Sens: 1-->0 | /----* H022 (LEVEL: 8) case/control:9/1 \----* 32 (LEVEL: 7) case/control:27/9 | Site: 5 Sens: 0-->1 | /----* H013 (LEVEL: 9) case/control:15/5 \----* 23 (LEVEL: 8) case/control:18/8 | Site: 6 Sens: 1-->0 \----* H019 (LEVEL: 9) case/control:3/3 Site: 10 Sens: 0-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 altree-v1.3.1/test/phylip/ancestor_present/association/outtree0000644000175000017500000006313012043315246025107 0ustar vdanjeanvdanjean(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,((H015, (H001,H020)),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(((H001, H015),H020),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H001, ((H015,H020),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H035,H007),((ANCE,H030),((H025,(H004,(((H005,(H031,H008)),H024), (H032,(H016,(H021,(H002,((H012,H009),(H023,H026))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H035,H007),((H025,(H004,(((H005,(H031,H008)),H024),(H032,(H016,(H021, (H002,((H012,H009),(H023,H026))))))))),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(((H005,(H031,H008)),H024), (H032,(H016,(H021,(H002,((H012,H009),(H023,H026)))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),((H030,(ANCE,(H025,(H004,(((H005,(H031,H008)),H024),(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),((ANCE,(H030,(H025,(H004,(((H005,(H031,H008)),H024),(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,(H005,((H031,H008),(H032, (H016,(H021,(H002,((H012,H009),(H023,H026)))))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,((H031,H008),(H005,(H032, (H016,(H021,(H002,((H012,H009),(H023,H026)))))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,((H005,(H031,H008)),(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,(H005,(H031,(H008,(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,(H005,(H008,(H031,(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,((H005,(H031,H008)),(H024,(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,(((H005,(H031,H008)),H024),(H032,(H016,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H025,(H004,(((H005,(H031,H008)),H024),((H032,H016),(H021,(H002,((H012, H009),(H023,H026)))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(((H005,(H031,H008)),H024),(H032,(H016,(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(((H005,(H031,H008)),H024),(H016,(H032,(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(H024,((H005,(H031,H008)),((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H031,H008),(H005,(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026)))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(H005,((H031,H008),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026)))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,(H003,(H011,((H014,H017),(H010,(H033,H027)))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,(H011,(H003,((H014,H017),(H010,(H033,H027)))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(H005,(H008,(H031,(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))))),((H035,H007),((ANCE,H030),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(H005,(H031,(H008,(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))))),((H035,H007),((ANCE,H030),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H035,H007),((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026))))))))),((ANCE,H030),(H006,(H028,((H001, (H015,H020)),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,((H001, (H015,H020)),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H001, (H015,H020)),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H028,((H001,H020),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,((H001, H015),(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,((H028,H020),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, ((H028,H001),(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, ((H028,H001),(H020,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,(H028,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,(H028,(H020,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,(H028,(H020,((H018,((H011,H003),((H014,H017),(H033,(H010,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,(H020,(H028,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H034,(H033,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,((H033,H034),(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H008,(H031,H024))),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(((H031,H008),(H005,H024)),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,((H031,H008),H024)),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(((H005,(H031,H008)),H024),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,(H008,H024))),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H012,(H009,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H008,H024),((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H031,(H005,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,(((H005,H031),H008),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,(H008,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,H031),(H008,(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H011,((H003,(H014,H017)),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H011,((H014,H017),(H003,(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),((H032,H016),(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,((H031,H024),(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,((H031,H008),(H024,(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,(H031,(H024,(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H031,(H008,(H024,(H005,(H032,(H016, (H021,(H002,((H012,H009),(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H031,(H008,(H024,(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,((H005,H031),(H008,(H024,(H032,(H016, (H021,(H002,(H012,(H009,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H031,(H008,(H024,(H005,(H032,(H016, (H021,(H002,(H012,(H009,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H005,(H031,(H008,(H024,(H032,(H016, (H021,(H002,(H012,(H009,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,(H024,(H031,(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,(H024,(H005,(H031,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),(H030,(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H030,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H030,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; ((H030,((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H030,(H035,H007)),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H030,(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H011,(H003,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H033,(H010,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H028,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H028,(H001,(H020,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H028,(H020,(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H015,(H020,(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H015, (H020,(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H001, (H015,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H033,H010),(H017,(H014,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H033,H010),((H014,H017),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H033,H010),(H014,(H017,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H032,(H016,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H020,((H001,H015),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H020,((H001,H015),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H014,H017),(H033,(H010,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H001, (H020,(H015,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H020,(H015,(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H020, (H015,(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H020,(H001,(H015,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; altree-v1.3.1/test/phylip/ancestor_present/association/ancestors0000644000175000017500000000001412043315246025411 0ustar vdanjeanvdanjean11000100011 altree-v1.3.1/test/phylip/ancestor_present/association/outfile0000644000175000017500000374253412043315246025106 0ustar vdanjeanvdanjean Mixed parsimony algorithm, version 3.69 Wagner parsimony method 100 trees in all found +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----------------------------------------------27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +-----H015 ! ! +--------------------------------------9 ! ! ! ! +--H001 +-13 ! +-11 ! ! +--H020 ! ! ! ! +--------------------H018 ! ! ! +--3 ! +--H011 ! +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----------------------------------------------27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +--H001 ! ! +-11 ! ! +--------------------------------------9 +--H015 +-13 ! ! ! ! +-----H020 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--3 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H001 +-13 ! ! ! +--H015 ! ! +--------------------------------------9 +-11 ! +--H020 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--3 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 11 yes ..... ..1.. 11 H001 no ..... ..... 11 3 no ..... ..... 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------------------------------------------------------------35 ! ! +--H030 -17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! ! +----------------------------------------------------25 ! ! ! ! ! ! +-----H005 ! ! ! ! ! +-30 +----27 ! +--2 ! ! +--H031 ! ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! ! ! +----------24 +-----------------H016 ! ! ! ! +-----1 +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--------------------------------------H025 ! ! ! ! +-----------------------------------H004 ! +----------------------------------------------------------25 ! ! ! ! ! +-----H005 ! ! ! ! +-30 ! ! +--2 ! ! +--H031 -17 ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! ! ! +----------24 +-----------------H016 ! ! ! ! ! ! +--7 +--------------H021 +-----1 ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! ! ! +----------------------------------------------------27 +--------------------------------------H025 ! ! ! ! ! ! ! ! +-----------------------------------H004 ! ! +----25 ! -17 ! ! ! +-----H005 ! ! ! ! +-30 ! ! +--2 ! ! +--H031 ! ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! ! ! +----------24 +-----------------H016 +-----1 ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--------------------------------------------H030 ! ! ! +----------------------------------------------------27 +-----------------------------------------ANCE ! ! ! ! ! ! +-35 +--------------------------------------H025 ! ! ! ! ! ! ! ! +-----------------------------------H004 -17 ! +-25 ! ! ! ! ! +-----H005 ! ! ! ! +-30 ! ! +--2 ! ! +--H031 ! ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! +-----1 +----------24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 35 no ..... ..... 35 ANCE no ..... ..... 35 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--------------------------------------------ANCE ! ! ! +----------------------------------------------------35 +-----------------------------------------H030 ! ! ! ! ! ! +-27 +--------------------------------------H025 ! ! ! ! ! ! ! ! +-----------------------------------H004 -17 ! +-25 ! ! ! ! ! +-----H005 ! ! ! ! +-30 ! ! +--2 ! ! +--H031 ! ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! +-----1 +----------24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-14 +-----------------------------H005 ! ! ! ! ! ! +-30 +--H031 ! ! ! +----------------------28 ! ! ! ! +--H008 ! ! +-19 ! ! ! +--------------------H032 ! ! ! ! +-----1 +----24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-14 +--H031 ! ! ! +-------------------------28 ! ! ! ! +--H008 ! ! +-19 ! ! ! +-----------------------H005 ! ! ! ! ! ! +----30 +--------------------H032 ! ! ! ! +-----1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! ! ! +-----H005 ! ! +-14 +----------------------30 ! ! ! ! ! +--H031 ! ! ! ! +-28 ! ! +-19 +--H008 ! ! ! ! ! ! +--------------------H032 ! ! ! ! +-----1 +-------24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-14 +-----------------------------H005 ! ! ! ! ! ! +-30 +--------------------------H031 ! ! ! ! ! ! +-28 +-----------------------H008 ! ! ! ! ! ! +-19 +--------------------H032 ! ! ! ! +-----1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-14 +-----------------------------H005 ! ! ! ! ! ! +-30 +--------------------------H008 ! ! ! ! ! ! +-19 +-----------------------H031 ! ! ! ! ! ! +-28 +--------------------H032 ! ! ! ! +-----1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! ! ! +-----H005 ! ! +--2 +-------------------------30 ! ! ! ! ! +--H031 ! ! ! ! +-28 ! ! +-19 +--H008 ! ! ! ! ! ! +-----------------------H024 ! ! ! ! ! ! +-------14 +--------------------H032 ! ! ! ! +-----1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 ! +----------------------------------------------------------17 +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! +----25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! +-14 +--------H024 ! ! ! ! +--------------------H032 ! ! ! ! +----------24 +-----------------H016 --1 ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! ! +-----------------------------------H004 +----------------------------------------------------------------25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! ! ! +--------H024 ! +-14 ! ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! +-----------7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! ! +-----------------------------------H004 +----------------------------------------------------------------25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! +-14 +--------H024 ! ! ! ! +--------------------H032 ! ! ! ! +----------24 +-----------------H016 ! ! ! ! +--7 +--------------H021 --1 ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! ! +-----------------------------------H004 +----------------------------------------------------------------25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! +-14 +--------H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 ! ! ! ! +-24 +--------------H021 --1 ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! ! ! +--H008 ! +-19 ! ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--------7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--H031 ! ! +----------------------------28 ! ! ! +--H008 ! +-19 ! ! +--------------------------H005 ! ! ! ! +----30 +-----------------------H024 ! ! ! ! +-14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H005 ! ! ! ! +-30 +--H031 ! ! +-------------------------28 ! ! ! +--H008 ! +-19 ! ! +-----------------------H024 ! ! ! ! +----14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! +-------------34 +-----------------H003 +----11 ! ! ! ! ! +-21 +--------------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 +--5 +-15 ! ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! +-------------34 +-----------------H011 +----11 ! ! ! ! ! +-31 +--------------H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 +--5 +-15 ! ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H005 ! ! ! ! +-30 +-----------------------------H008 ! ! ! ! +-19 +--------------------------H031 ! ! ! ! +-28 +-----------------------H024 ! ! ! ! +-14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H005 ! ! ! ! +-30 +-----------------------------H031 ! ! ! ! +-28 +--------------------------H008 ! ! ! ! +-19 +-----------------------H024 ! ! ! ! +-14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--------------------------------------H025 ! ! ! +----------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! ! ! +-----H005 ! ! +--2 +-------------------------30 ! ! ! ! ! +--H031 -17 ! ! ! +-28 ! ! +-19 +--H008 ! ! ! ! ! ! +-----------------------H024 ! ! ! ! ! ! +-------14 +--H032 ! ! ! +----------------24 ! ! ! ! +--H016 ! ! +--7 ! ! ! +--------------H021 +-----1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----------------------------------------27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +-----H001 ! ! +-------------------------------------11 ! ! ! ! +--H015 +-13 ! +--9 ! ! +--H020 ! ! ! ! +--------------------H018 ! ! ! +--3 ! +--H011 ! +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----------------------------------------------27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +-----H001 ! ! +-------------------------------------11 ! ! ! ! +--H015 +-13 ! +--9 ! ! +--H020 ! ! ! ! +--------------------H018 ! ! ! +--3 ! +--H011 ! +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +-----H001 ! ! +-------------------------------------11 ! ! ! ! +--H015 +-13 ! +--9 ! ! +--H020 ! ! ! ! +--------------------H018 ! ! ! +--3 ! +--H011 ! +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! ! ! +--------------------------------------------H028 +--9 ! ! ! +--H001 ! ! +-------------------------------------11 +-13 ! +--H020 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--3 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .1?.. 9 H015 maybe ..... ..1.. 9 13 yes ..... ...1. 13 H028 maybe ..... ..0.. 13 3 maybe ..... ..1.. 3 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H001 +-13 +----------------------------------------11 ! ! +--H015 ! ! ! ! +--------------------------------------H020 +--9 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-----3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 9 yes ..... ..1.. 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! ! ! +--------------------------------------------H001 +--9 ! ! ! +--H028 ! ! +-------------------------------------13 +-11 ! +--H020 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--3 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! ! ! +--H028 +--9 +----------------------------------------13 ! ! +--H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-----3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! ! ! +--H028 +--9 +----------------------------------------13 ! ! +--H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-----3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H028 +-11 ! ! ! +--------------------------------------H020 ! ! ! +-13 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H028 +-11 ! ! ! +--------------------------------------H020 ! ! ! +-13 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H028 +-11 ! ! ! +--------------------------------------H020 ! ! ! +-13 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H033 ! +----18 ! ! +--H010 ! +-12 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H020 +-11 ! ! ! +--------------------------------------H028 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-13 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 13 no ..... ..... 13 H028 yes ..... ..0.. 13 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H034 +--4 ! +--------H033 +-18 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 18 no ..... ..... 18 H033 yes ...1. ..... 18 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 ! ! +-------------------20 +--H033 ! +-------18 ! ! +--H034 +--4 ! +-----H022 +----32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 18 no ..... ..... 18 H033 yes ...1. ..... 18 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +--------H005 ! +--2 +----------------------30 ! ! ! ! +-----H008 ! ! ! +-19 ! ! ! ! +--H031 ! +-14 +-28 ! ! +--H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 ! +----------------------------------------------------------17 +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! +----25 ! ! ! ! +--H031 ! ! ! +----28 ! +--2 ! +--H008 ! ! +----------------------19 ! ! ! ! +--H005 ! ! ! +----30 ! +-14 +--H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 ! +----------------------------------------------------------17 +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! +----25 ! ! ! ! +--------H005 ! ! ! ! ! +--2 +----------------------30 +--H031 ! ! ! ! +-28 ! ! ! +-19 +--H008 ! ! ! ! ! +-14 +-----H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 ! +----------------------------------------------------------17 +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! +----25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! +-14 +--------H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +--------H005 ! +--2 +----------------------30 ! ! ! ! +-----H031 ! ! ! +-28 ! ! ! ! +--H008 ! +-14 +-19 ! ! +--H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! ! ! ! +--------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H012 ! +-29 ! ! +-----H009 ! +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +--H008 ! +--2 +----------------------------19 ! ! ! +--H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +----28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 H008 no ..... ..... 19 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H031 ! +-14 +----------------------28 ! ! ! ! +--H005 ! ! ! +-30 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +--H005 ! +-14 +-30 ! ! +----------------------28 +--H031 ! ! ! ! ! +-19 +-----H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! +-14 +-----------------------------H008 ! ! ! ! +-19 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! +-14 +--H005 ! ! +-------------------------30 ! ! ! +--H031 ! +-28 ! ! +-----------------------H008 ! +----19 ! ! +--------------------H016 ! +--7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H011 +--3 ! ! ! ! ! ! ! +-----H003 ! ! +-31 +----21 ! ! ! ! ! +--H014 ! ! ! ! +-33 +--5 +-15 +--H017 ! ! ! ! +--H010 ! +-------12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 15 no ..... ..... 15 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H011 +--3 ! ! ! ! ! +-31 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +-15 +--5 ! +-----H003 ! +----21 ! ! +--H010 ! +-12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 yes ..... ....0 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! ! ! +--H005 ! +-14 +----------------------30 ! ! ! +--H031 ! ! ! ! +-28 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +-----7 ! ! +--------------H021 ! +----26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--------------------------------H008 ! ! ! ! ! ! +-19 +--H031 ! ! ! +-------------------------28 ! ! ! ! +--H024 ! ! +-14 ! ! ! +-----------------------H005 ! ! +----30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--H031 ! ! ! +----------------------------28 ! ! ! ! +--H008 ! ! +-19 ! ! ! +--------------------------H024 ! ! +----14 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H008 ! ! +-19 ! ! ! +-----------------------------H031 ! ! +-28 ! ! ! +--------------------------H024 ! ! +-14 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--------------------------------H031 ! ! ! ! ! ! +-28 +-----------------------------H008 ! ! ! ! ! ! +-19 +--------------------------H024 ! ! ! ! ! ! +-14 +-----------------------H005 ! ! ! ! ! ! +-30 +--------------------H032 ! ! ! ! +--1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H031 ! ! +-28 ! ! ! +-----------------------------H008 ! ! +-19 ! ! ! +--------------------------H024 ! ! +-14 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--H005 ! ! ! +----------------------------30 ! ! ! ! +--H031 ! ! +-28 ! ! ! +--------------------------H008 ! ! +----19 ! ! ! +-----------------------H024 ! ! +-14 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H012 ! +-29 ! ! +-----H009 ! +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H031 ! ! +-28 ! ! ! +-----------------------------H008 ! ! +-19 ! ! ! +--------------------------H024 ! ! +-14 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H012 ! +-29 ! ! +-----H009 ! +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H005 ! ! +-30 ! ! ! +-----------------------------H031 ! ! +-28 ! ! ! +--------------------------H008 ! ! +-19 ! ! ! +-----------------------H024 ! ! +-14 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H012 ! +-29 ! ! +-----H009 ! +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--------------------------------H008 ! ! ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! ! ! +-14 +--H005 ! ! ! +----------------------30 ! ! ! ! +--H031 ! ! +-28 ! ! ! +--------------------H032 ! ! +----24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H008 ! ! +-19 ! ! ! +-----------------------------H024 ! ! +-14 ! ! ! +--------------------------H031 ! ! +-28 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H008 ! ! +-19 ! ! ! +-----------------------------H024 ! ! +-14 ! ! ! +--------------------------H005 ! ! +-30 ! ! ! +-----------------------H031 ! ! +-28 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 ! ! +-----------------H016 --1 +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 --1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--------------------------------------------------------H030 ! ! +----------------------------------------------27 +-----------------------------------------------------ANCE ! ! +-35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 --1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--------------------------------------------------------ANCE ! ! +----------------------------------------------35 +-----------------------------------------------------H030 ! ! +-27 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 27 maybe ..... ...?. 27 H030 maybe ..... ...1. 27 10 yes .0... ..... 10 H006 maybe ..... ...0. 10 13 yes ..... .1... 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 --1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--------------------------------------------------------ANCE ! ! +----------------------------------------------35 +-----------------------------------------------------H006 ! ! +-10 +--------------------------------------------------H030 ! ! +-27 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 maybe .?... ..... 10 H006 maybe .0... ..... 10 27 yes ..... ...1. 27 H030 maybe .1... ..... 27 13 yes .0... .1... 13 H028 no ..... ..... 13 9 yes ..... ..1.. 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +-----------------------------------------------H030 ! +-------------------------------------------------------27 +--H035 ! ! +----------------------------------------22 ! ! ! +--H007 ! +-17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 --1 +----24 ! ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +-------------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +-----H030 +----------------------------------------27 ! ! +--H035 ! +-22 +-------------------------------------------------------17 +--H007 ! ! ! ! +--------------------------------------H025 ! ! ! ! +-------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 --1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +-------------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +-------------------------------------------22 ! +--H007 +-------------------------------------------------------17 ! ! +-----------------------------------------H030 ! ! ! ! +----27 +--------------------------------------H025 ! ! ! ! +-25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 --1 +----24 ! ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +-------------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H011 +--3 ! ! ! ! ! +-31 +-----------H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H033 ! +----18 ! ! +--H010 ! +-12 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H028 ! ! ! ! +-----------------------------------------H001 +-13 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .1?.. 9 H015 maybe ..... ..1.. 9 13 yes ..... ...1. 13 H028 maybe ..... ..0.. 13 11 maybe ..... ..1.. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H028 ! ! ! ! +-----------------------------------------H001 +-13 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .1?.. 9 H015 maybe ..... ..1.. 9 13 yes ..... ...1. 13 H028 maybe ..... ..0.. 13 11 maybe ..... ..1.. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H028 ! ! ! ! +-----------------------------------------H020 +-13 ! ! ! +--------------------------------------H001 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .1?.. 9 H015 maybe ..... ..1.. 9 13 yes ..... ...1. 13 H028 maybe ..... ..0.. 13 3 maybe ..... ..1.. 3 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H020 +--9 ! ! ! +--------------------------------------H001 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 3 maybe ..... ...1. 3 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H020 +--9 ! ! ! +--------------------------------------H001 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 3 maybe ..... ...1. 3 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H015 +-11 ! ! ! +--------------------------------------H020 ! ! ! +--9 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 11 yes ..... ..1.. 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H033 ! ! ! +-------18 ! ! ! ! +--H010 ! ! +----12 +-----5 ! +-----H017 ! +----15 ! ! +--H014 ! +-33 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 no ..... ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H033 ! ! ! +-------18 ! ! ! ! +--H010 ! ! +----12 +-----5 ! +--H014 ! ! +-33 ! +----15 +--H017 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H033 ! ! ! +-------18 ! ! ! ! +--H010 ! ! +----12 +-----5 ! +-----H014 ! +----33 ! ! +--H017 ! +-15 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 no ..... ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H032 ! ! ! ! +-24 +-----------------H016 --1 ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +-----H033 ! +----18 ! ! +--H010 ! +-12 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H020 +-11 ! ! ! +--------------------------------------H015 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--9 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 11 yes ..... ..1.. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H020 ! ! ! ! +-----------------------------------------H015 +--3 ! ! ! +--------------------------------------H001 ! ! ! +--9 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H020 ! ! ! ! +-----------------------------------------H015 +--3 ! ! ! +--------------------------------------H001 ! ! ! +--9 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H020 ! ! ! ! +-----------------------------------------H001 +--3 ! ! ! +--------------------------------------H015 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--9 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 altree-v1.3.1/.gitignore0000644000175000017500000000014312043434551015303 0ustar vdanjeanvdanjeanMakefile Makefile.old *.o lib*.a pm_to_blib MYMETA.yml /blib/ /CUtils/CUtils.bs /CUtils/CUtils.c altree-v1.3.1/MANIFEST0000644000175000017500000002405512252703411014450 0ustar vdanjeanvdanjean.gitignore ALTree/Base.pm ALTree/Chi2.pm ALTree/Foret.pm ALTree/Import.pm ALTree/Input.pm ALTree/Nanova.pm ALTree/Node.pm ALTree/Sens.pm ALTree/Site.pm ALTree/SiteCollection.pm ALTree/SitePerForet.pm ALTree/SitePerTree.pm ALTree/SiteSens.pm ALTree/SiteSensPerForet.pm ALTree/SiteSensPerTree.pm ALTree/to_rewrite.pm ALTree/Tree.pm ALTree/Utils.pm bash_completion Changes CUtils/c_sources/chisq.c CUtils/c_sources/chisq.h CUtils/c_sources/datatype.h CUtils/c_sources/debug.h CUtils/c_sources/double_permutation.c CUtils/c_sources/double_permutation.h CUtils/c_sources/fisher.c CUtils/c_sources/fisher.h CUtils/c_sources/Makefile.PL CUtils/c_sources/mt19937ar.c CUtils/c_sources/mt19937ar.h CUtils/c_sources/MYMETA.json CUtils/c_sources/myrand.c CUtils/c_sources/myrand.h CUtils/c_sources/resampling.c CUtils/c_sources/resampling.h CUtils/c_sources/rhyper.c CUtils/c_sources/rhyper.h CUtils/c_sources/stats.c CUtils/c_sources/stats.h CUtils/c_sources/z.c CUtils/c_sources/z.h CUtils/const-c.inc CUtils/const-xs.inc CUtils/CUtils.xs CUtils/fallback/const-c.inc CUtils/fallback/const-xs.inc CUtils/lib/ALTree/CUtils.pm CUtils/Makefile.PL CUtils/MYMETA.json CUtils/ppport.h CUtils/t/ALTree-CUtils.t CUtils/t/double_permutation.t Documentation/fig/altree-q.fig Documentation/fig/anc_outg.fig Documentation/fig/association_paml.fig Documentation/fig/association_paup.fig Documentation/fig/association_phylip.fig Documentation/fig/create_file_paup.fig Documentation/fig/create_file_phy.fig Documentation/fig/localisation_paml.fig Documentation/fig/localisation_paup.fig Documentation/fig/option_b.fig Documentation/fig/option_b.subfig Documentation/fig/overview.fig Documentation/Makefile Documentation/manual.tex Documentation/stage.bib Makefile.PL MANIFEST This list of files MYMETA.json progs/altree progs/altree-add-S progs/altree-convert README t/ALTree.t test/create_file/paup_file/caco.phase test/create_file/paup_file/caco.phase.out test/create_file/paup_file/caco.phase.out_freqs test/create_file/paup_file/caco.phase.out_monitor test/create_file/paup_file/caco.phase.out_pairs test/create_file/paup_file/caco.phase.out_recom test/create_file/paup_file/caco.prepaup test/create_file/paup_file/create_file test/create_file/paup_file/nb_cas_control.txt test/create_file/phy-paml_file/create_file test/create_file/phy-paml_file/fam19_0 test/create_file/phy-paml_file/fam19_0.gm test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt test/create_file/phy-paml_file/nb_cas_control.txt test/create_file/phy-paml_file/NUM test/create_file/phy-paml_file/trio.fmh test/create_file/phy-paml_file/trio.phy test/create_file/phy-paml_file/trio.prephy test/paml/tree_building_using_phyML/run_phyML test/paml/tree_building_using_phyML/trio2.phy test/paml/tree_building_using_phyML/trio2.phy_phyml_lk.txt test/paml/tree_building_using_phyML/trio2.phy_phyml_stat.txt test/paml/tree_building_using_phyML/trio2.phy_phyml_tree.txt test/paml/unrooted_absent/association/1_trio_ML.asso test/paml/unrooted_absent/association/2base.t test/paml/unrooted_absent/association/baseml.ctl test/paml/unrooted_absent/association/lnf test/paml/unrooted_absent/association/mlb test/paml/unrooted_absent/association/nb_cas_control.txt test/paml/unrooted_absent/association/rst test/paml/unrooted_absent/association/rst1 test/paml/unrooted_absent/association/rub test/paml/unrooted_absent/association/run_altree test/paml/unrooted_absent/association/trio2.phy test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt test/paml/unrooted_present/association/1_trio_ML.asso test/paml/unrooted_present/association/2base.t test/paml/unrooted_present/association/baseml.ctl test/paml/unrooted_present/association/lnf test/paml/unrooted_present/association/mlb test/paml/unrooted_present/association/nb_cas_control.txt test/paml/unrooted_present/association/rst test/paml/unrooted_present/association/rst1 test/paml/unrooted_present/association/rub test/paml/unrooted_present/association/run_altree test/paml/unrooted_present/association/trio2.phy test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt test/paml/unrooted_present/localisation/2base.t test/paml/unrooted_present/localisation/baseml.ctl test/paml/unrooted_present/localisation/et_trio2.phy test/paml/unrooted_present/localisation/lnf test/paml/unrooted_present/localisation/mlb test/paml/unrooted_present/localisation/nb_cas_controls.txt test/paml/unrooted_present/localisation/rst test/paml/unrooted_present/localisation/rst1 test/paml/unrooted_present/localisation/rub test/paml/unrooted_present/localisation/run-prog test/paml/unrooted_present/localisation/trio2.loc test/paml/unrooted_present/localisation/trio2.phy test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt test/paup/ancestor_absent/association/1_caco.asso test/paup/ancestor_absent/association/caco.paup test/paup/ancestor_absent/association/nb_cas_control.txt test/paup/ancestor_absent/association/run_altree test/paup/ancestor_absent/association/test.res.log test/paup/ancestor_absent/association/test.tree test/paup/ancestor_absent/localisation/caco.loc test/paup/ancestor_absent/localisation/caco.paup test/paup/ancestor_absent/localisation/et_caco.paup test/paup/ancestor_absent/localisation/nb_cas_control.txt test/paup/ancestor_absent/localisation/run-prog test/paup/ancestor_absent/localisation/test.res.log test/paup/ancestor_absent/localisation/test.tree test/paup/ancestor_present/association/1_caco.asso test/paup/ancestor_present/association/caco.paup test/paup/ancestor_present/association/nb_cas_control.txt test/paup/ancestor_present/association/run_altree test/paup/ancestor_present/association/test.res.log test/paup/ancestor_present/association/test.tree test/paup/ancestor_present/localisation/caco.loc test/paup/ancestor_present/localisation/caco.paup test/paup/ancestor_present/localisation/et_caco.paup test/paup/ancestor_present/localisation/nb_cas_control.txt test/paup/ancestor_present/localisation/run-prog test/paup/ancestor_present/localisation/test.res.log test/paup/ancestor_present/localisation/test.tree test/paup/outgr_absent/association/1_caco.asso test/paup/outgr_absent/association/caco.paup test/paup/outgr_absent/association/nb_cas_control.txt test/paup/outgr_absent/association/run_altree test/paup/outgr_absent/association/test.res.log test/paup/outgr_absent/association/test.tree test/paup/outgr_absent/localisation/caco.loc test/paup/outgr_absent/localisation/caco.paup test/paup/outgr_absent/localisation/et_caco.paup test/paup/outgr_absent/localisation/nb_cas_control.txt test/paup/outgr_absent/localisation/run-prog test/paup/outgr_absent/localisation/test.res.log test/paup/outgr_absent/localisation/test.tree test/paup/outgr_present/association/1_caco.asso test/paup/outgr_present/association/caco.paup test/paup/outgr_present/association/nb_cas_control.txt 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test/phylip/outgroup_present/association/outfile test/phylip/outgroup_present/association/outtree test/phylip/outgroup_present/association/run_altree test/phylip/outgroup_present/association/trio.phy META.yml Module YAML meta-data (added by MakeMaker) META.json Module JSON meta-data (added by MakeMaker) altree-v1.3.1/bash_completion0000644000175000017500000000563712043315246016420 0ustar vdanjeanvdanjean#shopt -s extglob _altree_option_list() { "${COMP_WORDS[0]}" --help 2> /dev/null | \ sed -e '0,/^Options/d;/^ --/{s/^ //;s/^--\(man\|help\).*/--\1/;p};d' } _altree() { local cur prev cmd opts i lopt # options with argument local OLD_IFS="$IFS" IFS=' ' local options_full=($(_altree_option_list)) IFS="$OLD_IFS" local options_noarg=(${options_full[@]##* *}) #echo "options_noarg=${options_noarg[@]}" options_noarg=(${options_noarg[@]//"|"/" -"}) #echo "options_noarg=${options_noarg[@]}" local options=(${options_full[@]// */}) options=(${options[@]//"|"/" -"}) #echo "options=${options[@]}" IFS="|" local pat_options="${options[*]}" local pat_options_noarg="${options_noarg[*]}" IFS="$OLD_IFS" #echo "pat_options=$pat_options" COMPREPLY=() cur="$2" prev="$3" local loaded_options=() for (( i=1; $i<$COMP_CWORD; i++ )); do if [[ ${COMP_WORDS[i]} == @($pat_options) ]]; then loaded_options[${#loaded_options[@]}]=${COMP_WORDS[i]} if [[ ${COMP_WORDS[i]} != @($pat_options_noarg) ]]; then i=$(( $i + 1 )) fi fi done local options_full_r=(${options_full[@]/ *}) #echo "options_full_r=${options_full_r[@]}" for lopt in "${loaded_options[@]}"; do #echo "lopt=$lopt" options_full_r=(${options_full_r[@]##$lopt*}) options_full_r=(${options_full_r[@]##*"|${lopt/-}"*}) done #echo "options_full_r=${options_full_r[@]}" local options_r=(${options_full_r[@]//"|"/" -"}) if [[ "$prev" == @($pat_options) && ! "$prev" == @($pat_options_noarg) ]]; then cmd="$prev" #echo ok pour $prev fi if [[ "$cur" == -* ]]; then opts="${options_r[@]}" local result local long_opts="${options_r[@]##-[^-]*}" result=$(compgen -W '$long_opts' -- "$cur") # hide small options from users, but complete them if # there is no other possible options if [ "$result" = "" ]; then result=$(compgen -W '$opts' -- "$cur") fi COMPREPLY=(${COMPREPLY[@]:-} $result) return fi if [ -z "$cmd" ]; then local long_opts="${options_r[@]##-[^-]*}" COMPREPLY=(${COMPREPLY[@]:-} $(compgen -W '$long_opts' -- "$cur")) return fi for lopt in "${options_full[@]}" last; do case "$lopt" in "$prev"*\ *) break ;; *"|${prev#-}"*\ *) break ;; esac done if [ "$lopt" = last ]; then echo "BUG, please report (with the value '$prev')" fi lopt=${lopt#* } case "$lopt" in *"|"*) # Multiple choices. Continuing... ;; *) # Stick with default bash completion return ;; esac lopt=${lopt//'"'/} lopt=${lopt//'|'/ } COMPREPLY=(${COMPREPLY[@]:-} $(compgen -W '$lopt' -- "$cur")) return } complete -o bashdefault -o default -F _altree altree 2> /dev/null \ || complete -o default -F _altree altree altree-v1.3.1/META.json0000644000175000017500000000155212252703410014734 0ustar vdanjeanvdanjean{ "abstract" : "Association and Localisation tests using phylogenetic Trees", "author" : [ "Claire Bardel " ], "dynamic_config" : 1, "generated_by" : "ExtUtils::MakeMaker version 6.66, CPAN::Meta::Converter version 2.120921", "license" : [ "perl_5" ], "meta-spec" : { "url" : "http://search.cpan.org/perldoc?CPAN::Meta::Spec", "version" : "2" }, "name" : "altree", "no_index" : { "directory" : [ "t", "inc" ] }, "prereqs" : { "build" : { "requires" : { "ExtUtils::MakeMaker" : "0" } }, "configure" : { "requires" : { "ExtUtils::MakeMaker" : "0" } }, "runtime" : { "requires" : {} } }, "release_status" : "stable", "version" : "v1.3.1" } altree-v1.3.1/Documentation/0000755000175000017500000000000012252703410016121 5ustar vdanjeanvdanjeanaltree-v1.3.1/Documentation/Makefile0000644000175000017500000000002212043315246017557 0ustar vdanjeanvdanjeaninclude LaTeX.mk altree-v1.3.1/Documentation/stage.bib0000644000175000017500000007162412043315246017720 0ustar vdanjeanvdanjean%Pour month: mettre les trois premièeres lettres du nom du mois en anglais, sans accolades ex: month=APR, % % Mettre and others au lieu de et al. % @Article{Abecasis00, author = {G R Abecasis and W O Cookson}, title = {G{O}{L}{D}--graphical overview of linkage disequilibrium}, journal = {Bioinformatics}, year = {2000}, OPTkey = {}, volume = {16}, number = {2}, pages = {182-183}, month = {Mar}, OPTnote = {}, OPTannote = {} } @Article{Almasy01, author = {L Almasy and J D Terwilliger and D Nielsen and T D Dyer and D Zaykin and J Blangero}, title = {{G}{A}{W}12: {S}imulated genome scan , sequence, and family data for a common disease}, journal = {Genet epidemiol}, year = {2001}, OPTkey = {}, volume = {21 (Suppl 1)}, OPTnumber = {}, pages = {S332--S338}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Akey01, author = {J Akey and L Jin and M Xiong}, title = {Haplotypes \textit{vs} single marker linkage disequilibrium tests: what do we gain?}, journal = {European J of Hum Genet}, year = {2001}, OPTkey = {}, volume = {9}, OPTnumber = {}, pages = {291--300}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Bader01, author = {J S Bader}, title = {The relalative power of {S}{N}{P}S and haplotype as genetic markers for association tests}, journal = {Pharmacogenomics}, year = {2001}, OPTkey = {}, volume = {2}, number = {1}, pages = {11--24}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Bardel05, author = {C Bardel and V Danjean and J P Hugot and P Darlu and E G\'enin }, title = {On the use of haplotype phylogeny to detect disease susceptibi lity loci}, journal = {BMC Genetics}, year = {2005}, OPTkey = {}, volume = {6}, number = {24}, OPTpages = {}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } % 0370475 (JID) @Article{Becker04, Author= {Tim Becker and Michael Knapp}, Title= {A powerful strategy to account for multiple testing in the context of haplotype analysis}, Journal= {Am J Hum Genet}, Year= {2004}, Volume= {75}, Number= {4}, Pages= {561-570}, Month= {Oct} } @PhdThesis{these:Bourgain, author = {Bourgain C}, title = {Intérêt des populations à effet fondateur pour la recherche de facteurs de risques génétiques des maladies multifactorielles}, school = {Université {P}aris {XI}}, year = {2001}, OPTkey = {}, OPTtype = {}, OPTaddress = {}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Bourgain00, author = {C Bourgain and E Génin and H Quesneville and F Clerget-Darpoux }, title = {Search for multifactorial disease susceptibility genes in founder populations}, journal = {Ann Hum Genet}, year = {2000}, OPTkey = {}, volume = {64}, OPTnumber = {}, pages = {255--265}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } % 0370475 (JID) @Article{Clayton99, Author={D Clayton}, Title={A generalization of the transmission/disequilibrium test for uncertain-haplotype transmission}, Journal={Am J Hum Genet}, Year={1999}, Volume={65}, Number={4}, Pages={1170-1177}, Month={Oct} } @Article{Collins97, author = {F S Collins}, title = {Preparing health professionals for the genetic revolution}, journal = {Jama}, year = {1997}, OPTkey = {}, volume = {278}, OPTnumber = {}, pages = {1285--1286}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Collins98, author = {F S Collins and L D Brooks and A Chakravarti}, title = {{A} {DNA} polymorphism discovery resource for research on human genetic variation}, journal = {Genome Res}, year = {1998}, OPTkey = {}, volume = {8}, OPTnumber = {}, pages = {1229--1231}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Cordell02, author = {H J Cordell and D G Clayton}, title = {A unified stpwise regression procedure for evaluating the relative effects of polymorphisms within a gene using case/control or family data: application to HLA in type {I} diabetes}, journal = {Am J Hum Genet}, year = {2002}, OPTkey = {}, volume = {70}, OPTnumber = {}, pages = {124--141}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Culverhouse02, author = {R Culverhouse and B K Suarez and J Lin and T Reich}, title = {A perspective on epistasis: limits of models displaying no main effect}, journal = {Am J Hum Genet}, year = {2002}, OPTkey = {}, volume = {70}, OPTnumber = {}, pages = {461--471}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Misc{genehunter, OPTkey = {}, author = {M J Daly and L Kruglyak and S Pratt and N Houstis and M P Reeve and A Kirby and E S Lander}, title = {Genehunter, version 2.1}, OPThowpublished = {}, OPTmonth = {}, year = {2001}, OPTnote = {available at \url{http://www.fhcrc.org/labs/kruglyak/Downloads/index.html}}, OPTannote = {} } @Article{darlugenin, author = {P Darlu and E Génin}, title = {Cladistic analysis of haplotypes as an attempt to detect disease susceptibility.}, journal = {Genet Epidemiol}, year = {2001}, OPTkey = {}, volume = {21 (Suppl.1)}, OPTnumber = {}, pages = {S602--S607}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Douglas01, author = {J A Douglas and M Boehnke and E Guillanders and J M Trent and S B Gruber}, title = {Experimentally-derived haplotyes substantially increase the efficiency of linkage disequilibrium studies}, journal = {Nat Genet}, year = {2001}, OPTkey = {}, volume = {28}, OPTnumber = {}, pages = {361--364}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Dubertret04, author = {C Dubertret and L Gouya and N Hanoun and J-C Deybach and J Hadès and M Hamon and P Gorwood}, title = {The 3' region of the DRD2 gene is involved in genetic susceptibility to schizophrenia}, journal = {Schizophr Res}, year = {2004}, OPTkey = {}, volume = {67}, OPTnumber = {}, pages = {75-85}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Durrant04, author = {C Durrant and K T Zondervan and L R Cardon and S Hunt and P Deloukas and A P Morris}, title = {Linkage disequilibrium mapping via cladistic analysis of single-nucleotique polymorphism haplotypes}, journal = {Am J Hum Genet}, year = {2004}, OPTkey = {}, volume = {75}, OPTnumber = {}, pages = {35-43}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Fallin01, author = {D Fallin and A Cohen and L Essioux and I Chumakov and M Blumenfeld and D Cohen and N J Schork}, title = {Genetic analysis of case/control data using estimated haplotype frequencies: application to {A}{P}{O}{E} locus variation and Alzheimer's {D}isease}, journal = {Genome Res}, year = {2001}, OPTkey = {}, volume = {11}, OPTnumber = {}, pages = {143--151}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @InBook{Felsenstein, author = {J Felsenstein}, ALTeditor = {}, title = {Inferring phylogenies}, chapter = {Chapter one: Parsimony methods}, publisher = {Sinauer Associates, Inc.}, year = {2004}, OPTkey = {}, OPTvolume = {}, OPTnumber = {}, OPTseries = {}, OPTtype = {}, OPTaddress = {}, OPTedition = {}, OPTmonth = {}, pages = {1--18}, note = {ISBN:0878931775}, OPTannote = {} } @Misc{Felsenstein04, OPTkey = {}, author = {J Felsenstein}, title = {PHYLIP (Phylogeny Inference Package) version 3.6}, howpublished = {\url{http://evolution.genetics.washington.edu/phylip.html}}, OPTmonth = {}, year = {2004}, note = {Distributed by the author. Department of Genome Sciences, University of Washington, Seattle}, OPTannote = {} } @Article{Gabriel02, author = {S B Gabriel and S F Scaffner and H Nguyen and J M Moore and J Roy and B Blumenstiel and J Higgins and M De{F}elice and A Lochner and M Faggart and S N Liu-{C}ordero and C Rotimi and A Adeyamo and R Cooper and R Ward and E S Lander and M J Daly and D Altshuler}, title = {The structure of haplotype blocks in the human genome}, journal = {Science}, year = {2002}, OPTkey = {}, volume = {296}, OPTnumber = {}, pages = {2225--2229}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Ge03, author = {Y Ge and S Dudoit and T P Speed}, title = {Resampling-based multiple testing for microarray data analysis}, journal = {Test}, year = {2003}, OPTkey = {}, volume = {12}, OPTnumber = {}, pages = {1-77}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Guindon03, author = {S Guindon and O Gascuel}, title = {A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood}, journal = {Syst biol}, year = {2003}, OPTkey = {}, volume = {52}, OPTnumber = {5}, pages = {696-704}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Misc{treevolve, OPTkey = {}, author = {N C Grassly and A Rambaut}, title = {Treevolve, version 1.32}, OPThowpublished = {}, OPTmonth = {}, year = {2000}, OPTnote = {available at \url{http://evolve.zoo.ox.ac.uk/software/Treevolve/main.html} }, OPTannote = {} } @Article{haviland, author = {M B Haviland and A M Kessling and J Davignon and C F Sing}, title = {Cladistic analysis of the {A}polipoprotein \texttt{AI-CIII-AIV} gene cluster using a healthy {F}rench {C}anadian sample. {I}. {H}aploid analysis.}, journal = {Ann Hum Genet}, year = {1995}, OPTkey = {}, volume = {59}, OPTnumber = {}, pages = {211--231}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Heng00, author = {C K Heng and P S Low}, title = {Cladistic analysis: its application in association studies of complex diseases}, journal = {Ann Acad Med Singapore}, year = {2000}, OPTkey = {}, volume = {29}, OPTnumber = {}, pages = {313--321}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Hugot01, author = {J P Hugot and M Chamaillard and H Zouali and S Lesage and J P C\'ezard and J Belaiche and S Almer and C Tysk and C A O'Morain and M Gassull and V Binder and Y Finkel and A Cortot and R Modigliani and P Laurent-Puig and C Gower-Rousseau and J Macry and J F Colombel and M Sahbatou and G Thomas}, title = {Association of {N}{O}{D}2 leucin-rich repeat variants with susceptibility to {C}rohn's disease}, journal = {Nature}, year = {2001}, OPTkey = {}, volume = {411}, OPTnumber = {}, pages = {599--603}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Jannot03, author = {A S Jannot and L Essioux and MG Reese and F Clerget-Darpoux}, title = {Improved use of {S}{N}{P} information to detect the role of genes}, journal = {Genet Epidemiol}, year = {2003}, OPTkey = {}, volume = {25}, OPTnumber = {}, pages = {158--67.}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } % 100897350 (JID) @Article{Judson01, Author={R Judson and J C Stephens}, Title={Notes from the SNP vs. haplotype front}, Journal={Pharmacogenomics}, Year={2001}, Volume={2}, Number={1}, Pages={7-10}, Month={Feb} } @Book{livre:Kaplan, author = {J C Kaplan and M Delpech}, ALTeditor = {}, title = {Biologie moléculaire et médecine}, publisher = {Médecines-{S}ciences, {F}lammarion}, year = {1993}, OPTkey = {}, OPTvolume = {}, OPTnumber = {}, OPTseries = {}, OPTaddress = {}, edition = {2ème}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } % 8411723 (JID) @Article{Kaplan01, Author={N Kaplan and R Morris}, Title={Issues concerning association studies for fine mapping a susceptibility gene for a complex disease}, Journal={Genet Epidemiol}, Year={2001}, Volume={20}, Number={4}, Pages={432-457}, Month={May} } @Article{Keavney98, author = {B Keavney and C A McKenzie and J M C Connell and C Julier and P J Ratcliffe and E Sobel and M Lathrop and M Farrall}, title = {Measured haplotype analysis of the angiotensin-{I} converting enzyme gene}, journal = {Hum Mol Genet}, year = {1998}, OPTkey = {}, volume = {7}, number = {11}, pages = {1745--1751}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{kittles, author = {R A Kittles and J C Long and A W Bergen and M Eggert and M Virkkunen and M Linnoila and D Goldman}, title = {Cladistic association analysis of {Y} chromosome effects on alcohol dependence and related personality traits}, journal = {Proc Natl Acad Sci}, year = {1999}, OPTkey = {}, volume = {96}, OPTnumber = {}, pages = {4204--4209}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Lazzeroni98, author = {L C Lazzeroni}, title = {Linkage disequilibrium and gene mapping: an empirical least-square approach}, journal = {Am J Hum Genet}, year = {1998}, OPTkey = {}, volume = {62}, OPTnumber = {}, pages = {159-170}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{crohn, author = {S Lesage and H Zouali and J P Cezard and the EPWG-IBD group and J F Colombel and the EPIMAD group and J Belaiche and the GETAID group and S Almer and C Tysk and C O'Morain and M Gassull and V Binder and Y Finkek and R Modigliani and C Gower-Rousseau and J Macry and F Merlin and M Chamaillard and A S Jeannot and G Thomas and JP Hugot}, title = {{C}{A}{R}{D}15/{N}{O}{D}2 Mutational analysis and genotype-phenotype correlation in 612 patients with inflammatory bowel disease}, journal = {Am J Hum Genet}, year = {2002}, OPTkey = {}, volume = {70}, OPTnumber = {}, pages = {000--000}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{LobosetTodd, author = {E A Lobos and R D Todd}, title = {Cladistic analysis of disease association with tyroxine hydroxylase : {A}pplication to manic-depressive disease and alcoholism.}, journal = {Am J Med Genet}, year = {1997}, OPTkey = {}, volume = {74}, OPTnumber = {}, pages = {289--295}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Lobos98, author = {EA Lobos and R D Todd}, title = {Association analysis in an evolutionary context: cladistic analysis of the {D}{R}{D}2 locus to test for association with alcoholism}, journal = {Am J Med Genet}, year = {1998}, OPTkey = {}, volume = {81}, OPTnumber = {}, pages = {411--419}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } % 9518021 (JID) @Article{Long99, Author={A D Long and C H Langley}, Title={The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits}, Journal={Genome Res}, Year={1999}, Volume={9}, Number={8}, Pages={720-731}, Month={Aug} } @Article{McPeek99, author = {M S McPeek and A Strahs}, title = {Assessment of linkage disequilibrium by the decay of haplotype sharing with application to fine-scale genetic mapping}, journal = {Am J Hum Genet}, year = {1999}, OPTkey = {}, volume = {65}, OPTnumber = {}, pages = {858-875}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Book{livrestathiguet, author = {A E Maxwell}, ALTeditor = {}, title = {Analysing 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\usepackage{float} % Pour le positionnement H de figure \usepackage{vmargin} % \usepackage{url} % \usepackage{amsmath} \usepackage{threeparttable} % pour les notes dans les tables \usepackage[square]{natbib} \usepackage{lscape} \usepackage{placeins} \usepackage{fancyhdr} \usepackage{url} \usepackage{setspace} \usepackage{alltt} \usepackage{tabularx} \sloppy %\doublespacing %%%%%%%%%%%%%%%%% COMMANDES %%%%%%%%%%%%%%%%%%%%%%%%%%%%% \newcommand{\mysinglespace}{\def\baselinestretch{1.1}} \newcommand{\mydoublespace}{\def\baselinestretch{1.6}} \newcommand{\treevolve}{\texttt{TREEVOLVE}\xspace} \newcommand{\phase}{\texttt{phase}\xspace} \newcommand{\famhap}{\texttt{FamHap}\xspace} \newcommand{\paup}{\texttt{paup}\xspace} \newcommand{\phylip}{\texttt{phylip}\xspace} \newcommand{\paml}{\texttt{paml}\xspace} %TODO est-ce que phyml s'écrit comme ça ? \newcommand{\phyml}{\texttt{phyml}\xspace} \newcommand{\altree}{\texttt{ALTree}\xspace} \renewcommand{\thetable} {\rm\Roman{table}} \renewcommand{\thefigure} {\rm\Roman{figure}} \newcommand{\newchitree}{\texttt{ALTree}\xspace} \newcommand{\etHTname}{altree-add-S} \newcommand{\etHT}{\texttt{ALTree-add-S}\xspace} \newcommand{\rechaploname}{altree-convert} \newcommand{\rechaplo}{\texttt{ALTree-convert}\xspace} \newcommand{\acctran}{\texttt{acctran}\xspace} \newcommand{\deltran}{\texttt{deltran}\xspace} \newcommand{\chisquare}{chi-square\xspace} \newcommand{\chisquares}{chi-squares\xspace} \newcommand{\cmd}[1]{\textit{#1}} \newcommand{\fn}[1]{\textbf{#1}} \newcommand{\prog}[1]{\texttt{#1}} \newcommand{\code}[1]{\texttt{#1}} \newcommand{\ucode}[1]{\code{\textit{#1}}} \newcommand{\ccode}[1]{\code{\textbf{#1}}} \newcommand{\commande}[1]{\texttt{#1}} \newenvironment{source}{% \begin{alltt}% }{% \end{alltt}% } \newenvironment{options}[1][l]{% \noindent% \bgroup% \newcommand{\option}[2]{% \code{##1}& ##2 \\% } \tabularx{\linewidth}{@{}#1X@{}} }{% \endtabularx \egroup% } %%%%%%%%%%%%%%%%% \begin{document} \pagestyle{empty} \pagestyle{myheadings} \title{ALTree: Association and Localisation tests using haplotype phylogenetic Trees } \author{Claire Bardel, Vincent Danjean, Pierre Darlu and Emmanuelle Génin} \date{Version 1.2} \maketitle \tableofcontents \chapter{Introduction} \section{What's new?} \paragraph{Problem with PAUP*} It seems that PAUP* does not run anymore on recent versions of Linux. We have not tested windows or MacOS version. If PAUP* does not work on your system, example files using PAUP* (in the paup directory) will not run because PAUP* output files will not be produced. \paragraph{Version 1.1.0: modification of \newchitree and \etHT to deal with quantitative data} The software now deals with quantitative data. For the association test, series of one-way ANOVA are performed instead of the homogeneity tests. For the localisation test, only the definition of the S character is different for quantitative traits. Currently, \rechaplo has not been modified and does not deal with quantitative data. \section{Overview of the software} This software is designed to perform phylogeny-based analysis: first, it allows the detection of an association between a candidate gene and a disease or a quantitative trait, and second, it enables us to make hypothesis about the susceptibility loci. %\section{Copyright} It contains three programs: \newchitree, \rechaplo and \etHT. The connections between these programs are described in Figure~\ref{fig:altree} %\section{Short description of the programs available in \altree} \begin{figure}[htbp] \includegraphics[width=\linewidth]{overview.fig}\centering \caption{\altree programs} \label{fig:altree} \end{figure} This program is copyrighted (c) by Claire Bardel and Vincent Danjean and is distributed under the GNU General Public License. You are free to re-distribute it under the same license. This software comes with no warranty whatsoever. If you encounter any problem, please, send a bug report to Claire Bardel at the following e-mail: Claire.Bardel@univ-lyon1.fr %The complete text of the GNU General Public %License can be found in the annexe~\ref{GPL} on page~\pageref{GPL}. \subsection{\newchitree} \subsubsection{Association test} The test consists in performing series of nested tests at different level of a phylogenetic tree. These tests compare either the number of cases and controls (for case/control data) in the different groups (or clades) defined on the tree or the variance of the trait within each clade to the variance between these different clades (for quantitative data). The nested algorithm is detailed on Figure~\ref{fig:nesting_algo} (figure from \citet{Bardel05}, slightly modified). Then, a global p-value is calculated for the tree by using a permutation procedure such as the one described by \citet{Ge03} and \citet{Becker04}. \begin{figure}[h] \begin{center} \includegraphics[width=0.8\linewidth]{altree-q.fig} \caption{Description of the nested clade analysis (without the permutation procedure)} \label{fig:nesting_algo} \end{center} \vspace{-0.4cm} {\small (A) shows the homogeneity test or the ANOVA performed at level k (between clades $C_1$ and $C_2$). Then (B), a test will be performed at the following level (k+1), between all the sub-clades descending from clades $C_1$ and $C_2$, i.e between clades $C_{1.1}$, $C_{1.2}$, $C_{2.1}$ and $C_{2.2}$. % If it is % significant the analysis ends because an association is detected. % When the permutation procedure is used, all the tests are considered % as non significant and the p-values are evaluated \textit{a posteriori}. } \end{figure} \subsubsection{Localisation of the susceptibility loci} To perform the localisation analysis, for each haplotype $h$, the user must previously define a new character (called character $S$) whose state depends on the proportion of cases (resp. individual with high quantitative trait values) carrying haplotype $h$ and optimise it on the haplotype phylogeny. The program \newchitree then looks for sites that co-mutates with the character $S$ by calculating a co-mutation index called $V_{i}$ for each site $i$ and for each character state transition ($0 \rightarrow 1$ for example). The higher the $V_{i}$, the higher the probability of $i$ being the susceptibility site. \bigskip The method implemented in \newchitree has been fully described in~\citet{Bardel05}. Please refer to this article for a more complete description. \subsection{\rechaplo} Before running \newchitree, you will generally have to reconstruct haplotypes %(see section \ref{sec:require} for a description of usable %programs). The output of the haplotype reconstruction programs are totally different from the input files necessary for the phylogenetic reconstruction programs. \rechaplo was then written to convert the outputs of haplotype reconstruction programs to input files for phylogenetic reconstruction programs. It may be particularly useful if you want to use \paup because \paup has a very high number of options. If you use \rechaplo, an input file with all the options necessary to further run \newchitree is produced. Currently, \rechaplo can deal with two haplotype reconstruction programs: \phase~\citep{Stephens01, Stephens03} and \famhap~\citep{Becker04} and can produce files for three phylogeny reconstruction programs: \paup~\citep{Swofford02}, \phylip~\citep{Felsenstein04} and \paml~\citep{YangPAML}. \subsection{\etHT}\label{description_etiquette} \enlargethispage{1cm} To perform the localisation analysis, a new character $S$ must be added to each haplotype $h$. The state of $S$ depends on the proportion of cases (resp. individual with high quantitative trait values) carrying the haplotype $h$. You can use your own criterion to determine the state of $S$ and add it manually to the input file of the phylogeny reconstruction program that will optimise the character states changes on the tree. If you do not want to add the character $S$ manually, you can use \etHT. For case/control data, the state of the character $S$ is allocated depending on the proportion ($p_h$) of cases carrying the haplotype $h$ compared to the proportion $p_0$ of cases in the whole sample. \begin{itemize} \item if $p_h < p_0-\epsilon\sqrt{\frac{p_h\times(1-p_h)}{n_h}}$, $S$ is coded ``C'' or ``0'' (high number of controls); \item if $p_h > p_0+\epsilon\sqrt{\frac{p_h\times(1-p_h)}{n_h}}$, $S$ is coded ``G'' or ``1'' (high number of cases); \item else, $S$ is coded ``?'' (undetermined). \end{itemize} with $n_h$ being the number of individuals carrying the haplotype $h$. For quantitative data, the state of ``S'' depends on the mean of the quantitative trait in a given branch of the tree $\mu$, the mean of the quantitative trait in the whole data set $\mu_0$ and the standard deviation of the quantitative trait in the whole data set, $\sigma_0$. \begin{itemize} \item if $\mu> \mu_0 + \epsilon \times \displaystyle{\frac{\sigma_0}{\sqrt{n}}}\quad$ ``S'' is coded ``H'' (high level); \item if $\mu< \mu_0 - \epsilon \times \displaystyle{\frac{\sigma_0}{\sqrt{n}}}\quad$ ``S'' is coded ``L'' (low level); \item else, ``S'' is coded ``?'' (undetermined) \end{itemize} $n$ being the sample size, and $\epsilon$, an inflation coefficient to be chosen by the user. \subsection{Computation time (in 2005)} We measured the computation time on a Pentium III, 930 MHz, 512 Mo of RAM. We used a data set of 363 individuals (cases and controls) genotyped for 7 SNPs defining 33 different haplotypes. The reconstructed phylogenetic tree had 6 levels. On this data set, the association test runs in about 24 hours (p-value evaluated by 100~000 permutations, the complexity of the program being linear with respect to the number of permutations). The localisation test runs in about 10 seconds (2~000 equiparsimonious trees analysed, the complexity of the program being linear with respect to the number of analysed trees). In fact, for the association test, the computation time increases with the number of permutation and with the number of levels in the tree (the number of levels being tightly linked to the number of haplotypes in the data sets, which depends on the number of SNPs and of the LD between the SNPs). We tested the software for up to 1000 SNPs corresponding to 417 haplotypes. In this case, the association test runs in about 6 minutes (for one permutation only). Three to four minutes should be added per supplementary permutation. With such a data set, we can see that the evaluation of the p-values with the permutation procedure (10~000 to 100~000 are required) is not realistic on this kind of computer. However, the software can be used to look for association without using the permutation procedure. The localisation test runs very quickly and depends on the number of equiparsimonious trees analysed. On the data set with 1000 SNPs, the localisation test runs in 10 seconds for one tree. \chapter{Installing the software} The software can run on various Linux/Unix platform. %and on MacOS X. \section{Requirements} \label{sec:require} \subsection{Phylogeny reconstruction programs} Before using \altree, you must build a phylogeny of the haplotypes. Three phylogeny software are compatible with our program: \begin{itemize} \item \paup~\cite{Swofford02}: available at \url{http://paup.csit.fsu.edu/}. This software is not free software and must be purchased (100\$ for the unix version). \item \phylip~\cite{Felsenstein04}: freely available at \url{http://evolution.genetics.washington.edu/phylip.html} (only usable for the association test) \item \paml~\cite{YangPAML}: freely available at \url{http://abacus.gene.ucl.ac.uk/software/paml.html}. As stated by its author, \paml is not good at tree making. So we advise you to use another software to build the tree (for example, \phyml~\cite{Guindon03} and then to use \paml to estimate the character states at each node. \end{itemize} \textit{\paragraph{Note:} Currently, only the outputs from the parsimony method implemented in \paup (command \texttt{set}, option \texttt{criterion} set to ``parsimony'') and in \phylip (program \texttt{mix}) are compatible with our software. If you want to use maximum likelihood (ML), we suggest you to use your favorite software to compute the ML tree and then, to use \paml to estimate the character states at each node. } \subsection{Required tools} \prog{perl} is required to run \altree. \prog{perl} version 5.8.7 or higher should work. Lower versions can work, but they have not been tested. If you want to build the program from sources, you will also need a C compiler such as \prog{gcc} and the GNU \prog{make} program. They are available on most Unix plateforms. Otherwise, a debian package containing the binary files is available.%For MacOS X, \prog{gcc} and %\prog{make} are available with other tools on the development CD of %the OS. \section{Installation on a linux platform} To install this module type the following:\\ \begin{source} perl Makefile.PL make make test make install \end{source} \noindent If you prefer to install it in your home directory, then type the following: \begin{source} perl Makefile.PL PREFIX=~ make make test make install \end{source} \noindent In this case, do not forget to add \verb+~+\prog{/bin} in your \prog{PATH} and \verb+~+\prog{/lib/perl/\textit{perl\_version}/} in \prog{PERL5LIB} if they are not already present. For example: \begin{source} PATH=~/bin:$PATH export PATH PERL5LIB=~/lib/perl/5.8.7/:$PERL5LIB export PERL5LIB \end{source} \vspace{0.5cm} %Inclure les differentes platformes sur lesquelles ça tourne.\\ %Voir avec Vince; installation des bibliothèques perl, installation de la bibliothèque C. Avec Linux, paquet debian dispo sur page Vince. Voir si on peut compiler le C pour windows et/ou macOSX. \chapter{\rechaplo } This program converts the output of the haplotype reconstruction programs to input for phylogeny reconstruction programs. Each option has a long name (which must be preceded by -{}-) and some of them also have a short name (which must be preceded by -). \section{Summary of the different options} \begin{options} \option{-{}-version}{program version} \option{-{}-short-help|-h}{brief help message} \option{-{}-help}{help message with option descriptions} \option{-{}-man}{full documentation} \option{-{}-first-input-file|-i \ucode{file}}{Input file 1} \option{-{}-second-input-file|-j \ucode{file}}{Input file 2 (not mandatory, see explanations below)} \option{-{}-output-file|-o \ucode{file}}{Output file 1} \option{-{}-case-control-output|-c \ucode{file}}{Output containing the number of cases/controls} \option{-{}-reconstruct-prog|-r \ccode{phase|famhap}}{Name of the haplotype reconstruction program} \option{-{}-phylo-prog|-p \ccode{paup|phylip}}{Name of the phylogeny reconstruction program} \option{-{}-data-type|-t \ccode{DNA|NUM}}{Type of data: DNA (ATGCU) or NUM (0-9)} \end{options} \section{How to get help?}\label{help} \subsection{option -{}-short-help or -h} This option displays a short help message which recapitulates all the options available. \subsection{option -{}-help} This option displays a message with a description of the different options. \subsection{option -{}-man} This option displays the man page for the program. \subsection{option -{}-version} This option gives the number of the version currently used. \section{Input files} This program takes as input files the output files of the haplotype recontruction programs. Currently, only \phase (for case/control data) and \famhap (for family data) output files are allowed, but we plan to extend the number of haplotype recontruction programs usable. The name of the haplotype reconstruction program used to generate the input files must be specified after the -r option. \subsection{Using \phase output file} Two different cases must be considered: \begin{itemize} \item The case-control status of each individual has been specified in the input file for phase and phase has been run with the -c-1 option. In this case only one input file is necessary for \rechaplo: the phase output file (let's call it out.phase). In this case, the program must be run like this: \\ \begin{source} \rechaploname -r \ccode{phase} -i \ucode{out.phase} -other\_options \end{source} \item The case-control status of each individual has not been specified in the input file for phase. In this case, two input files are necessary: the phase output file (out.phase) and another file which specifies the disease status for each individual (status.phase). This file consists in two rows: the first contains the individual's ID and the second, their disease status (0=control, 1=case). In this case, the program must be run like this: \\ \begin{source} \rechaploname -r \ccode{phase} -i \ucode{out.phase} -j \ucode{status.phase} -other\_options \end{source} \end{itemize} \subsection{Using \famhap output files} The program \rechaplo is designed to use files generated with \famhap15 (and not with \famhap12!), \famhap16 has not been tested yet. Two options are necessary: \begin{description} \item [dp] : to take the disease status into account in the haplotype reconstruction \item [P] : to make sure that all the haplotypes are present in the output file \end{description} Two input files are necessary for \rechaplo: the \famhap output file whose name has been chosen by the user (let's call it out.famhap), and the output file called input\_name\_H1\_HAPLOTYPES. In this case, the program must be run like this: \\ \begin{source} \rechaploname -r \ccode{famhap} -i \ucode{out.famhap} -j \ucode{H1\_HAPLOTYPES} -other\_options \end{source} \section{Output files} Two different output files are generated: \begin{description} \item [The main output file. ] Its name should follow the -o option. This file is an input file for the phylogeny reconstruction programs \paup, \paml or \phylip. \item [The second output file. ] Its name should follow the -c option. It contains the number of times a given haplotype is carried by case and control individuals. \end{description} %wo kinds of output files can be generated depending on the phylogeny %econstruction program you want to use (\paml and \phylip use the same %ype of input files). The name of the phylogeny reconstruction program should follow the -p option. \subsection{Generating \paup input files (*.paup)} The file generated is a nexus file containing the options for \paup necessary to run \newchitree after \paup. This is only an example of a paup file: we choose to root the tree using an ancestral sequence, but this is not necessary and this file should be modified according to your data. Examples of \paup input files can be found in the test directory: they are labeled *.paup. %In the output file, the name of each haplotype is formed by the %concatenation of an haplotype number (Hxxx), and of the number of %cases (mxxx) and controls (cxxx) carrying this haplotype. %A character %is added to each haplotype: its state is 2 or C for all the haplotypes %and must be set to 1 or G for the ancestral sequence. This character %is set only to be sure that the phylogeny reconstruction program %correctly draw the tree. It does not change the results of the %analysis, and it can be removed from the file. The output file is not a valid \paup input file. Some options are indicated within square brackets and must be specified by the user before running \paup: \begin{itemize} \item the sequence of the ancestral haplotype \item the maximum number of trees \paup must find \item the method to optimise character state changes (\acctran/\deltran) \item the name of the different files generated \item the number of trees described by paup in the log file (we advise you to keep all the trees, and to limit the number of trees that are analysed later, when running \newchitree). \end{itemize} The chosen option must be put out of the square brackets because \paup ignores what is written within square brackets. \subsection{Generating \phylip or \paml input files (*.phy)} The file generated is the simplest phylip (also used by \paml) format. The first line contains the number of haplotypes and the number of sites and the following lines contains an identifier for the haplotype (Hxxx) and the haplotype sequence. %A character is added to each %haplotype: its state is 0 or C for all the haplotypes and must be set %to 1 or G for the ancestral sequence. This character is set only to be sure that the phylogeny reconstruction program correctly draw the tree. It does not change the results of the analysis, and it can be removed from the file. %In this file, you must either add the sequence of the ancestral haplotype in %the file out.phylip and prepare a file named ``ancestors'' containing this %sequence (don't forget to add the character 1 at the end of the %sequence), or eliminate this sequence and modify the number of %sequences accordingly if you want to use an outgroup to root the tree. \subsection{The second output file}\label{description_correspond} The name of the second output file must follow the -c option. This file contains the number of times a given haplotype is found in cases and controls. The file format is the following: the label of each haplotype and the number of cases and controls carrying it are specified, separated by spaces or tabulations. The number of cases carrying a given haplotype is preceded by the letter ``m'' and the number of controls is preceded by the letter ``c''. Example of such a file: \\ \begin{tabular}{ccc} H002 & m015 & c001\\ H003 & m000 & c001\\ H001 & m000 & c002\\ %H000\_anc & m000 & c000\\ \end{tabular} Other examples may be found in the test directory. These files are always labeled ``nb\_cas\_control.txt''. \section{Other options} \subsection{The phylogeny reconstruction program} You must specify the name of the phylogeny reconstruction software that will be used after the option -p or -{}-phylo-prog option so that the corresponding output file can be generated. \subsection{The haplotype reconstruction program} The name of the haplotype reconstruction program (\famhap or \phase) must be specified after the option -r or -{}-recontruct-prog. \subsection{The type of data} The user must specify if the data are of type DNA (ATGC) or NUM (number from 0 to 9, for the current version of the program, numbers superior to 9 cannot be used). It must be specified after the -r option. %\subsection{Name of the main output file} %With the -o option, the user chooses the name of the output file. If -o is omitted, the standard output will be used. \chapter{\etHT} This program adds a new character (named $S$) to each haplotype corresponding to its disease status. Each option has a long name (which must be preceded by -{}-) and some of them also have a short name (which must be preceded by -). \section{Summary of the different options} \begin{options} \option{-{}-version}{program version} \option{-{}-short-help|-h}{brief help message} \option{-{}-help}{help message with option descriptions} \option{-{}-man}{full documentation} \option{-{}-first-input-file|-i \ucode{file}}{Input file 1} \option{-{}-second-input-file|-j \ucode{file}}{Input file 2: nb cases/controls per haplotype} \option{-{}-output-file|-o \ucode{file}}{Output file} %-r & Haplotype reconstruction program\\ \option{-{}-epsilon|-e \ucode{number}}{$\epsilon$ parameter} \option{-{}-data-type|-t \ccode{DNA|SNP}}{data type: SNP or DNA} \option{-{}-proportion|-p \ucode{number}}{proportion of cases in the sample} \option{-{}-data-qual|q \ccode{qualitative|quantitative}}{data type: qualitative or quantitative} \option{-{}-outgroup|-g \ucode{outgroup\_name}} {Name of the outgroup (if necessary)} \option{-{}-low|-l}{forces the state of character $S$ to be ``?'' for haplotypes carried by 1 individual} \end{options} %\section{Description} %This program use a paup input file (input.paup) as input file, and generate a new paup input file (input\_et.paup) after having added a new character S to each haplotype. % %S excluded from the reconstruction of the tree, but included for the apomorphy recontrsuction -> modif of the paup block %les 2 facon de coder le caractere S. %Pb pour 1 ind. \section{How to get help?} See the same section for the program \rechaplo (page \pageref{help}). \section{Input files } \subsection{The sequence file (-i option)} The name of the input file containing the sequences must be specified after the -i option. This input file must be a valid \paup (nexus) or \phylip/\paml input file. If it is a \paup file, make sure that the line following the description of the last haplotype in the data block includes a semi colon only. \subsection{The trait file (-j option)} The name of the file containing informations about the trait must be specified after the -j option. \begin{itemize} \item If your trait is quantitative, the file must contain haplotype labels followed by the quantitative values measured for the individuals carrying these haplotypes. or homozygous individuals, quantitative values must be repeated twice; \item If your data are qualitative, the file must contain haplotype labels folled by the number of cases and controls carrying this haplotype separated by spaces or tabulations. The number of cases should be preceded by a "m" (or the word "case", possibly followed by a "$\_$"), the number of controls should be preceded by the letter "c" (or the word "control", possibly followed by a "$\_$"). \end{itemize} Examples: \begin{minipage}{0.45\linewidth} \begin{center} \begin{tabular}{ccc} \multicolumn{3}{c}{Case/control data}\\ H002 & m12 & c5 \\ H019 & m2 & c6 \\ H007 & m54 & c78 \\ \end{tabular} \end{center} \end{minipage} \begin{minipage}{0.45\linewidth} \begin{center} \begin{tabular}{ccccc} \multicolumn{3}{c}{Quantitative data}\\ H008 & 9.54 & 11.45\\ H005 & 7.73 & 11.43 & 10.6 & 13.8\\ H018 & 8.98 \\ \end{tabular} \end{center} \end{minipage} \section{Output file (-o option)} The name of the output file can be specified after the -o option. If the -o option is not present, the standard output is used. The output file is a \paup or \paml input file. The character $S$ is coded ``G'' or ``1'' for cases or high values of the quantitative trait and ``C'' or ``0'' for controls or low values of the quantitative trait. In the \paup input file generated, a new command is added, which excludes the character $S$ from the tree reconstruction process, and includes it in the table of apomorphies. If you want to use \paml, no such command exists. We advise you to reconstruct the phylogeny on the data set without the character $S$ by using your favorite phylogeny reconstruction program. Then, you give that tree and the data-set with the S-character to \paml to obtain the apomorphie list. \section{Other options} \subsection{Proportion of cases in the sample (qualitative data only)} The proportion of cases in the sample must be specified after the -p option. \subsection{The epsilon value} It corresponds to the parameter $\epsilon$ (see the description of the program in section \ref{description_etiquette}, page \pageref{description_etiquette}). If $\epsilon$ is high, haplotypes will more often have a character $S$ coded ``?''. To give an idea, in our article~\citep{Bardel05}, $\epsilon$ was set to 1. \subsection{Data type: sequence} The -t option must be followed either by \cmd{SNP} or by \cmd{DNA}. \cmd{SNP} should be used if you have numerical data (characters coded from 0 to 9). \cmd{DNA} must be used if you have DNA data (A, T, G, C). \subsection{Data type: trait} The software can deal with qualitative data (case/control) or quantitative data. The -q (or --data-qual) option must be followed by either \cmd{qualitative} or \cmd{quantitative}, depending on your data. \subsection{Haplotypes carried by only 1 individual} The -l option is not mandatory: if it is present, $S$ is coded ``?'' for all the haplotypes present only once in the sample, whatever the disease status of the individual carrying it. If -l is not specified, the state of $S$ will be chosen according to the formula (see section \ref{description_etiquette}, page \pageref{description_etiquette}). \subsection{Name of the outgroup} If the outgroup is not specified in the file containing the number of cases an controls but is in the file containing the sequences, the name of the outgroup must be provided to \etHT so that the program can identify the outgroup sequence. For this sequence, the state of the character $S$ will be ``?''. \chapter{\newchitree} This program can perform either an association test or a localisation test. Each option has a long name (which must be preceded by -{}-) and some of them also have a short name (which must be preceded by -). \section{Summary of the different options} \begin{options}[p{.54\linewidth}] \option{-{}-version}{program version} \option{-{}-short-help|-h}{brief help message} \option{-{}-help}{help message with option descriptions} \option{-{}-man}{full documentation} \option{-{}-association|-a}{perform the association test} \option{-{}-s-localisation|-l}{perform the localisation test} \option{-{}-first-input-file|-i \ucode{file}}{output file from phylogeny program} \option{-{}-second-input-file|-j \ucode{file}}{nb cases/controls per haplotype} \option{-{}-output-file|-o \ucode{file}}{output file} \option{-{}-data-type|-t \ccode{DNA}|\ccode{SNP}}{type of data} \option{-{}-data-qual|-q \hspace*{\fill}\ccode{qualitative|quantitative}}{data type: qualitative or quantitative} \option{-{}-remove-outgroup }{remove the outgroup sequence for the analysis} \option{-{}-outgroup \ucode{outgroup\_name}}{specify the name of the outgroup sequence} \option{-{}-anc-seq \ucode{ancestral\_sequence}}{ancestral sequence (only useful with \phylip)} \option{-{}-tree-building-program|-p \hspace*{\fill}\ccode{PHYLIP}|\ccode{PAUP}|\ccode{PAML}}{phylip or paup or paml} %\option{-{}-splitmode|-s \ccode{nosplit}|\ccode{chi2split}}{} \option{-{}-no-prolongation}{no prolongation of branches} \option{-{}-chi2-threshold|-n \ucode{value}}{threshold value} \option{-{}-permutations|-r \ucode{number}}{number of permutations to perform} \option{-{}-number-of-trees-to-analyse \ucode{number}}{total number of trees to analyse} \option{-{}-tree-to-analyse \ucode{number}}{number of the tree to analyse} \option{-{}-s-site-number \ucode{number}}{position of the $S$ character in the sequence} \option{-{}-s-site-characters \hspace*{\fill}\ucode{anc\_state}\ccode{->}\ucode{der\_state}}{ancestral state -> derived state for $S$} \option{-{}-co-evo|-e \ccode{simple}|\ccode{double}}{simple or double} \option{-{}-print-tree}{print the tree with the character state changes in the output file} \end{options} \section{How to get help?} See the same section for the program \rechaplo (page \pageref{help}). \section{General options} These options are used both for association and for localisation test. \subsection{First input file (option -{}-first-input-file or -i)} This file is the output file of the phylogeny reconstruction program. \subsubsection{If \paup is used} To run \newchitree, some informations must be present in the input file for \newchitree (=output file of \paup). In particular, the apomorphy list and a table contining branch lengths must be present (though branch lengths are not taken into account in the analysis, they are juste used to check if they are consistent with the apomorphy list). For these information to be present, in the \cmd{describetrees} command you must use the following options: \cmd{brlens=yes} and \cmd{apolist=yes}. Examples of \paup input files containing the options necessary to run \newchitree are provided in the \code{test/paup} directory. These files are labeled \fn{*.paup}. \subsubsection{If \phylip is used} The input file for \newchitree is the output file named ``outfile'' by \phylip. Currently, \newchitree only works with output data from the program \texttt{MIX} (0/1 data). We plan to adapt it to other reconstruction program. To generate a correct input file for \newchitree, you must use different options for \phylip depending on your rooting method: \begin{itemize} \item If you want to root the tree using an outgroup: you must root the tree on the chosen outgroup by using the option \cmd{o}. \item If you want to root the tree using the ancestral character states: you have to prepare a file named \fn{ancestors} containing the ancestral sequence. Then, when running \phylip, you must use the option \cmd{a} (see the \phylip manual for more information).\\ %To run \newchitree, the ancestral sequence must be present in the sample, so we advise you to root the tree using this ancestral sequence as outgroup by using the option \cmd{o}. \\ % In this case, you will have to use the option ``-{}-anc-seq'' when running \newchitree. \end{itemize} Moreover, the states at all nodes of the tree must appear in the output file, so you must set the option \cmd{5} to \cmd{yes}. \subsubsection{If \paml is used} The input file for \newchitree is the output file named ``rst'' by \paml. \subsection{The trait input file (option -{}-second-input-file or -j)} If you analyze case/control data, this input file consists in lines containing the label of each haplotype followed by the number of cases and controls carrying it separated by spaces or tabulations. The number of cases should be preceded by a ``m``(or the word ``case'', possibly followed by a ``\_''), the number of controls should be preceded by the letter ``c'' (or the word ``control'', possibly followed by a ``\_'').\\ Example of such files are given in the test directory. These files are always labeled \fn{nb\_cas\_control.txt}. If your trait is quantitative, the file must contain haplotype labels followed by the quantitative values measured for the individuals carrying these haplotypes. or homozygous individuals, quantitative values must be repeated twice. \subsection{Output file (option -{}-output-file or -o)} You can choose the name of the output file by using the -{}-output-file or -o option. If this option is not specified, the standard output is used. \subsection{Name of the phylogeny program used (option -{}-tree-building-program or -p )} After the option -p, you must specify which phylogeny reconstruction program (\paup, \phylip or \paml) was used to generate the first input file. \subsection{Data type: sequence (option -{}-data-type or -t)} The option -t must be followed either by \cmd{SNP} or by \cmd{DNA}. \cmd{SNP} should be used if you have numerical data (from 0 to 9). \cmd{DNA} must be used if you have DNA data (A, T, G, C). Warning: the DNA option currently does not work if you have reconstructed the phylogeny with phylip. \subsection{Data type: trait (option -{}-data-qual or -q)} The software can deal with qualitative data (case/control) or quantitative data. The -q (or ­{}-data-qual) option must be followed by either qualitative or quantitative, depending on your data. \subsection{Print tree (option -{}-print-tree)} If this option is specified, the tree with the character state changes along the branches will be written in the output file. It may especially be useful when you are performing the localisation analysis, because in this case, the tree is not written in the output file by default. \textit{Warning: if several trees are analysed, with the -{}-print-tree option, they will \emph{all} be printed in the output file.} \section{Association test (option -{}-association or -a)} When the -a option is used, the program will perform the phylogeny-based association test. \subsection{Options specific to the association test} %\subsubsection{Root method (-{}-root-method)} %To perform the association test, the tree must be rooted. Depending on your data, you may want to root either on an ancetral sequence (-{}-root-method ancestor) or on an outgroup (-{}-root-method outgroup). %\begin{center} %%\begin{boxedminipage}[width=0.5\linewidth] %\includegraphics[width=0.45\linewidth]{anc_outg.fig} %%\end{boxedminipage} %\end{center} %\subsubsection{Name of the root (-{}-root)} %This option must be followed by the name of the sequence you choose to root the tree (either the outgroup or the ancestor). \subsubsection{Removing the outgroup (option -{}-remove-outgroup)} The outgroup may either be a sequence of the sample for which the number of cases and controls carrying it is defined or a sequence for which we don't have any cases or controls (for example, an ape sequence). In this last case, the outgroup must be removed from the sample before the analysis. It is possible by specifying the option -{}-remove outgroup. \subsubsection{Name of the outgroup (option -{}-outgroup)} This option will be useful in two cases: \begin{itemize} \item If you work on an unrooted tree (with \paml or \paup): for the association test, the tree \emph{must be rooted} because the analysis starts from the root. You must then specify the name of the sequence you choose as outgroup after the option -{}-outgroup and \newchitree will perform the rooting. \item If you want to remove an outgroup from the analysis: if you work with \phylip, you will have to specify the name of the outgroup which should be removed after the option -{}-outgroup. This is not necessary with \paup because the outgroup is identified by a star in the paup output file, so \newchitree can find it. \end{itemize} \subsubsection{Number of permutations (option -{}-permutations or -r)} The program can compute a type I error corrected for multiple testing associated with the test by using a permutation procedure such as the one described in~\citet{Ge03} and in~\citet{Becker04}. In this case, the user must define the number of permutations to perform to evaluate the type I error by using the -{}-permutation (or -r) option. This number should be high, but the higher it is, the longer the computation time will be. Depending on the studied data sets, we suggest this number to be chosen between 10000 and 100000. \subsubsection{Threshold for chi-square significance (option chi2-threshold or -n)} If you do not want to compute the exact type I error by permutation, a significance threshold for the \chisquares can be chosen by the user using the -{}-chi2-threshold (or -n) option. In this case, you must put the -{}-permutation option to zero. \subsubsection{Branch prolongation (option -{}-no-prolongation)} If the -{}-no-prolongation option is specified in the command line, the different branches of the tree will not be prolonged. (see figure~\ref{fig:option_b}). \begin{figure}[htb] \begin{tabular}{|l|c|c|} \cline{2-3} \multicolumn{1}{c|}{}& \includegraphics[width=0.4\linewidth, subfig=1]{option_b.fig} & \includegraphics[width=0.4\linewidth, subfig=2]{option_b.fig} \\ \cline{2-3} \multicolumn{1}{c|}{}& With the -{}-no-prolongation option & Without the -{}-no-prolongation option \\ \cline{2-3} \multicolumn{1}{c|}{}&\multicolumn{2}{|c|}{The \chisquares are calculated between\footnote{The nosplit pattern of \chisquare is used}:} \\ \hline Level 1:& 1 - 2 and 3 & 1 2 and 3 \\ Level 2:& 2.1 - 2.2 - 3.1 - 3.2 & 1 - 2.1 - 2.2 - 3.1 and 3.2 \\ Level 3:& 3.2.1 and 3.2.2 & 1 - 2.1 - 2.2 - 3.1 - 3.2.1 and 3.2.2\\ \hline \end{tabular} \caption{Effect of the -b option} \label{fig:option_b} \end{figure} \textit{Warning: This option is currently under development. At present, the program has only been tested \emph{without} the \fn{-{}-no-prolongation} option specified. If you choose not to, you may encounter some problems.} \subsubsection{Ancestral sequence (option -{}-anc-seq)} This option is only necessary when the tree is rooted using an ancestral sequencce with \phylip. In this case, the ancestral sequence not being in the output file of \phylip, \newchitree cannot read it directly. So, you have to enter it manually after the -{}-anc-seq option. \subsubsection{Choice of the tree that will be analysed (option -{}-tree-to-analyse)} This option enables the user to specify the number of the tree that will be analysed among all the equiparsimonious trees present in the input file (the -{}-tree-to-analyse must be followed by the number of the chosen tree in the input file). If this option is not specified, the tree will be randomly drawn among all the equiparsimonious trees. \subsection{Description of the output file} Examples of output files are displayed in the test directory. They are labelled *.asso. The output file shows the tree, with the number of cases an controls at each nodes. At the root of the tree, there is a list of the different tests performed on the tree: the level of the test is indicated within square brackets, followed by the number of degrees of freedom (df=), the value of the \chisquare test and the corresponding p-value. In a second part of the file, a list of the p-values estimated by permutations (but non corrected for multiple testing) for each level of the tree is provided. Then, the last line gives the corrected p-value for the test. \section{Localisation test (option -{}-s-localisation or -l)} \subsection{Options specific to the localisation} \subsubsection{Number of trees (option -{}-number-of-trees-to-analyse)} With this option, you choose the number of trees to use in the localisation test. These trees are randomly sampled without replacement among all the equiparsimonious trees in the first input file. \subsubsection{-{}-s-site-number } With this option, you specify the position of the character $S$ in the haplotypes. The first site is numbered 1. \subsubsection{ -{}-s-site-characters ancestral state -> derived state} With this option, you specify which state is the ancestral state and which state is the derived state for the character $S$. The two states must be separated by the symbol ``->''. For example, if the character $S$ has two states 1 and 2, 1 being the ancestral state, you will use the option as follows: \\ \newchitree [other options ] -{}-s-site-characters ``1->2''\\ Be careful: this option is \emph{case sensitive} and the \emph{quotes are mandatory}. \subsubsection{ -{}-co-evo|e simple|double} This option enables the user to choose how the $V_{i}$ are calculated. \paragraph{option ''simple''} This option corresponds to the calculation of $V_{i}$ described in \citet{Bardel05}. Please refer to this publication for more information. \paragraph{option ''double''} This option corresponds to a new method to calculate $V_{i}$. This method seems to be more appropriate because it takes into account the two senses of character state changes. \\ Here is a short description of this new calculation method (one studied tree): \begin{itemize} \item Let $E^{0 \rightarrow 1}_{i}$ be the number of expected co-mutations of $S$ (2 character states: T [control] and M [case]) and $i$ (2 character states 0 and 1) $$E^{0 \rightarrow 1}_{i}=\frac{(m^{0 \rightarrow 1}_{i}\times s^{T \rightarrow M})+(m^{1 \rightarrow 0}_{i}\times s^{M \rightarrow T})}{b}$$ \\ where: \begin{description} \item[$m^{0 \rightarrow 1}_{i}$ (resp. $m^{1 \rightarrow 0}_{i}$)~:] nb transitions $0 \rightarrow 1$ (resp. $1 \rightarrow 0$) of $i$ \item[$s^{T \rightarrow M}$ (resp.$ s^{M \rightarrow T}$)~:] nb transitions $T \rightarrow M$ (resp. $M \rightarrow T$) of $S$ \item[$b$~:] nb branches of tree $t$ \end{description} \item Let $R^{0 \rightarrow 1}_{i}$ be the number of observed co-mutations of $S$ and $i$ on tree $t$ \item $V^{0 \rightarrow 1}_{i}$ is calculated as defined in \cite{Bardel05}: \end{itemize} $$\boxed{ \left\{\begin{array}{ll} V^{0 \rightarrow 1}_{i}=0 & if\ E^{0 \rightarrow 1}_{i}=0 \\ V^{0 \rightarrow 1}_{i}=\frac{\displaystyle{R^{0 \rightarrow 1}_{i}-E^{0 \rightarrow 1}_{i}}}% {\displaystyle{\sqrt{E^{0 \rightarrow 1}_{i}}}} & if \ E^{0 \rightarrow 1}_{i} \ne 0 \end{array} \right. }$$ If more than one tree is studied, the $V^{0 \rightarrow 1}_{i}$ must be summed for all the trees. \subsection{Description of the output file} The output file contains only a list of the different $V_i$ (in ascending order) for the different sites and the different character state transitions. The sites with the highest $V_i$ are putative susceptibility sites. \chapter{Example files} The \fn{test} directory contains example files for the three phylogeny reconstruction programs. The files are grouped in four directories: \begin{itemize} \item \fn{create\_file} which contains files and instructions necessary to obtain \paup or \paml/\phylip file formats from output files of the haplotype reconstruction program. \item \fn{\paup}, \fn{\phylip} and \fn{\paml} which contain files and instructions necessary to perfom association and localisation tests \end{itemize} In each directory, all the input and output files for all the programs and a bash script containing the different command lines are provided. % TODO Ajouter le changement des chemins!! \section{Obtention of input files for phylogeny reconstruction programs} The \fn{create\_file} directory is divided into 2 sub-directories: \fn{paup\_file} and \fn{phy-paml\_file}. In these directories, we present how to obtain input files for \paup and \phylip (or \paml) from output files of the haplotype reconstruction programs \phase and \famhap. \subsection{Creating \paup input files from \phase output file} The \fn{paup\_file} directory contains case/control data (12 SNPs genotyped for 100 case and 100 control individuals). The haplotypes are reconstructed using \phase and the \paup input file is generated using \rechaplo. The different files available in this directory are the following: \begin{description} \item [caco.phase~:] an input file for \phase containing the disease status for each individual \item [caco.phase.out~:] the main \phase output file. It is used as the input file for \rechaplo \item [caco.phase.out\_*~:] other \phase output files. They are not useful to run \altree \item [caco.prepaup~:] the main \rechaplo output file. It must be completed to become a valid \paup input file \item [nb\_cas\_control.txt~:] the \rechaplo output file containing the number of cases and controls carrying each haplotype \item [create\_file~:] a bash script containing the two command lines to run respectively \phase and \rechaplo \end{description} \begin{figure}[htb] \includegraphics[width=\linewidth]{create_file_paup.fig}\centering \caption{Summary of the files and programs used to obtain input files for \paup} \label{fig:create_paup} \end{figure} \subsection{Creating \phylip/\paml input files from \famhap output files} The \fn{phy-paml\_file} directory contains family data (10 SNPs genotyped for 100 trios: 2 parents + 1 affected child). The haplotypes are reconstructed using \famhap and the \phylip/\paml input file is generated using \rechaplo. The different files available in this directory are the following: \begin{description} \item [fam19\_0~:] an input file for \famhap (linkage format without headers) \item [trio.fmh and fam19\_0\_H1\_HAPLOTYPES~:] the two \famhap output files used by \rechaplo \item [fam19\_0\_*~:] all other \famhap output files. They are not useful to run \altree \item [trio.phy~:] the main \rechaplo output file. It is an input file for \phylip \item [nb\_cas\_control.txt~:] the \rechaplo output file containing the number of cases and controls carrying each haplotype \item [create\_file~:] a bash script containing the two command lines to run respectively \famhap and \rechaplo \end{description} % These example files correspond to two %situations: %\begin{itemize} %\item case/control data (100 case and 100 control individuals): they are analysed using \paup %\item family data (100 trios: 2 parents + 1 affected child): they are analysed using \phylip or \paml %\end{itemize} \begin{figure}[htb] \includegraphics[width=0.9\linewidth]{create_file_phy.fig}\centering \caption{Summary of the files and programs used to obtain input files for \phylip or \paml} \label{fig:create_phy} \end{figure} \section{Analysing \paup files} In the \fn{``test/paup/''} directory, six sub-directories can be found, each corresponding to a different way to root (or not) the tree using \paup: \begin{itemize} \item \fn{ancestor\_absent}: In this directory, the tree is rooted using an ancestral sequence which is not in the data set (it can be a consensus sequence for example) \item \fn{ancestor\_present}: In this directory, the tree is rooted using an ancestral sequence which is in the data set (it can be the most frequent haplotype in the sample for example) \item \fn{outgr\_absent}: In this directory, the tree is rooted using an outgroup which is not carried by case or control individuals (it can be an ape sequence for example) \item \fn{outgr\_present}: In this directory, the tree is rooted using an outgroup which is in the data set \item \fn{unrooted\_absent}: In this directory, the tree is not rooted with \paup. For the analysis, \newchitree roots the tree using an outgroup (we choose the sequence H000), but \emph{do not} take the outgroup into account for the association test \item \fn{unrooted\_present}: In this directory, the tree is not rooted with \paup. For the analysis, \newchitree roots the tree using an outgroup (we choose the sequence H000), and this haplotype \emph{is} taken into account for the association test \end{itemize} All these directories are split in two sub-directories containing the files used to perform the association test (directory \fn{association}) or the localisation test (directory \fn{localisation}) \emph{Warning: For the localisation test, as the rooting is not necessary, the question of the presence or not of an outgroup is irrelevant put the -{}-permutation to zero(directories unrooted\_absent and unrooted\_present). The two localisation sub-directories thus only correspond to two different data sets analysed with \altree.} \subsection{Association test} All the association directories contain the same files: \begin{description} \item [caco.paup~:] the valid \paup file \item [nb\_cas\_control.txt~:] the file containing the number of time each haplotype is carried by case and control individuals \item [test.res.log~:] the \paup output file which is used as an \newchitree input file \item [test.tree:~] the other \paup output file, which is not useful for \newchitree \item [1\_caco.asso:~] the \newchitree output file. The number of permutation being limited to 1, the corrected p-value doesn't mean anything! \item [run\_altree:~] a bash script containing the two command lines to run respectively \paup and \newchitree (association test) \end{description} \begin{figure}[htb] \includegraphics[width=0.95\linewidth]{association_paup.fig}\centering \caption{Summary of the different files and programs used for the association test (using \paup)} \label{fig:paup_asso} \end{figure} \subsection{Localisation test} All the localisation directories contain the same files: \begin{description} \item [caco.paup:~] the valid \paup file \item [nb\_cas\_control.txt~:] the file containing the number of time each haplotype is carried by case and control individuals \item [et\_caco.paup:~] the output file of \etHT. It is a valid \paup input file in which the character $S$ has been added \item [test.res.log~:] the \paup output file which is used as an \newchitree input file \item [test.tree:~] the other \paup output file, which is not useful for \newchitree \item [caco.loc:~] the \newchitree output file, result of the localisation test \item [run-prog:~] a bash script containing the three command lines to run respectively \etHT, \paup and then \newchitree (localisation test) \end{description} \begin{figure}[htb] \includegraphics[width=\linewidth]{localisation_paup.fig}\centering \caption{Summary of the different files and programs used for the localisation test (using \paup)} \label{fig:paup_loc} \end{figure} \section{Analysing \phylip files} In the \fn{\phylip} directory, four sub-directories can be found, corresponding to various rooting methods. These directories are similar to the ones described for \paup. They contains only one sub-directory named \fn{association}. For the moment, \altree cannot deal with \phylip files as input files for the localisation test because when there are ambiguities in the apomorphie reconstructions, \phylip keeps them in the output file and the state ``?'' is assigned to the ambiguous character. At present, \altree cannot deal with these ambiguities. \subsection{Association test} All the association directories contain almost the same files: \begin{description} \item [trio.phy:~] the \phylip input file \item [nb\_cas\_controls.txt:~] it contains the number of time each haplotype is carried by case and control individuals \item [outfile:~] the \phylip output file which is used as an \newchitree input file \item [outtre:~] the other \phylip output file, which is not useful for \newchitree \item [1\_trio\_phy.asso:~] the \newchitree output file, result of the localisation test \item [run-altree:~] a bash script containing the two command lines to run respectively \phylip and \newchitree (association test) \item [ancestors:~] it contains the ancestral sequence. This file is needed only if the tree is rooted using an ancestral sequence (\fn{ancestor\_absent} and \fn{ancestor\_present} directories) \end{description} \begin{figure}[htb] \centering \includegraphics[width=0.9\linewidth]{association_phylip.fig} \caption{Summary of the different files and programs used for the association test (using \phylip)} \label{fig:phylip_asso} \end{figure} \section{Analysing \paml files} In the directory \fn{\paml}, three sub-directories can be found: \begin{description} \item [tree\_building\_using\_phyML:~] as stated by its author, \paml is not a very good tool for tree reconstruction. In this example, we choose to reconstruct the phylogenetic tree using the software \phyml~\citep{Guindon03}. The phylogenetic reconstruction step has been performed in this directory \item[\fn{unrooted\_absent} and \fn{unrooted\_present}:~] which are similar to ones described for \paup. \end{description} \subsection{Phylogenetic tree reconstruction using \phyml} The files necessary for the phylogenetic reconstruction can be found in the directory \fn{tree\_building\_using\_phyML}. The input file for \phyml is the phylip format file named \fn{trio2.phy}. The options used to run \phyml are specified in the file \fn{run\_phyml}. The other files in the directory are \phyml output files. In the following, we will only use the file \fn{trio2.phy\_phyml\_tree.txt} which contains the reconstructed phylogenetic tree. \subsection{Association test} The two \fn{association} directories contain the same files: \begin{description} \item [trio2.phy:~] the \phylip format file containing the sequences. It is used as an input file for \paml \item [nb\_cas\_controls.txt:~] it contains the number of time each haplotype is carried by case and control individuals \item [trio2.phy\_phyml\_tree.txt:~] the output file of \phyml. It is also used as an input file for \paml \item [baseml.ctl:~] the parameter file used by \paml \item [rst:~] the \paml output file which will be used by \newchitree. It contains the apomorphy list and the tree structure \item[2base.t, lnf, mlb, rst1 and rub:~] all the other \paml output files. They are not useful for \newchitree \item [1\_trio\_ML.asso:~] the \newchitree output file, result of the association test \item [run\_altree:~] a bash script containing the two command lines to run respectively \paml and \newchitree (association test) \end{description} \begin{figure}[htb] \includegraphics[width=0.9\linewidth]{association_paml.fig}\centering \caption{Summary of the different files and programs used for the association test (using \paml)} \label{fig:paml_asso} \end{figure} \subsection{Localisation test} With \paml, only unrooted trees are obtained. These unrooted trees can be directly analysed with \newchitree, so the question of the presence or absence of an outgroup is irrelevant. Only one localisation directory exists, it is located in the directory \fn{unrooted\_present}. The \fn{localisation} directory contains the following files: \begin{description} \item[trio2.phy:~] the \phylip format file without the character $S$ \item [et\_trio2.phy:~] the \phylip format file including the character $S$. It is one of the input file for \paml \item [nb\_cas\_controls.txt:~] contains the number of time each haplotype is carried by case and control individuals \item [trio2.phy\_phyml\_tree.txt:~] the output file of \phyml (tree reconstructed without taking the character $S$ into account). It is also an input file for \paml \item [baseml.ctl:~] the parameter file used by \paml \item [rst:~] the \paml output file which will be used by \newchitree. It contains the apomorphy list and the tree structure \item[2base.t, lnf, mlb, rst1 and rub:~] all the other \paml output files. They are not useful for \newchitree \item [trio2.loc:~] the \newchitree output file, result of the localisation test \item [run-prog:~] a bash script containing the three command lines to run respectively \etHT, \paml and \newchitree (localisation test) \end{description} \begin{figure}[htb] \includegraphics[width=\linewidth]{localisation_paml.fig}\centering \caption{Summary of the different files and programs used for the localisation test (using \paml)} \label{fig:paml_loc} \end{figure} \chapter{URLs where programs can be downloaded} \section{Haplotype reconstruction programs} \famhap \url{http://www.uni-bonn.de/%7Eumt70e/becker.html} \phase \url{http://www.stat.washington.edu/stephens/software.html} \section{Phylogeny reconstruction programs} \paup \url{http://paup.csit.fsu.edu/} \phylip \url{http://evolution.genetics.washington.edu/phylip.html} \paml \url{http://abacus.gene.ucl.ac.uk/software/paml.html} \phyml \url{http://atgc.lirmm.fr/phyml/} \bibliographystyle{plainnat} \bibliography{stage} \end{document} \annexe \chapter{GNU GENERAL PUBLIC LICENSE} \label{GPL} \begin{center} {\Large GNU GENERAL PUBLIC LICENSE} \\ Version 2, June 1991 \end{center} Copyright (C) 1989, 1991 Free Software Foundation, Inc. \\ 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA \\ Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. \section{Preamble} The licenses for most software are designed to take away your freedom to share and change it. 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The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions: a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change. b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License. c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.) \newpage These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it. Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program. In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License. 3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following: a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or, c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.) The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable. If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code. \newpage 4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance. 5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it. 6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License. 7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program. If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances. It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice. This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License. \newpage 8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. \section{NO WARRANTY} 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. END OF TERMS AND CONDITIONS How to Apply These Terms to Your New Programs If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. \end{document} % LocalWords: outgroup paup altree-v1.3.1/Makefile.PL0000644000175000017500000000141112045212664015265 0ustar vdanjeanvdanjeanuse 5.008004; use ExtUtils::MakeMaker; # See lib/ExtUtils/MakeMaker.pm for details of how to influence # the contents of the Makefile that is written. WriteMakefile( NAME => 'altree', PMLIBDIRS => [ 'ALTree' ], DIR => [ 'CUtils' ], VERSION_FROM => 'progs/altree', depend => { Makefile => '$(VERSION_FROM)' }, LICENSE => 'perl', PREREQ_PM => {}, # e.g., Module::Name => 1.1 ($] >= 5.005 ? ## Add these new keywords supported since 5.005 (ABSTRACT_FROM => 'progs/altree', # retrieve abstract from module AUTHOR => 'Claire Bardel ') : ()), EXE_FILES => [qw (progs/altree progs/altree-add-S progs/altree-convert)], ); altree-v1.3.1/CUtils/0000755000175000017500000000000012252703410014513 5ustar vdanjeanvdanjeanaltree-v1.3.1/CUtils/CUtils.xs0000644000175000017500000002310112045222762016275 0ustar vdanjeanvdanjean#include "EXTERN.h" #include "perl.h" #include "XSUB.h" #include "ppport.h" #include "fisher.h" #include "chisq.h" #include "double_permutation.h" #include "resampling.h" #include "stats.h" #include "const-c.inc" MODULE = ALTree::CUtils PACKAGE = ALTree::CUtils INCLUDE: const-xs.inc ############################################################ # fisher.h ############################################################ double bilateral(a, b, c, d) double a double b double c double d double right(a, b, c, d) double a double b double c double d double left(a, b, c, d) double a double b double c double d ############################################################ # chisq.h ############################################################ double pochisq(x, df) double x int df double critchi(p, df) double p int df ############################################################ # rhyper.h ############################################################ int RHyper(n1, n2, k) int n1 int n2 int k CODE: RETVAL=rhyper(n1, n2, k); OUTPUT: RETVAL ############################################################ # double_permutation.h ############################################################ HV * DoublePermutation(nb_sample, nb_chi2, data) int nb_sample int nb_chi2 AV * data INIT: matrice_t mat; replicat_t rep; ensemble_t ens; int i,j,n; datatype_t min; AV * ra; CODE: //fprintf(stderr, "\nSTART(%i, %i)\n", nb_sample, nb_chi2); if ((nb_sample <= 0) || (nb_chi2 <= 0) || (av_len(data) != nb_sample*nb_chi2-1)) { XSRETURN_UNDEF; } mat=alloc_matrice(nb_sample, nb_chi2); rep=alloc_replicat(nb_chi2); ens=alloc_ensemble(nb_sample); n=0; for (i=0; i) { $funcs{$1} = 1 if /Provide:\s+(\S+)/; $macros{$1} = 1 if /^#\s*define\s+([a-zA-Z0-9_]+)/; $replace = $1 if /Replace:\s+(\d+)/; $badmacros{$2}=$1 if $replace and /^#\s*define\s+([a-zA-Z0-9_]+).*?\s+([a-zA-Z0-9_]+)/; $badmacros{$1}=$2 if /Replace (\S+) with (\S+)/; } foreach $filename (map(glob($_),@ARGV)) { unless (open(IN, "<$filename")) { warn "Unable to read from $file: $!\n"; next; } print "Scanning $filename...\n"; $c = ""; while () { $c .= $_; } close(IN); $need_include = 0; %add_func = (); $changes = 0; $has_include = ($c =~ /#.*include.*ppport/m); foreach $func (keys %funcs) { if ($c =~ /#.*define.*\bNEED_$func(_GLOBAL)?\b/m) { if ($c !~ /\b$func\b/m) { print "If $func isn't needed, you don't need to request it.\n" if $changes += ($c =~ s/^.*#.*define.*\bNEED_$func\b.*\n//m); } else { print "Uses $func\n"; $need_include = 1; } } else { if ($c =~ /\b$func\b/m) { $add_func{$func} =1 ; print "Uses $func\n"; $need_include = 1; } } } if (not $need_include) { foreach $macro (keys %macros) { if ($c =~ /\b$macro\b/m) { print "Uses $macro\n"; $need_include = 1; } } } foreach $badmacro (keys %badmacros) { if ($c =~ /\b$badmacro\b/m) { $changes += ($c =~ s/\b$badmacro\b/$badmacros{$badmacro}/gm); print "Uses $badmacros{$badmacro} (instead of $badmacro)\n"; $need_include = 1; } } if (scalar(keys %add_func) or $need_include != $has_include) { if (!$has_include) { $inc = join('',map("#define NEED_$_\n", sort keys %add_func)). "#include \"ppport.h\"\n"; $c = "$inc$c" unless $c =~ s/#.*include.*XSUB.*\n/$&$inc/m; } elsif (keys %add_func) { $inc = join('',map("#define NEED_$_\n", sort keys %add_func)); $c = "$inc$c" unless $c =~ s/^.*#.*include.*ppport.*$/$inc$&/m; } if (!$need_include) { print "Doesn't seem to need ppport.h.\n"; $c =~ s/^.*#.*include.*ppport.*\n//m; } $changes++; } if ($changes) { require POSIX; use Fcntl; for(;;) { $tmp = POSIX::tmpnam(); sysopen(OUT, $tmp, O_CREAT|O_WRONLY|O_EXCL, 0700) && last; } print OUT $c; close(OUT); open(DIFF, "diff -u $filename $tmp|"); while () { s!$tmp!$filename.patched!; print STDOUT; } close(DIFF); unlink($tmp); } else { print "Looks OK\n"; } } __DATA__ */ #ifndef _P_P_PORTABILITY_H_ #define _P_P_PORTABILITY_H_ #ifndef PERL_REVISION # ifndef __PATCHLEVEL_H_INCLUDED__ # define PERL_PATCHLEVEL_H_IMPLICIT # include # endif # if !(defined(PERL_VERSION) || (defined(SUBVERSION) && defined(PATCHLEVEL))) # include # endif # ifndef PERL_REVISION # define PERL_REVISION (5) /* Replace: 1 */ # define PERL_VERSION PATCHLEVEL # define PERL_SUBVERSION SUBVERSION /* Replace PERL_PATCHLEVEL with PERL_VERSION */ /* Replace: 0 */ # endif #endif #define PERL_BCDVERSION ((PERL_REVISION * 0x1000000L) + (PERL_VERSION * 0x1000L) + PERL_SUBVERSION) /* It is very unlikely that anyone will try to use this with Perl 6 (or greater), but who knows. */ #if PERL_REVISION != 5 # error ppport.h only works with Perl version 5 #endif /* PERL_REVISION != 5 */ #ifndef ERRSV # define ERRSV perl_get_sv("@",FALSE) #endif #if (PERL_VERSION < 4) || ((PERL_VERSION == 4) && (PERL_SUBVERSION <= 5)) /* Replace: 1 */ # define PL_Sv Sv # define PL_compiling compiling # define PL_copline copline # define PL_curcop curcop # define PL_curstash curstash # define PL_defgv defgv # define PL_dirty dirty # define PL_dowarn dowarn # define PL_hints hints # define PL_na na # define PL_perldb perldb # define PL_rsfp_filters rsfp_filters # define PL_rsfpv rsfp # define PL_stdingv stdingv # define PL_sv_no sv_no # define PL_sv_undef sv_undef # define PL_sv_yes sv_yes /* Replace: 0 */ #endif #ifdef HASATTRIBUTE # if (defined(__GNUC__) && defined(__cplusplus)) || defined(__INTEL_COMPILER) # define PERL_UNUSED_DECL # else # define PERL_UNUSED_DECL __attribute__((unused)) # endif #else # define PERL_UNUSED_DECL #endif #ifndef dNOOP # define NOOP (void)0 # define dNOOP extern int Perl___notused PERL_UNUSED_DECL #endif #ifndef dTHR # define dTHR dNOOP #endif #ifndef dTHX # define dTHX dNOOP # define dTHXa(x) dNOOP # define dTHXoa(x) dNOOP #endif #ifndef pTHX # define pTHX void # define pTHX_ # define aTHX # define aTHX_ #endif #ifndef dAX # define dAX I32 ax = MARK - PL_stack_base + 1 #endif #ifndef dITEMS # define dITEMS I32 items = SP - MARK #endif /* IV could also be a quad (say, a long long), but Perls * capable of those should have IVSIZE already. */ #if !defined(IVSIZE) && defined(LONGSIZE) # define IVSIZE LONGSIZE #endif #ifndef IVSIZE # define IVSIZE 4 /* A bold guess, but the best we can make. */ #endif #ifndef UVSIZE # define UVSIZE IVSIZE #endif #ifndef NVTYPE # if defined(USE_LONG_DOUBLE) && defined(HAS_LONG_DOUBLE) # define NVTYPE long double # else # define NVTYPE double # endif typedef NVTYPE NV; #endif #ifndef INT2PTR #if (IVSIZE == PTRSIZE) && (UVSIZE == PTRSIZE) # define PTRV UV # define INT2PTR(any,d) (any)(d) #else # if PTRSIZE == LONGSIZE # define PTRV unsigned long # else # define PTRV unsigned # endif # define INT2PTR(any,d) (any)(PTRV)(d) #endif #define NUM2PTR(any,d) (any)(PTRV)(d) #define PTR2IV(p) INT2PTR(IV,p) #define PTR2UV(p) INT2PTR(UV,p) #define PTR2NV(p) NUM2PTR(NV,p) #if PTRSIZE == LONGSIZE # define PTR2ul(p) (unsigned long)(p) #else # define PTR2ul(p) INT2PTR(unsigned long,p) #endif #endif /* !INT2PTR */ #ifndef boolSV # define boolSV(b) ((b) ? &PL_sv_yes : &PL_sv_no) #endif #ifndef gv_stashpvn # define gv_stashpvn(str,len,flags) gv_stashpv(str,flags) #endif #ifndef newSVpvn # define newSVpvn(data,len) ((len) ? newSVpv ((data), (len)) : newSVpv ("", 0)) #endif #ifndef newRV_inc /* Replace: 1 */ # define newRV_inc(sv) newRV(sv) /* Replace: 0 */ #endif /* DEFSV appears first in 5.004_56 */ #ifndef DEFSV # define DEFSV GvSV(PL_defgv) #endif #ifndef SAVE_DEFSV # define SAVE_DEFSV SAVESPTR(GvSV(PL_defgv)) #endif #ifndef newRV_noinc # ifdef __GNUC__ # define newRV_noinc(sv) \ ({ \ SV *nsv = (SV*)newRV(sv); \ SvREFCNT_dec(sv); \ nsv; \ }) # else # if defined(USE_THREADS) static SV * newRV_noinc (SV * sv) { SV *nsv = (SV*)newRV(sv); SvREFCNT_dec(sv); return nsv; } # else # define newRV_noinc(sv) \ (PL_Sv=(SV*)newRV(sv), SvREFCNT_dec(sv), (SV*)PL_Sv) # endif # endif #endif /* Provide: newCONSTSUB */ /* newCONSTSUB from IO.xs is in the core starting with 5.004_63 */ #if (PERL_VERSION < 4) || ((PERL_VERSION == 4) && (PERL_SUBVERSION < 63)) #if defined(NEED_newCONSTSUB) static #else extern void newCONSTSUB(HV * stash, char * name, SV *sv); #endif #if defined(NEED_newCONSTSUB) || defined(NEED_newCONSTSUB_GLOBAL) void newCONSTSUB(stash,name,sv) HV *stash; char *name; SV *sv; { U32 oldhints = PL_hints; HV *old_cop_stash = PL_curcop->cop_stash; HV *old_curstash = PL_curstash; line_t oldline = PL_curcop->cop_line; PL_curcop->cop_line = PL_copline; PL_hints &= ~HINT_BLOCK_SCOPE; if (stash) PL_curstash = PL_curcop->cop_stash = stash; newSUB( #if (PERL_VERSION < 3) || ((PERL_VERSION == 3) && (PERL_SUBVERSION < 22)) /* before 5.003_22 */ start_subparse(), #else # if (PERL_VERSION == 3) && (PERL_SUBVERSION == 22) /* 5.003_22 */ start_subparse(0), # else /* 5.003_23 onwards */ start_subparse(FALSE, 0), # endif #endif newSVOP(OP_CONST, 0, newSVpv(name,0)), newSVOP(OP_CONST, 0, &PL_sv_no), /* SvPV(&PL_sv_no) == "" -- GMB */ newSTATEOP(0, Nullch, newSVOP(OP_CONST, 0, sv)) ); PL_hints = oldhints; PL_curcop->cop_stash = old_cop_stash; PL_curstash = old_curstash; PL_curcop->cop_line = oldline; } #endif #endif /* newCONSTSUB */ #ifndef START_MY_CXT /* * Boilerplate macros for initializing and accessing interpreter-local * data from C. All statics in extensions should be reworked to use * this, if you want to make the extension thread-safe. See ext/re/re.xs * for an example of the use of these macros. * * Code that uses these macros is responsible for the following: * 1. #define MY_CXT_KEY to a unique string, e.g. "DynaLoader_guts" * 2. Declare a typedef named my_cxt_t that is a structure that contains * all the data that needs to be interpreter-local. * 3. Use the START_MY_CXT macro after the declaration of my_cxt_t. * 4. Use the MY_CXT_INIT macro such that it is called exactly once * (typically put in the BOOT: section). * 5. Use the members of the my_cxt_t structure everywhere as * MY_CXT.member. * 6. Use the dMY_CXT macro (a declaration) in all the functions that * access MY_CXT. */ #if defined(MULTIPLICITY) || defined(PERL_OBJECT) || \ defined(PERL_CAPI) || defined(PERL_IMPLICIT_CONTEXT) /* This must appear in all extensions that define a my_cxt_t structure, * right after the definition (i.e. at file scope). The non-threads * case below uses it to declare the data as static. */ #define START_MY_CXT #if (PERL_VERSION < 4 || (PERL_VERSION == 4 && PERL_SUBVERSION < 68 )) /* Fetches the SV that keeps the per-interpreter data. */ #define dMY_CXT_SV \ SV *my_cxt_sv = perl_get_sv(MY_CXT_KEY, FALSE) #else /* >= perl5.004_68 */ #define dMY_CXT_SV \ SV *my_cxt_sv = *hv_fetch(PL_modglobal, MY_CXT_KEY, \ sizeof(MY_CXT_KEY)-1, TRUE) #endif /* < perl5.004_68 */ /* This declaration should be used within all functions that use the * interpreter-local data. */ #define dMY_CXT \ dMY_CXT_SV; \ my_cxt_t *my_cxtp = INT2PTR(my_cxt_t*,SvUV(my_cxt_sv)) /* Creates and zeroes the per-interpreter data. * (We allocate my_cxtp in a Perl SV so that it will be released when * the interpreter goes away.) */ #define MY_CXT_INIT \ dMY_CXT_SV; \ /* newSV() allocates one more than needed */ \ my_cxt_t *my_cxtp = (my_cxt_t*)SvPVX(newSV(sizeof(my_cxt_t)-1));\ Zero(my_cxtp, 1, my_cxt_t); \ sv_setuv(my_cxt_sv, PTR2UV(my_cxtp)) /* This macro must be used to access members of the my_cxt_t structure. * e.g. MYCXT.some_data */ #define MY_CXT (*my_cxtp) /* Judicious use of these macros can reduce the number of times dMY_CXT * is used. Use is similar to pTHX, aTHX etc. */ #define pMY_CXT my_cxt_t *my_cxtp #define pMY_CXT_ pMY_CXT, #define _pMY_CXT ,pMY_CXT #define aMY_CXT my_cxtp #define aMY_CXT_ aMY_CXT, #define _aMY_CXT ,aMY_CXT #else /* single interpreter */ #define START_MY_CXT static my_cxt_t my_cxt; #define dMY_CXT_SV dNOOP #define dMY_CXT dNOOP #define MY_CXT_INIT NOOP #define MY_CXT my_cxt #define pMY_CXT void #define pMY_CXT_ #define _pMY_CXT #define aMY_CXT #define aMY_CXT_ #define _aMY_CXT #endif #endif /* START_MY_CXT */ #ifndef IVdf # if IVSIZE == LONGSIZE # define IVdf "ld" # define UVuf "lu" # define UVof "lo" # define UVxf "lx" # define UVXf "lX" # else # if IVSIZE == INTSIZE # define IVdf "d" # define UVuf "u" # define UVof "o" # define UVxf "x" # define UVXf "X" # endif # endif #endif #ifndef NVef # if defined(USE_LONG_DOUBLE) && defined(HAS_LONG_DOUBLE) && \ defined(PERL_PRIfldbl) /* Not very likely, but let's try anyway. */ # define NVef PERL_PRIeldbl # define NVff PERL_PRIfldbl # define NVgf PERL_PRIgldbl # else # define NVef "e" # define NVff "f" # define NVgf "g" # endif #endif #ifndef AvFILLp /* Older perls (<=5.003) lack AvFILLp */ # define AvFILLp AvFILL #endif #ifdef SvPVbyte # if PERL_REVISION == 5 && PERL_VERSION < 7 /* SvPVbyte does not work in perl-5.6.1, borrowed version for 5.7.3 */ # undef SvPVbyte # define SvPVbyte(sv, lp) \ ((SvFLAGS(sv) & (SVf_POK|SVf_UTF8)) == (SVf_POK) \ ? ((lp = SvCUR(sv)), SvPVX(sv)) : my_sv_2pvbyte(aTHX_ sv, &lp)) static char * my_sv_2pvbyte(pTHX_ register SV *sv, STRLEN *lp) { sv_utf8_downgrade(sv,0); return SvPV(sv,*lp); } # endif #else # define SvPVbyte SvPV #endif #ifndef SvPV_nolen # define SvPV_nolen(sv) \ ((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \ ? SvPVX(sv) : sv_2pv_nolen(sv)) static char * sv_2pv_nolen(pTHX_ register SV *sv) { STRLEN n_a; return sv_2pv(sv, &n_a); } #endif #ifndef get_cv # define get_cv(name,create) perl_get_cv(name,create) #endif #ifndef get_sv # define get_sv(name,create) perl_get_sv(name,create) #endif #ifndef get_av # define get_av(name,create) perl_get_av(name,create) #endif #ifndef get_hv # define get_hv(name,create) perl_get_hv(name,create) #endif #ifndef call_argv # define call_argv perl_call_argv #endif #ifndef call_method # define call_method perl_call_method #endif #ifndef call_pv # define call_pv perl_call_pv #endif #ifndef call_sv # define call_sv perl_call_sv #endif #ifndef eval_pv # define eval_pv perl_eval_pv #endif #ifndef eval_sv # define eval_sv perl_eval_sv #endif #ifndef PERL_SCAN_GREATER_THAN_UV_MAX # define PERL_SCAN_GREATER_THAN_UV_MAX 0x02 #endif #ifndef PERL_SCAN_SILENT_ILLDIGIT # define PERL_SCAN_SILENT_ILLDIGIT 0x04 #endif #ifndef PERL_SCAN_ALLOW_UNDERSCORES # define PERL_SCAN_ALLOW_UNDERSCORES 0x01 #endif #ifndef PERL_SCAN_DISALLOW_PREFIX # define PERL_SCAN_DISALLOW_PREFIX 0x02 #endif #if (PERL_VERSION > 6) || ((PERL_VERSION == 6) && (PERL_SUBVERSION >= 1)) #define I32_CAST #else #define I32_CAST (I32*) #endif #ifndef grok_hex static UV _grok_hex (char *string, STRLEN *len, I32 *flags, NV *result) { NV r = scan_hex(string, *len, I32_CAST len); if (r > UV_MAX) { *flags |= PERL_SCAN_GREATER_THAN_UV_MAX; if (result) *result = r; return UV_MAX; } return (UV)r; } # define grok_hex(string, len, flags, result) \ _grok_hex((string), (len), (flags), (result)) #endif #ifndef grok_oct static UV _grok_oct (char *string, STRLEN *len, I32 *flags, NV *result) { NV r = scan_oct(string, *len, I32_CAST len); if (r > UV_MAX) { *flags |= PERL_SCAN_GREATER_THAN_UV_MAX; if (result) *result = r; return UV_MAX; } return (UV)r; } # define grok_oct(string, len, flags, result) \ _grok_oct((string), (len), (flags), (result)) #endif #if !defined(grok_bin) && defined(scan_bin) static UV _grok_bin (char *string, STRLEN *len, I32 *flags, NV *result) { NV r = scan_bin(string, *len, I32_CAST len); if (r > UV_MAX) { *flags |= PERL_SCAN_GREATER_THAN_UV_MAX; if (result) *result = r; return UV_MAX; } return (UV)r; } # define grok_bin(string, len, flags, result) \ _grok_bin((string), (len), (flags), (result)) #endif #ifndef IN_LOCALE # define IN_LOCALE \ (PL_curcop == &PL_compiling ? IN_LOCALE_COMPILETIME : IN_LOCALE_RUNTIME) #endif #ifndef IN_LOCALE_RUNTIME # define IN_LOCALE_RUNTIME (PL_curcop->op_private & HINT_LOCALE) #endif #ifndef IN_LOCALE_COMPILETIME # define IN_LOCALE_COMPILETIME (PL_hints & HINT_LOCALE) #endif #ifndef IS_NUMBER_IN_UV # define IS_NUMBER_IN_UV 0x01 # define IS_NUMBER_GREATER_THAN_UV_MAX 0x02 # define IS_NUMBER_NOT_INT 0x04 # define IS_NUMBER_NEG 0x08 # define IS_NUMBER_INFINITY 0x10 # define IS_NUMBER_NAN 0x20 #endif #ifndef grok_numeric_radix # define GROK_NUMERIC_RADIX(sp, send) grok_numeric_radix(aTHX_ sp, send) #define grok_numeric_radix Perl_grok_numeric_radix bool Perl_grok_numeric_radix(pTHX_ const char **sp, const char *send) { #ifdef USE_LOCALE_NUMERIC #if (PERL_VERSION > 6) || ((PERL_VERSION == 6) && (PERL_SUBVERSION >= 1)) if (PL_numeric_radix_sv && IN_LOCALE) { STRLEN len; char* radix = SvPV(PL_numeric_radix_sv, len); if (*sp + len <= send && memEQ(*sp, radix, len)) { *sp += len; return TRUE; } } #else /* pre5.6.0 perls don't have PL_numeric_radix_sv so the radix * must manually be requested from locale.h */ #include struct lconv *lc = localeconv(); char *radix = lc->decimal_point; if (radix && IN_LOCALE) { STRLEN len = strlen(radix); if (*sp + len <= send && memEQ(*sp, radix, len)) { *sp += len; return TRUE; } } #endif /* PERL_VERSION */ #endif /* USE_LOCALE_NUMERIC */ /* always try "." if numeric radix didn't match because * we may have data from different locales mixed */ if (*sp < send && **sp == '.') { ++*sp; return TRUE; } return FALSE; } #endif /* grok_numeric_radix */ #ifndef grok_number #define grok_number Perl_grok_number int Perl_grok_number(pTHX_ const char *pv, STRLEN len, UV *valuep) { const char *s = pv; const char *send = pv + len; const UV max_div_10 = UV_MAX / 10; const char max_mod_10 = UV_MAX % 10; int numtype = 0; int sawinf = 0; int sawnan = 0; while (s < send && isSPACE(*s)) s++; if (s == send) { return 0; } else if (*s == '-') { s++; numtype = IS_NUMBER_NEG; } else if (*s == '+') s++; if (s == send) return 0; /* next must be digit or the radix separator or beginning of infinity */ if (isDIGIT(*s)) { /* UVs are at least 32 bits, so the first 9 decimal digits cannot overflow. */ UV value = *s - '0'; /* This construction seems to be more optimiser friendly. (without it gcc does the isDIGIT test and the *s - '0' separately) With it gcc on arm is managing 6 instructions (6 cycles) per digit. In theory the optimiser could deduce how far to unroll the loop before checking for overflow. */ if (++s < send) { int digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { /* Now got 9 digits, so need to check each time for overflow. */ digit = *s - '0'; while (digit >= 0 && digit <= 9 && (value < max_div_10 || (value == max_div_10 && digit <= max_mod_10))) { value = value * 10 + digit; if (++s < send) digit = *s - '0'; else break; } if (digit >= 0 && digit <= 9 && (s < send)) { /* value overflowed. skip the remaining digits, don't worry about setting *valuep. */ do { s++; } while (s < send && isDIGIT(*s)); numtype |= IS_NUMBER_GREATER_THAN_UV_MAX; goto skip_value; } } } } } } } } } } } } } } } } } } numtype |= IS_NUMBER_IN_UV; if (valuep) *valuep = value; skip_value: if (GROK_NUMERIC_RADIX(&s, send)) { numtype |= IS_NUMBER_NOT_INT; while (s < send && isDIGIT(*s)) /* optional digits after the radix */ s++; } } else if (GROK_NUMERIC_RADIX(&s, send)) { numtype |= IS_NUMBER_NOT_INT | IS_NUMBER_IN_UV; /* valuep assigned below */ /* no digits before the radix means we need digits after it */ if (s < send && isDIGIT(*s)) { do { s++; } while (s < send && isDIGIT(*s)); if (valuep) { /* integer approximation is valid - it's 0. */ *valuep = 0; } } else return 0; } else if (*s == 'I' || *s == 'i') { s++; if (s == send || (*s != 'N' && *s != 'n')) return 0; s++; if (s == send || (*s != 'F' && *s != 'f')) return 0; s++; if (s < send && (*s == 'I' || *s == 'i')) { s++; if (s == send || (*s != 'N' && *s != 'n')) return 0; s++; if (s == send || (*s != 'I' && *s != 'i')) return 0; s++; if (s == send || (*s != 'T' && *s != 't')) return 0; s++; if (s == send || (*s != 'Y' && *s != 'y')) return 0; s++; } sawinf = 1; } else if (*s == 'N' || *s == 'n') { /* XXX TODO: There are signaling NaNs and quiet NaNs. */ s++; if (s == send || (*s != 'A' && *s != 'a')) return 0; s++; if (s == send || (*s != 'N' && *s != 'n')) return 0; s++; sawnan = 1; } else return 0; if (sawinf) { numtype &= IS_NUMBER_NEG; /* Keep track of sign */ numtype |= IS_NUMBER_INFINITY | IS_NUMBER_NOT_INT; } else if (sawnan) { numtype &= IS_NUMBER_NEG; /* Keep track of sign */ numtype |= IS_NUMBER_NAN | IS_NUMBER_NOT_INT; } else if (s < send) { /* we can have an optional exponent part */ if (*s == 'e' || *s == 'E') { /* The only flag we keep is sign. Blow away any "it's UV" */ numtype &= IS_NUMBER_NEG; numtype |= IS_NUMBER_NOT_INT; s++; if (s < send && (*s == '-' || *s == '+')) s++; if (s < send && isDIGIT(*s)) { do { s++; } while (s < send && isDIGIT(*s)); } else return 0; } } while (s < send && isSPACE(*s)) s++; if (s >= send) return numtype; if (len == 10 && memEQ(pv, "0 but true", 10)) { if (valuep) *valuep = 0; return IS_NUMBER_IN_UV; } return 0; } #endif /* grok_number */ #ifndef PERL_MAGIC_sv # define PERL_MAGIC_sv '\0' #endif #ifndef PERL_MAGIC_overload # define PERL_MAGIC_overload 'A' #endif #ifndef PERL_MAGIC_overload_elem # define PERL_MAGIC_overload_elem 'a' #endif #ifndef PERL_MAGIC_overload_table # define PERL_MAGIC_overload_table 'c' #endif #ifndef PERL_MAGIC_bm # define PERL_MAGIC_bm 'B' #endif #ifndef PERL_MAGIC_regdata # define PERL_MAGIC_regdata 'D' #endif #ifndef PERL_MAGIC_regdatum # define PERL_MAGIC_regdatum 'd' #endif #ifndef PERL_MAGIC_env # define PERL_MAGIC_env 'E' #endif #ifndef PERL_MAGIC_envelem # define PERL_MAGIC_envelem 'e' #endif #ifndef PERL_MAGIC_fm # define PERL_MAGIC_fm 'f' #endif #ifndef PERL_MAGIC_regex_global # define PERL_MAGIC_regex_global 'g' #endif #ifndef PERL_MAGIC_isa # define PERL_MAGIC_isa 'I' #endif #ifndef PERL_MAGIC_isaelem # define PERL_MAGIC_isaelem 'i' #endif #ifndef PERL_MAGIC_nkeys # define PERL_MAGIC_nkeys 'k' #endif #ifndef PERL_MAGIC_dbfile # define PERL_MAGIC_dbfile 'L' #endif #ifndef PERL_MAGIC_dbline # define PERL_MAGIC_dbline 'l' #endif #ifndef PERL_MAGIC_mutex # define PERL_MAGIC_mutex 'm' #endif #ifndef PERL_MAGIC_shared # define PERL_MAGIC_shared 'N' #endif #ifndef PERL_MAGIC_shared_scalar # define PERL_MAGIC_shared_scalar 'n' #endif #ifndef PERL_MAGIC_collxfrm # define PERL_MAGIC_collxfrm 'o' #endif #ifndef PERL_MAGIC_tied # define PERL_MAGIC_tied 'P' #endif #ifndef PERL_MAGIC_tiedelem # define PERL_MAGIC_tiedelem 'p' #endif #ifndef PERL_MAGIC_tiedscalar # define PERL_MAGIC_tiedscalar 'q' #endif #ifndef PERL_MAGIC_qr # define PERL_MAGIC_qr 'r' #endif #ifndef PERL_MAGIC_sig # define PERL_MAGIC_sig 'S' #endif #ifndef PERL_MAGIC_sigelem # define PERL_MAGIC_sigelem 's' #endif #ifndef PERL_MAGIC_taint # define PERL_MAGIC_taint 't' #endif #ifndef PERL_MAGIC_uvar # define PERL_MAGIC_uvar 'U' #endif #ifndef PERL_MAGIC_uvar_elem # define PERL_MAGIC_uvar_elem 'u' #endif #ifndef PERL_MAGIC_vstring # define PERL_MAGIC_vstring 'V' #endif #ifndef PERL_MAGIC_vec # define PERL_MAGIC_vec 'v' #endif #ifndef PERL_MAGIC_utf8 # define PERL_MAGIC_utf8 'w' #endif #ifndef PERL_MAGIC_substr # define PERL_MAGIC_substr 'x' #endif #ifndef PERL_MAGIC_defelem # define PERL_MAGIC_defelem 'y' #endif #ifndef PERL_MAGIC_glob # define PERL_MAGIC_glob '*' #endif #ifndef PERL_MAGIC_arylen # define PERL_MAGIC_arylen '#' #endif #ifndef PERL_MAGIC_pos # define PERL_MAGIC_pos '.' #endif #ifndef PERL_MAGIC_backref # define PERL_MAGIC_backref '<' #endif #ifndef PERL_MAGIC_ext # define PERL_MAGIC_ext '~' #endif #endif /* _P_P_PORTABILITY_H_ */ /* End of File ppport.h */ altree-v1.3.1/CUtils/MYMETA.json0000644000175000017500000000152412252703404016407 0ustar vdanjeanvdanjean{ "abstract" : "Perl extension for blah blah blah", "author" : [ "Claire Bardel " ], "dynamic_config" : 0, "generated_by" : "ExtUtils::MakeMaker version 6.66, CPAN::Meta::Converter version 2.120921", "license" : [ "unknown" ], "meta-spec" : { "url" : "http://search.cpan.org/perldoc?CPAN::Meta::Spec", "version" : "2" }, "name" : "ALTree-CUtils", "no_index" : { "directory" : [ "t", "inc" ] }, "prereqs" : { "build" : { "requires" : { "ExtUtils::MakeMaker" : "0" } }, "configure" : { "requires" : { "ExtUtils::MakeMaker" : "0" } }, "runtime" : { "requires" : {} } }, "release_status" : "stable", "version" : "1.1" } altree-v1.3.1/CUtils/const-xs.inc0000644000175000017500000000513712252703404016775 0ustar vdanjeanvdanjeanvoid constant(sv) PREINIT: #ifdef dXSTARG dXSTARG; /* Faster if we have it. */ #else dTARGET; #endif STRLEN len; int type; /* IV iv; Uncomment this if you need to return IVs */ /* NV nv; Uncomment this if you need to return NVs */ /* const char *pv; Uncomment this if you need to return PVs */ INPUT: SV * sv; const char * s = SvPV(sv, len); PPCODE: type = constant(aTHX_ s, len); /* Return 1 or 2 items. First is error message, or undef if no error. Second, if present, is found value */ switch (type) { case PERL_constant_NOTFOUND: sv = sv_2mortal(newSVpvf("%s is not a valid ALTree::CUtils macro", s)); PUSHs(sv); break; case PERL_constant_NOTDEF: sv = sv_2mortal(newSVpvf( "Your vendor has not defined ALTree::CUtils macro %s, used", s)); PUSHs(sv); break; /* Uncomment this if you need to return IVs case PERL_constant_ISIV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHi(iv); break; */ /* Uncomment this if you need to return NOs case PERL_constant_ISNO: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHs(&PL_sv_no); break; */ /* Uncomment this if you need to return NVs case PERL_constant_ISNV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHn(nv); break; */ /* Uncomment this if you need to return PVs case PERL_constant_ISPV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHp(pv, strlen(pv)); break; */ /* Uncomment this if you need to return PVNs case PERL_constant_ISPVN: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHp(pv, iv); break; */ /* Uncomment this if you need to return SVs case PERL_constant_ISSV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHs(sv); break; */ /* Uncomment this if you need to return UNDEFs case PERL_constant_ISUNDEF: break; */ /* Uncomment this if you need to return UVs case PERL_constant_ISUV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHu((UV)iv); break; */ /* Uncomment this if you need to return YESs case PERL_constant_ISYES: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHs(&PL_sv_yes); break; */ default: sv = sv_2mortal(newSVpvf( "Unexpected return type %d while processing ALTree::CUtils macro %s, used", type, s)); PUSHs(sv); } altree-v1.3.1/CUtils/t/0000755000175000017500000000000012252703410014756 5ustar vdanjeanvdanjeanaltree-v1.3.1/CUtils/t/double_permutation.t0000644000175000017500000000204312164126016021046 0ustar vdanjeanvdanjean# Before `make install' is performed this script should be runnable with # `make test'. After `make install' it should work as `perl CUtils.t' ######################### # change 'tests => 1' to 'tests => last_test_to_print'; use Test::More tests => 3; use Test::Deep; BEGIN { use_ok('ALTree::CUtils') }; ######################### # Insert your test code below, the Test::More module is use()ed here so read # its man page ( perldoc Test::More ) for help writing this test script. $res=ALTree::CUtils::DoublePermutation(2,3, [0, 0.1]); is($res, undef, "undef when bad args"); $res=ALTree::CUtils::DoublePermutation(10, 2, [12.1, 432.2, 123.3, 15.4, 3453.5, 34253.6, 12.7, 23.8, 23.9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20] ); $p=0.00001; cmp_deeply($res, { "pmin" => num(0.2, $p), "chi2" => [ num(0.8, $p), num(0.1, $p)], "distrib_pmin" => [num(0.1, $p), num(0.1, $p), num(0 , $p), num(0.2, $p), num(0.2, $p), num(0.8, $p), num(0.6, $p), num(0.5, $p), num(0.4, $p), num(0.3, $p)] }, "double_permutation"); altree-v1.3.1/CUtils/t/ALTree-CUtils.t0000644000175000017500000000073512043315246017471 0ustar vdanjeanvdanjean# Before `make install' is performed this script should be runnable with # `make test'. After `make install' it should work as `perl ALTree-CUtils.t' ######################### # change 'tests => 1' to 'tests => last_test_to_print'; use Test::More tests => 1; BEGIN { use_ok('ALTree::CUtils') }; ######################### # Insert your test code below, the Test::More module is use()ed here so read # its man page ( perldoc Test::More ) for help writing this test script. altree-v1.3.1/CUtils/fallback/0000755000175000017500000000000012252703410016252 5ustar vdanjeanvdanjeanaltree-v1.3.1/CUtils/fallback/const-c.inc0000644000175000017500000000325112043315246020320 0ustar vdanjeanvdanjean#define PERL_constant_NOTFOUND 1 #define PERL_constant_NOTDEF 2 #define PERL_constant_ISIV 3 #define PERL_constant_ISNO 4 #define PERL_constant_ISNV 5 #define PERL_constant_ISPV 6 #define PERL_constant_ISPVN 7 #define PERL_constant_ISSV 8 #define PERL_constant_ISUNDEF 9 #define PERL_constant_ISUV 10 #define PERL_constant_ISYES 11 #ifndef NVTYPE typedef double NV; /* 5.6 and later define NVTYPE, and typedef NV to it. */ #endif #ifndef aTHX_ #define aTHX_ /* 5.6 or later define this for threading support. */ #endif #ifndef pTHX_ #define pTHX_ /* 5.6 or later define this for threading support. */ #endif static int constant (pTHX_ const char *name, STRLEN len) { /* Initially switch on the length of the name. */ /* When generated this function returned values for the list of names given in this section of perl code. Rather than manually editing these functions to add or remove constants, which would result in this comment and section of code becoming inaccurate, we recommend that you edit this section of code, and use it to regenerate a new set of constant functions which you then use to replace the originals. Regenerate these constant functions by feeding this entire source file to perl -x #!/usr/bin/perl -w use ExtUtils::Constant qw (constant_types C_constant XS_constant); my $types = {map {($_, 1)} qw()}; my @names = (qw()); print constant_types(); # macro defs foreach (C_constant ("ALTree::CUtils", 'constant', 'IV', $types, undef, 3, @names) ) { print $_, "\n"; # C constant subs } print "#### XS Section:\n"; print XS_constant ("ALTree::CUtils", $types); __END__ */ switch (len) { } return PERL_constant_NOTFOUND; } altree-v1.3.1/CUtils/fallback/const-xs.inc0000644000175000017500000000512312043315246020530 0ustar vdanjeanvdanjeanvoid constant(sv) PREINIT: #ifdef dXSTARG dXSTARG; /* Faster if we have it. */ #else dTARGET; #endif STRLEN len; int type; /* IV iv; Uncomment this if you need to return IVs */ /* NV nv; Uncomment this if you need to return NVs */ /* const char *pv; Uncomment this if you need to return PVs */ INPUT: SV * sv; const char * s = SvPV(sv, len); PPCODE: type = constant(aTHX_ s, len); /* Return 1 or 2 items. First is error message, or undef if no error. Second, if present, is found value */ switch (type) { case PERL_constant_NOTFOUND: sv = sv_2mortal(newSVpvf("%s is not a valid ALTree::CUtils macro", s)); PUSHs(sv); break; case PERL_constant_NOTDEF: sv = sv_2mortal(newSVpvf( "Your vendor has not defined ALTree::CUtils macro %s, used", s)); PUSHs(sv); break; /* Uncomment this if you need to return IVs case PERL_constant_ISIV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHi(iv); break; */ /* Uncomment this if you need to return NOs case PERL_constant_ISNO: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHs(&PL_sv_no); break; */ /* Uncomment this if you need to return NVs case PERL_constant_ISNV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHn(nv); break; */ /* Uncomment this if you need to return PVs case PERL_constant_ISPV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHp(pv, strlen(pv)); break; */ /* Uncomment this if you need to return PVNs case PERL_constant_ISPVN: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHp(pv, iv); break; */ /* Uncomment this if you need to return SVs case PERL_constant_ISSV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHs(sv); break; */ /* Uncomment this if you need to return UNDEFs case PERL_constant_ISUNDEF: break; */ /* Uncomment this if you need to return UVs case PERL_constant_ISUV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHu((UV)iv); break; */ /* Uncomment this if you need to return YESs case PERL_constant_ISYES: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHs(&PL_sv_yes); break; */ default: sv = sv_2mortal(newSVpvf( "Unexpected return type %d while processing ALTree::CUtils macro %s, used", type, s)); PUSHs(sv); } altree-v1.3.1/CUtils/c_sources/0000755000175000017500000000000012252703410016500 5ustar vdanjeanvdanjeanaltree-v1.3.1/CUtils/c_sources/rhyper.h0000644000175000017500000000013212044744147020171 0ustar vdanjeanvdanjean#ifndef _RHYPER_H #define _RHYPER_H int rhyper(int nn1in, int nn2in, int kkin); #endif altree-v1.3.1/CUtils/c_sources/chisq.h0000644000175000017500000000015712043767111017771 0ustar vdanjeanvdanjean#ifndef _CHISQ_H #define _CHISQ_H double pochisq(double x, int df); double critchi(double p, int df); #endif altree-v1.3.1/CUtils/c_sources/double_permutation.c0000644000175000017500000001105012044247164022552 0ustar vdanjeanvdanjean #include #include #include #include "double_permutation.h" #define CALC_PVAL(count, nb_sample) \ (((datatype_t)(count-1))/* On s'enlève soi-même*/ \ /(nb_sample)) int read_matrice(matrice_t mat, int nb_sample, int nb_chi2) { int i, j; datatype_t d; int res; for (i=0; i=val_ref) { count++; } } //printf( "count=%i\n", count); return count; } inline static int count_inferieur(ensemble_t ens, datatype_t val_ref, int nb_sample) { int i, count=0; for (i=0; i< nb_sample; i++) { if (ens[i]<=val_ref) { count++; } } //printf( "count=%i\n", count); return count; } inline static datatype_t pval_min(replicat_t rep, int nb_chi2) { int i; datatype_t ret=rep[0]; for (i=1; i #define Z_EPSILON 0.000001 /* accuracy of critz approximation */ #define Z_MAX 6.0 /* maximum meaningful z value */ #include "z.h" #ifdef ZTEST main () { double z; printf ("%4s %10s %10s %10s\n", "z", "poz(z)", "poz(-z)", "z'"); for (z = 0.0; z <= Z_MAX; z += .01) { printf ("%4.2f %10.6f %10.6f %10.6f\n", z, poz (z), poz (-z), critz (poz (z))); } } #endif /* ZTEST */ /*FUNCTION poz: probability of normal z value */ /*ALGORITHM Adapted from a polynomial approximation in: Ibbetson D, Algorithm 209 Collected Algorithms of the CACM 1963 p. 616 Note: This routine has six digit accuracy, so it is only useful for absolute z values < 6. For z values >= to 6.0, poz() returns 0.0. */ double /*VAR returns cumulative probability from -oo to z */ poz (z) double z; /*VAR normal z value */ { double y, x, w; if (z == 0.0) x = 0.0; else { y = 0.5 * fabs (z); if (y >= (Z_MAX * 0.5)) x = 1.0; else if (y < 1.0) { w = y*y; x = ((((((((0.000124818987 * w -0.001075204047) * w +0.005198775019) * w -0.019198292004) * w +0.059054035642) * w -0.151968751364) * w +0.319152932694) * w -0.531923007300) * w +0.797884560593) * y * 2.0; } else { y -= 2.0; x = (((((((((((((-0.000045255659 * y +0.000152529290) * y -0.000019538132) * y -0.000676904986) * y +0.001390604284) * y -0.000794620820) * y -0.002034254874) * y +0.006549791214) * y -0.010557625006) * y +0.011630447319) * y -0.009279453341) * y +0.005353579108) * y -0.002141268741) * y +0.000535310849) * y +0.999936657524; } } return (z > 0.0 ? ((x + 1.0) * 0.5) : ((1.0 - x) * 0.5)); } /*FUNCTION critz: compute critical z value to produce given probability */ /*ALGORITHM Begin with upper and lower limits for z values (maxz and minz) set to extremes. Choose a z value (zval) between the extremes. Compute the probability of the z value. Set minz or maxz, based on whether the probability is less than or greater than the desired p. Continue adjusting the extremes until they are within Z_EPSILON of each other. */ double /*VAR returns z such that fabs (poz(p) - z) <= .000001 */ critz (p) double p; /*VAR critical probability level */ { double minz = -Z_MAX; /* minimum of range of z */ double maxz = Z_MAX; /* maximum of range of z */ double zval = 0.0; /* computed/returned z value */ double poz (), pval; /* prob (z) function, pval := poz (zval) */ if (p <= 0.0 || p >= 1.0) return (0.0); while (maxz - minz > Z_EPSILON) { pval = poz (zval); if (pval > p) maxz = zval; else minz = zval; zval = (maxz + minz) * 0.5; } return (zval); } altree-v1.3.1/CUtils/c_sources/stats.c0000644000175000017500000001355212044751622020017 0ustar vdanjeanvdanjean #include "debug.h" #include "stats.h" #include "fisher.h" #include "chisq.h" #include "rhyper.h" #include #include #include #include #include struct classical_chi2_res classical_chi2(int nb_nodes, const struct cc *nodes) { struct classical_chi2_res res={ .chi2=0.0, .chi2invalid=0, .error=0, .sum_control=0, .sum_case=0, }; int i; for (i=0; i=Seuil_ONLY_CASE) { res.significatif=sign_util; } break; case 4: res.texte=msprintf("Only one clade"); break; // Manque plein de trucs par rapport à la fonction dans chi2tree... default: fprintf(stderr, "invalid error %i\n", res.error); } return res; } datatype_t p_value; int ddl=nb_nodes-1; if (r.chi2invalid == 0) { if (sign_util) { res.significatif=chi2_significatif(ddl, r.chi2); } p_value=1-gsl_cdf_chisq_P(r.chi2, ddl); } else { if (texte) { res.warning=msprintf("Small sample size correction used"); } // J'ai pas compté dans combien de branches... if (ddl == 1) { p_value=bilateral(nodes[0].cases, nodes[0].controls, nodes[1].cases, nodes[1].controls); if (sign_util) { res.significatif=chi2_fisher_significatif(p_value); } } else { p_value = reech_chi2(r.sum_case, r.sum_control, nb_nodes, r.chi2, nodes, th); res.warning=msprintfcat(res.warning," (%.6g)",p_value); if (sign_util) { res.significatif = reech_significatif(p_value); if (texte && res.significatif != chi2_significatif(ddl, r.chi2)) { res.warning=msprintfcat(res.warning," Result has changed !"); } } } } res.chi2=r.chi2; res.p_val=p_value; return res; } static datatype_t *chi2_seuil=NULL; static int nb_seuils=0; static datatype_t chi2_p=-1; static datatype_t test_prop_p=-1; //Utilisé aussi pour le test F void definition_p_chi2(datatype_t p, datatype_t pprop) { if (p != -1) { chi2_p=p; } if (pprop != -1) { test_prop_p=pprop; } } int chi2_significatif(int ddl, datatype_t chi2) { if (ddl < 1) { fprintf(stderr, "Warning: chi[%i] asked...\n", ddl); } if (ddl >= nb_seuils) { chi2_seuil = realloc(chi2_seuil, (ddl+1)*sizeof(datatype_t)); bzero(chi2_seuil+nb_seuils, (ddl+1-nb_seuils)*sizeof(datatype_t)); nb_seuils=ddl+1; } if (chi2_seuil[ddl]==0.0) { assert(chi2_p >= 0.0); chi2_seuil[ddl]=critchi(chi2_p, ddl); } return (chi2 > chi2_seuil[ddl]); } int chi2_fisher_significatif(datatype_t pvalue) // "Meme fonction pour le test F, je ne la ré-écris pas..." !?!? { return pvalue < chi2_p; } datatype_t reech_chi2(int sum_case, int sum_control, int nb_nodes, int chi2_reel, const struct cc *nodes, struct cc *th) { int sum_total=sum_case+sum_control; datatype_t p_val=0.0; int i,k; for(i=0; i= chi2_reel){ p_val++; } } //debug("pval=%g\n", p_val/PERM); return (p_val/PERM); } int reech_significatif(datatype_t p_val) { return (p_val<=chi2_p); } void random_clades(int nb_nodes, const struct cc *nodes, int cases, int controls, struct cc *clades) { bzero(clades, nb_nodes*sizeof(struct cc)); int c; for(c=0; c # define debug(str,...) fprintf(stderr, str "\n", ##__VA_ARGS__) #else # define debug(str,...) ((void)0) # define NDEBUG #endif #include #endif altree-v1.3.1/CUtils/c_sources/MYMETA.json0000644000175000017500000000142312252703404020372 0ustar vdanjeanvdanjean{ "abstract" : "unknown", "author" : [ "unknown" ], "dynamic_config" : 0, "generated_by" : "ExtUtils::MakeMaker version 6.66, CPAN::Meta::Converter version 2.120921", "license" : [ "unknown" ], "meta-spec" : { "url" : "http://search.cpan.org/perldoc?CPAN::Meta::Spec", "version" : "2" }, "name" : "ALTree-CUtils", "no_index" : { "directory" : [ "t", "inc" ] }, "prereqs" : { "build" : { "requires" : { "ExtUtils::MakeMaker" : "0" } }, "configure" : { "requires" : { "ExtUtils::MakeMaker" : "0" } }, "runtime" : { "requires" : {} } }, "release_status" : "stable", "version" : "" } altree-v1.3.1/CUtils/c_sources/mt19937ar.c0000644000175000017500000001670212044751251020237 0ustar vdanjeanvdanjean/* A C-program for MT19937, with initialization improved 2002/1/26. Coded by Takuji Nishimura and Makoto Matsumoto. Before using, initialize the state by using init_genrand(seed) or init_by_array(init_key, key_length). Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura, All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. The names of its contributors may not be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Any feedback is very welcome. http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/emt.html email: m-mat @ math.sci.hiroshima-u.ac.jp (remove space) */ #include #include "debug.h" #include "mt19937ar.h" /* Period parameters */ #define N MT19937AR_N /* 624 */ #define M 397 #define MATRIX_A 0x9908b0dfUL /* constant vector a */ #define UPPER_MASK 0x80000000UL /* most significant w-r bits */ #define LOWER_MASK 0x7fffffffUL /* least significant r bits */ static __thread mt19937ar_t local = { {0, }, /* the array for the state vector */ N+1, /* mti==N+1 means mt[N] is not initialized */ }; /* initializes mt[N] with a seed */ void init_genrand_mt(mt19937ar_t* p, unsigned long s) { int mti; unsigned long *mt=&p->mt[0]; debug("init init_genrand_mt(%li)", s); mt[0]= s & 0xffffffffUL; for (mti=1; mti> 30)) + mti); /* See Knuth TAOCP Vol2. 3rd Ed. P.106 for multiplier. */ /* In the previous versions, MSBs of the seed affect */ /* only MSBs of the array mt[]. */ /* 2002/01/09 modified by Makoto Matsumoto */ mt[mti] &= 0xffffffffUL; /* for >32 bit machines */ } p->mti=mti; } void init_genrand(unsigned long s) { init_genrand_mt(&local, s); } /* initialize by an array with array-length */ /* init_key is the array for initializing keys */ /* key_length is its length */ /* slight change for C++, 2004/2/26 */ void init_by_array_mt(mt19937ar_t* p, unsigned long init_key[], int key_length) { int i, j, k; unsigned long *mt=&p->mt[0]; debug("init init_by_array_mt"); init_genrand_mt(p, 19650218UL); i=1; j=0; k = (N>key_length ? N : key_length); for (; k; k--) { mt[i] = (mt[i] ^ ((mt[i-1] ^ (mt[i-1] >> 30)) * 1664525UL)) + init_key[j] + j; /* non linear */ mt[i] &= 0xffffffffUL; /* for WORDSIZE > 32 machines */ i++; j++; if (i>=N) { mt[0] = mt[N-1]; i=1; } if (j>=key_length) j=0; } for (k=N-1; k; k--) { mt[i] = (mt[i] ^ ((mt[i-1] ^ (mt[i-1] >> 30)) * 1566083941UL)) - i; /* non linear */ mt[i] &= 0xffffffffUL; /* for WORDSIZE > 32 machines */ i++; if (i>=N) { mt[0] = mt[N-1]; i=1; } } mt[0] = 0x80000000UL; /* MSB is 1; assuring non-zero initial array */ } void init_by_array(unsigned long init_key[], int key_length) { init_by_array_mt(&local, init_key, key_length); } /* generates a random number on [0,0xffffffff]-interval */ unsigned long genrand_int32_mt(mt19937ar_t* p) { unsigned long *mt=&p->mt[0]; unsigned long y; static const unsigned long mag01[2]={0x0UL, MATRIX_A}; /* mag01[x] = x * MATRIX_A for x=0,1 */ if (p->mti >= N) { /* generate N words at one time */ int kk; for (kk=0;kk> 1) ^ mag01[y & 0x1UL]; } for (;kk> 1) ^ mag01[y & 0x1UL]; } y = (mt[N-1]&UPPER_MASK)|(mt[0]&LOWER_MASK); mt[N-1] = mt[M-1] ^ (y >> 1) ^ mag01[y & 0x1UL]; p->mti = 0; } y = mt[p->mti++]; /* Tempering */ y ^= (y >> 11); y ^= (y << 7) & 0x9d2c5680UL; y ^= (y << 15) & 0xefc60000UL; y ^= (y >> 18); return y; } unsigned long genrand_int32(void) { if (local.mti == N+1) /* if init_genrand() has not been called, */ init_genrand(5489UL); /* a default initial seed is used */ return genrand_int32_mt(&local); } /* generates a random number on [0,0x7fffffff]-interval */ long genrand_int31(void) { return (long)(genrand_int32()>>1); } long genrand_int31_mt(mt19937ar_t* p) { return (long)(genrand_int32_mt(p)>>1); } /* generates a random number on [0,1]-real-interval */ double genrand_real1(void) { return genrand_int32()*(1.0/4294967295.0); /* divided by 2^32-1 */ } double genrand_real1_mt(mt19937ar_t* p) { return genrand_int32_mt(p)*(1.0/4294967295.0); /* divided by 2^32-1 */ } /* generates a random number on [0,1)-real-interval */ double genrand_real2(void) { return genrand_int32()*(1.0/4294967296.0); /* divided by 2^32 */ } double genrand_real2_mt(mt19937ar_t* p) { return genrand_int32_mt(p)*(1.0/4294967296.0); /* divided by 2^32 */ } /* generates a random number on (0,1)-real-interval */ double genrand_real3(void) { return (((double)genrand_int32()) + 0.5)*(1.0/4294967296.0); /* divided by 2^32 */ } double genrand_real3_mt(mt19937ar_t* p) { return (((double)genrand_int32_mt(p)) + 0.5)*(1.0/4294967296.0); /* divided by 2^32 */ } /* generates a random number on [0,1) with 53-bit resolution*/ double genrand_res53(void) { unsigned long a=genrand_int32()>>5, b=genrand_int32()>>6; return(a*67108864.0+b)*(1.0/9007199254740992.0); } double genrand_res53_mt(mt19937ar_t* p) { unsigned long a=genrand_int32_mt(p)>>5, b=genrand_int32_mt(p)>>6; return(a*67108864.0+b)*(1.0/9007199254740992.0); } /* These real versions are due to Isaku Wada, 2002/01/09 added */ #if 0 int main(void) { int i; unsigned long init[4]={0x123, 0x234, 0x345, 0x456}, length=4; init_by_array(init, length); printf("1000 outputs of genrand_int32()\n"); for (i=0; i<1000; i++) { printf("%10lu ", genrand_int32()); if (i%5==4) printf("\n"); } printf("\n1000 outputs of genrand_real2()\n"); for (i=0; i<1000; i++) { printf("%10.8f ", genrand_real2()); if (i%5==4) printf("\n"); } return 0; } #endif altree-v1.3.1/CUtils/c_sources/fisher.h0000644000175000017500000000032312043767151020141 0ustar vdanjeanvdanjean#ifndef _FISHER_H #define _FISHER_H double bilateral(double a, double b, double c, double d); double right(double a, double b, double c, double d); double left(double a, double b, double c, double d); #endif altree-v1.3.1/CUtils/c_sources/myrand.h0000644000175000017500000000014412044744753020160 0ustar vdanjeanvdanjean#ifndef _MYRAND_H #define _MYRAND_H int myrand_init(unsigned long value); int myrand(int); #endif altree-v1.3.1/CUtils/c_sources/myrand.c0000644000175000017500000000130312044751251020140 0ustar vdanjeanvdanjean#include "myrand.h" #include #include #include #include "debug.h" #define MT #ifdef MT # include "mt19937ar.h" # define MYRAND_MAX (0xffffffffUL) #else # define MYRAND_MAX RAND_MAX #endif int myrand_init(unsigned long value) { #ifdef MT init_genrand(value); #endif return 0; } static void init() __attribute__((constructor)); static void init() { #ifdef MT myrand_init(getpid()); #else srand(getpid()); #endif debug("init rand done"); } int myrand(int up) { for(;;) { #ifdef MT unsigned long r=genrand_int32(); #else int r=rand(); #endif if (r<=MYRAND_MAX-up) { return r%up; } if (r #include typedef struct { double bilateral; double left; double right; } result_t; static double lngamm(double z) // Reference: "Lanczos, C. 'A precision approximation // of the gamma function', J. SIAM Numer. Anal., B, 1, 86-96, 1964." // Translation of Alan Miller's FORTRAN-implementation // See http://lib.stat.cmu.edu/apstat/245 { double x = 0; x += 0.1659470187408462e-06/(z+7); x += 0.9934937113930748e-05/(z+6); x -= 0.1385710331296526 /(z+5); x += 12.50734324009056 /(z+4); x -= 176.6150291498386 /(z+3); x += 771.3234287757674 /(z+2); x -= 1259.139216722289 /(z+1); x += 676.5203681218835 /(z); x += 0.9999999999995183; return(log(x)-5.58106146679532777-z+(z-0.5)*log(z+6.5)); } static double lnfact(double n) { if(n<=1) return(0); return(lngamm(n+1)); } static double lnbico(double n,double k) { return(lnfact(n)-lnfact(k)-lnfact(n-k)); } static double hyper_323(double n11,double n1_,double n_1,double n) { return(exp(lnbico(n1_,n11)+lnbico(n-n1_,n_1-n11)-lnbico(n,n_1))); } static double sn11,sn1_,sn_1,sn,sprob; static double hyper0(double n11i,double n1_i,double n_1i,double ni) { if(!(n1_i||n_1i||ni)) { if(!(((long long)n11i) % 10 == 0)) { if(n11i==sn11+1) { sprob *= ((sn1_-sn11)/(n11i))*((sn_1-sn11)/(n11i+sn-sn1_-sn_1)); sn11 = n11i; return sprob; } if(n11i==sn11-1) { sprob *= ((sn11)/(sn1_-n11i))*((sn11+sn-sn1_-sn_1)/(sn_1-n11i)); sn11 = n11i; return sprob; } } sn11 = n11i; } else { sn11 = n11i; sn1_=n1_i; sn_1=n_1i; sn=ni; } sprob = hyper_323(sn11,sn1_,sn_1,sn); return sprob; } static double hyper(double n11) { return(hyper0(n11,0,0,0)); } static double sleft,sright,sless,slarg; static double exact(double n11,double n1_,double n_1,double n) { double p,i,j,prob; double max=n1_; double min; if(n_11) twotail=1; */ /* "Left : p-value = "+ left + newline + */ /* "Right : p-value = "+ right + newline + */ /* "2-Tail : p-value = "+ twotail + */ /* newline + "------------------------------------------"; */ /* } */ static result_t fisher(double n11, double n12, double n21, double n22) { result_t res; double n1_; double n_1; double n; //double prob; if(n11<0) n11 *= -1; if(n12<0) n12 *= -1; if(n21<0) n21 *= -1; if(n22<0) n22 *= -1; n1_ = n11+n12; n_1 = n11+n21; n = n11 +n12 +n21 +n22; //prob= exact(n11,n1_,n_1,n); res.bilateral=sleft+sright; res.left=sless; res.right=slarg; if (res.bilateral>1) res.bilateral=1; return res; } double bilateral(double a, double b, double c, double d) { result_t res=fisher(a,b,c,d); //return 1; return res.bilateral; } double right(double a, double b, double c, double d) { result_t res=fisher(a,b,c,d); return res.right; } double left(double a, double b, double c, double d) { result_t res=fisher(a,b,c,d); return res.left; } altree-v1.3.1/CUtils/c_sources/stats.h0000644000175000017500000000220312044250000017773 0ustar vdanjeanvdanjean#ifndef _STATS_H #define _STATS_H #include "datatype.h" #define SAMPLESIZE 5 #define Seuil_ONLY_CASE 3 #define PERM 1000 struct cc { datatype_t cases; datatype_t controls; }; struct classical_chi2_res { datatype_t chi2; int chi2invalid; int error; int sum_control; int sum_case; }; struct calcul_chi2_res { datatype_t chi2; datatype_t p_val; int error; int significatif; char *texte; char *warning; }; struct classical_chi2_res classical_chi2(int nb_nodes, const struct cc *nodes); struct calcul_chi2_res calcul_chi2(int nb_nodes, const struct cc *nodes, int sign_util, int texte, struct cc *th); void definition_p_chi2(datatype_t p, datatype_t pprop); int chi2_significatif(int ddl, datatype_t chi2); int chi2_fisher_significatif(datatype_t pvalue); /* nodes and th: array of size nb_nodes. nodes is input only, th is used internally */ datatype_t reech_chi2(int sum_case, int sum_control, int nb_nodes, int chi2_reel, const struct cc *nodes, struct cc *th); int reech_significatif(datatype_t p_val); void random_clades(int nb_nodes, const struct cc *nodes, int cases, int controls, struct cc *clades); #endif altree-v1.3.1/CUtils/c_sources/resampling.c0000644000175000017500000002010712252702500021004 0ustar vdanjeanvdanjean #include "debug.h" #include "resampling.h" #include #include #include #include #include #include "myrand.h" struct chi2s { int nb_leaves; struct cc*leaves; struct cc*th; int nb_nodes; int *stashed_nodes; int *next_nodes; struct cc*nodes; }; static void compute_chi2s(const struct tree *tree, const struct cc *lcc, struct chi2s *temp, int prolonge, datatype_t *results) { int first_leaf=0; int nb_next_nodes=0; int nb_stashed_nodes; assert(temp->nb_leaves==tree->nb_leaves); assert(temp->nb_nodes==tree->nb_nodes); bzero(temp->nodes, tree->nb_nodes*sizeof(struct cc)); bzero(temp->stashed_nodes, tree->nb_nodes*sizeof(int)); //debug("max_depth=%i, nb_leaves=%i, nb_nodes=%i", // tree->max_depth, tree->nb_leaves, tree->nb_nodes); int depth; for (depth=tree->max_depth; depth>0; depth--){ int nb_leaves=0; int next_first_leaf; int i; nb_stashed_nodes=0; for(i=0; inext_nodes[i]; temp->leaves[nb_leaves++]=temp->nodes[id]; int parent=tree->np[id]; if (parent != -1) { if (!temp->stashed_nodes[parent]) { temp->stashed_nodes[parent]=1; temp->next_nodes[nb_stashed_nodes++]=parent; } temp->nodes[parent].cases+=temp->nodes[id].cases; temp->nodes[parent].controls+=temp->nodes[id].controls; } } for(i=first_leaf; inb_leaves && tree->ld[i] == depth; i++) { temp->leaves[nb_leaves++]=lcc[i]; int parent=tree->lp[i]; if (parent != -1) { if (!temp->stashed_nodes[parent]) { temp->stashed_nodes[parent]=1; temp->next_nodes[nb_stashed_nodes++]=parent; } temp->nodes[parent].cases+=lcc[i].cases; temp->nodes[parent].controls+=lcc[i].controls; } } assert(nb_stashed_nodes <= tree->nb_leaves); next_first_leaf=i; if (prolonge == 1) { for(; inb_leaves; i++) { temp->leaves[nb_leaves++]=lcc[i]; } } nb_next_nodes=nb_stashed_nodes; first_leaf=next_first_leaf; //debug("depth=%i, ddl=%i", depth, nb_leaves-1); struct calcul_chi2_res r=calcul_chi2(nb_leaves, temp->leaves, 0, 0, temp->th); assert(r.error==0); results[depth-1]=r.chi2; } } struct paractl { volatile int permutation; int nb_permutations; const struct tree *tree; const struct cc *lcc; int cases; int controls; int prolonge; datatype_t *results; }; struct parainfo { struct paractl *ctl; int permutation; }; struct memory { struct cc *rand_lcc; struct chi2s temp; }; static struct memory *mem_alloc(const struct tree *tree) { struct memory *m=malloc(sizeof(struct memory)); m->rand_lcc=malloc(tree->nb_leaves*sizeof(struct cc)); m->temp=(struct chi2s){ .nb_leaves=tree->nb_leaves, .leaves=malloc(tree->nb_leaves*sizeof(struct cc)), .th=malloc(tree->nb_leaves*sizeof(struct cc)), .nb_nodes=tree->nb_nodes, .stashed_nodes=malloc(tree->nb_nodes*sizeof(int)), .next_nodes=malloc(tree->nb_nodes*sizeof(int)), .nodes=malloc(tree->nb_nodes*sizeof(struct cc)), }; return m; } static void free_alloc(struct memory *m) { free(m->temp.leaves); free(m->temp.th); free(m->temp.stashed_nodes); free(m->temp.next_nodes); free(m->temp.nodes); free(m->rand_lcc); } static void *resampling_worker(void* param) { struct parainfo *p=(struct parainfo *)param; /* Copy values for ro access, to avoid ping-pong with cache lines when updating permutation */ struct paractl data= *(p->ctl); int permutation=p->permutation; struct memory *mem=mem_alloc(data.tree); myrand_init(pthread_self()+getpid()); while (permutation < data.nb_permutations) { //debug("thread %i handle perm %i", p->permutation, permutation); random_clades(data.tree->nb_leaves, data.lcc, data.cases, data.controls, mem->rand_lcc); compute_chi2s(data.tree, mem->rand_lcc, &mem->temp, data.prolonge, data.results+(permutation * data.tree->max_depth)); permutation=__sync_fetch_and_add(&p->ctl->permutation, 1); } free_alloc(mem); return NULL; } /* From http://stackoverflow.com/questions/150355/programmatically-find-the-number-of-cores-on-a-machine */ static int nbproc() { int numCPU=0; #ifdef __linux numCPU = sysconf( _SC_NPROCESSORS_ONLN ); #elif defined(__bsd) int mib[4]; size_t len = sizeof(numCPU); /* set the mib for hw.ncpu */ mib[0] = CTL_HW; mib[1] = HW_AVAILCPU; // alternatively, try HW_NCPU; /* get the number of CPUs from the system */ sysctl(mib, 2, &numCPU, &len, NULL, 0); if( numCPU < 1 ) { mib[1] = HW_NCPU; sysctl( mib, 2, &numCPU, &len, NULL, 0 ); if( numCPU < 1 ) { numCPU = 1; } } #else # warning no support on this plate-form. Patch welcome. #endif return numCPU; } int resampling_chi2(const struct tree *tree, const struct cc *lcc, int prolonge, int nb_permutations, datatype_t *results, int parallel) { #if defined(DEBUG) && 0 FILE* dump=fopen("/tmp/dump", "w+"); fwrite(tree, sizeof(struct tree), 1, dump); fwrite(tree->ld, sizeof(int), tree->nb_leaves, dump); fwrite(tree->lp, sizeof(int), tree->nb_leaves, dump); fwrite(tree->np, sizeof(int), tree->nb_nodes, dump); fwrite(lcc, sizeof(struct cc), tree->nb_leaves, dump); fwrite(&prolonge, sizeof(int), 1, dump); fwrite(&nb_permutations, sizeof(int), 1, dump); fclose(dump); #endif char* envvar=getenv("ALTREE_PARALLEL"); if (envvar) { parallel=atoi(envvar); } if (parallel == -1) { parallel=nbproc(); } if (parallel < 0) { parallel=0; } debug("parallel=%i", parallel); struct memory *mem=mem_alloc(tree); compute_chi2s(tree, lcc, &mem->temp, prolonge, results); int i; int cases=0; int controls=0; for(i=0; inb_leaves; i++) { cases += lcc[i].cases; controls += lcc[i].controls; } if (!parallel) { for(i=0; imax_depth; random_clades(tree->nb_leaves, lcc, cases, controls, mem->rand_lcc); compute_chi2s(tree, mem->rand_lcc, &mem->temp, prolonge, results); } } else { struct paractl ctl = { .permutation=parallel, .nb_permutations=nb_permutations, .tree=tree, .lcc=lcc, .cases=cases, .controls=controls, .prolonge=prolonge, .results=results+tree->max_depth, }; struct parainfo infos[parallel]; pthread_t tids[parallel]; for(i=0; i 'ALTree::CUtils', SKIP => [qw(all static static_lib dynamic dynamic_lib)], clean => {'FILES' => 'libaltree-cutils$(LIB_EXT)'}, INC => '-Wall -I. -Ic_sources', ); sub MY::top_targets { ' all :: static pure_all :: static static :: libaltree-cutils$(LIB_EXT) libaltree-cutils$(LIB_EXT): $(O_FILES) $(AR) cr libaltree-cutils$(LIB_EXT) $(O_FILES) $(RANLIB) libaltree-cutils$(LIB_EXT) '; } altree-v1.3.1/CUtils/c_sources/chisq.c0000644000175000017500000001103312043315246017755 0ustar vdanjeanvdanjean/* Module: chisq.c Purpose: compute approximations to chisquare distribution probabilities Contents: pochisq(), critchi() Uses: poz() in z.c (Algorithm 209) Programmer: Gary Perlman Organization: Wang Institute, Tyngsboro, MA 01879 Tester: compile with -DCHISQTEST to include main program Copyright: none Tabstops: 4 */ /*LINTLIBRARY*/ #include #include "z.h" /*static char sccsfid[] = "@(#) chisq.c 5.2 (|stat) 12/08/86";*/ #define CHI_EPSILON 0.000001 /* accuracy of critchi approximation */ #define CHI_MAX 99999.0 /* maximum chi square value */ #define LOG_SQRT_PI 0.5723649429247000870717135 /* log (sqrt (pi)) */ #define I_SQRT_PI 0.5641895835477562869480795 /* 1 / sqrt (pi) */ #define BIGX 20.0 /* max value to represent exp (x) */ #define ex(x) (((x) < -BIGX) ? 0.0 : exp (x)) double pochisq (); double critchi (); #ifdef CHISQTEST double Prob[] = { .10, .05, .01, .005, .001, -1.0 }; main () { int df; int p; printf ("%-4s ", "df"); for (p = 0; Prob[p] > 0.0; p++) printf ("%8.3f ", Prob[p]); putchar ('\n'); for (df = 1; df < 30; df++) { printf ("%4d ", df); for (p = 0; Prob[p] > 0.0; p++) printf ("%8.3f ", critchi (Prob[p], df)); putchar ('\n'); } } #endif /* CHISQTEST */ #ifdef CHISQTEST2 #include #include double chi2 = .10; int main (int argc, char** argv) { int df; //int p; if (argc != 3) { printf("usage: %s chi2 df\n", argv[0]); exit(1); } chi2=atof(argv[1]); df=atoi(argv[2]); printf ("%lf\n", pochisq (chi2, df)); return 0; } #endif /* CHISQTEST */ /*FUNCTION pochisq: probability of chi sqaure value */ /*ALGORITHM Compute probability of chi square value. Adapted from: Hill, I. D. and Pike, M. C. Algorithm 299 Collected Algorithms for the CACM 1967 p. 243 Updated for rounding errors based on remark in ACM TOMS June 1985, page 185 */ double pochisq (x, df) double x; /* obtained chi-square value */ int df; /* degrees of freedom */ { double a, y, s; double e, c, z; double poz (); /* computes probability of normal z score */ int even; /* true if df is an even number */ if (x <= 0.0 || df < 1) return (1.0); a = 0.5 * x; even = (2*(df/2)) == df; if (df > 1) y = ex (-a); s = (even ? y : (2.0 * poz (-sqrt (x)))); if (df > 2) { x = 0.5 * (df - 1.0); z = (even ? 1.0 : 0.5); if (a > BIGX) { e = (even ? 0.0 : LOG_SQRT_PI); c = log (a); while (z <= x) { e = log (z) + e; s += ex (c*z-a-e); z += 1.0; } return (s); } else { e = (even ? 1.0 : (I_SQRT_PI / sqrt (a))); c = 0.0; while (z <= x) { e = e * (a / z); c = c + e; z += 1.0; } return (c * y + s); } } else return (s); } /*FUNCTION critchi: compute critical chi square value to produce given p */ double critchi (p, df) double p; int df; { double minchisq = 0.0; double maxchisq = CHI_MAX; double chisqval; if (p <= 0.0) return (maxchisq); else if (p >= 1.0) return (0.0); chisqval = df / sqrt (p); /* fair first value */ while (maxchisq - minchisq > CHI_EPSILON) { if (pochisq (chisqval, df) < p) maxchisq = chisqval; else minchisq = chisqval; chisqval = (maxchisq + minchisq) * 0.5; } return (chisqval); } altree-v1.3.1/CUtils/c_sources/double_permutation.h0000644000175000017500000000122712044040313022547 0ustar vdanjeanvdanjean#ifndef _DOUBLE_PERMUTATION_H #define _DOUBLE_PERMUTATION_H #include "datatype.h" typedef datatype_t *ensemble_t; typedef ensemble_t *matrice_t; typedef datatype_t *replicat_t; ensemble_t alloc_replicat(int nb_chi2); void free_replicat(ensemble_t rep); ensemble_t alloc_ensemble(int nb_sample); void free_ensemble(ensemble_t ens); matrice_t alloc_matrice(int nb_sample, int nb_chi2); void free_matrice(matrice_t mat, int nb_sample, int nb_chi2); datatype_t calcul(int nb_sample, int nb_chi2, matrice_t mat, replicat_t rep); datatype_t double_permutation(int nb_sample, int nb_chi2, matrice_t mat, replicat_t rep, ensemble_t ens_min_pval); #endif altree-v1.3.1/CUtils/c_sources/rhyper.c0000644000175000017500000002720312044756070020172 0ustar vdanjeanvdanjean/* * Mathlib : A C Library of Special Functions * Copyright (C) 1998 Ross Ihaka * Copyright (C) 2000-2012 The R Core Team * Copyright (C) 2005 The R Foundation * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, a copy is available at * http://www.r-project.org/Licenses/ * * SYNOPSIS * * #include * double rhyper(double NR, double NB, double n); * * DESCRIPTION * * Random variates from the hypergeometric distribution. * Returns the number of white balls drawn when kk balls * are drawn at random from an urn containing nn1 white * and nn2 black balls. * * REFERENCE * * V. Kachitvichyanukul and B. Schmeiser (1985). * ``Computer generation of hypergeometric random variates,'' * Journal of Statistical Computation and Simulation 22, 127-145. * * The original algorithm had a bug -- R bug report PR#7314 -- * giving numbers slightly too small in case III h2pe * where (m < 100 || ix <= 50) , see below. */ #include "mt19937ar.h" #include "debug.h" #include "stdio.h" #include "stdlib.h" #include #include "rhyper.h" /* afc(i) := ln( i! ) [logarithm of the factorial i. * If (i > 7), use Stirling's approximation, otherwise use table lookup. */ static double afc(int i) { static int computed=10; static double al[1756] = { 0.0, 0,/*ln(0!)*/ 0,/*ln(1!)*/ 0.693147180559945309,/*ln(2!)*/ 1.791759469228055,/*ln(3!)*/ 3.17805383034794562,/*ln(4!)*/ 4.78749174278204599,/*ln(5!)*/ 6.579251212010101,/*ln(6!)*/ 8.5251613610654143,/*ln(7!)*/ 10.6046029027452502,/*ln(8!)*/ 12.8018274800814696,/*ln(9!)*/ 15.1044125730755153,/*ln(10!)*/ }; double compute(int n) { static long double cur=3628800; static int i=11; static volatile int mutex=0; while (__sync_lock_test_and_set(&mutex, 1)) { /* Internal loop with only read to avoid cache line ping-pong on multi-processors */ while(mutex) { /* spinlock */ } } for(; i<=n; i++) { cur*=i; al[i+1]=logl(cur); } computed=n; __sync_lock_release(&mutex); return al[i]; }; double di, value; if (i < 0) { fprintf(stderr, "rhyper.c: afc(i), i=%d < 0 -- SHOULD NOT HAPPEN!\n", i); exit(1); } else if (i <= computed) { value = al[i + 1]; } else if (i <= 1754) { value = compute(i); } else { di = i; value = (di + 0.5) * log(di) - di + 0.08333333333333 / di - 0.00277777777777 / di / di / di + 0.9189385332; } return value; } #define imin2(a,b) ({ \ typeof(a) _a=(a); \ typeof(b) _b=(b); \ (_a < _b) ? _a : _b ;\ }) #define imax2(a,b) ({ \ typeof(a) _a=(a); \ typeof(b) _b=(b); \ (_a > _b) ? _a : _b ;\ }) #define unif_rand() genrand_real2() int rhyper(int nn1, int nn2, int kk) { const static double con = 57.56462733; const static double deltal = 0.0078; const static double deltau = 0.0034; const static double scale = 1e25; /* extern double afc(int); */ int i, ix; int reject, setup1, setup2; double e, f, g, p, r, t, u, v, y; double de, dg, dr, ds, dt, gl, gu, nk, nm, ub; double xk, xm, xn, y1, ym, yn, yk, alv; /* These should become `thread_local globals' : */ //int ks = -1; //int n1s = -1, n2s = -1; int k, m; int minjx, maxjx, n1, n2; double a, d, s, w; double tn, xl, xr, kl, kr, lamdl, lamdr, p1, p2, p3; /* check parameter validity */ if (nn1 < 0 || nn2 < 0 || kk < 0 || kk > nn1 + nn2) return -1; /* if new parameter values, initialize */ reject = 1; //if (nn1 != n1s || nn2 != n2s) { setup1 = 1; setup2 = 1; /*} else if (kk != ks) { setup1 = 0; setup2 = 1; } else { setup1 = 0; setup2 = 0; }*/ if (setup1) { //n1s = nn1; //n2s = nn2; tn = nn1 + nn2; if (nn1 <= nn2) { n1 = nn1; n2 = nn2; } else { n1 = nn2; n2 = nn1; } } if (setup2) { //ks = kk; if (kk + kk >= tn) { k = (int)(tn - kk); } else { k = kk; } } if (setup1 || setup2) { m = (int) ((k + 1.0) * (n1 + 1.0) / (tn + 2.0)); minjx = imax2(0, k - n2); maxjx = imin2(n1, k); } /* generate random variate --- Three basic cases */ if (minjx == maxjx) { /* I: degenerate distribution ---------------- */ ix = maxjx; /* return ix; No, need to unmangle */ /* return appropriate variate */ if (kk + kk >= tn) { if (nn1 > nn2) { ix = kk - nn2 + ix; } else { ix = nn1 - ix; } } else { if (nn1 > nn2) ix = kk - ix; } //debug("RHYPER: (%i, %i, %i)=%i", nn1, nn2, kk, ix); assert(ix <= nn1); assert(kk-ix <= nn2); assert(ix <= kk); assert(0 <= ix); return ix; } else if (m - minjx < 10) { /* II: inverse transformation ---------- */ if (setup1 || setup2) { if (k < n2) { w = exp(con + afc(n2) + afc(n1 + n2 - k) - afc(n2 - k) - afc(n1 + n2)); } else { w = exp(con + afc(n1) + afc(k) - afc(k - n2) - afc(n1 + n2)); } } L10: p = w; ix = minjx; u = unif_rand() * scale; L20: if (u > p) { u -= p; p *= (n1 - ix) * (k - ix); ix++; p = p / ix / (n2 - k + ix); if (ix > maxjx) goto L10; goto L20; } } else { /* III : h2pe --------------------------------------------- */ if (setup1 || setup2) { s = sqrt((tn - k) * k * n1 * n2 / (tn - 1) / tn / tn); /* remark: d is defined in reference without int. */ /* the truncation centers the cell boundaries at 0.5 */ d = (int) (1.5 * s) + .5; xl = m - d + .5; xr = m + d + .5; a = afc(m) + afc(n1 - m) + afc(k - m) + afc(n2 - k + m); kl = exp(a - afc((int) (xl)) - afc((int) (n1 - xl)) - afc((int) (k - xl)) - afc((int) (n2 - k + xl))); kr = exp(a - afc((int) (xr - 1)) - afc((int) (n1 - xr + 1)) - afc((int) (k - xr + 1)) - afc((int) (n2 - k + xr - 1))); lamdl = -log(xl * (n2 - k + xl) / (n1 - xl + 1) / (k - xl + 1)); lamdr = -log((n1 - xr + 1) * (k - xr + 1) / xr / (n2 - k + xr)); p1 = d + d; p2 = p1 + kl / lamdl; p3 = p2 + kr / lamdr; } L30: u = unif_rand() * p3; v = unif_rand(); if (u < p1) { /* rectangular region */ ix = (int) (xl + u); } else if (u <= p2) { /* left tail */ ix = (int) (xl + log(v) / lamdl); if (ix < minjx) goto L30; v = v * (u - p1) * lamdl; } else { /* right tail */ ix = (int) (xr - log(v) / lamdr); if (ix > maxjx) goto L30; v = v * (u - p2) * lamdr; } /* acceptance/rejection test */ if (m < 100 || ix <= 50) { /* explicit evaluation */ /* The original algorithm (and TOMS 668) have f = f * i * (n2 - k + i) / (n1 - i) / (k - i); in the (m > ix) case, but the definition of the recurrence relation on p134 shows that the +1 is needed. */ f = 1.0; if (m < ix) { for (i = m + 1; i <= ix; i++) f = f * (n1 - i + 1) * (k - i + 1) / (n2 - k + i) / i; } else if (m > ix) { for (i = ix + 1; i <= m; i++) f = f * i * (n2 - k + i) / (n1 - i + 1) / (k - i + 1); } if (v <= f) { reject = 0; } } else { /* squeeze using upper and lower bounds */ y = ix; y1 = y + 1.0; ym = y - m; yn = n1 - y + 1.0; yk = k - y + 1.0; nk = n2 - k + y1; r = -ym / y1; s = ym / yn; t = ym / yk; e = -ym / nk; g = yn * yk / (y1 * nk) - 1.0; dg = 1.0; if (g < 0.0) dg = 1.0 + g; gu = g * (1.0 + g * (-0.5 + g / 3.0)); gl = gu - .25 * (g * g * g * g) / dg; xm = m + 0.5; xn = n1 - m + 0.5; xk = k - m + 0.5; nm = n2 - k + xm; ub = y * gu - m * gl + deltau + xm * r * (1. + r * (-0.5 + r / 3.0)) + xn * s * (1. + s * (-0.5 + s / 3.0)) + xk * t * (1. + t * (-0.5 + t / 3.0)) + nm * e * (1. + e * (-0.5 + e / 3.0)); /* test against upper bound */ alv = log(v); if (alv > ub) { reject = 1; } else { /* test against lower bound */ dr = xm * (r * r * r * r); if (r < 0.0) dr /= (1.0 + r); ds = xn * (s * s * s * s); if (s < 0.0) ds /= (1.0 + s); dt = xk * (t * t * t * t); if (t < 0.0) dt /= (1.0 + t); de = nm * (e * e * e * e); if (e < 0.0) de /= (1.0 + e); if (alv < ub - 0.25 * (dr + ds + dt + de) + (y + m) * (gl - gu) - deltal) { reject = 0; } else { /* * Stirling's formula to machine accuracy */ if (alv <= (a - afc(ix) - afc(n1 - ix) - afc(k - ix) - afc(n2 - k + ix))) { reject = 0; } else { reject = 1; } } } } if (reject) goto L30; } /* return appropriate variate */ if (kk + kk >= tn) { if (nn1 > nn2) { ix = kk - nn2 + ix; } else { ix = nn1 - ix; } } else { if (nn1 > nn2) ix = kk - ix; } //debug("RHYPER: (%i, %i, %i)=%i", nn1, nn2, kk, ix); assert(ix <= nn1); assert(kk-ix <= nn2); assert(ix <= kk); assert(0 <= ix); return ix; } #if TEST_AFC static double origafc(int i) { const static double al[9] = { 0.0, 0.0,/*ln(0!)=ln(1)*/ 0.0,/*ln(1!)=ln(1)*/ 0.69314718055994530941723212145817,/*ln(2) */ 1.79175946922805500081247735838070,/*ln(6) */ 3.17805383034794561964694160129705,/*ln(24)*/ 4.78749174278204599424770093452324, 6.57925121201010099506017829290394, 8.52516136106541430016553103634712 /*, 10.60460290274525022841722740072165*/ }; double di, value; if (i < 0) { fprintf(stderr, "rhyper.c: afc(i), i=%d < 0 -- SHOULD NOT HAPPEN!\n", i); exit(1); } else if (i <= 7) { value = al[i + 1]; } else { di = i; value = (di + 0.5) * log(di) - di + 0.08333333333333 / di - 0.00277777777777 / di / di / di + 0.9189385332; } return value; } static double afc2(int n) { static const double logpi=__builtin_log(M_PI); return n*log(n)-n+log(n*(1+4*n*(1+2*n)))/6+logpi/2; } static double afc3(int n) { static const double logpi=__builtin_log(M_PI); return n*log(n)-n+log(1+1/(2*n)+1/(8*n*n))/6+log(2*n)/2+logpi/2; } static double afc4(int n) { static const double logpi=__builtin_log(M_PI); static const double log2=__builtin_log(2); double logn=log(n); return n*logn-n+log(1+1/(2*n)+1/(8*n*n))/6+(logn+(logpi+log2))/2; } static double afc5(int n) { static long long int cur=1; static int i=1; for(; i<=n; i++) { cur*=i; } //printf(" %lli %i %i ", cur, i, n); return log(cur); } static double afc6(int n) { static long double cur=1; static int i=1; for(; i<=n; i++) { cur*=i; } //printf(" %lli %i %i ", cur, i, n); return logl(cur); } static double afc7(int n) { static long double cur=1; static int i=1; for(; i<=n; i++) { cur*=i; } //printf(" %lli %i %i ", cur, i, n); printf("\t%.18Lg, /* ln(%i!) = ln(%.0Lf) */\n",logl(cur),n,cur); return logl(cur); } static void compare(int k) { int i; printf(" %20s / %20s / %23s / %23s / %23s / %23sg / \n", "ref=exact(long double)", "my", "orig-ref", "orig-my", "my-ref", "exact(double)-ref"); for (i=1; i<=k; i++) { double ref=afc6(i); double ref2=afc(i); printf("log %4i! = %20.17lg / %20.17lg / %13.7lg / %13.7lg / %13.7lg / %13.7lg / %13.7lg / %13.7lg / %13.7lg\n", i, ref, ref2, origafc(i)-ref, origafc(i)-ref2, afc(i)-ref, afc5(i)-ref, afc2(i)-ref, afc3(i)-ref, afc4(i)-ref); } for (i=1; i<=50; i++) { afc7(i); } return; } int main(int argc, char**argv) { compare(1755); return 0; } #endif altree-v1.3.1/CUtils/c_sources/mt19937ar.h0000644000175000017500000000672512044751251020250 0ustar vdanjeanvdanjean/* A C-program for MT19937, with initialization improved 2002/1/26. Coded by Takuji Nishimura and Makoto Matsumoto. Before using, initialize the state by using init_genrand(seed) or init_by_array(init_key, key_length). Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura, All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. The names of its contributors may not be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Any feedback is very welcome. http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/emt.html email: m-mat @ math.sci.hiroshima-u.ac.jp (remove space) */ #ifndef _MT19937AR_H #define _MT19937AR_H #ifdef __cplusplus extern "C" { #endif typedef struct { #define MT19937AR_N 624 unsigned long mt[MT19937AR_N]; /* the array for the state vector */ int mti; /* mti==N+1 means mt[N] is not initialized */ } mt19937ar_t; /* initializes mt[N] with a seed */ void init_genrand(unsigned long s); void init_genrand_mt(mt19937ar_t* priv, unsigned long s); /* initialize by an array with array-length */ /* init_key is the array for initializing keys */ /* key_length is its length */ /* slight change for C++, 2004/2/26 */ void init_by_array(unsigned long init_key[], int key_length); void init_by_array_mt(mt19937ar_t* priv, unsigned long init_key[], int key_length); /* generates a random number on [0,0xffffffff]-interval */ unsigned long genrand_int32(void); unsigned long genrand_int32_mt(mt19937ar_t* priv); /* generates a random number on [0,0x7fffffff]-interval */ long genrand_int31(void); long genrand_int31_mt(mt19937ar_t* priv); /* generates a random number on [0,1]-real-interval */ double genrand_real1(void); double genrand_real1_mt(mt19937ar_t* priv); /* generates a random number on [0,1)-real-interval */ double genrand_real2(void); double genrand_real2_mt(mt19937ar_t* priv); /* generates a random number on (0,1)-real-interval */ double genrand_real3(void); double genrand_real3_mt(mt19937ar_t* priv); /* generates a random number on [0,1) with 53-bit resolution*/ double genrand_res53(void); double genrand_res53_mt(mt19937ar_t* priv); #ifdef __cplusplus } #endif #endif altree-v1.3.1/CUtils/lib/0000755000175000017500000000000012252703410015261 5ustar vdanjeanvdanjeanaltree-v1.3.1/CUtils/lib/ALTree/0000755000175000017500000000000012252703410016375 5ustar vdanjeanvdanjeanaltree-v1.3.1/CUtils/lib/ALTree/CUtils.pm0000644000175000017500000000601112043315246020140 0ustar vdanjeanvdanjeanpackage ALTree::CUtils; use 5.008; use strict; use warnings; use Carp; require Exporter; use AutoLoader; our @ISA = qw(Exporter); # Items to export into callers namespace by default. Note: do not export # names by default without a very good reason. Use EXPORT_OK instead. # Do not simply export all your public functions/methods/constants. # This allows declaration use ALTree::CUtils ':all'; # If you do not need this, moving things directly into @EXPORT or @EXPORT_OK # will save memory. our %EXPORT_TAGS = ( 'all' => [ qw( bilateral critchi left pochisq right ) ] ); our @EXPORT_OK = ( @{ $EXPORT_TAGS{'all'} } ); our @EXPORT = qw( ); our $VERSION = '1.1'; sub AUTOLOAD { # This AUTOLOAD is used to 'autoload' constants from the constant() # XS function. my $constname; our $AUTOLOAD; ($constname = $AUTOLOAD) =~ s/.*:://; croak "&ALTree::CUtils::constant not defined" if $constname eq 'constant'; my ($error, $val) = constant($constname); if ($error) { croak $error; } { no strict 'refs'; # Fixed between 5.005_53 and 5.005_61 #XXX if ($] >= 5.00561) { #XXX *$AUTOLOAD = sub () { $val }; #XXX } #XXX else { *$AUTOLOAD = sub { $val }; #XXX } } goto &$AUTOLOAD; } require XSLoader; XSLoader::load('ALTree::CUtils', $VERSION); # Preloaded methods go here. # Autoload methods go after =cut, and are processed by the autosplit program. 1; __END__ # Below is stub documentation for your module. You'd better edit it! =head1 NAME ALTree::CUtils - Perl extension for blah blah blah =head1 SYNOPSIS use ALTree::CUtils; blah blah blah =head1 DESCRIPTION Stub documentation for ALTree::CUtils, created by h2xs. It looks like the author of the extension was negligent enough to leave the stub unedited. Blah blah blah. =head2 EXPORT None by default. =head2 Exportable functions double bilateral(double a, double b, double c, double d) double critchi(double p, int df) double left(double a, double b, double c, double d) double pochisq(double x, int df) double right(double a, double b, double c, double d) hash_ref double_permutation(int nb_sample, int nb_chi2, array_ref data) data : array of nb_sample*nb_chi2 doubles chi2_0_of_sample_0, chi2_1_of_sample_0, ..., chi2_0_of_sample_1, ... return keys: pmin => double chi2 => array of doubles =head1 SEE ALSO Mention other useful documentation such as the documentation of related modules or operating system documentation (such as man pages in UNIX), or any relevant external documentation such as RFCs or standards. If you have a mailing list set up for your module, mention it here. If you have a web site set up for your module, mention it here. =head1 AUTHOR Claire Bardel, EClaire.Bardel@univ-lyon1.frE =head1 COPYRIGHT AND LICENSE Copyright (C) 2005 by Claire Bardel This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.4 or, at your option, any later version of Perl 5 you may have available. =cut altree-v1.3.1/CUtils/Makefile.PL0000644000175000017500000000372612045222762016503 0ustar vdanjeanvdanjeanuse 5.008; use ExtUtils::MakeMaker; # See lib/ExtUtils/MakeMaker.pm for details of how to influence # the contents of the Makefile that is written. WriteMakefile( NAME => 'ALTree::CUtils', VERSION_FROM => 'lib/ALTree/CUtils.pm', # finds $VERSION PREREQ_PM => {}, # e.g., Module::Name => 1.1 ($] >= 5.005 ? ## Add these new keywords supported since 5.005 (ABSTRACT_FROM => 'lib/ALTree/CUtils.pm', # retrieve abstract from module AUTHOR => 'Claire Bardel ') : ()), LIBS => ['-lm -lpthread -lgsl -lcblas'], # e.g., '-lm' DEFINE => '', # e.g., '-DHAVE_SOMETHING' INC => '-ggdb3 -I. -Ic_sources', # e.g., '-I. -I/usr/include/other' # Un-comment this if you add C files to link with later: # OBJECT => '$(O_FILES)', # link all the C files too MYEXTLIB => 'c_sources/libaltree-cutils$(LIB_EXT)', ); if (eval {require ExtUtils::Constant; 1}) { # If you edit these definitions to change the constants used by this module, # you will need to use the generated const-c.inc and const-xs.inc # files to replace their "fallback" counterparts before distributing your # changes. my @names = (qw()); ExtUtils::Constant::WriteConstants( NAME => 'ALTree::CUtils', NAMES => \@names, DEFAULT_TYPE => 'IV', C_FILE => 'const-c.inc', XS_FILE => 'const-xs.inc', ); } else { use File::Copy; use File::Spec; foreach my $file ('const-c.inc', 'const-xs.inc') { my $fallback = File::Spec->catfile('fallback', $file); copy ($fallback, $file) or die "Can't copy $fallback to $file: $!"; } } sub MY::postamble { ' $(MYEXTLIB): c_sources/Makefile $(MAKE) -C c_sources $(PASSTHRU) '; }