pax_global_header00006660000000000000000000000064141211233750014511gustar00rootroot0000000000000052 comment=c48283d86f39a1aaf420e4ec98d8e9e51e34a0bc ALTree-v1.3.2/000077500000000000000000000000001412112337500130165ustar00rootroot00000000000000ALTree-v1.3.2/.gitignore000066400000000000000000000001431412112337500150040ustar00rootroot00000000000000Makefile Makefile.old *.o lib*.a pm_to_blib MYMETA.yml /blib/ /CUtils/CUtils.bs /CUtils/CUtils.c ALTree-v1.3.2/ALTree/000077500000000000000000000000001412112337500141325ustar00rootroot00000000000000ALTree-v1.3.2/ALTree/Base.pm000066400000000000000000000005261412112337500153450ustar00rootroot00000000000000package ALTree::Base; ########################################### ######## MAIN DATA STRUCTURES ######### ########################################### sub _init { my $self=shift; if (@_) { my %extra = @_; @$self{keys %extra} = values %extra; } } sub Debug { my $self=shift; #print STDERR @_; } 1; ALTree-v1.3.2/ALTree/Chi2.pm000066400000000000000000000055211412112337500152600ustar00rootroot00000000000000package ALTree::Chi2; use strict; use ALTree::CUtils; BEGIN { use Exporter (); our ($VERSION, @ISA, @EXPORT, @EXPORT_OK, %EXPORT_TAGS); # set the version for version checking $VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); # sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(NON_SIGNIFICATIF SIGNIFICATIF &chi2_significatif &definition_p_chi2 &reech_chi2); #%EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(); } #our @EXPORT_OK; INIT { } # exported package globals go here #our $Var1; #our %Hashit; # non-exported package globals go here #our @more; #our $stuff; # initialize package globals, first exported ones #$Var1 = ''; #%Hashit = (); # then the others (which are still accessible as $Some::Module::stuff) #$stuff = ''; #@more = (); # all file-scoped lexicals must be created before # the functions below that use them. # file-private lexicals go here #my $priv_var = ''; #my %secret_hash = (); # here's a file-private function as a closure, # callable as &$priv_func; it cannot be prototyped. #my $priv_func = sub { # # stuff goes here. #}; # make all your functions, whether exported or not; # remember to put something interesting in the {} stubs #sub func1 {} # no prototype #sub func2() {} # proto'd void #sub func3($$) {} # proto'd to 2 scalars # this one isn't exported, but could be called! #sub func4(\%) {} # proto'd to 1 hash ref END { } # module clean-up code here (global destructor) use constant NON_SIGNIFICATIF => 0; use constant SIGNIFICATIF => 1; ################################################################## # Fonctions de seuil du chi2 (pré-calcul puis stockage dans un tableau) # test de significativité. Doit retourner vrai ou faux. sub chi2_significatif { my ($ddl) = shift; my ($chi2) = shift; return ALTree::CUtils::Chi2Significatif($ddl, $chi2); } sub definition_p_chi2 #Utilisé aussi pour le test F { my($p)=shift; my($pprop)=shift; ALTree::CUtils::DefinitionPChi2($p, $pprop); } sub chi2_fisher_significatif { my($pvalue)=shift; return ALTree::CUtils::Chi2FisherSignificatif($pvalue); } ################################################################## # Rééchantillonnage sub reech_chi2 { my $sum_malade=shift; my $sum_controle=shift; my $nb_fils=shift; my($chi2_reel)=shift; my $clades=shift; return ALTree::CUtils::ReechChi2($sum_malade, $sum_controle, $nb_fils, $chi2_reel, $clades); } sub reech_significatif { my($p_val)=shift; return ALTree::CUtils::ReechSignificatif($p_val) } 1; ALTree-v1.3.2/ALTree/Foret.pm000066400000000000000000000054011412112337500155470ustar00rootroot00000000000000package ALTree::Foret; ################################################################ ################################################################ ####################### Foret ######################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::SiteCollection); sub New { # [classe] my $class=shift; my $self={}; bless($self, $class); $self->InitSiteCollection(); $self->_init(@_); $self->Debug("creating Foret\n"); return $self; } sub AddTree { my $self=shift; push @{$self->{"trees"}}, @_; } sub GetTree { my $self=shift; my $index=shift; return $self->{"trees"}->[$index]; } sub GetTreesList { my $self=shift; return @{$self->{"trees"}}; } sub ProvideSite { my $self=shift; my $site_nb=shift; if (not $self->HasSiteIndex($site_nb)) { $self->AddSite(ALTree::SitePerForet->New($site_nb)); } return $self->GetSite($site_nb); } sub CalculVi { my $self=shift; foreach my $tree ($self->GetTreesList()) { foreach my $site ($tree->GetSitesList()) { foreach my $sens ($site->GetSensList()) { $self->ProvideSite($site->GetSiteNb()) ->ProvideSens($sens->GetSensStruct()) ->PlusVi($sens->GetVit()); } } } } sub _EnsureViMax { my($self)=shift; if (not exists ($self->{"V_i_max"})) { my @tab_trie=sort { $b->GetViMax() <=> $a->GetViMax()} $self->GetSitesList(); $self->{"V_i_max"}=$tab_trie[0]->GetViMax(); $self->{"V_i_max_tab"}=\@tab_trie; } } sub GetViMax { my $self=shift; $self->_EnsureViMax(); return $self->{"V_i_max"}; } sub GetViMaxSite { my($self)=shift; my($index)=shift; $self->_EnsureViMax(); return $self->{"V_i_max_tab"}->[$index]; } sub GetViMaxSiteList { my($self)=shift; $self->_EnsureViMax(); return @{$self->{"V_i_max_tab"}}; } sub NbViMaxSite { my($self)=shift; $self->_EnsureViMax(); return (scalar @{$self->{"V_i_max_tab"}}); } sub _EnsureViMaxSens { my($self)=shift; if (not exists ($self->{"V_i_max_sens_tab"})) { my @tab_trie=sort { $b->GetVi() <=> $a->GetVi() } map { $_->GetSensList(); } $self->GetSitesList(); #if ($tab_trie[0]->GetVi() != $self->GetViMax()) { # die "Arghh\n"; #} $self->{"V_i_max_sens_tab"}=\@tab_trie; } } sub GetViMaxSens { my($self)=shift; my($index)=shift; $self->_EnsureViMaxSens(); return $self->{"V_i_max_sens_tab"}->[$index]; } sub GetViMaxSensList { my($self)=shift; $self->_EnsureViMaxSens(); return @{$self->{"V_i_max_sens_tab"}}; } sub NbViMaxSens { my($self)=shift; $self->_EnsureViMaxSens(); return (scalar @{$self->{"V_i_max_sens_tab"}}); } 1; ALTree-v1.3.2/ALTree/Import.pm000066400000000000000000000037521412112337500157510ustar00rootroot00000000000000package ALTree::Import; use strict; use ALTree::Utils; use ALTree::Input; use ALTree::Sens; use ALTree::Tree; use ALTree::Foret; use ALTree::Node; use ALTree::SitePerTree; use ALTree::SitePerForet; use ALTree::SiteSensPerForet; BEGIN { use Exporter (); our ($VERSION, @ISA, @EXPORT, @EXPORT_OK, %EXPORT_TAGS); # set the version for version checking $VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); # sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(); #%EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(); } #our @EXPORT_OK; INIT { } # exported package globals go here #our $Var1; #our %Hashit; # non-exported package globals go here #our @more; #our $stuff; # initialize package globals, first exported ones #$Var1 = ''; #%Hashit = (); # then the others (which are still accessible as $Some::Module::stuff) #$stuff = ''; #@more = (); # all file-scoped lexicals must be created before # the functions below that use them. # file-private lexicals go here #my $priv_var = ''; #my %secret_hash = (); # here's a file-private function as a closure, # callable as &$priv_func; it cannot be prototyped. #my $priv_func = sub { # # stuff goes here. #}; # make all your functions, whether exported or not; # remember to put something interesting in the {} stubs #sub func1 {} # no prototype #sub func2() {} # proto'd void #sub func3($$) {} # proto'd to 2 scalars # this one isn't exported, but could be called! #sub func4(\%) {} # proto'd to 1 hash ref END { } # module clean-up code here (global destructor) ################################################################## # Fonctions de seuil du chi2 (pré-calcul puis stockage dans un tableau) 1; ALTree-v1.3.2/ALTree/Input.pm000066400000000000000000000577111412112337500156020ustar00rootroot00000000000000package ALTree::Input; use strict; BEGIN { use Exporter (); use vars qw($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS); # set the version for version checking #$VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(); #(&func1 &func2 &func4); %EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(&ReadCorrespond &PrepareTree); } use vars @EXPORT_OK; use ALTree::Utils qw(erreur); use Data::Dumper; ########################################### ######## Read file fonctions ######### ########################################### #Read the file correspond.txt and put haplotype ID, nb case and nb #controle in a hash: $correspondance{$HaploID}->{"case"} and #$correspondance{$HaploID}->{"controle"} sub ReadCorrespondQuali { my($name_correspond) =shift; my($ligne, @tableau); my(%correspondance); open (CORRESP, '<', $name_correspond) or erreur("Unable to read file '$name_correspond': $!\n", 0); while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*$/) { next; } # On peut mettre '#' ou ';' pour introduire une ligne de commentaire my $di="#"; if ($ligne =~ /^\s*[$di;]/) { next; } @tableau=split(/\s+/, $ligne); if ($#tableau != 2) { ALTree::Utils::erreur("I do not find 3 columns in $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n",0); } my $id=shift @tableau; if ($id !~ /^[a-zA-Z0-9]+$/) { ALTree::Utils::erreur("The haplotype name '$id' contains unauthorized". " characters\nin $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n",0); } for(my $i=0; $i<2; $i++) { $_=shift @tableau; my $value=0; my $type; if (/^([a-zA-Z]+)_?([0-9]+)$/) { $type=$1; $value += $2; } else { ALTree::Utils::erreur("I do not understand '$_' in $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n", 0); } $_=$type; if (/^(m(alade(s)?)?)|(case(s)?)$/) { $type="case"; } elsif (/^c(ontrols?)?$/) { $type="control"; } else { ALTree::Utils::erreur("I do not understand '$_' in $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n", 0); } if (defined($correspondance{$id}->{$type})) { ALTree::Utils::erreur("For the second time, I read the number of". " ${type}s of '$id'\nin file '$name_correspond' at". " line $.:\n$ligne\nPlease, check the syntax.\n", 0); } $correspondance{$id}->{$type}=$value; } } #my($clefs); #DEBUG #foreach $clefs (keys %correspondance) { #print "$clefs case: ", $correspondance{$clefs}->{"case"}, "\n"; # print "$clefs, control: ",$correspondance{$clefs}->{"control"}, "\n"; #} return(\%correspondance); } #Read the file correspond.txt and put haplotype ID... (to be continued) sub ReadCorrespondQuanti { my($name_correspond) =shift; my($ligne, @tableau); my($correspondance); open (CORRESP, '<', $name_correspond) or erreur("Unable to read file '$name_correspond': $!\n", 0); my $numhaplo=0; while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*$/) { next; } # On peut mettre '#' ou ';' pour introduire une ligne de commentaire my $di="#"; if ($ligne =~ /^\s*[$di;]/) { next; } @tableau=split(/\s+/, $ligne); $numhaplo++; my $id=shift @tableau; if ($id !~ /^[a-zA-Z0-9]+$/) { ALTree::Utils::erreur("The haplotype name '$id' contains". "unauthorized characters\n". "in $name_correspond at". " line $.:\n$ligne\nPlease, check the syntax.\n",0); } for(my $i=0; $i<=$#tableau; $i++) { $correspondance->{$id}->[$i]->[0]=$tableau[$i]; $correspondance->{$id}->[$i]->[1]=$numhaplo; # $numhaplo sert pour les anova 2 facteurs emboités (2eme facteur) } } #my($clefs); #DEBUG #foreach my $clefs (keys %{$correspondance}) { #for (my $i=0; $i{$clefs}}); $i++) { # print STDERR "$clefs ", $correspondance->{$clefs}->[$i]->[1], "\n"; #} #} return($correspondance); } # return : # Hash of # "filename" => String # "anctype" => ANC::OutGroup|ANC::Rooted|ANC:Unrooted # ["outgroup" => String(leaf name)] # "trees" => # Array (size number of trees) of # Hash of # "index" => Int # "line" => Int # "file" => ref of first hash # "tab_longbranche" => # Array of (son, father, branch length) # # "tab_seq" => # Hash of # son => Array of (father, yes|no|maybe, .....1..0..1..) # # "tab_infoapo" => # Array of (father, son, apo number, CI, nb steps, direction of change) # "nb_br_non_nulle" => # Int # ["has_ambiguity"] => Int # ["ancestor" => String(sequence)] # "tree" => Tree sub ReadInputFile1 { my($input_file)=shift; my($phylo_program)=shift; my($datatype)=shift; my($ancetre)=shift; my($identifiant); my(%file)=("filename" => $input_file); if ($phylo_program == PhylProg::PAUP) { $identifiant="Tree number"; } elsif ($phylo_program == PhylProg::PHYLIP) { $identifiant="requires a total of"; } else { $identifiant = "TREE # "; } my $tab_arbres; if ($phylo_program == PhylProg::PAUP) { $tab_arbres=ReadPAUP(\%file); } elsif ($phylo_program == PhylProg::PHYLIP) { if ($datatype != DataType::SNP) { erreur("Datatype DNA not yet implemented\n", 0); } $tab_arbres=ReadPHYLIP(\%file); } else { $tab_arbres=ReadPAML(\%file); } $file{"trees"}=$tab_arbres; my $index=0; for my $arbre (@{$tab_arbres}) { $arbre->{"index"}=$index++; $arbre->{"file"}=\%file; $arbre->{"tree"}=readTreeOld($phylo_program, $arbre, $datatype, $ancetre); } $file{"nb_trees"}=$index; if ($index == 0) { erreur("No tree in file '$input_file'\nAborting.\n", 0); } return (\%file); } sub setAncType { my $file=shift; my $type=shift; my $value=shift; if (not exists($file->{"anctype"})) { $file->{"anctype"}=$type; if ($type == ANC::OutGroup) { $file->{"outgroup"}=$value; } return; } if ($type != $file->{"anctype"}) { erreur("I found a tree '".$ANC::Name[$type]. "' where as previous were '".$ANC::Name[$file->{"anctype"}]. "'.\nin file '".$file->{"filename"}."'", 0); } if ($type == ANC::OutGroup) { if (defined($file->{"outgroup"}) && defined($value) && $file->{"outgroup"} ne $value) { erreur("I found a tree whose outgroup is '".$value. "' where as previous were '".$file->{"outgroup"}. "'.\nin file '".$file->{"filename"}."'", 0); } elsif ((defined($file->{"outgroup"})) xor defined($value)) { erreur("I found a tree whose outgroup is '". (defined($value)?$value:"unknown"). "' where as previous were '". (defined($file->{"outgroup"})?$file->{"outgroup"}: "unknown"). "'.\nin file '".$file->{"filename"}."'", 0); } } } sub ReadPAUP { my $file=shift; my $filename=$file->{"filename"}; my($ligne); my @trees; open (INPUT, '<', $filename) or erreur("Unable to read file '$filename': $!\n", 0); TREE: { my(@tab_longbranche, @tab_infoapo); my($nb_br_non_nulle)=0; my(%tree); my $anctype; FIND_TREE: { while ($ligne=) { last FIND_TREE if ($ligne =~ /^Tree number /); } # Fin du fichier last TREE; } $tree{"line"}=$.; FIND_LONGBRANCHES: { my $dia="#"; while ($ligne=) { if ($ligne =~ /^Branch lengths and linkages for tree ${dia}[0-9]+ \(unrooted\)/) { setAncType($file, ANC::Unrooted); $anctype++; } last FIND_LONGBRANCHES if ($ligne =~ /^\s+Node\s+to node/); } next TREE; } READ_LONGBRANCHE: { my $pos = index($ligne, "to node"); while ($ligne=) { if ($ligne =~ /-------------------------/) { next; } if ($ligne =~ /^\s*Sum/) { last READ_LONGBRANCHE; } chomp($ligne); if ($ligne =~ /^\s*[0-9]+\s+root\s+0\s+0\s+0\s*$/) { # On ignore la ligne root qui ne contient aucune mutation next; } my $son = substr($ligne,0,$pos-1); # print STDERR "son1:$son\n"; my $other_infos = substr($ligne,$pos); $other_infos =~ s/^\s*//; # print STDERR "otherinfos:$other_infos\n"; if ($son =~ /^\s*([0-9]+)\s*$/) { $son = $1; } elsif ($son =~ /\s*([^\s](.*[^\s])?)\s+\([0-9]*\)(\*)?\s*$/) { $son = $1; if (defined($3)) { setAncType($file, ANC::OutGroup, $son); $anctype++; } } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(bad branch '$son' while reading branch". " lengths)\n", 0); } my @tableau = split(/\s+/, $other_infos); if ($#tableau != 3) { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(bad number of columns while reading branch". " lengths)\n", 0); } # We add (son, father, branch length) push @tab_longbranche, [$tableau[0], $son, $tableau[1]]; if ($tableau[2] != 0) { $nb_br_non_nulle++; } } next TREE; } FIND_APO: { while ($ligne=) { if ($ligne =~ /^\s+Branch\s+Character\s+Steps\s+CI\s+Change/) { last FIND_APO; } } next TREE; } READ_APO: { my $position = index($ligne, "Character"); my $son; my $father; while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*$/) { last READ_APO; } if ($ligne =~ /^\s*------------------/) { next; } my $name_haplo = substr($ligne,0,$position-1); if ($name_haplo =~ /^\s*$/) { if (not defined($son)) { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(no branch while reading". " apomorphies)\n", 0); } } elsif ($name_haplo =~ /^\s*(root|node_[0-9]+) --> (.*[^\s])\s*$/){ $father=$1; $son=$2; $father=~ s/^node_//; $son=~ s/^node_//; } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(bad branch while reading". " apomorphies)\n", 0); } my $infos = substr($ligne,$position); #print STDERR "infos:$infos\n"; my @tab_infos=split(/\s+/, $infos); if ($#tab_infos != 5) { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(bad number of columns while reading". " apomorphies)\n", 0); } my $sens_chgt = join(' ', $tab_infos[3], "-->", $tab_infos[5]); # (father, son, apo number, CI, nb steps, direction of change) push @tab_infoapo, [$father, $son, $tab_infos[0], $tab_infos[2], $tab_infos[1], ALTree::Sens->New($sens_chgt)]; } } $tree{"tab_longbranche"} = \@tab_longbranche; $tree{"tab_infoapo"} = \@tab_infoapo; $tree{"nb_br_non_nulle"} = $nb_br_non_nulle; if (not $anctype) { setAncType($file, ANC::Rooted); } push @trees, \%tree; redo TREE; } continue { erreur("Unexpected end of file while reading a tree\n". "in file '$filename' at line $.\n", 0); } close(INPUT); #print STDERR Dumper(@trees); return \@trees; } sub ReadPHYLIP { my $file=shift; my $filename=$file->{"filename"}; my($ligne); my @trees; open (INPUT, '<', $filename) or erreur("Unable to read file '$filename': $!\n", 0); TREE: { my(@tab_longbranche); my(%tab_seq); my(%tree); FIND_TREE: { FIND_ANCESTOR: { while ($ligne=) { last FIND_TREE if ($ligne =~ /^From\s+To\s+Any\s+Steps/); last FIND_ANCESTOR if ($ligne =~ /^best guesses of ancestral states:/); } # Fin du fichier last TREE; } my $ancestor=""; READ_ANCESTOR: { while ($ligne=) { chomp($ligne); if ($ligne =~ /.*0\!\s+([01?\s]+)$/) { my @tab=split(/\s+/, $1); $ancestor.=join('', @tab); } elsif ($ligne =~ /^[\s]*$/) { last READ_ANCESTOR; } elsif ($ligne =~ /^[0-9\s]*$/) { } elsif ($ligne =~ /^\s*\*-+\s*$/) { } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(while reading ancestor)\n", 0); } } next TREE; } $tree{"ancestor"}=$ancestor; setAncType($file, ANC::OutGroup, undef); #print STDERR "ancestor=$ancestor\n"; while ($ligne=) { last FIND_TREE if ($ligne =~ /^From\s+To\s+Any\s+Steps/); } next TREE; } $tree{"line"}=$.; READ_LONGBRANCHE: { while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*root\s+[0-9]+\s+no\s+[. ]+\s*$/) { # On ignore la ligne root qui ne contient aucune mutation next; } elsif ($ligne =~ /^\s*([0-9a-zA-Z_]+)\s+([0-9a-zA-Z_]+)\s+(yes|no|maybe)\s+([01.? ]+)\s*$/) { #print STDERR "trouvé! $ligne\n"; my($father)=$1; my($son)=$2; my($step2)=$3; my $seq=join('', split(/\s+/, $4)); my $step=$seq; $step =~ s/\.//g; $step=length($step); push @tab_longbranche, [$father, $son, $step]; if (defined($tab_seq{$son})) { erreur("It is the second time I read an information". "for the branch leading to '$son':\n$ligne\n". "in file '$filename' at line $.\n". "Please, check your data.\n", 0); } $tab_seq{$son}=[$father, $step2, $seq]; } else { if (scalar(@tab_longbranche)==0) { next; } elsif ($ligne =~ /^\s*$/) { last READ_LONGBRANCHE; } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n". "(while reading branches)\n", 0); } } } if (scalar(@tab_longbranche)==0) { next TREE; } } $tree{"tab_longbranche"} = \@tab_longbranche; $tree{"tab_seq"} = \%tab_seq; if (not exists($tree{"ancestor"})) { setAncType($file, ANC::Rooted); } push @trees, \%tree; redo TREE; } continue { erreur("Unexpected end of file while reading a tree\n". "in file '$filename' at line $.\n", 0); } close(INPUT); #print STDERR Dumper(@trees); return \@trees; } sub ReadPAML { my $file=shift; my $filename=$file->{"filename"}; my($ligne); my @trees; open (INPUT, '<', $filename) or erreur("Unable to open read '$filename': $!\n", 0); TREE: { my(@tab_longbranche, @tab_infoapo); my($nb_br_non_nulle)=0; my(%tree); FIND_TREE: { while ($ligne=) { last FIND_TREE if ($ligne =~ /^\s*Summary of changes along branches/); } # Fin du fichier last TREE; } $tree{"line"}=$.; READ_LONGBRANCHE: { READ_BRANCH: while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*List of extant and reconstructed sequences/) { last READ_LONGBRANCHE; } if ($ligne =~ /^\s*$/) { next; } if ($ligne =~ /^Check root for directions of change./) { next; } if (($ligne =~ /\s*Branch [0-9]+:\s+([0-9]+)\.\.([0-9]+)\s*$/) || ($ligne =~ /\s*Branch [0-9]+:\s+([0-9]+)\.\.[0-9]+\s+[(](.*)[)]\s*$/)) { my $father=$1; my $son=$2; my $br_len=0; READ_APO: { while ($ligne=) { if ($ligne =~ /^\s*$/) { next; } if ($ligne =~ /\s*([0-9]+)\s+([0-9A-Za-z?_-])\s+[0-9.]+\s*->\s*([0-9A-Za-z?_-])\s*([0-9\.]*)?\s*/) { # A VERIFIER: NORMALEMENT NE DOIT SE PRODUIRE QU'EN BOUT DE BRANCHES! if ($3 eq "?") { next; } #father #son # apomorphie number # CI # nb steps =1 for SNPs # direction of the change $br_len++; push @tab_infoapo, [$father, $son, $1, undef, 1, ALTree::Sens ->New($2."->".$3)]; } else { last READ_APO; } } next TREE; } # We add (son, father, branch length) push @tab_longbranche, [$father, $son, $br_len]; if ($br_len != 0) { $nb_br_non_nulle++; } # On boucle : on a déjà trouvé une autre ligne redo READ_BRANCH; } else { erreur("Sorry, I am unable to understand:\n$ligne\n". "in file '$filename' at line $.\n", 0); } } next TREE; } $tree{"tab_longbranche"} = \@tab_longbranche; $tree{"tab_infoapo"} = \@tab_infoapo; $tree{"nb_br_non_nulle"} = $nb_br_non_nulle; setAncType($file, ANC::Unrooted); push @trees, \%tree; redo TREE; } continue { erreur("Unexpected end of file while reading a tree\n". "in file '$filename' at line $.\n", 0); } close(INPUT); #print STDERR Dumper(@trees); return \@trees; } sub PrepareTree { my $phylo_program=shift; my $input_file=shift; my $datatype=shift; my $ancetre=shift; my $number_arbre=shift; return $input_file->{"trees"}->[$number_arbre]; } #use Data::Dumper; sub readTreeOld { my $phylo_program=shift; my $tab_arbre=shift; my $datatype=shift; my $ancetre=shift; my $tree; my $tab_longbranche=$tab_arbre->{"tab_longbranche"}; $tree=TreeBuilding($tab_longbranche); #print STDERR Dumper($tab_arbre); #print STDERR Dumper($tree); if ($phylo_program == PhylProg::PHYLIP) { my $racine=$tree->GetRoot(); my $ancetre_seq; if (not defined($tab_arbre->{"ancestor"})) { if ($ancetre) { $ancetre_seq=$ancetre; } else { erreur ("You have forgotten the option --anc-seq!\n", 0); } } else { $ancetre_seq=$tab_arbre->{"ancestor"}; if ($ancetre && $ancetre ne $ancetre_seq) { print STDERR "ancestor defined twice, the sequence entered". " with the -anc-seq option will be ignored for the". " tree number ".($tab_arbre->{"index"}+1)."\n"; } } BuildInfoApoPhylip($tab_arbre, $ancetre_seq, $racine); }elsif ($phylo_program == PhylProg::PAUP || $phylo_program == PhylProg::PAML) { } else { ALTree::Utils::internal_error("Phylogeny program not supported"); } my $tab_infoapo=$tab_arbre->{"tab_infoapo"}; FillTreeApoInfo($tree, $tab_infoapo); if (not defined($tab_arbre->{"has_ambiguity"})) { # CheckApoBrlen($tree); Pb avec phylip.. my $nb_br_non_nulle=$tab_arbre->{"nb_br_non_nulle"}; $tree->SetNbBrNonNulle($nb_br_non_nulle); CheckApoBrlen($tree); } return $tree; } ########################################### ######### BUILDING OF THE TREE ########## ########################################### # Build the tree and add the branch length info sub TreeBuilding{ my($tab_longbranche)=shift; my($i); my($tree)=ALTree::Tree->New(); #print "TreeBuilding\n"; for ($i=0;$i<=$#$tab_longbranche;$i++) { my($pere_id, $fils_id, $long_br); # variables intermédiaires pour # lisibilite du prog $pere_id=$tab_longbranche->[$i]->[0]; $fils_id=$tab_longbranche->[$i]->[1]; $long_br=$tab_longbranche->[$i]->[2]; my $pere; my $fils; if (not $tree->HasNodeIndex($fils_id)) { $fils=ALTree::Node->New($fils_id); #creation de la structure Node $tree->AddNode($fils); # puis, on la met dans tree } else { $fils=$tree->GetNode($fils_id); } if (not $tree->HasNodeIndex($pere_id)) { $pere=ALTree::Node->New($pere_id); #creation de la structure Node $tree->AddNode($pere); # puis, on la met dans tree } else { $pere=$tree->GetNode($pere_id); } $pere->AddChild($fils); # print "arbre{pere}->{children}->[0]->{id} ", $arbre->{$pere}->{"children"}->[0]->{"id"}, "\n"; if ($fils->HasFather()) { die ($fils->Name()." already have a father: ".$fils->GetFather()->Name(). " and I would like ".$pere->Name()." as father\n"); } else { $fils->SetFather($pere); } if ($fils->HasBrLen()) { die($fils->Name()." already have a branch length: ".$fils->GetBrLen()."\n"); } else { $fils->SetBrLen($long_br); } } return($tree); } sub FillTreeApoInfo { my($tree)=shift; my($tab_infoapo)=shift; my($i); #print "FillTreeApoInfo\n"; for ($i=0;$i<=$#$tab_infoapo;$i++) { my($pere_id, $fils_id, $apo_num, $apo_CI, $apo_steps, $apo_sens) = @{$tab_infoapo->[$i]}; #print "branche pere($pere) -> fils($fils)\n"; if (not $tree->HasNodeIndex($pere_id) or not $tree->HasNodeIndex($fils_id)) { my $id; if (not $tree->HasNodeIndex($pere_id)) { $id=$pere_id; } else { $id=$fils_id; } erreur("For the apomorphy $apo_num ('$pere_id' -> '$fils_id'),". " the node name\n'$id' has not been found in the tree\n". "Please, check your data.", 0); } my $pere=$tree->GetNode($pere_id); #print $pere->Name(); my $fils=$tree->GetNode($fils_id); #print STDERR "fils = $fils_id, pere=$pere_id\n"; if ($fils->GetFather() != $pere) { erreur("I read the apomorphy $apo_num ('$pere_id' -> '$fils_id').\n". "However, the node '$fils_id' has '". $fils->GetFather()->Name()."' as father in the tree.\n". "Please, check your data.", 0); } my $site; if (not $tree->HasSiteIndex($apo_num)) { $site=ALTree::SitePerTree->New($apo_num); $tree->AddSite($site); # CI is not used any more #if (defined $apo_CI) { # For PAML trees, CI is not defined # $site->SetCI($apo_CI); #} } else { $site=$tree->GetSite($apo_num); } my($ref_site_sens)=$site->ProvideSens($apo_sens); $ref_site_sens->SetStep($apo_steps); # For PAML, $aposteps=1 $fils->AddApo($ref_site_sens); # lie arbre et hash_site_sens } } sub BuildInfoApoPhylip { my($tab_arbre)=shift; my($ancetre_seq)=shift; my($racine)=shift; my @tab_infoapo; my $nb_br_non_nulle=0; my $has_ambiguity=0; my($tab_seq)=$tab_arbre->{"tab_seq"}; my $set_seq; my $root=$racine->GetId(); $set_seq=sub { my $son=shift; my $branch=$tab_seq->{$son}; if (scalar(@{$branch})==4) { return; } my $father=$branch->[0]; my $fatherseq; if (not defined($tab_seq->{$father})) { if ($father ne $root) { erreur("The node '$son' seems to be a son of '". $father."'\nbut I cannot get info about this branch ". "in the tree number ".($tab_arbre->{"index"}+1). "\nthat begins at line ".$tab_arbre->{"line"}. " in file '".$tab_arbre->{"file"}->{"filename"}. "'\nPlease, check your data.\n", 0); } $fatherseq=$ancetre_seq; } else { if (scalar(@{$tab_seq->{$father}}) == 3) { $set_seq->($father); } $fatherseq=$tab_seq->{$father}->[3]; } my $childseq=$branch->[2]; my $longueur=length($childseq); if (length($fatherseq) != $longueur) { erreur("Reconstructed sequences have not the same length". " at node '".$father."'\n($fatherseq) and at node '". $son."' ($childseq)\n", 0); } my($br_len)=0; my($newchildseq)=""; for (my $i=0; $i<$longueur;$i++) { my($fathersite)= substr($fatherseq,$i,1); my($childsite)= substr($childseq, $i,1); if ($childsite eq ".") { $childsite=$fathersite; } elsif ($fathersite ne $childsite) { if ($fathersite eq '?' || $childsite eq '?') { $has_ambiguity++; } $br_len++; my($apo_num)=$i+1; my($apo_sens)=ALTree::Sens->New($fathersite."->".$childsite); push @tab_infoapo, [$father, $son, $apo_num, undef, # Pas de CI dans les données avec PHYLIP 1, # Pas de gestion des micro sat. $apo_sens]; } $newchildseq.=$childsite; } if ($br_len != 0) { $nb_br_non_nulle++; } push @{$branch}, $newchildseq; }; for my $son (keys %{$tab_seq}) { $set_seq->($son); } $tab_arbre->{"tab_infoapo"}=\@tab_infoapo; $tab_arbre->{"nb_br_non_nulle"}=$nb_br_non_nulle; if ($has_ambiguity) { $tab_arbre->{"has_ambiguity"}=$has_ambiguity; } #delete($tab_arbre->{"tab_seq"}); } sub CheckApoBrlen { my($tree)=shift; my($node); $tree->GetRoot()->SetBrLen(0); # to prevent "uninitialized value" foreach $node ($tree->GetNodesList()) { if ($node->GetBrLen() != $node->NbApoStep()) { # check if nb_apo correspond to br_len die "Error in the tree: branch length= ", $node->GetBrLen(), " but ", $node->NbApoStep(), " apomorphies are defined for node ", $node->Name(), "\n"; } } } 1; ALTree-v1.3.2/ALTree/Nanova.pm000066400000000000000000000045031412112337500157140ustar00rootroot00000000000000package ALTree::Nanova; use strict; BEGIN { use Exporter (); use vars qw($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS); # set the version for version checking #$VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision: 153 $ =~ /\d+/g); sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(); #(&func1 &func2 &func4); %EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(); } use vars @EXPORT_OK; use ALTree::Utils qw(erreur); use Data::Dumper; # This function transforms the tree structure into the matrix used by the library NAnova sub Tree2mat { my $present_node = shift; my @vect=(); # dernier chenin parcouru my @mat; my $height=$present_node->{"height"}; print STDERR "heigh=", $present_node->{"height"}, "\n"; for (my $i=0; $i<$height; $i++) { push(@vect, -1); } my $tree2mat; $tree2mat = sub { my $present_node = shift; if ($present_node->NbChildren()==0) { for (my $i=$present_node->{"level"}; $i<$height; $i++) { $vect[$i]++; } my @tab=@vect; push (@mat, \@tab); } else { for my $child ($present_node->GetChildrenList()) { $vect[$present_node->{"level"}]++; $tree2mat->($child); } } }; $tree2mat->($present_node); return \@mat; } # Fille the various tabular necessary for NAnaova sub FillTableaux { my $present_node = shift; my $values = shift; my $groups = shift; my $nb_term = shift; print "Node: ", $present_node->Name(), " ", Dumper($values); print "\n"; if ($present_node->NbChildren()==0) { print "list: ", Dumper($present_node->GetQuantiList()), "\n"; push @{$values}, @{$present_node->GetQuantiListValues()}; push @{$groups}, $present_node->NbQuanti(); $nb_term++; } else { for my $child ($present_node->GetChildrenList()) { FillTableaux($child, $values, $groups, $nb_term); } } } sub WriteMat { my $mat = shift; #print STDERR Dumper($mat); #return; for (my $i=0; $i<=$#$mat; $i++) { foreach my $elem (@{$mat->[$i]}) { print $elem, "\t"; } print "\n"; } } 1; ALTree-v1.3.2/ALTree/Node.pm000066400000000000000000000135151412112337500153620ustar00rootroot00000000000000package ALTree::Node; ################################################################ ################################################################ ####################### Node ########################## ################################################################ ################################################################ use base 'ALTree::Base'; # Structure Node # "id" -> String # "children" -> Array of (Node) # "father" -> Node # "apo" -> Hash of ('num_apo' => SiteSens) # "br_len" -> Integer # "case" -> Integer # "control" -> Integer # "level" -> Integer # "height" -> Integer # "sequence" -> string # used only with phylip # "oldfather" -> Node # après fusion des branches nulles (anciennes relations) # "oldchildren" -> Array of (Node) # après fusion des branches nulles (anciennes relations de parenté) # "label" -> string # nom noeuds apres fusion 3+(4) par exemple # "res_test" -> Array of (TestResults) #Creation d'une structure sub New { # [classe] id my $class=shift; my $self={}; my $id=shift; bless($self, $class); $self->_init("id" => $id, "apo" => {}, "children" => [], @_); $self->Debug("creating Node $id\n"); return $self; } sub GetId { my $self=shift; return $self->{"id"}; } sub SetFather { my $self=shift; my $father=shift; $self->{"father"}=$father; } sub GetFather { my $self=shift; return $self->{"father"}; } sub HasFather { my $self=shift; return defined($self->{"father"}); } sub Father { my $self=shift; my $newfather=shift; if (defined($newfather)) { $self->SetFather($newfather); } return $self->GetFather(); } sub RecordOrigFather { my $self=shift; my $father=shift; if ($self->HasFather()) { $self->{"orig_father"}=$self->GetFather(); } } sub GetOrigFather { my $self=shift; if (exists($self->{"orig_father"})) { return $self->{"orig_father"}; } else { return $self->GetFather(); } } sub SetCase { my $self=shift; my $value=shift; $self->{"case"}=$value; } sub GetCase { my $self=shift; return $self->{"case"}; } sub EraseCase { my $self=shift; delete($self->{"case"}); } sub SetControl { my $self=shift; my $value=shift; $self->{"control"}=$value; } sub GetControl { my $self=shift; return $self->{"control"}; } sub EraseControl { my $self=shift; delete($self->{"control"}); } sub EraseQuanti { my $self=shift; delete($self->{"quanti"}); } sub SetBrLen { my $self=shift; my $br_len=shift; $self->{"br_len"}=$br_len; } sub GetBrLen { my $self=shift; return $self->{"br_len"}; } sub HasBrLen { my $self=shift; return exists($self->{"br_len"}); } sub AddOldChild { my $self=shift; push @{$self->{"oldchildren"}}, @_; } sub GetOldChildrenList { my $self=shift; return @{$self->{"oldchildren"}}; } sub AddChild { my $self=shift; push @{$self->{"children"}}, @_; } sub GetChildrenList { my $self=shift; return @{$self->{"children"}}; } sub DeleteChild { my $self=shift; my $todelete=shift; my @newchidren=grep {$_ != $todelete} $self->GetChildrenList(); $self->{"children"}=\@newchidren; return; # my $children=$self->{"children"}; # my($i); # for ($i=0; $i<=$#$children; $i++) { # if ($children->[$i]==$todelete) { # splice(@{$children}, $i, 1); # return; # } # } } sub NbChildren { my $self=shift; return scalar(@{$self->{"children"}}); } sub GetChild { my $self=shift; my $index=shift; return $self->{"children"}->[$index]; } sub ForgetChildren { my $self=shift; $self->{"children"}=[]; } sub SetSequence { my($self)=shift; my($sequence)=shift; $self->{"sequence"}=$sequence; } sub GetSequence { my($self)=shift; return $self->{"sequence"}; } sub AddApo { my $self=shift; my $site_sens=shift; my $apo=$site_sens->GetSiteNb(); if (exists($self->{"apo"}->{$apo})) { die "Adding aleardy present apo $apo in ", $self->Name(),"\n"; } $self->Debug("Adding apo $apo in ", $self->Name(),"\n"); $self->{"apo"}->{$apo}=$site_sens; $site_sens->_AddNode($self); } sub NbApo { my $self=shift; return scalar (keys(%{$self->{"apo"}})); } sub GetApoIndexList { my $self=shift; return keys(%{$self->{"apo"}}); } sub GetApoList { my $self=shift; return values(%{$self->{"apo"}}); } sub GetApo { my $self=shift; my $apo=shift; return $self->{"apo"}->{$apo}; } sub DeleteAllApo { my $self=shift; foreach my $apo ($self->GetApoList()) { $apo->_DeleteNode($self); } $self->{"apo"}={}; } ##Modifie Claire sub NbApoStep { my $self=shift; my($compteur)=0; my($apo); foreach $apo ($self->GetApoList()) { $compteur+=$apo->GetStep(); } return $compteur; } sub Name { my $self=shift; if (defined ($self->{"label"})) { return $self->{"label"}; } else { return $self->GetId(); } } sub AddQuanti { my $self=shift; my $value=shift; my $num_haplo=shift; delete($self->{"moyenne"}); push @{$self->{"quanti"}}, [$value, $num_haplo]; } sub GetQuantiList { my $self=shift; return $self->{"quanti"}; } sub GetQuantiListValues { my $self=shift; my @t=map {$_->[0] } @{$self->{"quanti"}}; return \@t; } sub NbQuanti { my $self=shift; return scalar(@{$self->{"quanti"}}); } sub GetQuantiMean { my $self=shift; if (defined($self->{"moyenne"})) { return $self->{"moyenne"}; } my $tab = $self->GetQuantiListValues(); my $sum; my $i; for ($i=0; $i < scalar (@{$tab}) ; $i++) { $sum+=$tab->[$i]; } my $moy=$sum/($i); $self->{"moyenne"}=$moy; return $moy; } #Faire meme chose pour case, control et br_len (HasBrLen), level, high, sequence, label, oldfather #Faire oldchildren (GetOldChildren, SetOldChildren, ) 1; ALTree-v1.3.2/ALTree/Sens.pm000066400000000000000000000026571412112337500154120ustar00rootroot00000000000000package ALTree::Sens; ################################################################ ################################################################ ####################### Sens ########################## ################################################################ ################################################################ use base 'ALTree::Base'; #Creation d'une structure sub New { # [classe] sens my $class=shift; my $self={}; my $sens=shift; bless($self, $class); if ($sens !~ /^\s*([0-9a-zA-Z?]+)\s*[-=_]*[>]\s*([0-9a-zA-Z?]+)\s*$/) { die "Invalid sens : $sens\n"; } $self->_init("start" => $1, "end" => $2, "switch" => 0, @_); return $self; } #Creation d'une structure sub NewRev { # [classe] sens my $class=shift; my $self={}; my $sens=shift; bless($self, $class); $self->_init("start" => $sens->{"end"}, "end" => $sens->{"start"}, "switch" => 0, @_); return $self; } sub _makeLabel { my $self=shift; my $start=shift; my $end=shift; if ($self->{'switch'}) { return $end."-->".$start; } else { return $start."-->".$end; } } sub GetLabel { my $self=shift; return $self->_makeLabel($self->{"start"}, $self->{"end"}); } sub GetLabelRev { my $self=shift; return $self->_makeLabel($self->{"end"}, $self->{"start"}); } sub Switch { my $self=shift; $self->{'switch'} = 1-$self->{'switch'}; } 1; ALTree-v1.3.2/ALTree/Site.pm000066400000000000000000000035471412112337500154050ustar00rootroot00000000000000package ALTree::Site; ################################################################ ################################################################ ####################### Site ########################## ################################################################ ################################################################ use base 'ALTree::Base'; use ALTree::Sens; # Structure Site # "site_nb" -> Integer # "sens_struct" -> Hash of ('sens_label' -> SiteSens) sub InitSite { # [obj] $site my $self=shift; my $site_nb=shift; $self->_init("site_nb" => $site_nb, "sens_struct" => {}); $self->Debug("creating Site $site_nb\n"); } sub GetSiteNb { my $self=shift; return $self->{"site_nb"}; } sub HasSensIndex { my $self=shift; my $sens=shift; return exists($self->{"sens_struct"}->{$sens->GetLabel()}); } sub AddSens { my $self=shift; my $sens=shift; my($ref_site_sens)=$self->NewSens($sens); $self->{"sens_struct"}->{$sens->GetLabel()}=$ref_site_sens; my $sensRev=ALTree::Sens->NewRev($sens); my($ref_site_sens_rev)=$self->NewSens($sensRev); $self->{"sens_struct"}->{$sensRev->GetLabel()}=$ref_site_sens_rev; ALTree::SiteSens::LinkRev($ref_site_sens, $ref_site_sens_rev); } sub GetSens { my $self=shift; my $sens=shift; return $self->{"sens_struct"}->{$sens->GetLabel()}; } sub ProvideSens { my $self=shift; my $sens=shift; if (not $self->HasSensIndex($sens)) { $self->AddSens($sens); } # creation du hash ref_site_sens et d'une ref dessus return $self->GetSens($sens); } sub GetSensIndexList { my $self=shift; return keys(%{$self->{"sens_struct"}}); } sub GetSensList { my $self=shift; return values(%{$self->{"sens_struct"}}); } sub NewSens { my $self=shift; my $sens=shift; die "This method needs to be overwriten\n"; } 1; ALTree-v1.3.2/ALTree/SiteCollection.pm000066400000000000000000000020241412112337500174060ustar00rootroot00000000000000package ALTree::SiteCollection; ################################################################ ################################################################ ####################### SiteCollection ######################## ################################################################ ################################################################ use base 'ALTree::Base'; sub InitSiteCollection { my $self=shift; $self->_init("sites" => {}); } sub AddSite { my $self=shift; my $site=shift; my $site_nb; $site_nb=$site->GetSiteNb(); $self->{"sites"}->{$site_nb}=$site; } sub GetSite { my $self=shift; my $site_nb=shift; #my $site=$self->{"sites"}->{$site_nb}; #if (not defined($site)) { #die "The site number $site_nb does not exist"; #} return $self->{"sites"}->{$site_nb}; } sub HasSiteIndex { my $self=shift; my $site_nb=shift; return exists($self->{"sites"}->{$site_nb}); } sub GetSitesList { my $self=shift; return values(%{$self->{"sites"}}); } 1; ALTree-v1.3.2/ALTree/SitePerForet.pm000066400000000000000000000067611412112337500170550ustar00rootroot00000000000000package ALTree::SitePerForet; ################################################################ ################################################################ ####################### SitePerForet ########################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::Site); sub New { # [classe] site_nb my $class=shift; my $self={}; my $site_nb=shift; bless($self, $class); $self->InitSite($site_nb); $self->_init("nb_mut" => 0, @_); return $self; } sub NewSens { my $self=shift; my $sens=shift; return ALTree::SiteSensPerForet->New($sens, $self); } sub mysort { my $func=shift; my @tab=@_; my @tab2=(); if (scalar(@tab) == 0) { return @tab2; } # print "Site ", $tab[0]->GetSiteNb(), "\n"; # foreach my $sens (@tab) { # print $sens->GetVi()," ", $sens->GetSensLabel(), "\n"; # } my $size; while (($size=scalar(@tab)) > 1) { my $min=0; for(my $i=1; $i<$size; $i++) { if ($func->($tab[$i], $tab[$min]) < 0) { $min=$i; } } push @tab2, $tab[$min]; # print "min=$min adding ",$tab[$min]->GetSensLabel(),"\n"; # print "Old tab\n"; # foreach my $sens (@tab) { # print $sens->GetVi()," ", $sens->GetSensLabel(), "\n"; # } #my @tab3=splice(@tab, $min, 1); my @tab3; for (my $i=0; $i<=$#tab; $i++) { if ($i != $min) { push @tab3, $tab[$i]; } } # print "NewTab\n"; # foreach my $sens (@tab3) { # print $sens->GetVi()," ", $sens->GetSensLabel(), "\n"; # } @tab=@tab3; } push @tab2, $tab[0]; # print "Site ", $tab[0]->GetSiteNb(), " result\n"; # foreach my $sens (@tab2) { # print $sens->GetVi()," ", $sens->GetSensLabel(), "\n"; # } return @tab2; } sub functrie { my $a=shift; my $b=shift; #print "a=$a, b=$b\n"; #if (not defined($a)) { #return 0; #print "a=$a b=$b\n"; #die "beauk\n"; #} # my $value=($b->GetVi() <=> $a->GetVi()); # print "Comparing ", $b->GetVi(), " and ", $a->GetVi(), " = $value\n"; # return $value;# return ($b->GetVi() <=> $a->GetVi()); } sub _EnsureViMax { my($self)=shift; if (not exists ($self->{"V_i_max"})) { my @toto=$self->GetSensList(); #print "site: ", $self->GetSiteNb(), "\n"; #for my $ref (@toto) { #print "Ref: $ref\n"; #} my @tab_trie=mysort \&functrie, @toto; #for my $ref (@toto) { #print "Ref: $ref\n"; #} #my @tab3; #for (my $i=0; $i<=$#toto; $i++) { # print "value $i = $toto[$i]\n"; # push @tab3, $toto[$i]; #} #my @tab_trie=sort { # $b->GetVi() <=> $a->GetVi(); #} @tab3; my($Vimax)=$self->{"V_i_max"}=$tab_trie[0]->GetVi(); for (my $i=1; $i<=$#tab_trie; $i++) { if ($tab_trie[$i]->GetVi() != $Vimax) { splice(@tab_trie, $i); # Elimine tout à partir de indice $i last; } } #print "Vi max : ", $Vimax, "\n"; $self->{"V_i_max_tab"}=\@tab_trie; } } sub GetViMax { my $self=shift; $self->_EnsureViMax(); return $self->{"V_i_max"}; } sub GetViMaxSens { my($self)=shift; my($index)=shift; $self->_EnsureViMax(); return $self->{"V_i_max_tab"}->[$index]; } #NbViMaxSens() => nombre sitesensperforet sub NbViMaxSens { my($self)=shift; $self->_EnsureViMax(); return (scalar @{$self->{"V_i_max_tab"}}); } #GetViMaxSensList() => array de tous les sitessensperforet (avec Vi==ViMax) sub GetViMaxSensList { my($self)=shift; $self->_EnsureViMax(); return @{$self->{"V_i_max_tab"}}; # Comment ça marche ce truc? } 1; ALTree-v1.3.2/ALTree/SitePerTree.pm000066400000000000000000000015541412112337500166700ustar00rootroot00000000000000package ALTree::SitePerTree; ################################################################ ################################################################ ####################### SitePerTree ########################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::Site); use ALTree::SiteSensPerTree; # Structure SitePerTree # "site_nb" -> Integer # "sens_struct" -> Hash of ('sens_label' -> SiteSens) # "nb_mut" -> Integer sub New { # [classe] site_nb my $class=shift; my $self={}; my $site_nb=shift; bless($self, $class); $self->InitSite($site_nb); $self->_init("nb_mut" => 0, @_); return $self; } sub NewSens { my $self=shift; my $sens=shift; return ALTree::SiteSensPerTree->New($sens, $self); } 1; ALTree-v1.3.2/ALTree/SiteSens.pm000066400000000000000000000024071412112337500162300ustar00rootroot00000000000000package ALTree::SiteSens; ################################################################ ################################################################ ####################### SiteSens ######################## ################################################################ ################################################################ use base 'ALTree::Base'; # Structure SiteSens # "site_struct" -> Site # "sens" -> Sens # "rev" -> SiteSens sub InitSiteSens { # [Obj] Sens_label SiteSens my $self=shift; my $sens=shift; my $site=shift; $self->_init("sens" => $sens, "site_struct" => $site, @_); $self->Debug("creating SiteSens $sens\n"); } sub GetSensLabel { my $self=shift; return $self->{"sens"}->GetLabel(); } sub GetSensStruct { my $self=shift; return $self->{"sens"}; } sub GetSite { my $self=shift; return $self->{"site_struct"}; } sub GetSiteNb { my $self=shift; return $self->GetSite()->GetSiteNb(); } sub LinkRev { my $siteSens=shift; my $siteSensRev=shift; $siteSens->{'rev'}=$siteSensRev; $siteSensRev->{'rev'}=$siteSens; } sub GetSensRev { my $self=shift; if (not defined($self->{'rev'})) { die "LinkRev not called\n"; } return $self->{'rev'}; } 1; ALTree-v1.3.2/ALTree/SiteSensPerForet.pm000066400000000000000000000016111412112337500176730ustar00rootroot00000000000000package ALTree::SiteSensPerForet; ################################################################ ################################################################ ####################### SiteSensPerForet ####################### ################################################################ ################################################################ use base qw(ALTree::Base ALTree::SiteSens); # Structure SiteSensPerForet # "site_struct" -> Site # "sens_label" -> String # "V_i" -> Float sub New { # [classe] sens_label site_struct my $class=shift; my $self={}; my $sens=shift; my $site=shift; bless($self, $class); $self->InitSiteSens($sens, $site); $self->_init("V_i" => 0, @_); return $self; } sub PlusVi { my $self=shift; my $value=shift; $self->{"V_i"} += $value; } sub GetVi { my $self=shift; return $self->{"V_i"}; } 1; ALTree-v1.3.2/ALTree/SiteSensPerTree.pm000066400000000000000000000053351412112337500175220ustar00rootroot00000000000000package ALTree::SiteSensPerTree; ################################################################ ################################################################ ####################### SiteSensPerTree ######################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::SiteSens); # Structure SiteSens # "site_struct" -> Site # "sens_label" -> String # "node_list" -> Array of (Node) # "m_it" -> Interger # nb mutation of this chage in the tree # "R_it" -> Interger # nb co-mutations of this change with character S # "V_it" -> Integer # (R_it-E_it)/sqrt(E_it) sub New { # [classe] sens_label site_struct my $class=shift; my $self={}; my $sens=shift; my $site=shift; bless($self, $class); $self->InitSiteSens($sens, $site); $self->_init("node_list" => [], "R_it" => 0, @_); return $self; } # Appelé par Node->AddApo sub _AddNode { my $self=shift; my $node=shift; if (exists($self->{"m_it"})) { die "_AddNode called after GetMit"; } push @{$self->{"node_list"}}, $node; } # Appelé par Node->DeleteAllApo sub _DeleteNode { my $self=shift; my $node=shift; my @new_node_list=grep { $_ != $node } @{$self->{"node_list"}}; if (scalar(@new_node_list)+1 != $self->NbNodes()) { die "Error while removing a node from a SiteSensPerTree"; } $self->{"node_list"}=\@new_node_list; } sub NbNodes { my $self=shift; return scalar (@{$self->{"node_list"}}); } sub GetNode { my $self=shift; my $index=shift; return $self->{"node_list"}->[$index]; } sub GetNodesList { my $self=shift; return @{$self->{"node_list"}}; } sub SetStep { my $self=shift; my $step=shift; $self->{"Step"}=$step; } sub GetStep { my $self=shift; my $step=shift; return $self->{"Step"}; } sub GetMit { my($self)=shift; if (not exists($self->{"m_it"})) { $self->{"m_it"}=$self->NbNodes(); } return ($self->{"m_it"}); } sub IncRit { my($self)=shift; if (exists($self->{"V_it"})) { die "IncRit called after GetVit"; } $self->{"R_it"}++; } sub GetRit { my($self)=shift; return ($self->{"R_it"}); } sub GetVit { my $self=shift; my $Rit=$self->GetRit(); my $Eit=$self->GetEit(); if (not exists($self->{"V_it"})) { if ($Eit == 0) { $self->{"V_it"}=0; } else { $self->{"V_it"}=($Rit-$Eit)/sqrt($Eit); } } return ($self->{"V_it"}); } sub SetEit { my($self)=shift; my($value)=shift; if (exists($self->{"V_it"})) { die "SetEit called after GetVit"; } $self->{"E_it"}=$value; } sub GetEit { my($self)=shift; return ($self->{"E_it"}); } 1; ALTree-v1.3.2/ALTree/Tree.pm000066400000000000000000000113041412112337500153660ustar00rootroot00000000000000package ALTree::Tree; ################################################################ ################################################################ ####################### Tree ######################## ################################################################ ################################################################ use base qw(ALTree::Base ALTree::SiteCollection); # "nodes" -> Hash of ('id' -> Node) # "sites" -> Hash of ('site_nb' -> SitePerTree) sub New { # [classe] my $class=shift; my $self={}; bless($self, $class); $self->InitSiteCollection(); $self->_init("nodes" => {}, @_); $self->Debug("creating Tree\n"); return $self; } sub AddNode { my $self=shift; my $node=shift; my $id=$node->GetId(); $self->{"nodes"}->{$id}=$node; } sub GetNode { my $self=shift; my $id=shift; if (defined ($self->{"nodes"}->{$id})) { return $self->{"nodes"}->{$id}; } else { return undef; } } sub HasNodeIndex { my $self=shift; my $id=shift; return exists($self->{"nodes"}->{$id}); } sub GetNodesIndexList { my $self=shift; return keys(%{$self->{"nodes"}}); } sub GetNodesList { my $self=shift; return values(%{$self->{"nodes"}}); } #sub _SetOutgroup { # my $self=shift; # my($outgroup)=shift; # $self->{"outgroup"}=$outgroup; #} sub GetOutgroup { my $self=shift; if (not exists($self->{"outgroup"})) { FIND: { foreach my $clef ($self->GetNodesIndexList()) { if ($clef eq "H000") { $self->{"outgroup"}=$self->GetNode($clef); last FIND; } } die "No outgroup corresponding to id=H000 identified in the tree\n"; } } return ($self->{"outgroup"}); } sub SetNbBrNonNulle { my $self=shift; my($value)=shift; $self->{"nb_br_non_nulle"}=$value; } sub GetNbBrNonNulle { my $self=shift; return ($self->{"nb_br_non_nulle"}); } sub _SetRoot { my $self=shift; my(@roots); #print STDERR "nodes: \n"; foreach my $node ($self->GetNodesList()) { if (not $node->HasFather()) { push @roots, $node; #print STDERR "root: ", $node->Name(), "\n"; } #else { print STDERR "node: ", $node->Name(), " father ", $node->GetFather()->Name(), "\n"; } } #Verification that there is only one root if (scalar(@roots) !=1) { die "error in the tree: ", scalar(@roots), " roots for the tree!\n"; } $self->{"root"}=$roots[0]; } sub GetRoot { my $self=shift; if (not exists($self->{"root"})) { $self->_SetRoot(); } return ($self->{"root"}); } sub ChangeRoot { my $self=shift; my $newroot=shift; if ($newroot == $self->GetRoot()) { return; } my $oldfather=$newroot->GetFather(); if (not defined($oldfather)) { die ("Non root node of the tree has no father\n" ."Do you use a node of the correct tree ?"); } $self->ChangeRoot($oldfather); # Some integrity tests... if ($oldfather->NbApo() != 0) { die "Root has apomorphies !"; } if ($oldfather->GetBrLen() != 0) { die "Root has non null BrLen !"; } foreach my $apo ($newroot->GetApoList()) { $oldfather->AddApo($apo->GetSensRev()); } $newroot->DeleteAllApo(); #print "Setting BRLen to ",$newroot->GetBrLen()," for ", $oldfather->Name()," from ", $newroot->Name(),"\n"; $oldfather->SetBrLen($newroot->GetBrLen()); $newroot->SetBrLen(0); $oldfather->SetFather($newroot); $newroot->SetFather(undef); $newroot->AddChild($oldfather); $oldfather->DeleteChild($newroot); $self->{"root"}=$newroot; } # Niveau 0 : noeud le plus profond sans frère ni oncle avec plusieurs fils sub FillLevel { my $self=shift; my $set_level; $set_level=sub { my($present_node)=shift; my($level)=shift; my($child); my($childlevel)=$level; if ($level>0 || $present_node->NbChildren() > 1) { $childlevel++; } my($realchildlevel)=$childlevel; foreach $child (@{$present_node->{"children"}}) { $realchildlevel=$set_level->($child, $childlevel); } $level=$realchildlevel-1; $present_node->{"level"}=$level; if ($level == 0) { $self->{"level0node"}=$present_node; } return $level; }; $set_level->($self->GetRoot(), 0); } sub FillHeight { my $self=shift; my $set_height; $set_height=sub { my($present_node)=shift; my($height)=0; my($child); foreach $child (@{$present_node->{"children"}}) { my $min_height=$set_height->($child)+1; if ($min_height > $height) { $height=$min_height; } } $present_node->{"height"}=$height; }; $set_height->($self->GetRoot()); } sub GetLevel0 { my $self=shift; if (! exists($self->{"level0node"})) { $self->FillLevel(); } return $self->{"level0node"}; } 1; ALTree-v1.3.2/ALTree/Utils.pm000066400000000000000000000026731412112337500156000ustar00rootroot00000000000000package ALTree::Utils; use Pod::Usage; use strict; BEGIN { use Exporter (); use vars qw($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS); # set the version for version checking #$VERSION = 1.00; # if using RCS/CVS, this may be preferred #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker @ISA = qw(Exporter); @EXPORT = qw(); #(&func1 &func2 &func4); %EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ], # your exported package globals go here, # as well as any optionally exported functions @EXPORT_OK = qw(&erreur &internal_error); } use vars @EXPORT_OK; sub erreur { my $msg=shift; my $use_pod=shift; if (not defined($use_pod) or $use_pod) { pod2usage("Error: ".$msg); } else { print STDERR "Error: ".$msg; exit 1; } } sub internal_error { my $msg=shift; die("Internal error: $msg\n". "Please, report this bug (with all is needed to reproduce it) to:\n". "Claire.Bardel\@univ-lyon1.fr\n"); } 1; package DataType; use constant SNP => 0; use constant DNA => 1; package PhylProg; use constant PHYLIP => 0; use constant PAUP => 1; use constant PAML => 2; package ANC; use constant Rooted => 0; use constant Unrooted => 1; use constant OutGroup => 2; no strict; @Name=("rooted using an ancestral sequence", "unrooted", "rooted using an outgroup"); ALTree-v1.3.2/ALTree/to_rewrite.pm000066400000000000000000000221101412112337500166470ustar00rootroot00000000000000 package main; use strict; use diagnostics; use warnings; use ALTree::Chi2 (); use ALTree::Import; use ALTree::Utils qw(erreur); use ALTree::Input qw(PrepareTree); #use Newchi2treeUtils; use Math::TamuAnova; sub parcours_nosplit_chi2split { my($tabnodes_a_traiter)=shift; my($prolonge)=shift; my($splitmode)=shift; my($node_ecriture)=shift; my($sign_util)=shift; # vaut 1 si on a besoin de la significativité, 0 sinon my($node, $child, @tab_noeuds_suivants); my($val)=0; my($test, $p_val); my($test_results); $test_results->{"ddl"}=scalar(@{$tabnodes_a_traiter})-1; # Nb branches -1 # $test n'est valable que si $sign_util est à YES ($p_val, $test)=CalculChi2($tabnodes_a_traiter, $test_results->{"ddl"}, $test_results, $sign_util ); $test_results->{"node_teste"}=$node_ecriture; push (@{$node_ecriture->{"res_test"}}, $test_results); $test_results->{"level"}=scalar(@{$node_ecriture->{"res_test"}})-1; if ($sign_util== SignUtil::YES && $test==1 && $splitmode == SplitMode::CHI2SPLIT) { # sign et que on on est en chi2split foreach $node (@{$tabnodes_a_traiter}) { if (NbFils($node) != 0) { my @children=$node->GetChildrenList(); parcours_nosplit_chi2split(\@children, $prolonge, $splitmode, $node); } } } elsif ($sign_util== SignUtil::NO || $test==0 || $splitmode == SplitMode::NOSPLIT) { # ou alors on est en nosplit foreach $node (@{$tabnodes_a_traiter}) { if (NbFils($node) != 0) { $val=1; foreach $child ($node->GetChildrenList()) { push (@tab_noeuds_suivants, $child); } } else { if ($prolonge == 1) { push (@tab_noeuds_suivants, $node); } } } if ($val==1) { parcours_nosplit_chi2split(\@tab_noeuds_suivants, $prolonge, $splitmode, $node_ecriture, $sign_util); } else { return; } } } sub ParcoursQuanti { my($tabnodes_a_traiter)=shift; my($prolonge)=shift; my($splitmode)=shift; my($node_ecriture)=shift; my($sign_util)=shift; # vaut 1 si on a besoin de la significativité, 0 sinon my($node, $child, @tab_noeuds_suivants); my($val)=0; my($test, $res_anova); my($test_results); # $test_results->{"ddl"}=scalar(@{$tabnodes_a_traiter})-1; # Nb branches -1 my @valeurs; my @facteurs; my $i=0; #DEBUG print STDERR "TTTT ", scalar (@{$tabnodes_a_traiter}), "\n"; foreach $node (@{$tabnodes_a_traiter}) { $i++; foreach my $case (@{$node->{"quanti"}}) { push (@valeurs, $case->[0]); push (@facteurs, $i); } } my $nb_factors=$i; $test_results->{"nb_facteurs"}=$nb_factors; # DEBUG print STDERR "node "; # for (my $i=0; $i<=$#valeurs; $i++) { # print STDERR " $valeurs[$i]"; # print STDERR " ($facteurs[$i])"; # } # print STDERR "\n"; # if ($sign_util==SignUtil::YES) { ($res_anova, $test)=CalculAnovaOneWay($tabnodes_a_traiter, \@valeurs, \@facteurs, $test_results, $sign_util, $nb_factors ); # } elsif ($sign_util==SignUtil::NO) { # ($res_anova)=CalculAnovaOneWay($tabnodes_a_traiter, \@valeurs, \@facteurs, $test_results, $sign_util, $nb_factors); # } $test_results->{"node_teste"}=$node_ecriture; push (@{$node_ecriture->{"res_test"}}, $test_results); $test_results->{"level"}=scalar(@{$node_ecriture->{"res_test"}})-1; if ($sign_util== SignUtil::YES && $test==ALTree::Chi2::SIGNIFICATIF && $splitmode == SplitMode::CHI2SPLIT) { # sign et que on on est en chi2split foreach $node (@{$tabnodes_a_traiter}) { if (NbFils($node) != 0) { my @children=$node->GetChildrenList(); ParcoursQuanti(\@children, $prolonge, $splitmode, $node); } } } elsif ($sign_util== SignUtil::NO || $test==ALTree::Chi2::NON_SIGNIFICATIF || $splitmode == SplitMode::NOSPLIT) { # ou alors on est en nosplit foreach $node (@{$tabnodes_a_traiter}) { if (NbFils($node) != 0) { $val=1; foreach $child ($node->GetChildrenList()) { push (@tab_noeuds_suivants, $child); } } else { if ($prolonge == 1) { push (@tab_noeuds_suivants, $node); } } } if ($val==1) { ParcoursQuanti(\@tab_noeuds_suivants, $prolonge, $splitmode, $node_ecriture, $sign_util); } else { return; } } else { die("Arghhh"); } } sub CalculChi2 { my($tabnodes_a_traiter)=shift; my($ddl)=shift; my($test_results)=shift; my($sign_util)=shift; return ALTree::CUtils::CalculChi2($tabnodes_a_traiter, $ddl, $test_results, $sign_util); } sub CalculAnovaOneWay { my $tabnodes_a_traiter=shift; my $valeurs=shift; my $facteurs=shift; my $test_results =shift; my $sign_util=shift; my $nb_factors=shift; my $significatif=ALTree::Chi2::NON_SIGNIFICATIF; my $res_anova; if (scalar (@{$tabnodes_a_traiter}) < 2) { $test_results->{"texte"}= "Only one category"; if ($sign_util==SignUtil::YES) { $significatif=ALTree::Chi2::NON_SIGNIFICATIF; } } else { if (scalar (@{$valeurs}) != scalar (@{$facteurs})) { erreur("Error in the anova data: the number of values ", scalar @${valeurs}, " and the number of factors ", scalar @{$facteurs}, " should be the same\n"); } else { $res_anova=Math::TamuAnova::anova($valeurs, $facteurs, $nb_factors); #DEBUG print STDERR $nb_factors, " ", scalar(@{$valeurs}), "\n"; $test_results->{"F"}=$res_anova->{"F"}; $test_results->{"p_val"}= $res_anova->{"p"}; # $test_results->{"warning"}.=" ($p_value)"; if ($sign_util==SignUtil::YES) { $significatif = ALTree::Chi2::chi2_fisher_significatif($res_anova->{"p"}); } } } if ($sign_util==SignUtil::YES) { if ($significatif) { $test_results->{"sign"}=ALTree::Chi2::SIGNIFICATIF; #$test_results->{"texte"}.="significatif"; } else { $test_results->{"sign"}=ALTree::Chi2::NON_SIGNIFICATIF; # $test_results->{"texte"}.="non significatif"; } } return ($res_anova, $significatif); #DEBUG if (defined ($res_anova)) { #DEBUG print STDERR "RESANOVA ", $res_anova->{"F"}, " ", $res_anova->{"p"}, "\n"; } sub InfosAffichees { my($node)=shift; my($mode)=shift; my($chaine)=Name($node); my($lbl_test)=0; my $test; $chaine.=" (LEVEL: ".$node->{"level"}.")"; if ($mode==1 || $mode == 2) { # Affiche ou pas les case/control $chaine.=" case/control:".$node->{"case"}."/".$node->{"control"}; } if ($mode==3 || $mode == 4) { $chaine.= sprintf " mean:%.2f",$node->GetQuantiMean(); } if (1) { # affiche les apomorphies $chaine.="\n"; foreach my $apo ($node->GetApoList()) { $chaine.= (" Site: ".$apo->GetSiteNb." Sens: ".$apo->GetSensLabel()."\n"); } } $chaine.="\n"; if ($mode==1 || $mode == 2) { # affiche ou pas les ddl if (defined $node->{"res_test"}) { for $test (@{$node->{"res_test"}}) { $chaine.= sprintf "[%d] ddl=%d", $test->{"level"}, $test->{"ddl"}; if ($test->{"ddl"} > 0) { $chaine.= sprintf " chi2=%.2f p_value_chi2=%.3g", $test->{"chi2"}, $test->{"p_val"}; # TODO : ça arrive quand on a que des malades ou témoins # dans les clades... if (not defined($test->{"chi2"})) { print "chi2 for ", Name($node), "(", $test->{"ddl"}, ")", "\n"; } if (not defined($test->{"p_val"})) { print "p_val for ", Name($node), "(", $test->{"ddl"}, ")", "\n"; } if ($mode ==2) { if (defined($test->{"sign"})) { if ($test->{"sign"} == ALTree::Chi2::NON_SIGNIFICATIF) { $chaine .= " (non significatif)"; } elsif ($test->{"sign"} == ALTree::Chi2::SIGNIFICATIF) { $chaine .= " (significatif)"; } else { ALTree::Utils::internal_error("unknown value ". $test->{"sign"}); } } if (defined($test->{"texte"})) { $chaine .= "\n".$test->{"texte"}; } if (defined($test->{"warning"})) { $chaine .= "\n".$test->{"warning"}; } } } $chaine.="\n"; } } } elsif ($mode == 3 || $mode ==4) { if (defined $node->{"res_test"}) { for $test (@{$node->{"res_test"}}) { $chaine.= sprintf "[%d] nb_fact=%d", $test->{"level"}, $test->{"nb_facteurs"}; if ($test->{"nb_facteurs"} > 1) { $chaine.= sprintf " F=%.2f p_value=%.3g", $test->{"F"}, $test->{"p_val"}; # TODO : ça arrive quand on a que des malades ou témoins # dans les clades... if (not defined($test->{"F"})) { print "F for ", Name($node), "(", $test->{"nb_facteurs"}, ")", "\n"; } if (not defined($test->{"p_val"})) { print "p_val for ", Name($node), "(", $test->{"nb_facteurs"}, ")", "\n"; } if ($mode == 4) { if (defined($test->{"sign"})) { if ($test->{"sign"} == ALTree::Chi2::NON_SIGNIFICATIF) { $chaine .= " (non significatif)"; } elsif ($test->{"sign"} == ALTree::Chi2::SIGNIFICATIF) { $chaine .= " (significatif)"; } else { ALTree::Utils::internal_error("unknown value ". $test->{"sign"}); } } if (defined($test->{"texte"})) { $chaine .= "\n".$test->{"texte"}; } if (defined($test->{"warning"})) { $chaine .= "\n".$test->{"warning"}; } } } $chaine.="\n"; } } } return($chaine); } 1; ALTree-v1.3.2/CUtils/000077500000000000000000000000001412112337500142215ustar00rootroot00000000000000ALTree-v1.3.2/CUtils/CUtils.xs000066400000000000000000000231411412112337500160010ustar00rootroot00000000000000#include "EXTERN.h" #include "perl.h" #include "XSUB.h" #include "ppport.h" #include "fisher.h" #include "chisq.h" #include "double_permutation.h" #include "resampling.h" #include "stats.h" #include "rhyper.h" #include "const-c.inc" MODULE = ALTree::CUtils PACKAGE = ALTree::CUtils INCLUDE: const-xs.inc ############################################################ # fisher.h ############################################################ double bilateral(a, b, c, d) double a double b double c double d double right(a, b, c, d) double a double b double c double d double left(a, b, c, d) double a double b double c double d ############################################################ # chisq.h ############################################################ double pochisq(x, df) double x int df double critchi(p, df) double p int df ############################################################ # rhyper.h ############################################################ int RHyper(n1, n2, k) int n1 int n2 int k CODE: RETVAL=rhyper(n1, n2, k); OUTPUT: RETVAL ############################################################ # double_permutation.h ############################################################ HV * DoublePermutation(nb_sample, nb_chi2, data) int nb_sample int nb_chi2 AV * data INIT: matrice_t mat; replicat_t rep; ensemble_t ens; int i,j,n; datatype_t min; AV * ra; CODE: //fprintf(stderr, "\nSTART(%i, %i)\n", nb_sample, nb_chi2); if ((nb_sample <= 0) || (nb_chi2 <= 0) || (av_len(data) != nb_sample*nb_chi2-1)) { XSRETURN_UNDEF; } mat=alloc_matrice(nb_sample, nb_chi2); rep=alloc_replicat(nb_chi2); ens=alloc_ensemble(nb_sample); n=0; for (i=0; i 'ALTree::CUtils', VERSION_FROM => 'lib/ALTree/CUtils.pm', # finds $VERSION PREREQ_PM => {}, # e.g., Module::Name => 1.1 ($] >= 5.005 ? ## Add these new keywords supported since 5.005 (ABSTRACT_FROM => 'lib/ALTree/CUtils.pm', # retrieve abstract from module AUTHOR => 'Claire Bardel ') : ()), LIBS => ['-lm -lpthread -lgsl -lblas'], # e.g., '-lm' DEFINE => '', # e.g., '-DHAVE_SOMETHING' INC => '-ggdb3 -I. -Ic_sources', # e.g., '-I. -I/usr/include/other' # Un-comment this if you add C files to link with later: # OBJECT => '$(O_FILES)', # link all the C files too MYEXTLIB => 'c_sources/libaltree-cutils$(LIB_EXT)', ); if (eval {require ExtUtils::Constant; 1}) { # If you edit these definitions to change the constants used by this module, # you will need to use the generated const-c.inc and const-xs.inc # files to replace their "fallback" counterparts before distributing your # changes. my @names = (qw()); ExtUtils::Constant::WriteConstants( NAME => 'ALTree::CUtils', NAMES => \@names, DEFAULT_TYPE => 'IV', C_FILE => 'const-c.inc', XS_FILE => 'const-xs.inc', ); } else { use File::Copy; use File::Spec; foreach my $file ('const-c.inc', 'const-xs.inc') { my $fallback = File::Spec->catfile('fallback', $file); copy ($fallback, $file) or die "Can't copy $fallback to $file: $!"; } } sub MY::postamble { ' $(MYEXTLIB): c_sources/Makefile $(MAKE) -C c_sources $(PASSTHRU) '; } ALTree-v1.3.2/CUtils/c_sources/000077500000000000000000000000001412112337500162065ustar00rootroot00000000000000ALTree-v1.3.2/CUtils/c_sources/Makefile.PL000066400000000000000000000007551412112337500201670ustar00rootroot00000000000000 use ExtUtils::MakeMaker; $Verbose = 1; WriteMakefile( NAME => 'ALTree::CUtils', SKIP => [qw(all static static_lib dynamic dynamic_lib)], clean => {'FILES' => 'libaltree-cutils$(LIB_EXT)'}, INC => '-Wall -I. -Ic_sources', ); sub MY::top_targets { ' all :: static pure_all :: static static :: libaltree-cutils$(LIB_EXT) libaltree-cutils$(LIB_EXT): $(O_FILES) $(AR) cr libaltree-cutils$(LIB_EXT) $(O_FILES) $(RANLIB) libaltree-cutils$(LIB_EXT) '; } ALTree-v1.3.2/CUtils/c_sources/chisq.c000066400000000000000000000110331412112337500174570ustar00rootroot00000000000000/* Module: chisq.c Purpose: compute approximations to chisquare distribution probabilities Contents: pochisq(), critchi() Uses: poz() in z.c (Algorithm 209) Programmer: Gary Perlman Organization: Wang Institute, Tyngsboro, MA 01879 Tester: compile with -DCHISQTEST to include main program Copyright: none Tabstops: 4 */ /*LINTLIBRARY*/ #include #include "z.h" /*static char sccsfid[] = "@(#) chisq.c 5.2 (|stat) 12/08/86";*/ #define CHI_EPSILON 0.000001 /* accuracy of critchi approximation */ #define CHI_MAX 99999.0 /* maximum chi square value */ #define LOG_SQRT_PI 0.5723649429247000870717135 /* log (sqrt (pi)) */ #define I_SQRT_PI 0.5641895835477562869480795 /* 1 / sqrt (pi) */ #define BIGX 20.0 /* max value to represent exp (x) */ #define ex(x) (((x) < -BIGX) ? 0.0 : exp (x)) double pochisq (); double critchi (); #ifdef CHISQTEST double Prob[] = { .10, .05, .01, .005, .001, -1.0 }; main () { int df; int p; printf ("%-4s ", "df"); for (p = 0; Prob[p] > 0.0; p++) printf ("%8.3f ", Prob[p]); putchar ('\n'); for (df = 1; df < 30; df++) { printf ("%4d ", df); for (p = 0; Prob[p] > 0.0; p++) printf ("%8.3f ", critchi (Prob[p], df)); putchar ('\n'); } } #endif /* CHISQTEST */ #ifdef CHISQTEST2 #include #include double chi2 = .10; int main (int argc, char** argv) { int df; //int p; if (argc != 3) { printf("usage: %s chi2 df\n", argv[0]); exit(1); } chi2=atof(argv[1]); df=atoi(argv[2]); printf ("%lf\n", pochisq (chi2, df)); return 0; } #endif /* CHISQTEST */ /*FUNCTION pochisq: probability of chi sqaure value */ /*ALGORITHM Compute probability of chi square value. Adapted from: Hill, I. D. and Pike, M. C. Algorithm 299 Collected Algorithms for the CACM 1967 p. 243 Updated for rounding errors based on remark in ACM TOMS June 1985, page 185 */ double pochisq (x, df) double x; /* obtained chi-square value */ int df; /* degrees of freedom */ { double a, y, s; double e, c, z; double poz (); /* computes probability of normal z score */ int even; /* true if df is an even number */ if (x <= 0.0 || df < 1) return (1.0); a = 0.5 * x; even = (2*(df/2)) == df; if (df > 1) y = ex (-a); s = (even ? y : (2.0 * poz (-sqrt (x)))); if (df > 2) { x = 0.5 * (df - 1.0); z = (even ? 1.0 : 0.5); if (a > BIGX) { e = (even ? 0.0 : LOG_SQRT_PI); c = log (a); while (z <= x) { e = log (z) + e; s += ex (c*z-a-e); z += 1.0; } return (s); } else { e = (even ? 1.0 : (I_SQRT_PI / sqrt (a))); c = 0.0; while (z <= x) { e = e * (a / z); c = c + e; z += 1.0; } return (c * y + s); } } else return (s); } /*FUNCTION critchi: compute critical chi square value to produce given p */ double critchi (p, df) double p; int df; { double minchisq = 0.0; double maxchisq = CHI_MAX; double chisqval; if (p <= 0.0) return (maxchisq); else if (p >= 1.0) return (0.0); chisqval = df / sqrt (p); /* fair first value */ while (maxchisq - minchisq > CHI_EPSILON) { if (pochisq (chisqval, df) < p) maxchisq = chisqval; else minchisq = chisqval; chisqval = (maxchisq + minchisq) * 0.5; } return (chisqval); } ALTree-v1.3.2/CUtils/c_sources/chisq.h000066400000000000000000000001571412112337500174710ustar00rootroot00000000000000#ifndef _CHISQ_H #define _CHISQ_H double pochisq(double x, int df); double critchi(double p, int df); #endif ALTree-v1.3.2/CUtils/c_sources/datatype.h000066400000000000000000000002301412112337500201650ustar00rootroot00000000000000#ifndef _DATATYPE_H #define _DATATYPE_H //#define CONV "%Le" //typedef long double datatype_t; #define CONV "%lg" typedef double datatype_t; #endif ALTree-v1.3.2/CUtils/c_sources/debug.h000066400000000000000000000003651412112337500174510ustar00rootroot00000000000000#ifndef _DEBUG_H #define _DEBUG_H //#define DEBUG #ifdef DEBUG # include # define debug(str,...) fprintf(stderr, str "\n", ##__VA_ARGS__) #else # define debug(str,...) ((void)0) # define NDEBUG #endif #include #endif ALTree-v1.3.2/CUtils/c_sources/double_permutation.c000066400000000000000000000110501412112337500222500ustar00rootroot00000000000000 #include #include #include #include "double_permutation.h" #define CALC_PVAL(count, nb_sample) \ (((datatype_t)(count-1))/* On s'enlève soi-même*/ \ /(nb_sample)) int read_matrice(matrice_t mat, int nb_sample, int nb_chi2) { int i, j; datatype_t d; int res; for (i=0; i=val_ref) { count++; } } //printf( "count=%i\n", count); return count; } inline static int count_inferieur(ensemble_t ens, datatype_t val_ref, int nb_sample) { int i, count=0; for (i=0; i< nb_sample; i++) { if (ens[i]<=val_ref) { count++; } } //printf( "count=%i\n", count); return count; } inline static datatype_t pval_min(replicat_t rep, int nb_chi2) { int i; datatype_t ret=rep[0]; for (i=1; i #include typedef struct { double bilateral; double left; double right; } result_t; static double lngamm(double z) // Reference: "Lanczos, C. 'A precision approximation // of the gamma function', J. SIAM Numer. Anal., B, 1, 86-96, 1964." // Translation of Alan Miller's FORTRAN-implementation // See http://lib.stat.cmu.edu/apstat/245 { double x = 0; x += 0.1659470187408462e-06/(z+7); x += 0.9934937113930748e-05/(z+6); x -= 0.1385710331296526 /(z+5); x += 12.50734324009056 /(z+4); x -= 176.6150291498386 /(z+3); x += 771.3234287757674 /(z+2); x -= 1259.139216722289 /(z+1); x += 676.5203681218835 /(z); x += 0.9999999999995183; return(log(x)-5.58106146679532777-z+(z-0.5)*log(z+6.5)); } static double lnfact(double n) { if(n<=1) return(0); return(lngamm(n+1)); } static double lnbico(double n,double k) { return(lnfact(n)-lnfact(k)-lnfact(n-k)); } static double hyper_323(double n11,double n1_,double n_1,double n) { return(exp(lnbico(n1_,n11)+lnbico(n-n1_,n_1-n11)-lnbico(n,n_1))); } static double sn11,sn1_,sn_1,sn,sprob; static double hyper0(double n11i,double n1_i,double n_1i,double ni) { if(!(n1_i||n_1i||ni)) { if(!(((long long)n11i) % 10 == 0)) { if(n11i==sn11+1) { sprob *= ((sn1_-sn11)/(n11i))*((sn_1-sn11)/(n11i+sn-sn1_-sn_1)); sn11 = n11i; return sprob; } if(n11i==sn11-1) { sprob *= ((sn11)/(sn1_-n11i))*((sn11+sn-sn1_-sn_1)/(sn_1-n11i)); sn11 = n11i; return sprob; } } sn11 = n11i; } else { sn11 = n11i; sn1_=n1_i; sn_1=n_1i; sn=ni; } sprob = hyper_323(sn11,sn1_,sn_1,sn); return sprob; } static double hyper(double n11) { return(hyper0(n11,0,0,0)); } static double sleft,sright,sless,slarg; static double exact(double n11,double n1_,double n_1,double n) { double p,i,j,prob; double max=n1_; double min; if(n_11) twotail=1; */ /* "Left : p-value = "+ left + newline + */ /* "Right : p-value = "+ right + newline + */ /* "2-Tail : p-value = "+ twotail + */ /* newline + "------------------------------------------"; */ /* } */ static result_t fisher(double n11, double n12, double n21, double n22) { result_t res; double n1_; double n_1; double n; //double prob; if(n11<0) n11 *= -1; if(n12<0) n12 *= -1; if(n21<0) n21 *= -1; if(n22<0) n22 *= -1; n1_ = n11+n12; n_1 = n11+n21; n = n11 +n12 +n21 +n22; //prob= exact(n11,n1_,n_1,n); res.bilateral=sleft+sright; res.left=sless; res.right=slarg; if (res.bilateral>1) res.bilateral=1; return res; } double bilateral(double a, double b, double c, double d) { result_t res=fisher(a,b,c,d); //return 1; return res.bilateral; } double right(double a, double b, double c, double d) { result_t res=fisher(a,b,c,d); return res.right; } double left(double a, double b, double c, double d) { result_t res=fisher(a,b,c,d); return res.left; } ALTree-v1.3.2/CUtils/c_sources/fisher.h000066400000000000000000000003231412112337500176350ustar00rootroot00000000000000#ifndef _FISHER_H #define _FISHER_H double bilateral(double a, double b, double c, double d); double right(double a, double b, double c, double d); double left(double a, double b, double c, double d); #endif ALTree-v1.3.2/CUtils/c_sources/mt19937ar.c000066400000000000000000000167021412112337500177400ustar00rootroot00000000000000/* A C-program for MT19937, with initialization improved 2002/1/26. Coded by Takuji Nishimura and Makoto Matsumoto. Before using, initialize the state by using init_genrand(seed) or init_by_array(init_key, key_length). Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura, All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. The names of its contributors may not be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Any feedback is very welcome. http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/emt.html email: m-mat @ math.sci.hiroshima-u.ac.jp (remove space) */ #include #include "debug.h" #include "mt19937ar.h" /* Period parameters */ #define N MT19937AR_N /* 624 */ #define M 397 #define MATRIX_A 0x9908b0dfUL /* constant vector a */ #define UPPER_MASK 0x80000000UL /* most significant w-r bits */ #define LOWER_MASK 0x7fffffffUL /* least significant r bits */ static __thread mt19937ar_t local = { {0, }, /* the array for the state vector */ N+1, /* mti==N+1 means mt[N] is not initialized */ }; /* initializes mt[N] with a seed */ void init_genrand_mt(mt19937ar_t* p, unsigned long s) { int mti; unsigned long *mt=&p->mt[0]; debug("init init_genrand_mt(%li)", s); mt[0]= s & 0xffffffffUL; for (mti=1; mti> 30)) + mti); /* See Knuth TAOCP Vol2. 3rd Ed. P.106 for multiplier. */ /* In the previous versions, MSBs of the seed affect */ /* only MSBs of the array mt[]. */ /* 2002/01/09 modified by Makoto Matsumoto */ mt[mti] &= 0xffffffffUL; /* for >32 bit machines */ } p->mti=mti; } void init_genrand(unsigned long s) { init_genrand_mt(&local, s); } /* initialize by an array with array-length */ /* init_key is the array for initializing keys */ /* key_length is its length */ /* slight change for C++, 2004/2/26 */ void init_by_array_mt(mt19937ar_t* p, unsigned long init_key[], int key_length) { int i, j, k; unsigned long *mt=&p->mt[0]; debug("init init_by_array_mt"); init_genrand_mt(p, 19650218UL); i=1; j=0; k = (N>key_length ? N : key_length); for (; k; k--) { mt[i] = (mt[i] ^ ((mt[i-1] ^ (mt[i-1] >> 30)) * 1664525UL)) + init_key[j] + j; /* non linear */ mt[i] &= 0xffffffffUL; /* for WORDSIZE > 32 machines */ i++; j++; if (i>=N) { mt[0] = mt[N-1]; i=1; } if (j>=key_length) j=0; } for (k=N-1; k; k--) { mt[i] = (mt[i] ^ ((mt[i-1] ^ (mt[i-1] >> 30)) * 1566083941UL)) - i; /* non linear */ mt[i] &= 0xffffffffUL; /* for WORDSIZE > 32 machines */ i++; if (i>=N) { mt[0] = mt[N-1]; i=1; } } mt[0] = 0x80000000UL; /* MSB is 1; assuring non-zero initial array */ } void init_by_array(unsigned long init_key[], int key_length) { init_by_array_mt(&local, init_key, key_length); } /* generates a random number on [0,0xffffffff]-interval */ unsigned long genrand_int32_mt(mt19937ar_t* p) { unsigned long *mt=&p->mt[0]; unsigned long y; static const unsigned long mag01[2]={0x0UL, MATRIX_A}; /* mag01[x] = x * MATRIX_A for x=0,1 */ if (p->mti >= N) { /* generate N words at one time */ int kk; for (kk=0;kk> 1) ^ mag01[y & 0x1UL]; } for (;kk> 1) ^ mag01[y & 0x1UL]; } y = (mt[N-1]&UPPER_MASK)|(mt[0]&LOWER_MASK); mt[N-1] = mt[M-1] ^ (y >> 1) ^ mag01[y & 0x1UL]; p->mti = 0; } y = mt[p->mti++]; /* Tempering */ y ^= (y >> 11); y ^= (y << 7) & 0x9d2c5680UL; y ^= (y << 15) & 0xefc60000UL; y ^= (y >> 18); return y; } unsigned long genrand_int32(void) { if (local.mti == N+1) /* if init_genrand() has not been called, */ init_genrand(5489UL); /* a default initial seed is used */ return genrand_int32_mt(&local); } /* generates a random number on [0,0x7fffffff]-interval */ long genrand_int31(void) { return (long)(genrand_int32()>>1); } long genrand_int31_mt(mt19937ar_t* p) { return (long)(genrand_int32_mt(p)>>1); } /* generates a random number on [0,1]-real-interval */ double genrand_real1(void) { return genrand_int32()*(1.0/4294967295.0); /* divided by 2^32-1 */ } double genrand_real1_mt(mt19937ar_t* p) { return genrand_int32_mt(p)*(1.0/4294967295.0); /* divided by 2^32-1 */ } /* generates a random number on [0,1)-real-interval */ double genrand_real2(void) { return genrand_int32()*(1.0/4294967296.0); /* divided by 2^32 */ } double genrand_real2_mt(mt19937ar_t* p) { return genrand_int32_mt(p)*(1.0/4294967296.0); /* divided by 2^32 */ } /* generates a random number on (0,1)-real-interval */ double genrand_real3(void) { return (((double)genrand_int32()) + 0.5)*(1.0/4294967296.0); /* divided by 2^32 */ } double genrand_real3_mt(mt19937ar_t* p) { return (((double)genrand_int32_mt(p)) + 0.5)*(1.0/4294967296.0); /* divided by 2^32 */ } /* generates a random number on [0,1) with 53-bit resolution*/ double genrand_res53(void) { unsigned long a=genrand_int32()>>5, b=genrand_int32()>>6; return(a*67108864.0+b)*(1.0/9007199254740992.0); } double genrand_res53_mt(mt19937ar_t* p) { unsigned long a=genrand_int32_mt(p)>>5, b=genrand_int32_mt(p)>>6; return(a*67108864.0+b)*(1.0/9007199254740992.0); } /* These real versions are due to Isaku Wada, 2002/01/09 added */ #if 0 int main(void) { int i; unsigned long init[4]={0x123, 0x234, 0x345, 0x456}, length=4; init_by_array(init, length); printf("1000 outputs of genrand_int32()\n"); for (i=0; i<1000; i++) { printf("%10lu ", genrand_int32()); if (i%5==4) printf("\n"); } printf("\n1000 outputs of genrand_real2()\n"); for (i=0; i<1000; i++) { printf("%10.8f ", genrand_real2()); if (i%5==4) printf("\n"); } return 0; } #endif ALTree-v1.3.2/CUtils/c_sources/mt19937ar.h000066400000000000000000000067251412112337500177510ustar00rootroot00000000000000/* A C-program for MT19937, with initialization improved 2002/1/26. Coded by Takuji Nishimura and Makoto Matsumoto. Before using, initialize the state by using init_genrand(seed) or init_by_array(init_key, key_length). Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura, All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. The names of its contributors may not be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Any feedback is very welcome. http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/emt.html email: m-mat @ math.sci.hiroshima-u.ac.jp (remove space) */ #ifndef _MT19937AR_H #define _MT19937AR_H #ifdef __cplusplus extern "C" { #endif typedef struct { #define MT19937AR_N 624 unsigned long mt[MT19937AR_N]; /* the array for the state vector */ int mti; /* mti==N+1 means mt[N] is not initialized */ } mt19937ar_t; /* initializes mt[N] with a seed */ void init_genrand(unsigned long s); void init_genrand_mt(mt19937ar_t* priv, unsigned long s); /* initialize by an array with array-length */ /* init_key is the array for initializing keys */ /* key_length is its length */ /* slight change for C++, 2004/2/26 */ void init_by_array(unsigned long init_key[], int key_length); void init_by_array_mt(mt19937ar_t* priv, unsigned long init_key[], int key_length); /* generates a random number on [0,0xffffffff]-interval */ unsigned long genrand_int32(void); unsigned long genrand_int32_mt(mt19937ar_t* priv); /* generates a random number on [0,0x7fffffff]-interval */ long genrand_int31(void); long genrand_int31_mt(mt19937ar_t* priv); /* generates a random number on [0,1]-real-interval */ double genrand_real1(void); double genrand_real1_mt(mt19937ar_t* priv); /* generates a random number on [0,1)-real-interval */ double genrand_real2(void); double genrand_real2_mt(mt19937ar_t* priv); /* generates a random number on (0,1)-real-interval */ double genrand_real3(void); double genrand_real3_mt(mt19937ar_t* priv); /* generates a random number on [0,1) with 53-bit resolution*/ double genrand_res53(void); double genrand_res53_mt(mt19937ar_t* priv); #ifdef __cplusplus } #endif #endif ALTree-v1.3.2/CUtils/c_sources/myrand.c000066400000000000000000000013031412112337500176410ustar00rootroot00000000000000#include "myrand.h" #include #include #include #include "debug.h" #define MT #ifdef MT # include "mt19937ar.h" # define MYRAND_MAX (0xffffffffUL) #else # define MYRAND_MAX RAND_MAX #endif int myrand_init(unsigned long value) { #ifdef MT init_genrand(value); #endif return 0; } static void init() __attribute__((constructor)); static void init() { #ifdef MT myrand_init(getpid()); #else srand(getpid()); #endif debug("init rand done"); } int myrand(int up) { for(;;) { #ifdef MT unsigned long r=genrand_int32(); #else int r=rand(); #endif if (r<=MYRAND_MAX-up) { return r%up; } if (r #include #include #include #include #include "myrand.h" struct chi2s { int nb_leaves; struct cc*leaves; struct cc*th; int nb_nodes; int *stashed_nodes; int *next_nodes; struct cc*nodes; }; static void compute_chi2s(const struct tree *tree, const struct cc *lcc, struct chi2s *temp, int prolonge, datatype_t *results) { int first_leaf=0; int nb_next_nodes=0; int nb_stashed_nodes; assert(temp->nb_leaves==tree->nb_leaves); assert(temp->nb_nodes==tree->nb_nodes); bzero(temp->nodes, tree->nb_nodes*sizeof(struct cc)); bzero(temp->stashed_nodes, tree->nb_nodes*sizeof(int)); //debug("max_depth=%i, nb_leaves=%i, nb_nodes=%i", // tree->max_depth, tree->nb_leaves, tree->nb_nodes); int depth; for (depth=tree->max_depth; depth>0; depth--){ int nb_leaves=0; int next_first_leaf; int i; nb_stashed_nodes=0; for(i=0; inext_nodes[i]; temp->leaves[nb_leaves++]=temp->nodes[id]; int parent=tree->np[id]; if (parent != -1) { if (!temp->stashed_nodes[parent]) { temp->stashed_nodes[parent]=1; temp->next_nodes[nb_stashed_nodes++]=parent; } temp->nodes[parent].cases+=temp->nodes[id].cases; temp->nodes[parent].controls+=temp->nodes[id].controls; } } for(i=first_leaf; inb_leaves && tree->ld[i] == depth; i++) { temp->leaves[nb_leaves++]=lcc[i]; int parent=tree->lp[i]; if (parent != -1) { if (!temp->stashed_nodes[parent]) { temp->stashed_nodes[parent]=1; temp->next_nodes[nb_stashed_nodes++]=parent; } temp->nodes[parent].cases+=lcc[i].cases; temp->nodes[parent].controls+=lcc[i].controls; } } assert(nb_stashed_nodes <= tree->nb_leaves); next_first_leaf=i; if (prolonge == 1) { for(; inb_leaves; i++) { temp->leaves[nb_leaves++]=lcc[i]; } } nb_next_nodes=nb_stashed_nodes; first_leaf=next_first_leaf; //debug("depth=%i, ddl=%i", depth, nb_leaves-1); struct calcul_chi2_res r=calcul_chi2(nb_leaves, temp->leaves, 0, 0, temp->th); assert(r.error==0); results[depth-1]=r.chi2; } } struct paractl { volatile int permutation; int nb_permutations; const struct tree *tree; const struct cc *lcc; int cases; int controls; int prolonge; datatype_t *results; }; struct parainfo { struct paractl *ctl; int permutation; }; struct memory { struct cc *rand_lcc; struct chi2s temp; }; static struct memory *mem_alloc(const struct tree *tree) { struct memory *m=malloc(sizeof(struct memory)); m->rand_lcc=malloc(tree->nb_leaves*sizeof(struct cc)); m->temp=(struct chi2s){ .nb_leaves=tree->nb_leaves, .leaves=malloc(tree->nb_leaves*sizeof(struct cc)), .th=malloc(tree->nb_leaves*sizeof(struct cc)), .nb_nodes=tree->nb_nodes, .stashed_nodes=malloc(tree->nb_nodes*sizeof(int)), .next_nodes=malloc(tree->nb_nodes*sizeof(int)), .nodes=malloc(tree->nb_nodes*sizeof(struct cc)), }; return m; } static void free_alloc(struct memory *m) { free(m->temp.leaves); free(m->temp.th); free(m->temp.stashed_nodes); free(m->temp.next_nodes); free(m->temp.nodes); free(m->rand_lcc); } static void *resampling_worker(void* param) { struct parainfo *p=(struct parainfo *)param; /* Copy values for ro access, to avoid ping-pong with cache lines when updating permutation */ struct paractl data= *(p->ctl); int permutation=p->permutation; struct memory *mem=mem_alloc(data.tree); myrand_init(pthread_self()+getpid()); while (permutation < data.nb_permutations) { //debug("thread %i handle perm %i", p->permutation, permutation); random_clades(data.tree->nb_leaves, data.lcc, data.cases, data.controls, mem->rand_lcc); compute_chi2s(data.tree, mem->rand_lcc, &mem->temp, data.prolonge, data.results+(permutation * data.tree->max_depth)); permutation=__sync_fetch_and_add(&p->ctl->permutation, 1); } free_alloc(mem); return NULL; } /* From http://stackoverflow.com/questions/150355/programmatically-find-the-number-of-cores-on-a-machine */ static int nbproc() { int numCPU=0; #ifdef __linux numCPU = sysconf( _SC_NPROCESSORS_ONLN ); #elif defined(__bsd) int mib[4]; size_t len = sizeof(numCPU); /* set the mib for hw.ncpu */ mib[0] = CTL_HW; mib[1] = HW_AVAILCPU; // alternatively, try HW_NCPU; /* get the number of CPUs from the system */ sysctl(mib, 2, &numCPU, &len, NULL, 0); if( numCPU < 1 ) { mib[1] = HW_NCPU; sysctl( mib, 2, &numCPU, &len, NULL, 0 ); if( numCPU < 1 ) { numCPU = 1; } } #else # warning no support on this plate-form. Patch welcome. #endif return numCPU; } int resampling_chi2(const struct tree *tree, const struct cc *lcc, int prolonge, int nb_permutations, datatype_t *results, int parallel) { #if defined(DEBUG) && 0 FILE* dump=fopen("/tmp/dump", "w+"); fwrite(tree, sizeof(struct tree), 1, dump); fwrite(tree->ld, sizeof(int), tree->nb_leaves, dump); fwrite(tree->lp, sizeof(int), tree->nb_leaves, dump); fwrite(tree->np, sizeof(int), tree->nb_nodes, dump); fwrite(lcc, sizeof(struct cc), tree->nb_leaves, dump); fwrite(&prolonge, sizeof(int), 1, dump); fwrite(&nb_permutations, sizeof(int), 1, dump); fclose(dump); #endif char* envvar=getenv("ALTREE_PARALLEL"); if (envvar) { parallel=atoi(envvar); } if (parallel == -1) { parallel=nbproc(); } if (parallel < 0) { parallel=0; } debug("parallel=%i", parallel); struct memory *mem=mem_alloc(tree); compute_chi2s(tree, lcc, &mem->temp, prolonge, results); int i; int cases=0; int controls=0; for(i=0; inb_leaves; i++) { cases += lcc[i].cases; controls += lcc[i].controls; } if (!parallel) { for(i=0; imax_depth; random_clades(tree->nb_leaves, lcc, cases, controls, mem->rand_lcc); compute_chi2s(tree, mem->rand_lcc, &mem->temp, prolonge, results); } } else { struct paractl ctl = { .permutation=parallel, .nb_permutations=nb_permutations, .tree=tree, .lcc=lcc, .cases=cases, .controls=controls, .prolonge=prolonge, .results=results+tree->max_depth, }; struct parainfo infos[parallel]; pthread_t tids[parallel]; for(i=0; i * double rhyper(double NR, double NB, double n); * * DESCRIPTION * * Random variates from the hypergeometric distribution. * Returns the number of white balls drawn when kk balls * are drawn at random from an urn containing nn1 white * and nn2 black balls. * * REFERENCE * * V. Kachitvichyanukul and B. Schmeiser (1985). * ``Computer generation of hypergeometric random variates,'' * Journal of Statistical Computation and Simulation 22, 127-145. * * The original algorithm had a bug -- R bug report PR#7314 -- * giving numbers slightly too small in case III h2pe * where (m < 100 || ix <= 50) , see below. */ #include "mt19937ar.h" #include "debug.h" #include "stdio.h" #include "stdlib.h" #include #include "rhyper.h" /* afc(i) := ln( i! ) [logarithm of the factorial i. * If (i > 7), use Stirling's approximation, otherwise use table lookup. */ struct afc_data { int computed; double al[1756]; }; double compute(int n, struct afc_data * __restrict__ data) { static long double cur=3628800; static int i=11; static volatile int mutex=0; while (__sync_lock_test_and_set(&mutex, 1)) { /* Internal loop with only read to avoid cache line ping-pong on multi-processors */ while(mutex) { /* spinlock */ } } for(; i<=n; i++) { cur*=i; data->al[i+1]=logl(cur); } data->computed=n; __sync_lock_release(&mutex); return data->al[i]; }; static double afc(int i) { double di, value; static struct afc_data data = { .computed = 10, .al = { 0.0, 0,/*ln(0!)*/ 0,/*ln(1!)*/ 0.693147180559945309,/*ln(2!)*/ 1.791759469228055,/*ln(3!)*/ 3.17805383034794562,/*ln(4!)*/ 4.78749174278204599,/*ln(5!)*/ 6.579251212010101,/*ln(6!)*/ 8.5251613610654143,/*ln(7!)*/ 10.6046029027452502,/*ln(8!)*/ 12.8018274800814696,/*ln(9!)*/ 15.1044125730755153,/*ln(10!)*/ } }; if (i < 0) { fprintf(stderr, "rhyper.c: afc(i), i=%d < 0 -- SHOULD NOT HAPPEN!\n", i); exit(1); } else if (i <= data.computed) { value = data.al[i + 1]; } else if (i <= 1754) { value = compute(i, &data); } else { di = i; value = (di + 0.5) * log(di) - di + 0.08333333333333 / di - 0.00277777777777 / di / di / di + 0.9189385332; } return value; } #define imin2(a,b) ({ \ typeof(a) _a=(a); \ typeof(b) _b=(b); \ (_a < _b) ? _a : _b ;\ }) #define imax2(a,b) ({ \ typeof(a) _a=(a); \ typeof(b) _b=(b); \ (_a > _b) ? _a : _b ;\ }) #define unif_rand() genrand_real2() int rhyper(int nn1, int nn2, int kk) { const static double con = 57.56462733; const static double deltal = 0.0078; const static double deltau = 0.0034; const static double scale = 1e25; /* extern double afc(int); */ int i, ix; int reject, setup1, setup2; double e, f, g, p, r, t, u, v, y; double de, dg, dr, ds, dt, gl, gu, nk, nm, ub; double xk, xm, xn, y1, ym, yn, yk, alv; /* These should become `thread_local globals' : */ //int ks = -1; //int n1s = -1, n2s = -1; int k, m; int minjx, maxjx, n1, n2; double a, d, s, w; double tn, xl, xr, kl, kr, lamdl, lamdr, p1, p2, p3; /* check parameter validity */ if (nn1 < 0 || nn2 < 0 || kk < 0 || kk > nn1 + nn2) return -1; /* if new parameter values, initialize */ reject = 1; //if (nn1 != n1s || nn2 != n2s) { setup1 = 1; setup2 = 1; /*} else if (kk != ks) { setup1 = 0; setup2 = 1; } else { setup1 = 0; setup2 = 0; }*/ if (setup1) { //n1s = nn1; //n2s = nn2; tn = nn1 + nn2; if (nn1 <= nn2) { n1 = nn1; n2 = nn2; } else { n1 = nn2; n2 = nn1; } } if (setup2) { //ks = kk; if (kk + kk >= tn) { k = (int)(tn - kk); } else { k = kk; } } if (setup1 || setup2) { m = (int) ((k + 1.0) * (n1 + 1.0) / (tn + 2.0)); minjx = imax2(0, k - n2); maxjx = imin2(n1, k); } /* generate random variate --- Three basic cases */ if (minjx == maxjx) { /* I: degenerate distribution ---------------- */ ix = maxjx; /* return ix; No, need to unmangle */ /* return appropriate variate */ if (kk + kk >= tn) { if (nn1 > nn2) { ix = kk - nn2 + ix; } else { ix = nn1 - ix; } } else { if (nn1 > nn2) ix = kk - ix; } //debug("RHYPER: (%i, %i, %i)=%i", nn1, nn2, kk, ix); assert(ix <= nn1); assert(kk-ix <= nn2); assert(ix <= kk); assert(0 <= ix); return ix; } else if (m - minjx < 10) { /* II: inverse transformation ---------- */ if (setup1 || setup2) { if (k < n2) { w = exp(con + afc(n2) + afc(n1 + n2 - k) - afc(n2 - k) - afc(n1 + n2)); } else { w = exp(con + afc(n1) + afc(k) - afc(k - n2) - afc(n1 + n2)); } } L10: p = w; ix = minjx; u = unif_rand() * scale; L20: if (u > p) { u -= p; p *= (n1 - ix) * (k - ix); ix++; p = p / ix / (n2 - k + ix); if (ix > maxjx) goto L10; goto L20; } } else { /* III : h2pe --------------------------------------------- */ if (setup1 || setup2) { s = sqrt((tn - k) * k * n1 * n2 / (tn - 1) / tn / tn); /* remark: d is defined in reference without int. */ /* the truncation centers the cell boundaries at 0.5 */ d = (int) (1.5 * s) + .5; xl = m - d + .5; xr = m + d + .5; a = afc(m) + afc(n1 - m) + afc(k - m) + afc(n2 - k + m); kl = exp(a - afc((int) (xl)) - afc((int) (n1 - xl)) - afc((int) (k - xl)) - afc((int) (n2 - k + xl))); kr = exp(a - afc((int) (xr - 1)) - afc((int) (n1 - xr + 1)) - afc((int) (k - xr + 1)) - afc((int) (n2 - k + xr - 1))); lamdl = -log(xl * (n2 - k + xl) / (n1 - xl + 1) / (k - xl + 1)); lamdr = -log((n1 - xr + 1) * (k - xr + 1) / xr / (n2 - k + xr)); p1 = d + d; p2 = p1 + kl / lamdl; p3 = p2 + kr / lamdr; } L30: u = unif_rand() * p3; v = unif_rand(); if (u < p1) { /* rectangular region */ ix = (int) (xl + u); } else if (u <= p2) { /* left tail */ ix = (int) (xl + log(v) / lamdl); if (ix < minjx) goto L30; v = v * (u - p1) * lamdl; } else { /* right tail */ ix = (int) (xr - log(v) / lamdr); if (ix > maxjx) goto L30; v = v * (u - p2) * lamdr; } /* acceptance/rejection test */ if (m < 100 || ix <= 50) { /* explicit evaluation */ /* The original algorithm (and TOMS 668) have f = f * i * (n2 - k + i) / (n1 - i) / (k - i); in the (m > ix) case, but the definition of the recurrence relation on p134 shows that the +1 is needed. */ f = 1.0; if (m < ix) { for (i = m + 1; i <= ix; i++) f = f * (n1 - i + 1) * (k - i + 1) / (n2 - k + i) / i; } else if (m > ix) { for (i = ix + 1; i <= m; i++) f = f * i * (n2 - k + i) / (n1 - i + 1) / (k - i + 1); } if (v <= f) { reject = 0; } } else { /* squeeze using upper and lower bounds */ y = ix; y1 = y + 1.0; ym = y - m; yn = n1 - y + 1.0; yk = k - y + 1.0; nk = n2 - k + y1; r = -ym / y1; s = ym / yn; t = ym / yk; e = -ym / nk; g = yn * yk / (y1 * nk) - 1.0; dg = 1.0; if (g < 0.0) dg = 1.0 + g; gu = g * (1.0 + g * (-0.5 + g / 3.0)); gl = gu - .25 * (g * g * g * g) / dg; xm = m + 0.5; xn = n1 - m + 0.5; xk = k - m + 0.5; nm = n2 - k + xm; ub = y * gu - m * gl + deltau + xm * r * (1. + r * (-0.5 + r / 3.0)) + xn * s * (1. + s * (-0.5 + s / 3.0)) + xk * t * (1. + t * (-0.5 + t / 3.0)) + nm * e * (1. + e * (-0.5 + e / 3.0)); /* test against upper bound */ alv = log(v); if (alv > ub) { reject = 1; } else { /* test against lower bound */ dr = xm * (r * r * r * r); if (r < 0.0) dr /= (1.0 + r); ds = xn * (s * s * s * s); if (s < 0.0) ds /= (1.0 + s); dt = xk * (t * t * t * t); if (t < 0.0) dt /= (1.0 + t); de = nm * (e * e * e * e); if (e < 0.0) de /= (1.0 + e); if (alv < ub - 0.25 * (dr + ds + dt + de) + (y + m) * (gl - gu) - deltal) { reject = 0; } else { /* * Stirling's formula to machine accuracy */ if (alv <= (a - afc(ix) - afc(n1 - ix) - afc(k - ix) - afc(n2 - k + ix))) { reject = 0; } else { reject = 1; } } } } if (reject) goto L30; } /* return appropriate variate */ if (kk + kk >= tn) { if (nn1 > nn2) { ix = kk - nn2 + ix; } else { ix = nn1 - ix; } } else { if (nn1 > nn2) ix = kk - ix; } //debug("RHYPER: (%i, %i, %i)=%i", nn1, nn2, kk, ix); assert(ix <= nn1); assert(kk-ix <= nn2); assert(ix <= kk); assert(0 <= ix); return ix; } #if TEST_AFC static double origafc(int i) { const static double al[9] = { 0.0, 0.0,/*ln(0!)=ln(1)*/ 0.0,/*ln(1!)=ln(1)*/ 0.69314718055994530941723212145817,/*ln(2) */ 1.79175946922805500081247735838070,/*ln(6) */ 3.17805383034794561964694160129705,/*ln(24)*/ 4.78749174278204599424770093452324, 6.57925121201010099506017829290394, 8.52516136106541430016553103634712 /*, 10.60460290274525022841722740072165*/ }; double di, value; if (i < 0) { fprintf(stderr, "rhyper.c: afc(i), i=%d < 0 -- SHOULD NOT HAPPEN!\n", i); exit(1); } else if (i <= 7) { value = al[i + 1]; } else { di = i; value = (di + 0.5) * log(di) - di + 0.08333333333333 / di - 0.00277777777777 / di / di / di + 0.9189385332; } return value; } static double afc2(int n) { static const double logpi=__builtin_log(M_PI); return n*log(n)-n+log(n*(1+4*n*(1+2*n)))/6+logpi/2; } static double afc3(int n) { static const double logpi=__builtin_log(M_PI); return n*log(n)-n+log(1+1/(2*n)+1/(8*n*n))/6+log(2*n)/2+logpi/2; } static double afc4(int n) { static const double logpi=__builtin_log(M_PI); static const double log2=__builtin_log(2); double logn=log(n); return n*logn-n+log(1+1/(2*n)+1/(8*n*n))/6+(logn+(logpi+log2))/2; } static double afc5(int n) { static long long int cur=1; static int i=1; for(; i<=n; i++) { cur*=i; } //printf(" %lli %i %i ", cur, i, n); return log(cur); } static double afc6(int n) { static long double cur=1; static int i=1; for(; i<=n; i++) { cur*=i; } //printf(" %lli %i %i ", cur, i, n); return logl(cur); } static double afc7(int n) { static long double cur=1; static int i=1; for(; i<=n; i++) { cur*=i; } //printf(" %lli %i %i ", cur, i, n); printf("\t%.18Lg, /* ln(%i!) = ln(%.0Lf) */\n",logl(cur),n,cur); return logl(cur); } static void compare(int k) { int i; printf(" %20s / %20s / %23s / %23s / %23s / %23sg / \n", "ref=exact(long double)", "my", "orig-ref", "orig-my", "my-ref", "exact(double)-ref"); for (i=1; i<=k; i++) { double ref=afc6(i); double ref2=afc(i); printf("log %4i! = %20.17lg / %20.17lg / %13.7lg / %13.7lg / %13.7lg / %13.7lg / %13.7lg / %13.7lg / %13.7lg\n", i, ref, ref2, origafc(i)-ref, origafc(i)-ref2, afc(i)-ref, afc5(i)-ref, afc2(i)-ref, afc3(i)-ref, afc4(i)-ref); } for (i=1; i<=50; i++) { afc7(i); } return; } int main(int argc, char**argv) { compare(1755); return 0; } #endif ALTree-v1.3.2/CUtils/c_sources/rhyper.h000066400000000000000000000001321412112337500176640ustar00rootroot00000000000000#ifndef _RHYPER_H #define _RHYPER_H int rhyper(int nn1in, int nn2in, int kkin); #endif ALTree-v1.3.2/CUtils/c_sources/stats.c000066400000000000000000000135521412112337500175160ustar00rootroot00000000000000 #include "debug.h" #include "stats.h" #include "fisher.h" #include "chisq.h" #include "rhyper.h" #include #include #include #include #include struct classical_chi2_res classical_chi2(int nb_nodes, const struct cc *nodes) { struct classical_chi2_res res={ .chi2=0.0, .chi2invalid=0, .error=0, .sum_control=0, .sum_case=0, }; int i; for (i=0; i=Seuil_ONLY_CASE) { res.significatif=sign_util; } break; case 4: res.texte=msprintf("Only one clade"); break; // Manque plein de trucs par rapport à la fonction dans chi2tree... default: fprintf(stderr, "invalid error %i\n", res.error); } return res; } datatype_t p_value; int ddl=nb_nodes-1; if (r.chi2invalid == 0) { if (sign_util) { res.significatif=chi2_significatif(ddl, r.chi2); } p_value=1-gsl_cdf_chisq_P(r.chi2, ddl); } else { if (texte) { res.warning=msprintf("Small sample size correction used"); } // J'ai pas compté dans combien de branches... if (ddl == 1) { p_value=bilateral(nodes[0].cases, nodes[0].controls, nodes[1].cases, nodes[1].controls); if (sign_util) { res.significatif=chi2_fisher_significatif(p_value); } } else { p_value = reech_chi2(r.sum_case, r.sum_control, nb_nodes, r.chi2, nodes, th); res.warning=msprintfcat(res.warning," (%.6g)",p_value); if (sign_util) { res.significatif = reech_significatif(p_value); if (texte && res.significatif != chi2_significatif(ddl, r.chi2)) { res.warning=msprintfcat(res.warning," Result has changed !"); } } } } res.chi2=r.chi2; res.p_val=p_value; return res; } static datatype_t *chi2_seuil=NULL; static int nb_seuils=0; static datatype_t chi2_p=-1; static datatype_t test_prop_p=-1; //Utilisé aussi pour le test F void definition_p_chi2(datatype_t p, datatype_t pprop) { if (p != -1) { chi2_p=p; } if (pprop != -1) { test_prop_p=pprop; } } int chi2_significatif(int ddl, datatype_t chi2) { if (ddl < 1) { fprintf(stderr, "Warning: chi[%i] asked...\n", ddl); } if (ddl >= nb_seuils) { chi2_seuil = realloc(chi2_seuil, (ddl+1)*sizeof(datatype_t)); bzero(chi2_seuil+nb_seuils, (ddl+1-nb_seuils)*sizeof(datatype_t)); nb_seuils=ddl+1; } if (chi2_seuil[ddl]==0.0) { assert(chi2_p >= 0.0); chi2_seuil[ddl]=critchi(chi2_p, ddl); } return (chi2 > chi2_seuil[ddl]); } int chi2_fisher_significatif(datatype_t pvalue) // "Meme fonction pour le test F, je ne la ré-écris pas..." !?!? { return pvalue < chi2_p; } datatype_t reech_chi2(int sum_case, int sum_control, int nb_nodes, int chi2_reel, const struct cc *nodes, struct cc *th) { int sum_total=sum_case+sum_control; datatype_t p_val=0.0; int i,k; for(i=0; i= chi2_reel){ p_val++; } } //debug("pval=%g\n", p_val/PERM); return (p_val/PERM); } int reech_significatif(datatype_t p_val) { return (p_val<=chi2_p); } void random_clades(int nb_nodes, const struct cc *nodes, int cases, int controls, struct cc *clades) { bzero(clades, nb_nodes*sizeof(struct cc)); int c; for(c=0; c #define Z_EPSILON 0.000001 /* accuracy of critz approximation */ #define Z_MAX 6.0 /* maximum meaningful z value */ #include "z.h" #ifdef ZTEST main () { double z; printf ("%4s %10s %10s %10s\n", "z", "poz(z)", "poz(-z)", "z'"); for (z = 0.0; z <= Z_MAX; z += .01) { printf ("%4.2f %10.6f %10.6f %10.6f\n", z, poz (z), poz (-z), critz (poz (z))); } } #endif /* ZTEST */ /*FUNCTION poz: probability of normal z value */ /*ALGORITHM Adapted from a polynomial approximation in: Ibbetson D, Algorithm 209 Collected Algorithms of the CACM 1963 p. 616 Note: This routine has six digit accuracy, so it is only useful for absolute z values < 6. For z values >= to 6.0, poz() returns 0.0. */ double /*VAR returns cumulative probability from -oo to z */ poz (z) double z; /*VAR normal z value */ { double y, x, w; if (z == 0.0) x = 0.0; else { y = 0.5 * fabs (z); if (y >= (Z_MAX * 0.5)) x = 1.0; else if (y < 1.0) { w = y*y; x = ((((((((0.000124818987 * w -0.001075204047) * w +0.005198775019) * w -0.019198292004) * w +0.059054035642) * w -0.151968751364) * w +0.319152932694) * w -0.531923007300) * w +0.797884560593) * y * 2.0; } else { y -= 2.0; x = (((((((((((((-0.000045255659 * y +0.000152529290) * y -0.000019538132) * y -0.000676904986) * y +0.001390604284) * y -0.000794620820) * y -0.002034254874) * y +0.006549791214) * y -0.010557625006) * y +0.011630447319) * y -0.009279453341) * y +0.005353579108) * y -0.002141268741) * y +0.000535310849) * y +0.999936657524; } } return (z > 0.0 ? ((x + 1.0) * 0.5) : ((1.0 - x) * 0.5)); } /*FUNCTION critz: compute critical z value to produce given probability */ /*ALGORITHM Begin with upper and lower limits for z values (maxz and minz) set to extremes. Choose a z value (zval) between the extremes. Compute the probability of the z value. Set minz or maxz, based on whether the probability is less than or greater than the desired p. Continue adjusting the extremes until they are within Z_EPSILON of each other. */ double /*VAR returns z such that fabs (poz(p) - z) <= .000001 */ critz (p) double p; /*VAR critical probability level */ { double minz = -Z_MAX; /* minimum of range of z */ double maxz = Z_MAX; /* maximum of range of z */ double zval = 0.0; /* computed/returned z value */ double poz (), pval; /* prob (z) function, pval := poz (zval) */ if (p <= 0.0 || p >= 1.0) return (0.0); while (maxz - minz > Z_EPSILON) { pval = poz (zval); if (pval > p) maxz = zval; else minz = zval; zval = (maxz + minz) * 0.5; } return (zval); } ALTree-v1.3.2/CUtils/c_sources/z.h000066400000000000000000000001541412112337500166300ustar00rootroot00000000000000#ifndef _Z_H #define _Z_H double poz (double z); double critz (double p); #endif ALTree-v1.3.2/CUtils/const-c.inc000066400000000000000000000032611412112337500162640ustar00rootroot00000000000000#define PERL_constant_NOTFOUND 1 #define PERL_constant_NOTDEF 2 #define PERL_constant_ISIV 3 #define PERL_constant_ISNO 4 #define PERL_constant_ISNV 5 #define PERL_constant_ISPV 6 #define PERL_constant_ISPVN 7 #define PERL_constant_ISSV 8 #define PERL_constant_ISUNDEF 9 #define PERL_constant_ISUV 10 #define PERL_constant_ISYES 11 #ifndef NVTYPE typedef double NV; /* 5.6 and later define NVTYPE, and typedef NV to it. */ #endif #ifndef aTHX_ #define aTHX_ /* 5.6 or later define this for threading support. */ #endif #ifndef pTHX_ #define pTHX_ /* 5.6 or later define this for threading support. */ #endif static int constant (pTHX_ const char *name, STRLEN len) { /* Initially switch on the length of the name. */ /* When generated this function returned values for the list of names given in this section of perl code. Rather than manually editing these functions to add or remove constants, which would result in this comment and section of code becoming inaccurate, we recommend that you edit this section of code, and use it to regenerate a new set of constant functions which you then use to replace the originals. Regenerate these constant functions by feeding this entire source file to perl -x #!/usr/bin/perl -w use ExtUtils::Constant qw (constant_types C_constant XS_constant); my $types = {map {($_, 1)} qw()}; my @names = (qw()); print constant_types(), "\n"; # macro defs foreach (C_constant ("ALTree::CUtils", 'constant', 'IV', $types, undef, 3, @names) ) { print $_, "\n"; # C constant subs } print "\n#### XS Section:\n"; print XS_constant ("ALTree::CUtils", $types); __END__ */ switch (len) { } return PERL_constant_NOTFOUND; } ALTree-v1.3.2/CUtils/const-xs.inc000066400000000000000000000051371412112337500165000ustar00rootroot00000000000000void constant(sv) PREINIT: #ifdef dXSTARG dXSTARG; /* Faster if we have it. */ #else dTARGET; #endif STRLEN len; int type; /* IV iv; Uncomment this if you need to return IVs */ /* NV nv; Uncomment this if you need to return NVs */ /* const char *pv; Uncomment this if you need to return PVs */ INPUT: SV * sv; const char * s = SvPV(sv, len); PPCODE: type = constant(aTHX_ s, len); /* Return 1 or 2 items. First is error message, or undef if no error. Second, if present, is found value */ switch (type) { case PERL_constant_NOTFOUND: sv = sv_2mortal(newSVpvf("%s is not a valid ALTree::CUtils macro", s)); PUSHs(sv); break; case PERL_constant_NOTDEF: sv = sv_2mortal(newSVpvf( "Your vendor has not defined ALTree::CUtils macro %s, used", s)); PUSHs(sv); break; /* Uncomment this if you need to return IVs case PERL_constant_ISIV: EXTEND(SP, 2); PUSHs(&PL_sv_undef); PUSHi(iv); break; */ /* Uncomment this if you need to return NOs case PERL_constant_ISNO: EXTEND(SP, 2); PUSHs(&PL_sv_undef); PUSHs(&PL_sv_no); break; */ /* Uncomment this if you need to return NVs case PERL_constant_ISNV: EXTEND(SP, 2); PUSHs(&PL_sv_undef); PUSHn(nv); break; */ /* Uncomment this if you need to return PVs case PERL_constant_ISPV: EXTEND(SP, 2); PUSHs(&PL_sv_undef); PUSHp(pv, strlen(pv)); break; */ /* Uncomment this if you need to return PVNs case PERL_constant_ISPVN: EXTEND(SP, 2); PUSHs(&PL_sv_undef); PUSHp(pv, iv); break; */ /* Uncomment this if you need to return SVs case PERL_constant_ISSV: EXTEND(SP, 2); PUSHs(&PL_sv_undef); PUSHs(sv); break; */ /* Uncomment this if you need to return UNDEFs case PERL_constant_ISUNDEF: break; */ /* Uncomment this if you need to return UVs case PERL_constant_ISUV: EXTEND(SP, 2); PUSHs(&PL_sv_undef); PUSHu((UV)iv); break; */ /* Uncomment this if you need to return YESs case PERL_constant_ISYES: EXTEND(SP, 2); PUSHs(&PL_sv_undef); PUSHs(&PL_sv_yes); break; */ default: sv = sv_2mortal(newSVpvf( "Unexpected return type %d while processing ALTree::CUtils macro %s, used", type, s)); PUSHs(sv); } ALTree-v1.3.2/CUtils/fallback/000077500000000000000000000000001412112337500157605ustar00rootroot00000000000000ALTree-v1.3.2/CUtils/fallback/const-c.inc000066400000000000000000000032751412112337500200300ustar00rootroot00000000000000#include "ppport.h" #define PERL_constant_NOTFOUND 1 #define PERL_constant_NOTDEF 2 #define PERL_constant_ISIV 3 #define PERL_constant_ISNO 4 #define PERL_constant_ISNV 5 #define PERL_constant_ISPV 6 #define PERL_constant_ISPVN 7 #define PERL_constant_ISSV 8 #define PERL_constant_ISUNDEF 9 #define PERL_constant_ISUV 10 #define PERL_constant_ISYES 11 #ifndef NVTYPE typedef double NV; /* 5.6 and later define NVTYPE, and typedef NV to it. */ #endif #ifndef aTHX_ #define aTHX_ /* 5.6 or later define this for threading support. */ #endif #ifndef pTHX_ #define pTHX_ /* 5.6 or later define this for threading support. */ #endif static int constant (pTHX_ const char *name, STRLEN len) { /* Initially switch on the length of the name. */ /* When generated this function returned values for the list of names given in this section of perl code. Rather than manually editing these functions to add or remove constants, which would result in this comment and section of code becoming inaccurate, we recommend that you edit this section of code, and use it to regenerate a new set of constant functions which you then use to replace the originals. Regenerate these constant functions by feeding this entire source file to perl -x #!/usr/bin/perl -w use ExtUtils::Constant qw (constant_types C_constant XS_constant); my $types = {map {($_, 1)} qw()}; my @names = (qw()); print constant_types(); # macro defs foreach (C_constant ("ALTree::CUtils", 'constant', 'IV', $types, undef, 3, @names) ) { print $_, "\n"; # C constant subs } print "#### XS Section:\n"; print XS_constant ("ALTree::CUtils", $types); __END__ */ switch (len) { } return PERL_constant_NOTFOUND; } ALTree-v1.3.2/CUtils/fallback/const-xs.inc000066400000000000000000000051471412112337500202400ustar00rootroot00000000000000#include "ppport.h" void constant(sv) PREINIT: #ifdef dXSTARG dXSTARG; /* Faster if we have it. */ #else dTARGET; #endif STRLEN len; int type; /* IV iv; Uncomment this if you need to return IVs */ /* NV nv; Uncomment this if you need to return NVs */ /* const char *pv; Uncomment this if you need to return PVs */ INPUT: SV * sv; const char * s = SvPV(sv, len); PPCODE: type = constant(aTHX_ s, len); /* Return 1 or 2 items. First is error message, or undef if no error. Second, if present, is found value */ switch (type) { case PERL_constant_NOTFOUND: sv = sv_2mortal(newSVpvf("%s is not a valid ALTree::CUtils macro", s)); PUSHs(sv); break; case PERL_constant_NOTDEF: sv = sv_2mortal(newSVpvf( "Your vendor has not defined ALTree::CUtils macro %s, used", s)); PUSHs(sv); break; /* Uncomment this if you need to return IVs case PERL_constant_ISIV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHi(iv); break; */ /* Uncomment this if you need to return NOs case PERL_constant_ISNO: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHs(&PL_sv_no); break; */ /* Uncomment this if you need to return NVs case PERL_constant_ISNV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHn(nv); break; */ /* Uncomment this if you need to return PVs case PERL_constant_ISPV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHp(pv, strlen(pv)); break; */ /* Uncomment this if you need to return PVNs case PERL_constant_ISPVN: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHp(pv, iv); break; */ /* Uncomment this if you need to return SVs case PERL_constant_ISSV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHs(sv); break; */ /* Uncomment this if you need to return UNDEFs case PERL_constant_ISUNDEF: break; */ /* Uncomment this if you need to return UVs case PERL_constant_ISUV: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHu((UV)iv); break; */ /* Uncomment this if you need to return YESs case PERL_constant_ISYES: EXTEND(SP, 1); PUSHs(&PL_sv_undef); PUSHs(&PL_sv_yes); break; */ default: sv = sv_2mortal(newSVpvf( "Unexpected return type %d while processing ALTree::CUtils macro %s, used", type, s)); PUSHs(sv); } ALTree-v1.3.2/CUtils/lib/000077500000000000000000000000001412112337500147675ustar00rootroot00000000000000ALTree-v1.3.2/CUtils/lib/ALTree/000077500000000000000000000000001412112337500161035ustar00rootroot00000000000000ALTree-v1.3.2/CUtils/lib/ALTree/CUtils.pm000066400000000000000000000060111412112337500176420ustar00rootroot00000000000000package ALTree::CUtils; use 5.008; use strict; use warnings; use Carp; require Exporter; use AutoLoader; our @ISA = qw(Exporter); # Items to export into callers namespace by default. Note: do not export # names by default without a very good reason. Use EXPORT_OK instead. # Do not simply export all your public functions/methods/constants. # This allows declaration use ALTree::CUtils ':all'; # If you do not need this, moving things directly into @EXPORT or @EXPORT_OK # will save memory. our %EXPORT_TAGS = ( 'all' => [ qw( bilateral critchi left pochisq right ) ] ); our @EXPORT_OK = ( @{ $EXPORT_TAGS{'all'} } ); our @EXPORT = qw( ); our $VERSION = '1.1'; sub AUTOLOAD { # This AUTOLOAD is used to 'autoload' constants from the constant() # XS function. my $constname; our $AUTOLOAD; ($constname = $AUTOLOAD) =~ s/.*:://; croak "&ALTree::CUtils::constant not defined" if $constname eq 'constant'; my ($error, $val) = constant($constname); if ($error) { croak $error; } { no strict 'refs'; # Fixed between 5.005_53 and 5.005_61 #XXX if ($] >= 5.00561) { #XXX *$AUTOLOAD = sub () { $val }; #XXX } #XXX else { *$AUTOLOAD = sub { $val }; #XXX } } goto &$AUTOLOAD; } require XSLoader; XSLoader::load('ALTree::CUtils', $VERSION); # Preloaded methods go here. # Autoload methods go after =cut, and are processed by the autosplit program. 1; __END__ # Below is stub documentation for your module. You'd better edit it! =head1 NAME ALTree::CUtils - Perl extension for blah blah blah =head1 SYNOPSIS use ALTree::CUtils; blah blah blah =head1 DESCRIPTION Stub documentation for ALTree::CUtils, created by h2xs. It looks like the author of the extension was negligent enough to leave the stub unedited. Blah blah blah. =head2 EXPORT None by default. =head2 Exportable functions double bilateral(double a, double b, double c, double d) double critchi(double p, int df) double left(double a, double b, double c, double d) double pochisq(double x, int df) double right(double a, double b, double c, double d) hash_ref double_permutation(int nb_sample, int nb_chi2, array_ref data) data : array of nb_sample*nb_chi2 doubles chi2_0_of_sample_0, chi2_1_of_sample_0, ..., chi2_0_of_sample_1, ... return keys: pmin => double chi2 => array of doubles =head1 SEE ALSO Mention other useful documentation such as the documentation of related modules or operating system documentation (such as man pages in UNIX), or any relevant external documentation such as RFCs or standards. If you have a mailing list set up for your module, mention it here. If you have a web site set up for your module, mention it here. =head1 AUTHOR Claire Bardel, EClaire.Bardel@univ-lyon1.frE =head1 COPYRIGHT AND LICENSE Copyright (C) 2005 by Claire Bardel This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.4 or, at your option, any later version of Perl 5 you may have available. =cut ALTree-v1.3.2/CUtils/ppport.h000066400000000000000000012065371412112337500157340ustar00rootroot00000000000000#if 0 <<'SKIP'; #endif /* ---------------------------------------------------------------------- ppport.h -- Perl/Pollution/Portability Version 3.57 Automatically created by Devel::PPPort running under perl 5.032001. Do NOT edit this file directly! -- Edit PPPort_pm.PL and the includes in parts/inc/ instead. Use 'perldoc ppport.h' to view the documentation below. ---------------------------------------------------------------------- SKIP =pod =head1 NAME ppport.h - Perl/Pollution/Portability version 3.57 =head1 SYNOPSIS perl ppport.h [options] [source files] Searches current directory for files if no [source files] are given --help show short help --version show version --patch=file write one patch file with changes --copy=suffix write changed copies with suffix --diff=program use diff program and options --compat-version=version provide compatibility with Perl version --cplusplus accept C++ comments --quiet don't output anything except fatal errors --nodiag don't show diagnostics --nohints don't show hints --nochanges don't suggest changes --nofilter don't filter input files --strip strip all script and doc functionality from ppport.h --list-provided list provided API --list-unsupported list unsupported API --api-info=name show Perl API portability information =head1 COMPATIBILITY This version of F is designed to support operation with Perl installations back to 5.003_07, and has been tested up to 5.31.6. =head1 OPTIONS =head2 --help Display a brief usage summary. =head2 --version Display the version of F. =head2 --patch=I If this option is given, a single patch file will be created if any changes are suggested. This requires a working diff program to be installed on your system. =head2 --copy=I If this option is given, a copy of each file will be saved with the given suffix that contains the suggested changes. This does not require any external programs. Note that this does not automagically add a dot between the original filename and the suffix. If you want the dot, you have to include it in the option argument. If neither C<--patch> or C<--copy> are given, the default is to simply print the diffs for each file. This requires either C or a C program to be installed. =head2 --diff=I Manually set the diff program and options to use. The default is to use C, when installed, and output unified context diffs. =head2 --compat-version=I Tell F to check for compatibility with the given Perl version. The default is to check for compatibility with Perl version 5.003_07. You can use this option to reduce the output of F if you intend to be backward compatible only down to a certain Perl version. =head2 --cplusplus Usually, F will detect C++ style comments and replace them with C style comments for portability reasons. Using this option instructs F to leave C++ comments untouched. =head2 --quiet Be quiet. Don't print anything except fatal errors. =head2 --nodiag Don't output any diagnostic messages. Only portability alerts will be printed. =head2 --nohints Don't output any hints. Hints often contain useful portability notes. Warnings will still be displayed. =head2 --nochanges Don't suggest any changes. Only give diagnostic output and hints unless these are also deactivated. =head2 --nofilter Don't filter the list of input files. By default, files not looking like source code (i.e. not *.xs, *.c, *.cc, *.cpp or *.h) are skipped. =head2 --strip Strip all script and documentation functionality from F. This reduces the size of F dramatically and may be useful if you want to include F in smaller modules without increasing their distribution size too much. The stripped F will have a C<--unstrip> option that allows you to undo the stripping, but only if an appropriate C module is installed. =head2 --list-provided Lists the API elements for which compatibility is provided by F. Also lists if it must be explicitly requested, if it has dependencies, and if there are hints or warnings for it. =head2 --list-unsupported Lists the API elements that are known not to be supported by F and below which version of Perl they probably won't be available or work. =head2 --api-info=I Show portability information for API elements matching I. If I is surrounded by slashes, it is interpreted as a regular expression. =head1 DESCRIPTION In order for a Perl extension (XS) module to be as portable as possible across differing versions of Perl itself, certain steps need to be taken. =over 4 =item * Including this header is the first major one. This alone will give you access to a large part of the Perl API that hasn't been available in earlier Perl releases. Use perl ppport.h --list-provided to see which API elements are provided by ppport.h. =item * You should avoid using deprecated parts of the API. For example, using global Perl variables without the C prefix is deprecated. Also, some API functions used to have a C prefix. Using this form is also deprecated. You can safely use the supported API, as F will provide wrappers for older Perl versions. =item * If you use one of a few functions or variables that were not present in earlier versions of Perl, and that can't be provided using a macro, you have to explicitly request support for these functions by adding one or more C<#define>s in your source code before the inclusion of F. These functions or variables will be marked C in the list shown by C<--list-provided>. Depending on whether you module has a single or multiple files that use such functions or variables, you want either C or global variants. For a C function or variable (used only in a single source file), use: #define NEED_function #define NEED_variable For a global function or variable (used in multiple source files), use: #define NEED_function_GLOBAL #define NEED_variable_GLOBAL Note that you mustn't have more than one global request for the same function or variable in your project. Function / Variable Static Request Global Request ----------------------------------------------------------------------------------------- caller_cx() NEED_caller_cx NEED_caller_cx_GLOBAL croak_xs_usage() NEED_croak_xs_usage NEED_croak_xs_usage_GLOBAL die_sv() NEED_die_sv NEED_die_sv_GLOBAL eval_pv() NEED_eval_pv NEED_eval_pv_GLOBAL grok_bin() NEED_grok_bin NEED_grok_bin_GLOBAL grok_hex() NEED_grok_hex NEED_grok_hex_GLOBAL grok_number() NEED_grok_number NEED_grok_number_GLOBAL grok_numeric_radix() NEED_grok_numeric_radix NEED_grok_numeric_radix_GLOBAL grok_oct() NEED_grok_oct NEED_grok_oct_GLOBAL load_module() NEED_load_module NEED_load_module_GLOBAL mess() NEED_mess NEED_mess_GLOBAL mess_nocontext() NEED_mess_nocontext NEED_mess_nocontext_GLOBAL mess_sv() NEED_mess_sv NEED_mess_sv_GLOBAL mg_findext() NEED_mg_findext NEED_mg_findext_GLOBAL my_snprintf() NEED_my_snprintf NEED_my_snprintf_GLOBAL my_sprintf() NEED_my_sprintf NEED_my_sprintf_GLOBAL my_strlcat() NEED_my_strlcat NEED_my_strlcat_GLOBAL my_strlcpy() NEED_my_strlcpy NEED_my_strlcpy_GLOBAL my_strnlen() NEED_my_strnlen NEED_my_strnlen_GLOBAL newCONSTSUB() NEED_newCONSTSUB NEED_newCONSTSUB_GLOBAL newSVpvn_share() NEED_newSVpvn_share NEED_newSVpvn_share_GLOBAL PL_parser NEED_PL_parser NEED_PL_parser_GLOBAL PL_signals NEED_PL_signals NEED_PL_signals_GLOBAL pv_display() NEED_pv_display NEED_pv_display_GLOBAL pv_escape() NEED_pv_escape NEED_pv_escape_GLOBAL pv_pretty() NEED_pv_pretty NEED_pv_pretty_GLOBAL sv_catpvf_mg() NEED_sv_catpvf_mg NEED_sv_catpvf_mg_GLOBAL sv_catpvf_mg_nocontext() NEED_sv_catpvf_mg_nocontext NEED_sv_catpvf_mg_nocontext_GLOBAL sv_setpvf_mg() NEED_sv_setpvf_mg NEED_sv_setpvf_mg_GLOBAL sv_setpvf_mg_nocontext() NEED_sv_setpvf_mg_nocontext NEED_sv_setpvf_mg_nocontext_GLOBAL sv_unmagicext() NEED_sv_unmagicext NEED_sv_unmagicext_GLOBAL utf8_to_uvchr_buf() NEED_utf8_to_uvchr_buf NEED_utf8_to_uvchr_buf_GLOBAL vload_module() NEED_vload_module NEED_vload_module_GLOBAL vmess() NEED_vmess NEED_vmess_GLOBAL warner() NEED_warner NEED_warner_GLOBAL To avoid namespace conflicts, you can change the namespace of the explicitly exported functions / variables using the C macro. Just C<#define> the macro before including C: #define DPPP_NAMESPACE MyOwnNamespace_ #include "ppport.h" The default namespace is C. =back The good thing is that most of the above can be checked by running F on your source code. See the next section for details. =head1 EXAMPLES To verify whether F is needed for your module, whether you should make any changes to your code, and whether any special defines should be used, F can be run as a Perl script to check your source code. Simply say: perl ppport.h The result will usually be a list of patches suggesting changes that should at least be acceptable, if not necessarily the most efficient solution, or a fix for all possible problems. If you know that your XS module uses features only available in newer Perl releases, if you're aware that it uses C++ comments, and if you want all suggestions as a single patch file, you could use something like this: perl ppport.h --compat-version=5.6.0 --cplusplus --patch=test.diff If you only want your code to be scanned without any suggestions for changes, use: perl ppport.h --nochanges You can specify a different C program or options, using the C<--diff> option: perl ppport.h --diff='diff -C 10' This would output context diffs with 10 lines of context. If you want to create patched copies of your files instead, use: perl ppport.h --copy=.new To display portability information for the C function, use: perl ppport.h --api-info=newSVpvn Since the argument to C<--api-info> can be a regular expression, you can use perl ppport.h --api-info=/_nomg$/ to display portability information for all C<_nomg> functions or perl ppport.h --api-info=/./ to display information for all known API elements. =head1 BUGS Some of the suggested edits and/or generated patches may not compile as-is without tweaking manually. This is generally due to the need for an extra parameter to be added to the call to prevent buffer overflow. If this version of F is causing failure during the compilation of this module, please check if newer versions of either this module or C are available on CPAN before sending a bug report. If F was generated using the latest version of C and is causing failure of this module, please send a bug report to L. Please include the following information: =over 4 =item 1. The complete output from running "perl -V" =item 2. This file. =item 3. The name and version of the module you were trying to build. =item 4. A full log of the build that failed. =item 5. Any other information that you think could be relevant. =back For the latest version of this code, please get the C module from CPAN. =head1 COPYRIGHT Version 3.x, Copyright (c) 2004-2013, Marcus Holland-Moritz. Version 2.x, Copyright (C) 2001, Paul Marquess. Version 1.x, Copyright (C) 1999, Kenneth Albanowski. This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself. =head1 SEE ALSO See L. =cut # These are tools that must be included in ppport.h. It doesn't work if given # a .pl suffix sub format_version { # Given an input version that is acceptable to parse_version(), return a # string of the standard representation of it. my($r,$v,$s) = parse_version(shift); if ($r < 5 || ($r == 5 && $v < 6)) { my $ver = sprintf "%d.%03d", $r, $v; $s > 0 and $ver .= sprintf "_%02d", $s; return $ver; } return sprintf "%d.%d.%d", $r, $v, $s; } sub parse_version { # Returns a triplet, (5, major, minor) from the input, treated as a string, # which can be in any of several typical formats. my $ver = shift; $ver = "" unless defined $ver; my($r,$v,$s); if ( ($r, $v, $s) = $ver =~ /^(5)(\d{3})(\d{3})$/ # 5029010, from the file # names in our # parts/base/ and # parts/todo directories or ($r, $v, $s) = $ver =~ /^(\d+)\.(\d+)\.(\d+)$/ # 5.25.7 or ($r, $v, $s) = $ver =~ /^(\d+)\.(\d{3})(\d{3})$/ # 5.025008, from the # output of $] or ($r, $v, $s) = $ver =~ /^(\d+)\.(\d{1,3})()$/ # 5.24, 5.004 or ($r, $v, $s) = $ver =~ /^(\d+)\.(00[1-5])_?(\d{2})$/ # 5.003_07 ) { $s = 0 unless $s; die "Only Perl 5 is supported '$ver'\n" if $r != 5; die "Invalid version number: $ver\n" if $v >= 1000 || $s >= 1000; return (5, 0 + $v, 0 + $s); } # For some safety, don't assume something is a version number if it has a # literal dot as one of the three characters. This will have to be fixed # when we reach 5.46 if ($ver !~ /\./ && (($r, $v, $s) = $ver =~ /^(.)(.)(.)$/)) # vstring 5.25.7 { $r = ord $r; $v = ord $v; $s = ord $s; die "Only Perl 5 is supported '$ver'\n" if $r != 5; return (5, $v, $s); } my $mesg = ""; $mesg = ". (In 5.00x_yz, x must be 1-5.)" if $ver =~ /_/; die "Invalid version number format: '$ver'$mesg\n"; } sub int_parse_version { # Returns integer 7 digit human-readable version, suitable for use in file # names in parts/todo parts/base. return 0 + join "", map { sprintf("%03d", $_) } parse_version(shift); } sub ivers # Shorter name for int_parse_version { return int_parse_version(shift); } sub format_version_line { # Returns a floating point representation of the input version my $version = int_parse_version(shift); $version =~ s/^5\B/5./; return $version; } sub dictionary_order($$) # Sort caselessly, ignoring punct { my ($lc_a, $lc_b); my ($squeezed_a, $squeezed_b); my ($valid_a, $valid_b); # Meaning valid for all releases # On early perls, the implicit pass by reference doesn't work, so we have # to use the globals to initialize. if ("$]" < "5.006" ) { $valid_a = $a; $valid_b = $b; } else { ($valid_a, $valid_b) = @_; } $lc_a = lc $valid_a; $lc_b = lc $valid_b; $squeezed_a = $lc_a; $squeezed_a =~ s/[\W_]//g; # No punct, including no underscore $squeezed_b = $lc_b; $squeezed_b =~ s/[\W_]//g; return( $squeezed_a cmp $squeezed_b or $lc_a cmp $lc_b or $valid_a cmp $valid_b); } sub sort_api_lines # Sort lines of the form flags|return|name|args... # by 'name' { $a =~ / ^ [^|]* \| [^|]* \| (\w+) /x; # 3rd field '|' is sep my $a_name = $1; $b =~ / ^ [^|]* \| [^|]* \| (\w+) /x; my $b_name = $1; return dictionary_order($a_name, $b_name); } 1; use strict; BEGIN { require warnings if "$]" > '5.006' } # Disable broken TRIE-optimization BEGIN { eval '${^RE_TRIE_MAXBUF} = -1' if "$]" >= 5.009004 && "$]" <= 5.009005 } my $VERSION = 3.57; my %opt = ( quiet => 0, diag => 1, hints => 1, changes => 1, cplusplus => 0, filter => 1, strip => 0, version => 0, ); my($ppport) = $0 =~ /([\w.]+)$/; my $LF = '(?:\r\n|[\r\n])'; # line feed my $HS = "[ \t]"; # horizontal whitespace # Never use C comments in this file! my $ccs = '/'.'*'; my $cce = '*'.'/'; my $rccs = quotemeta $ccs; my $rcce = quotemeta $cce; eval { require Getopt::Long; Getopt::Long::GetOptions(\%opt, qw( help quiet diag! filter! hints! changes! cplusplus strip version patch=s copy=s diff=s compat-version=s list-provided list-unsupported api-info=s )) or usage(); }; if ($@ and grep /^-/, @ARGV) { usage() if "@ARGV" =~ /^--?h(?:elp)?$/; die "Getopt::Long not found. Please don't use any options.\n"; } if ($opt{version}) { print "This is $0 $VERSION.\n"; exit 0; } usage() if $opt{help}; strip() if $opt{strip}; $opt{'compat-version'} = 5.003_07 unless exists $opt{'compat-version'}; $opt{'compat-version'} = int_parse_version($opt{'compat-version'}); my $int_min_perl = int_parse_version(5.003_07); # Each element of this hash looks something like: # 'Poison' => { # 'base' => '5.008000', # 'provided' => 1, # 'todo' => '5.003007' # }, my %API = map { /^(\w+)\|([^|]*)\|([^|]*)\|(\w*)$/ ? ( $1 => { ($2 ? ( base => $2 ) : ()), ($3 ? ( todo => $3 ) : ()), (index($4, 'v') >= 0 ? ( varargs => 1 ) : ()), (index($4, 'p') >= 0 ? ( provided => 1 ) : ()), (index($4, 'n') >= 0 ? ( noTHXarg => 1 ) : ()), (index($4, 'c') >= 0 ? ( core_only => 1 ) : ()), (index($4, 'd') >= 0 ? ( deprecated => 1 ) : ()), (index($4, 'i') >= 0 ? ( inaccessible => 1 ) : ()), (index($4, 'x') >= 0 ? ( experimental => 1 ) : ()), (index($4, 'u') >= 0 ? ( undocumented => 1 ) : ()), (index($4, 'o') >= 0 ? ( ppport_fnc => 1 ) : ()), (index($4, 'V') >= 0 ? ( unverified => 1 ) : ()), } ) : die "invalid spec: $_" } qw( abort_execution|5.025010||Viu add_above_Latin1_folds|5.021001||Viu add_cp_to_invlist|5.013011||Viu add_data|5.005000||nViu add_multi_match|5.021004||Viu _add_range_to_invlist|5.016000||cViu add_utf16_textfilter|5.011001||Viu adjust_size_and_find_bucket|5.019003||nViu advance_one_LB|5.023007||Viu advance_one_SB|5.021009||Viu advance_one_WB|5.021009||Viu alloccopstash|5.017001|5.017001|x alloc_LOGOP|5.025004||xViu allocmy|5.008001||Viu amagic_call|5.003007|5.003007|u amagic_cmp|5.009003||Viu amagic_cmp_locale|5.009003||Viu amagic_deref_call|5.013007|5.013007|u amagic_i_ncmp|5.009003||Viu amagic_is_enabled|5.015008||Viu amagic_ncmp|5.009003||Viu _aMY_CXT|5.009000|5.009000|p aMY_CXT_|5.009000|5.009000|p aMY_CXT|5.009000|5.009000|p anonymise_cv_maybe|5.013003||Viu any_dup|5.006000||Vu ao|5.005000||Viu _append_range_to_invlist|5.013010||Viu append_utf8_from_native_byte|5.019004||ncViu apply|5.003007||Viu apply_attrs|5.006000||Viu apply_attrs_my|5.007003||Viu apply_attrs_string|5.006001|5.006001|xu ARCHNAME|5.004000|5.004000| argvout_final|5.029006||Viu ASCII_TO_NEED|5.019004||ndcVu __ASSERT_|5.019007|5.008008|p assert_uft8_cache_coherent|5.013003||Viu assignment_type|5.021005||Viu atfork_lock|5.007002|5.007002|nu atfork_unlock|5.007002|5.007002|nu aTHX_|5.006000|5.003007|p aTHX|5.006000|5.003007|p aTHXR_||5.003007|pou aTHXR||5.003007|pou av_arylen_p|5.009003|5.009003|u av_clear|5.003007|5.003007| av_create_and_push|5.009005|5.009005|x av_create_and_unshift_one|5.009005|5.009005|x av_delete|5.006000|5.006000| av_exists|5.006000|5.006000| av_extend|5.003007|5.003007| av_extend_guts|5.017004||Viu av_fetch|5.003007|5.003007| av_fill|5.003007|5.003007| AvFILL|5.003007|5.003007| AvFILLp|5.004005|5.003007|poV av_iter_p|5.011000|5.011000|u av_len|5.003007|5.003007| av_make|5.003007|5.003007| av_nonelem|5.027009||Viu av_pop|5.003007|5.003007| av_push|5.003007|5.003007| av_reify|5.004004||cViu av_shift|5.003007|5.003007| av_store|5.003007|5.003007| av_tindex|5.017009|5.003007|p av_top_index|5.017009|5.003007|p av_undef|5.003007|5.003007| av_unshift|5.003007|5.003007| ax|5.003007|5.003007| backup_one_GCB|5.025003||Viu backup_one_LB|5.023007||Viu backup_one_SB|5.021009||Viu backup_one_WB|5.021009||Viu bad_type_gv|5.019002||Viu bad_type_pv|5.016000||Viu BhkDISABLE|||x BhkENABLE|||x BhkENTRY_set|||x BhkENTRY|||xi BhkFLAGS|||xi BIN|5.003007|5.003007| bind_match|5.003007||Viu block_end|5.004000|5.004000| block_gimme|5.004000|5.004000|u blockhook_register|5.013003|5.013003|x block_start|5.004000|5.004000| BOM_UTF8|5.025005|5.003007|p boolSV|5.004000|5.003007|p boot_core_mro|5.009005||Viu boot_core_PerlIO|5.007002||Viu boot_core_UNIVERSAL|5.003007||Viu _byte_dump_string|5.025006||cViu BYTEORDER|5.003007|5.003007| bytes_cmp_utf8|5.013007|5.013007| bytes_from_utf8|5.007001|5.007001|x bytes_from_utf8_loc|5.027001|5.027001|nxu bytes_to_utf8|5.006001|5.006001|x call_argv|5.006000|5.003007|p call_atexit|5.006000|5.006000|u CALL_BLOCK_HOOKS|||xi CALL_CHECKER_REQUIRE_GV|5.021004|5.021004| caller_cx|5.013005|5.006000|p call_list|5.004000|5.004000|u call_method|5.006000|5.003007|p calloc|5.007002|5.007002|n call_pv|5.006000|5.003007|p call_sv|5.006000|5.003007|p cando|5.003007||Viu C_ARRAY_END|5.013002|5.003007|p C_ARRAY_LENGTH|5.008001|5.003007|p CASTFLAGS|5.003007|5.003007| cast_i32|5.006000|5.006000|nu cast_iv|5.006000|5.006000|nu cast_ulong|5.006000|5.006000|nu cast_uv|5.006000|5.006000|nu category_name|5.027008||nViu cBOOL|5.013000|5.003007|p change_engine_size|5.029004||Viu CHARBITS|5.011002|5.011002| checkcomma|5.003007||Viu check_locale_boundary_crossing|5.015006||Viu check_type_and_open|5.009003||Viu check_uni|5.003007||Viu check_utf8_print|5.013009||Viu ck_entersub_args_core|||iu ck_entersub_args_list|5.013006|5.013006| ck_entersub_args_proto|5.013006|5.013006| ck_entersub_args_proto_or_list|5.013006|5.013006| ckWARN2|5.006000|5.006000| ckWARN2_d|5.006000|5.006000| ckWARN3|5.007003|5.007003| ckWARN3_d|5.007003|5.007003| ckWARN4|5.007003|5.007003| ckWARN4_d|5.007003|5.007003| ckWARN|5.006000|5.003007|p ckwarn|5.009003|5.009003|u ckwarn_common|5.011001||Viu ckWARN_d|5.006000|5.006000| ckwarn_d|5.009003|5.009003|u ck_warner|5.011001|5.011001|vu ck_warner_d|5.011001|5.011001|vu CLASS||5.003007| clear_defarray|5.023008|5.023008|u CLEAR_ERRSV|5.025007|5.025007| clear_placeholders|5.009004||xViu clear_special_blocks|5.021003||Viu clone_params_del|5.013002|5.013002|nu clone_params_new|5.013002|5.013002|nu closest_cop|5.007002||Viu cntrl_to_mnemonic|5.021004||ncViu compute_EXACTish|5.017003||nViu construct_ahocorasick_from_trie|5.021001||Viu cop_fetch_label|5.015001|5.015001|x CopFILE|5.006000||pVu CopFILEAV|5.006000||pVu CopFILEGV|5.006000||pVu CopFILEGV_set|5.006000||pVu CopFILE_set|5.006000||pVu CopFILESV|5.006000||pVu cop_free|5.006000||Viu cophh_2hv|5.013007|5.013007|x cophh_copy|5.013007|5.013007|x cophh_delete_pv|5.013007|5.013007|x cophh_delete_pvn|5.013007|5.013007|x cophh_delete_pvs|5.013007|5.013007|x cophh_delete_sv|5.013007|5.013007|x cophh_fetch_pv|5.013007|5.013007|x cophh_fetch_pvn|5.013007|5.013007|x cophh_fetch_pvs|5.013007|5.013007|x cophh_fetch_sv|5.013007|5.013007|x cophh_free|5.013007|5.013007|x COPHH_KEY_UTF8|5.013007|5.013007| cophh_new_empty|5.013007|5.013007|x cophh_store_pv|5.013007|5.013007|x cophh_store_pvn|5.013007|5.013007|x cophh_store_pvs|5.013007|5.013007|x cophh_store_sv|5.013007|5.013007|x cop_hints_2hv|5.013007|5.013007| cop_hints_fetch_pv|5.013007|5.013007| cop_hints_fetch_pvn|5.013007|5.013007| cop_hints_fetch_pvs|5.013007|5.013007| cop_hints_fetch_sv|5.013007|5.013007| CopLABEL|5.009005|5.009005| CopLABEL_len|5.016000|5.016000| CopLABEL_len_flags|5.016000|5.016000| CopSTASH|5.006000||pVu CopSTASH_eq|5.006000||pVu CopSTASHPV|5.006000||pVu CopSTASHPV_set|5.006000||pVu CopSTASH_set|5.006000||pVu cop_store_label|5.015001|5.015001|x Copy|5.003007|5.003007| CopyD|5.009002|5.003007|p core_prototype|5.015002||Vi coresub_op|5.015003||Viu CPERLscope|5.005000||pVu CPPLAST|5.006000|5.006000| CPPMINUS|5.003007|5.003007| CPPRUN|5.006000|5.006000| CPPSTDIN|5.003007|5.003007| create_eval_scope|5.009004||xViu croak|5.006000|5.003007|v croak_caller|5.025004||vnViu croak_memory_wrap|5.017006|5.003007|pnu croak_nocontext|5.006000||pvnVu croak_no_mem|5.017006||nViu croak_no_modify|5.013003|5.003007|pn croak_popstack|5.017008||ncViu croak_sv|5.013001|5.003007|p croak_xs_usage|5.010001|5.003007|pn cr_textfilter|5.006000||Viu csighandler1|||nu csighandler3|||nu csighandler|||nu current_re_engine|5.017001||cViu curse|5.013009||Viu custom_op_desc|5.007003|5.007003|d custom_op_get_field|5.019006||cViu custom_op_name|5.007003|5.007003|d custom_op_register|5.013007|5.013007| cv_ckproto_len_flags|5.015004||xcViu cv_clone|5.003007|5.003007| cv_clone_into|5.017004||Viu cv_const_sv|5.003007|5.003007|n cv_const_sv_or_av|5.019003||nViu CvDEPTH|5.003007|5.003007|nu cv_dump|5.006000||Vi cv_forget_slab|5.017002||Vi cv_get_call_checker|5.013006|5.013006| cv_get_call_checker_flags|5.027003|5.027003| CvGV|5.003007|5.003007|u cvgv_from_hek|||ciu cvgv_set|5.013003||cViu cv_name|5.021005|5.021005| CV_NAME_NOTQUAL|5.021005|5.021005| CvPADLIST|5.008001|5.008001|x cv_set_call_checker|5.013006|5.013006| cv_set_call_checker_flags|5.021004|5.021004| CvSTASH|5.003007|5.003007| cvstash_set|5.013007||cViu cv_undef|5.003007|5.003007| cv_undef_flags|5.021004||Viu CvWEAKOUTSIDE|||i CX_CURPAD_SAVE|||i CX_CURPAD_SV|||i cx_dump|5.005000|5.005000|u cx_dup|5.007003|5.007003|u cxinc|5.003007|5.003007|u cx_popblock|5.023008|5.023008|xu cx_popeval|5.023008|5.023008|xu cx_popformat|5.023008|5.023008|xu cx_popgiven|5.027008|5.027008|xu cx_poploop|5.023008|5.023008|xu cx_popsub|5.023008|5.023008|xu cx_popsub_args|5.023008|5.023008|xu cx_popsub_common|5.023008|5.023008|xu cx_popwhen|5.027008|5.027008|xu cx_pushblock|5.023008|5.023008|xu cx_pusheval|5.023008|5.023008|xu cx_pushformat|5.023008|5.023008|xu cx_pushgiven|5.027008|5.027008|xu cx_pushloop_for|5.023008|5.023008|xu cx_pushloop_plain|5.023008|5.023008|xu cx_pushsub|5.023008|5.023008|xu cx_pushwhen|5.027008|5.027008|xu cx_topblock|5.023008|5.023008|xu dAX|5.007002|5.003007|p dAXMARK|5.009003|5.003007|p deb|5.007003|5.007003|vu deb_curcv|5.007002||Viu deb_nocontext|5.007003|5.007003|vnu debop|5.005000|5.005000|u debprof|5.005000||Viu debprofdump|5.005000|5.005000|u debstack|5.007003|5.007003|u deb_stack_all|5.008001||Viu deb_stack_n|5.008001||Viu debstackptrs|5.007003|5.007003|u debug_start_match|5.009004||Viu DECLARATION_FOR_LC_NUMERIC_MANIPULATION|5.021010|5.021010| defelem_target|5.019002||Viu DEFSV|5.004005|5.003007|poVu DEFSV_set|5.010001||pVu delete_eval_scope|5.009004||xViu delimcpy|5.004000|5.004000|nu delimcpy_no_escape|5.025005||nViu del_sv|5.005000||Viu despatch_signals|5.007001|5.007001|u destroy_matcher|5.027008||Viu die|5.006000|5.003007|v die_nocontext|5.006000||vnVu die_sv|5.013001|5.003007|p die_unwind|5.013001||Viu dirp_dup|5.013007|5.013007|u dITEMS|5.007002|5.003007|p div128|5.005000||Viu djSP|||i dMARK|5.003007|5.003007| dMULTICALL|5.009003|5.009003| dMY_CXT|5.009000|5.009000|p dMY_CXT_SV|5.007003||poVu dNOOP|5.006000|5.003007|poVu do_aexec5|5.006000||Viu do_aexec|||iu do_aspawn|5.008000||Vu do_binmode|5.004005|5.004005|du docatch|5.005000||Vi do_chomp|5.003007||Viu do_close|5.003007|5.003007|u do_delete_local|5.011000||Viu do_dump_pad|5.008001||Vi do_eof|5.003007||Viu does_utf8_overflow|5.025006||nViu doeval_compile|5.023008||Viu do_exec3|5.006000||Viu do_exec|5.003007||Viu dofile|5.005003||Viu dofindlabel|5.003007||Viu doform|5.005000||Viu do_gv_dump|5.006000|5.006000|u do_gvgv_dump|5.006000|5.006000|u do_hv_dump|5.006000|5.006000|u doing_taint|5.008001|5.008001|nu do_ipcctl|5.003007||Viu do_ipcget|5.003007||Viu do_join|5.003007|5.003007|u do_magic_dump|5.006000|5.006000|u do_msgrcv|5.003007||Viu do_msgsnd|5.003007||Viu do_ncmp|5.015001||Viu do_oddball|5.006000||Viu dooneliner|5.006000||Viu do_op_dump|5.006000|5.006000|u do_open|5.003007|5.003007|u do_open6|5.019010||xViu do_open9|5.006000|5.006000|du do_openn|5.007001|5.007001|u doopen_pm|5.008001||Viu do_open_raw|5.019010||xViu doparseform|5.005000||Viu do_pmop_dump|5.006000|5.006000|u dopoptoeval|5.003007||Viu dopoptogivenfor|5.027008||Viu dopoptolabel|5.005000||Viu dopoptoloop|5.005000||Viu dopoptosub_at|5.005000||Viu dopoptowhen|5.027008||Viu do_print|5.003007||Viu do_readline|5.003007||Viu doref|5.009003|5.009003|u dORIGMARK|5.003007|5.003007| do_seek|5.003007||Viu do_semop|5.003007||Viu do_shmio|5.003007||Viu do_smartmatch|5.027008||Viu do_spawn|5.008000||Vu do_spawn_nowait|5.008000||Vu do_sprintf|5.003007|5.003007|u do_sv_dump|5.006000|5.006000|u do_sysseek|5.004000||Viu do_tell|5.003007||Viu do_trans|5.003007||Viu do_trans_complex|5.006001||Viu do_trans_count|5.006001||Viu do_trans_count_invmap|5.031006||Viu do_trans_invmap|5.031006||Viu do_trans_simple|5.006001||Viu DOUBLEINFBYTES|5.023000|5.023000| DOUBLEKIND|5.021006|5.021006| DOUBLEMANTBITS|5.023000|5.023000| DOUBLENANBYTES|5.023000|5.023000| DOUBLESIZE|5.005000|5.005000| dounwind|5.003007|5.003007|u DO_UTF8|5.006000|5.006000| do_vecget|5.006000||Viu do_vecset|5.003007||Viu do_vop|5.003007||Viu dowantarray|5.003007|5.003007|u drand48_init_r|||nciu drand48_r|||nciu dSAVEDERRNO|||i dSAVE_ERRNO|||i dSP|5.003007|5.003007| dTHR|5.004005|5.003007|p dTHX|5.003007|5.003007|p dTHXa|5.006000||pVu dTHXoa|5.006000||pVu dTHXR||5.003007|pou dtrace_probe_call|||ciu dtrace_probe_load|||ciu dtrace_probe_op|||ciu dtrace_probe_phase|||ciu dump_all|5.006000|5.006000| dump_all_perl|5.011000||Viu dump_c_backtrace|5.021001||V dump_eval|5.006000|5.006000|u dump_exec_pos|5.009004||Viu dump_form|5.006000|5.006000|u dump_indent|5.006000|5.006000|vu dump_mstats|5.003007||Vu dump_packsubs|5.006000|5.006000| dump_packsubs_perl|5.011000||Viu dump_regex_sets_structures|5.025006||Viu dump_sub|5.006000|5.006000|u dump_sub_perl|5.011000||Viu dump_sv_child|5.009003||Viu dump_trie|5.009004||Viu dump_trie_interim_list|5.009004||Viu dump_trie_interim_table|5.009004||Viu dumpuntil|5.005000||Viu dump_vindent|5.006000|5.006000|u dUNDERBAR|5.009002|5.003007|p dup_attrlist|5.006000||Viu dup_warnings|||ciu dVAR|5.009003|5.003007|p dXCPT|5.009002|5.003007|p dXSARGS|5.003007|5.003007| dXSI32|5.003007|5.003007|V dXSTARG|5.006000|5.003007|poVu edit_distance|5.023008||nViu emulate_cop_io|||xciu emulate_setlocale|5.027009||nViu END_EXTERN_C|5.005000|5.003007|poVu ENTER|5.003007|5.003007| ENTER_with_name|5.011002|5.011002| ERRSV|5.004005|5.003007|p eval_pv|5.006000|5.003007|p eval_sv|5.006000|5.003007|p exec_failed|5.009004||Viu expect_number|5.007001||Viu EXTEND|5.003007|5.003007| EXTERN_C|5.005000|5.003007|poVu F0convert|5.009003||nViu fbm_compile|5.005000|5.005000| fbm_instr|5.005000|5.005000| filter_add|5.003007|5.003007| filter_del|5.003007|5.003007|u filter_gets|5.005000||Viu filter_read|5.003007|5.003007| finalize_op|5.015002||Viu finalize_optree|5.015002||Vi find_and_forget_pmops|5.009005||Viu find_array_subscript|5.009004||Viu find_beginning|5.005000||Viu find_byclass|5.006000||Viu find_default_stash|5.019004||Viu find_first_differing_byte_pos|||nViu find_hash_subscript|5.009004||Viu find_in_my_stash|5.006001||Viu find_lexical_cv|5.019001||Viu find_next_masked|5.027009||nViu find_runcv|5.008001|5.008001| find_runcv_where|5.017002||Viu find_rundefsv|5.013002|5.013002| find_rundefsvoffset|5.009002|5.009002|d find_script|5.004005||Viu find_span_end|5.027009||nViu find_span_end_mask|5.027009||nViu find_uninit_var|5.009002||xVi first_symbol|5.009003||nViu fixup_errno_string|5.019007||Viu fold_constants|5.003007||Viu foldEQ|5.013002|5.013002|n foldEQ_latin1|5.013008|5.013008|nu foldEQ_latin1_s2_folded|5.029007||nViu foldEQ_locale|5.013002|5.013002|n foldEQ_utf8|5.013002|5.007003|p foldEQ_utf8_flags|5.013010||cVu forbid_setid|5.005000||Viu force_ident|5.003007||Viu force_ident_maybe_lex|5.017004||Viu force_list|5.003007||Viu force_next|5.003007||Viu _force_out_malformed_utf8_message|5.025009||cVu force_strict_version|5.011004||Viu force_version|5.005000||Viu force_word|5.003007||Viu forget_pmop|5.017007||Viu form|5.006000|5.004000|v form_alien_digit_msg|||ciu form_cp_too_large_msg|||ciu form_nocontext|5.006000||vnVu fp_dup|5.007003|5.007003|u fprintf_nocontext|5.006000||vndVu free_c_backtrace|5.021001||Vi free_global_struct|5.009003||Vu free_tied_hv_pool|5.008001||Viu FREETMPS|5.003007|5.003007| free_tmps|5.003007|5.003007|u G_ARRAY|5.003007|5.003007| G_DISCARD|5.003007|5.003007| gen_constant_list|5.003007||Viu get_and_check_backslash_N_name|5.017006||cViu get_and_check_backslash_N_name_wrapper|5.029009||Viu get_ANYOF_cp_list_for_ssc|5.019005||Viu get_ANYOFM_contents|5.027009||Viu get_aux_mg|5.011000||Viu get_av|5.006000|5.003007|p get_c_backtrace|5.021001||Vi get_c_backtrace_dump|5.021001||V get_context|5.006000|5.006000|nu get_cv|5.006000|5.003007|p get_cvn_flags|5.009005|5.003007|p get_cvs|5.011000||pVu getcwd_sv|5.007002|5.007002| get_db_sub|||iu get_debug_opts|5.008001||Viu getenv_len|5.006000||Viu get_hash_seed|5.008001||Viu get_hv|5.006000|5.003007|p get_invlist_iter_addr|5.015001||nViu get_invlist_offset_addr|5.019002||nViu get_invlist_previous_index_addr|5.017004||nViu get_mstats|5.006000||Vu get_no_modify|5.005000||Viu get_num|5.008001||Viu get_opargs|5.005000||Viu get_op_descs|5.005000|5.005000|u get_op_names|5.005000|5.005000|u get_ppaddr|5.006000|5.006000|u get_re_arg|||xciu _get_regclass_nonbitmap_data|5.019009||cViu get_regex_charset_name|5.031004||nViu get_sv|5.006000|5.003007|p GetVars|5.006000||Vu get_vtbl|5.005003|5.005003|u G_EVAL|5.003007|5.003007| GIMME|5.003007|5.003007| GIMME_V|5.004000|5.004000| gimme_V|5.031005|5.031005|xu glob_2number|5.009004||Viu glob_assign_glob|5.009004||Viu G_METHOD|5.006001|5.003007|p G_METHOD_NAMED|5.019002|5.019002| G_NOARGS|5.003007|5.003007| gp_dup|5.007003|5.007003|u gp_free|5.003007|5.003007|u gp_ref|5.003007|5.003007|u G_RETHROW|5.031002|5.003007|p grok_atoUV|5.021010||ncVi grok_bin|5.007003|5.003007|p grok_bin_oct_hex|||cVu grok_bslash_c|5.013001||cViu grok_bslash_N|5.017003||Viu grok_bslash_o|5.013003||cViu grok_bslash_x|5.017002||cViu grok_hex|5.007003|5.003007|p grok_infnan|5.021004|5.021004| grok_number|5.007002|5.003007|p grok_number_flags|5.021002|5.021002| GROK_NUMERIC_RADIX|5.007002|5.003007|p grok_numeric_radix|5.007002|5.003007|p grok_oct|5.007003|5.003007|p group_end|5.007003||Viu G_SCALAR|5.003007|5.003007| GV_ADD|5.003007|5.003007| gv_add_by_type|5.011000|5.011000|u GV_ADDMG|5.015003|5.015003| GV_ADDMULTI|5.003007|5.003007| Gv_AMupdate|5.011000|5.011000|u gv_autoload4|5.004000|5.004000|u gv_autoload_pv|5.015004|5.015004|u gv_autoload_pvn|5.015004|5.015004|u gv_autoload_sv|5.015004|5.015004|u GvAV|5.003007|5.003007| gv_AVadd|5.003007|5.003007|u gv_check|5.003007|5.003007|u gv_const_sv|5.009003|5.009003| GvCV|5.003007|5.003007| gv_dump|5.006000|5.006000|u gv_efullname3|5.003007|5.003007|u gv_efullname4|5.006001|5.006001|u gv_efullname|5.003007|5.003007|du gv_fetchfile|5.003007|5.003007|u gv_fetchfile_flags|5.009005|5.009005|u gv_fetchmeth|5.003007|5.003007| gv_fetchmeth_autoload|5.007003|5.007003| gv_fetchmeth_internal|5.021007||Viu gv_fetchmethod|5.003007|5.003007| gv_fetchmethod_autoload|5.004000|5.004000| gv_fetchmethod_pv_flags|5.015004|5.015004|xu gv_fetchmethod_pvn_flags|5.015004|5.015004|xu gv_fetchmethod_sv_flags|5.015004|5.015004|xu gv_fetchmeth_pv|5.015004|5.015004| gv_fetchmeth_pv_autoload|5.015004|5.015004| gv_fetchmeth_pvn|5.015004|5.015004| gv_fetchmeth_pvn_autoload|5.015004|5.015004| gv_fetchmeth_sv|5.015004|5.015004| gv_fetchmeth_sv_autoload|5.015004|5.015004| gv_fetchpv|5.003007|5.003007|u gv_fetchpvn_flags|5.009002|5.003007|pu gv_fetchpvs|5.009004||pVu gv_fetchsv|5.009002|5.003007|pu gv_fullname3|5.003007|5.003007|u gv_fullname4|5.006001|5.006001|u gv_fullname|5.003007|5.003007|du gv_handler|5.007001|5.007001|u GvHV|5.003007|5.003007| gv_HVadd|5.003007|5.003007|u gv_init|5.003007|5.003007| gv_init_pv|5.015004|5.015004| gv_init_pvn|5.015004|5.003007|p gv_init_sv|5.015004|5.015004| gv_init_svtype|5.015004||Viu gv_IOadd|5.003007|5.003007|u gv_is_in_main|5.019004||Viu gv_magicalize|5.019004||Viu gv_magicalize_isa|5.013005||Viu gv_name_set|5.009004|5.009004|u GV_NOADD_MASK|5.009005|5.003007|poVu GV_NOADD_NOINIT|5.009003|5.009003| GV_NOEXPAND|5.009003|5.009003| GV_NOINIT|5.004005|5.004005| G_VOID|5.004000|5.004000| gv_override|5.019006||Viu gv_setref|5.021005||Viu gv_stashpv|5.003007|5.003007| gv_stashpvn|5.003007|5.003007|p gv_stashpvn_internal|5.021004||Viu gv_stashpvs|5.009003|5.003007|p gv_stashsv|5.003007|5.003007| gv_stashsvpvn_cached|5.021004||Viu GV_SUPER|5.017004|5.017004| GvSV|5.003007|5.003007| gv_SVadd|||u GvSVn|5.009003||pVu gv_try_downgrade|5.011002||xcVi handle_named_backref|5.023008||Viu handle_possible_posix|5.023008||Viu handle_regex_sets|5.017009||Viu handle_user_defined_property|5.029008||cViu he_dup|5.007003|5.007003|u HEf_SVKEY|5.003007|5.003007|p HeHASH|5.003007|5.003007| hek_dup|5.009000|5.009000|u HeKEY|5.003007|5.003007| HeKLEN|5.003007|5.003007| HePV|5.004000|5.004000| HeSVKEY|5.003007|5.003007| HeSVKEY_force|5.003007|5.003007| HeSVKEY_set|5.004000|5.004000| HeUTF8|5.010001|5.008000|p HeVAL|5.003007|5.003007| hfree_next_entry|||iu hsplit|5.005000||Viu hv_assert|5.008009|5.008009| hv_auxinit|5.009003||Viu hv_auxinit_internal|5.019010||nViu hv_backreferences_p|||xiu hv_bucket_ratio|5.025003|5.025003|x hv_clear|5.003007|5.003007| hv_clear_placeholders|5.009001|5.009001| hv_common|5.010000|5.010000|u hv_common_key_len|5.010000|5.010000|u hv_copy_hints_hv|5.009004|5.009004| hv_delayfree_ent|5.004000|5.004000|u hv_delete|5.003007|5.003007| hv_delete_common|5.009001||xViu hv_delete_ent|5.003007|5.003007| hv_eiter_p|5.009003|5.009003|u hv_eiter_set|5.009003|5.009003|u HvENAME|5.013007|5.013007| hv_ename_add|5.013007||Vi hv_ename_delete|5.013007||Vi HvENAMELEN|5.015004|5.015004| HvENAMEUTF8|5.015004|5.015004| hv_exists|5.003007|5.003007| hv_exists_ent|5.003007|5.003007| hv_fetch|5.003007|5.003007| hv_fetch_ent|5.003007|5.003007| hv_fetchs|5.009003|5.003007|p HvFILL|5.003007|5.003007| hv_fill|5.013002|5.013002| hv_free_ent|5.004000|5.004000|u hv_free_ent_ret|5.015000||Viu hv_free_entries|5.027002||Viu hv_iterinit|5.003007|5.003007| hv_iterkey|5.003007|5.003007| hv_iterkeysv|5.003007|5.003007| hv_iternext|5.003007|5.003007| hv_iternext_flags|5.008000|5.008000|x hv_iternextsv|5.003007|5.003007| HV_ITERNEXT_WANTPLACEHOLDERS|5.008000|5.008000| hv_iterval|5.003007|5.003007| hv_kill_backrefs|||xiu hv_ksplit|5.003007|5.003007|u hv_magic|5.003007|5.003007| hv_magic_check|5.006000||nViu HvNAME|5.003007|5.003007| HvNAME_get|5.009003||pVu HvNAMELEN|5.015004|5.015004| HvNAMELEN_get|5.009003||pVu hv_name_set|5.009003|5.009003|u HvNAMEUTF8|5.015004|5.015004| hv_notallowed|5.008000||Viu hv_placeholders_get|5.009003|5.009003|u hv_placeholders_p|||ciu hv_placeholders_set|5.009003|5.009003|u hv_pushkv|5.027003||Viu hv_rand_set|5.018000|5.018000|u hv_riter_p|5.009003|5.009003|u hv_riter_set|5.009003|5.009003|u hv_scalar|5.009001|5.009001| hv_store|5.003007|5.003007| hv_store_ent|5.003007|5.003007| hv_store_flags|5.008000|5.008000|xu hv_stores|5.009004|5.003007|p hv_undef|5.003007|5.003007| hv_undef_flags|||ciu I16SIZE|5.006000|5.006000| I16TYPE|5.006000|5.006000| I32SIZE|5.006000|5.006000| I32TYPE|5.006000|5.006000| I8SIZE|5.006000|5.006000| I8TYPE|5.006000|5.006000| ibcmp|5.003007|5.003007| ibcmp_locale|5.004000|5.004000| ibcmp_utf8|5.007003|5.007003|u incline|5.005000||Viu incpush|5.005000||Viu incpush_if_exists|5.009003||Viu incpush_use_sep|5.011000||Viu ingroup|5.003007||Viu init_argv_symbols|5.007003||Viu init_constants|5.017003||Viu init_dbargs|||iu init_debugger|5.005000||Viu init_global_struct|5.009003||Vu init_i18nl10n|5.006000||cVu init_i18nl14n|5.006000||dcVu initialize_invlist_guts|5.029002||Viu init_ids|5.005000||Viu init_interp|5.005000||Viu init_main_stash|5.005000||Viu init_named_cv|5.027010||cViu init_perllib|5.005000||Viu init_postdump_symbols|5.005000||Viu init_predump_symbols|5.005000||Viu init_stacks|5.005000|5.005000|u init_tm|5.007002|5.007002|u init_uniprops|5.027011||Viu IN_LOCALE|5.007002|5.004000|p IN_LOCALE_COMPILETIME|5.007002|5.004000|p IN_LOCALE_RUNTIME|5.007002|5.004000|p IN_PERL_COMPILETIME|5.008001|5.003007|poVu inplace_aassign|5.015003||Viu instr|5.003007|5.003007|n INT2PTR|5.006000|5.003007|p intro_my|5.004000|5.004000| INTSIZE|5.003007|5.003007| intuit_method|5.005000||Viu intuit_more|5.003007||Viu _inverse_folds|5.027011||cViu invert|5.003007||Viu invlist_array|5.013010||nViu _invlist_array_init|5.015001||nViu invlist_clear|5.023009||Viu invlist_clone|5.015001||cViu _invlist_contains_cp|5.017003||nViu invlist_contents|5.023008||Viu _invlist_dump|5.019003||cViu _invlistEQ|5.023006||cViu invlist_extend|5.013010||Viu invlist_highest|5.017002||nViu _invlist_intersection|5.015001||Viu _invlist_intersection_maybe_complement_2nd|5.015008||cViu _invlist_invert|5.015001||cViu invlist_is_iterating|5.017008||nViu invlist_iterfinish|5.017008||nViu invlist_iterinit|5.015001||nViu invlist_iternext|5.015001||nViu _invlist_len|5.017004||nViu invlist_lowest|||nxViu invlist_max|5.013010||nViu invlist_previous_index|5.017004||nViu invlist_replace_list_destroys_src|5.023009||Viu _invlist_search|5.017003||ncViu invlist_set_len|5.013010||Viu invlist_set_previous_index|5.017004||nViu _invlist_subtract|5.015001||Viu invlist_trim|5.013010||nViu _invlist_union|5.015001||cVu _invlist_union_maybe_complement_2nd|5.015008||cViu invmap_dump|5.031006||Viu invoke_exception_hook|5.013001||Viu io_close|5.003007||Viu isALNUM|5.003007|5.003007|p isALNUM_A|5.031003|5.003007|p isALNUMC|5.006000|5.003007|p isALNUMC_A|5.013006|5.003007|p isALNUMC_L1|5.013006|5.003007|p isALNUMC_LC|5.006000|5.006000| isALNUMC_LC_uvchr|5.017007|5.017007| isALNUM_LC|5.004000|5.004000| isALNUM_LC_uvchr|5.007001|5.007001| isa_lookup|5.005000||Viu isALPHA|5.003007|5.003007|p isALPHA_A|5.013006|5.003007|p isALPHA_L1|5.013006|5.003007|p isALPHA_LC|5.004000|5.004000| isALPHA_LC_utf8_safe|5.025009|5.006000|p isALPHA_LC_uvchr|5.007001|5.007001| isALPHANUMERIC|5.017008|5.003007|p isALPHANUMERIC_A|5.017008|5.003007|p isALPHANUMERIC_L1|5.017008|5.003007|p isALPHANUMERIC_LC|5.017008|5.004000|p isALPHANUMERIC_LC_utf8_safe|5.025009|5.006000|p isALPHANUMERIC_LC_uvchr|5.017008|5.017008| isALPHANUMERIC_utf8|5.031005|5.031005| isALPHANUMERIC_utf8_safe|5.025009|5.006000|p isALPHANUMERIC_uvchr|5.023009|5.006000|p isALPHA_utf8|5.031005|5.031005| isALPHA_utf8_safe|5.025009|5.006000|p isALPHA_uvchr|5.023009|5.006000|p is_an_int|5.005000||Viu isASCII|5.006000|5.003007|p isASCII_A|5.013006|5.003007|p isASCII_L1|5.015004|5.003007|p isASCII_LC|5.015008|5.003007|p isASCII_LC_utf8_safe|5.025009|5.025009| isASCII_LC_uvchr|5.017007|5.017007| is_ascii_string|5.011000|5.011000|n isASCII_utf8|5.031005|5.031005| isASCII_utf8_safe|5.025009|5.003007|p isASCII_uvchr|5.023009|5.003007|p isBLANK|5.006001|5.003007|p isBLANK_A|5.013006|5.003007|p isBLANK_L1|5.013006|5.003007|p isBLANK_LC|5.006001|5.003007|p isBLANK_LC_utf8_safe|5.025009|5.006000|p isBLANK_LC_uvchr|5.017007|5.017007| isBLANK_utf8|5.031005|5.031005| isBLANK_utf8_safe|5.025009|5.006000|p isBLANK_uvchr|5.023009|5.006000|p isC9_STRICT_UTF8_CHAR|5.025005|5.025005|n is_c9strict_utf8_string|5.025006|5.025006|n is_c9strict_utf8_string_loc|5.025006|5.025006|n is_c9strict_utf8_string_loclen|5.025006|5.025006|n isCNTRL|5.006000|5.003007|p isCNTRL_A|5.013006|5.003007|p isCNTRL_L1|5.013006|5.003007|p isCNTRL_LC|5.006000|5.006000| isCNTRL_LC_utf8_safe|5.025009|5.006000|p isCNTRL_LC_uvchr|5.007001|5.007001| isCNTRL_utf8|5.031005|5.031005| isCNTRL_utf8_safe|5.025009|5.006000|p isCNTRL_uvchr|5.023009|5.006000|p _is_cur_LC_category_utf8|5.021001||cVu isDIGIT|5.003007|5.003007|p isDIGIT_A|5.013006|5.003007|p isDIGIT_L1|5.013006|5.003007|p isDIGIT_LC|5.004000|5.004000| isDIGIT_LC_utf8_safe|5.025009|5.006000|p isDIGIT_LC_uvchr|5.007001|5.007001| isDIGIT_utf8|5.031005|5.031005| isDIGIT_utf8_safe|5.025009|5.006000|p isDIGIT_uvchr|5.023009|5.006000|p isFF_OVERLONG|5.025007||nViu isFOO_lc|5.017007||cViu isFOO_utf8_lc|5.017008||Viu isGCB|5.021009||Viu isGRAPH|5.006000|5.003007|p isGRAPH_A|5.013006|5.003007|p is_grapheme|||Viu isGRAPH_L1|5.013006|5.003007|p isGRAPH_LC|5.006000|5.006000| isGRAPH_LC_utf8_safe|5.025009|5.006000|p isGRAPH_LC_uvchr|5.007001|5.007001| isGRAPH_utf8|5.031005|5.031005| isGRAPH_utf8_safe|5.025009|5.006000|p isGRAPH_uvchr|5.023009|5.006000|p isGV_with_GP|5.009004||pVu is_handle_constructor|5.006000||nViu isIDCONT|5.017008|5.003007|p isIDCONT_A|5.017008|5.003007|p isIDCONT_L1|5.017008|5.003007|p isIDCONT_LC|5.017008|5.004000|p isIDCONT_LC_utf8_safe|5.025009|5.006000|p isIDCONT_LC_uvchr|5.017008|5.017008| isIDCONT_utf8|5.031005|5.031005| isIDCONT_utf8_safe|5.025009|5.006000|p isIDCONT_uvchr|5.023009|5.006000|p isIDFIRST|5.003007|5.003007|p isIDFIRST_A|5.013006|5.003007|p isIDFIRST_L1|5.013006|5.003007|p isIDFIRST_LC|5.004000|5.004000|p isIDFIRST_LC_utf8_safe|5.025009|5.006000|p isIDFIRST_LC_uvchr|5.007001|5.007001| isIDFIRST_utf8|5.031005|5.031005| isIDFIRST_utf8_safe|5.025009|5.006000|p isIDFIRST_uvchr|5.023009|5.006000|p isinfnan|5.021004|5.021004|n isinfnansv|5.021005||Vi _is_in_locale_category|5.021001||cViu is_invariant_string|5.021007|5.011000|pn is_invlist|5.029002||nViu isLB|5.023007||Viu isLOWER|5.003007|5.003007|p isLOWER_A|5.013006|5.003007|p isLOWER_L1|5.013006|5.003007|p isLOWER_LC|5.004000|5.004000| isLOWER_LC_utf8_safe|5.025009|5.006000|p isLOWER_LC_uvchr|5.007001|5.007001| isLOWER_utf8|5.031005|5.031005| isLOWER_utf8_safe|5.025009|5.006000|p isLOWER_uvchr|5.023009|5.006000|p is_lvalue_sub|5.007001|5.007001|u IS_NUMBER_GREATER_THAN_UV_MAX|5.007002|5.003007|p IS_NUMBER_INFINITY|5.007002|5.003007|p IS_NUMBER_IN_UV|5.007002|5.003007|p IS_NUMBER_NAN|5.007003|5.003007|p IS_NUMBER_NEG|5.007002|5.003007|p IS_NUMBER_NOT_INT|5.007002|5.003007|p isOCTAL|5.013005|5.003007|p isOCTAL_A|5.013006|5.003007|p isOCTAL_L1|5.013006|5.003007|p isPRINT|5.004000|5.003007|p isPRINT_A|5.013006|5.003007|p isPRINT_L1|5.013006|5.003007|p isPRINT_LC|5.004000|5.004000| isPRINT_LC_utf8_safe|5.025009|5.006000|p isPRINT_LC_uvchr|5.007001|5.007001| isPRINT_utf8|5.031005|5.031005| isPRINT_utf8_safe|5.025009|5.006000|p isPRINT_uvchr|5.023009|5.006000|p isPSXSPC|5.006001|5.003007|p isPSXSPC_A|5.013006|5.003007|p isPSXSPC_L1|5.013006|5.003007|p isPSXSPC_LC|5.006001|5.006001| isPSXSPC_LC_utf8_safe|5.025009|5.006000|p isPSXSPC_LC_uvchr|5.017007|5.017007| isPSXSPC_utf8|5.031005|5.031005| isPSXSPC_utf8_safe|5.025009|5.006000|p isPSXSPC_uvchr|5.023009|5.006000|p isPUNCT|5.006000|5.003007|p isPUNCT_A|5.013006|5.003007|p isPUNCT_L1|5.013006|5.003007|p isPUNCT_LC|5.006000|5.006000| isPUNCT_LC_utf8_safe|5.025009|5.006000|p isPUNCT_LC_uvchr|5.007001|5.007001| isPUNCT_utf8|5.031005|5.031005| isPUNCT_utf8_safe|5.025009|5.006000|p isPUNCT_uvchr|5.023009|5.006000|p IS_SAFE_SYSCALL|5.019004|5.019004| is_safe_syscall|5.019004|5.019004| isSB|5.021009||Viu isSCRIPT_RUN|5.027008||cVi isSPACE|5.003007|5.003007|p isSPACE_A|5.013006|5.003007|p isSPACE_L1|5.013006|5.003007|p isSPACE_LC|5.004000|5.004000| isSPACE_LC_utf8_safe|5.025009|5.006000|p isSPACE_LC_uvchr|5.007001|5.007001| isSPACE_utf8|5.031005|5.031005| isSPACE_utf8_safe|5.025009|5.006000|p isSPACE_uvchr|5.023009|5.006000|p is_ssc_worth_it|5.021005||nViu isSTRICT_UTF8_CHAR|5.025005|5.025005|n is_strict_utf8_string|5.025006|5.025006|n is_strict_utf8_string_loc|5.025006|5.025006|n is_strict_utf8_string_loclen|5.025006|5.025006|n _is_uni_FOO|5.017008||cVu _is_uni_perl_idcont|5.017008||cVu _is_uni_perl_idstart|5.017007||cVu isUPPER|5.003007|5.003007|p isUPPER_A|5.013006|5.003007|p isUPPER_L1|5.013006|5.003007|p isUPPER_LC|5.004000|5.004000| isUPPER_LC_utf8_safe|5.025009|5.006000|p isUPPER_LC_uvchr|5.007001|5.007001| isUPPER_utf8|5.031005|5.031005| isUPPER_utf8_safe|5.025009|5.006000|p isUPPER_uvchr|5.023009|5.006000|p is_utf8_char|5.006000|5.006000|nd isUTF8_CHAR|5.021001|5.006001|pn is_utf8_char_buf|5.015008|5.015008|n isUTF8_CHAR_flags|5.025005|5.025005| is_utf8_char_helper|5.031004||ncVu is_utf8_common|5.009003||Viu is_utf8_cp_above_31_bits|5.025005||nViu is_utf8_fixed_width_buf_flags|5.025006|5.025006|n is_utf8_fixed_width_buf_loc_flags|5.025006|5.025006|n is_utf8_fixed_width_buf_loclen_flags|5.025006|5.025006|n _is_utf8_FOO|5.031006||cVu is_utf8_invariant_string|5.025005|5.011000|pn is_utf8_invariant_string_loc|5.027001|5.027001|n is_utf8_non_invariant_string|5.027007||ncVi is_utf8_overlong_given_start_byte_ok|5.025006||nViu _is_utf8_perl_idcont|5.031006||cVu _is_utf8_perl_idstart|5.031006||cVu is_utf8_string|5.006001|5.006001|n is_utf8_string_flags|5.025006|5.025006|n is_utf8_string_loc|5.008001|5.008001|n is_utf8_string_loc_flags|5.025006|5.025006|n is_utf8_string_loclen|5.009003|5.009003|n is_utf8_string_loclen_flags|5.025006|5.025006|n is_utf8_valid_partial_char|5.025005|5.025005|n is_utf8_valid_partial_char_flags|5.025005|5.025005|n isWB|5.021009||Viu isWORDCHAR|5.013006|5.003007|p isWORDCHAR_A|5.013006|5.003007|p isWORDCHAR_L1|5.013006|5.003007|p isWORDCHAR_LC|5.017007|5.004000|p isWORDCHAR_LC_utf8_safe|5.025009|5.006000|p isWORDCHAR_LC_uvchr|5.017007|5.017007| isWORDCHAR_utf8|5.031005|5.031005| isWORDCHAR_utf8_safe|5.025009|5.006000|p isWORDCHAR_uvchr|5.023009|5.006000|p isXDIGIT|5.006000|5.003007|p isXDIGIT_A|5.013006|5.003007|p isXDIGIT_L1|5.013006|5.003007|p isXDIGIT_LC|5.017007|5.003007|p isXDIGIT_LC_utf8_safe|5.025009|5.006000|p isXDIGIT_LC_uvchr|5.017007|5.017007| isXDIGIT_utf8|5.031005|5.031005| isXDIGIT_utf8_safe|5.025009|5.006000|p isXDIGIT_uvchr|5.023009|5.006000|p items|5.003007|5.003007|V IVdf|5.006000|5.003007|p IVSIZE|5.006000|5.003007|p IVTYPE|5.006000|5.003007|p ix|5.003007|5.003007|V jmaybe|5.003007||Viu join_exact|5.009004||Viu keyword|5.003007||Viu keyword_plugin_standard|||iu LATIN1_TO_NATIVE|5.019004|5.003007|p LEAVE|5.003007|5.003007| leave_adjust_stacks|5.023008|5.023008|xu leave_scope|5.003007|5.003007|u LEAVE_with_name|5.011002|5.011002| lex_bufutf8|5.011002|5.011002|x lex_discard_to|5.011002|5.011002|x lex_grow_linestr|5.011002|5.011002|x LEX_KEEP_PREVIOUS|5.011002|5.011002| lex_next_chunk|5.011002|5.011002|x lex_peek_unichar|5.011002|5.011002|x lex_read_space|5.011002|5.011002|x lex_read_to|5.011002|5.011002|x lex_read_unichar|5.011002|5.011002|x lex_start|5.009005|5.009005|x lex_stuff_pv|5.013006|5.013006|x lex_stuff_pvn|5.011002|5.011002|x lex_stuff_pvs|5.013005|5.013005|x lex_stuff_sv|5.011002|5.011002|x LEX_STUFF_UTF8|5.011002|5.011002| lex_unstuff|5.011002|5.011002|x LIKELY|5.009004|5.003007|p LINKLIST|5.013006|5.013006| list|5.003007||Viu listkids|5.003007||Viu load_module|5.006000|5.003007|pv load_module_nocontext|5.006000||vnVu localize|5.003007||Viu LONGDBLINFBYTES|5.023000|5.023000| LONGDBLMANTBITS|5.023000|5.023000| LONGDBLNANBYTES|5.023000|5.023000| LONGSIZE|5.004000|5.003007| looks_like_bool|5.027008||Viu looks_like_number|5.003007|5.003007| lop|5.005000||Viu lossless_NV_to_IV|5.031001||nViu LSEEKSIZE|5.006000|5.006000| LVRET|||i magic_clear_all_env|5.004001||Viu magic_cleararylen_p|5.017002||Viu magic_clearenv|5.003007||Viu magic_clearhint|5.009004||Vi magic_clearhints|5.011000||Vi magic_clearisa|5.010001||Viu magic_clearpack|5.003007||Viu magic_clearsig|5.003007||Viu magic_copycallchecker|5.017000||Viu magic_dump|5.006000|5.006000|u magic_existspack|5.003007||Viu magic_freearylen_p|5.009003||Viu magic_freeovrld|5.007001||Viu magic_get|5.003007||Viu magic_getarylen|5.003007||Viu magic_getdebugvar|5.021005||Viu magic_getdefelem|5.004000||Viu magic_getnkeys|5.004005||Viu magic_getpack|5.003007||Viu magic_getpos|5.003007||Viu magic_getsig|5.003007||Viu magic_getsubstr|5.004005||Viu magic_gettaint|5.003007||Viu magic_getuvar|5.003007||Viu magic_getvec|5.004005||Viu magic_killbackrefs|5.006000||Viu magic_methcall1|5.013001||Viu magic_methcall|||vi magic_methpack|5.005000||Viu magic_nextpack|5.003007||Viu magic_regdata_cnt|5.006000||Viu magic_regdatum_get|5.006000||Viu magic_regdatum_set|5.006001||Viu magic_scalarpack|5.009001||Viu magic_set|5.003007||Viu magic_set_all_env|5.004004||Viu magic_setarylen|5.003007||Viu magic_setcollxfrm|5.004000||Viu magic_setdbline|5.003007||Viu magic_setdebugvar|5.021005||Viu magic_setdefelem|5.004000||Viu magic_setenv|5.003007||Viu magic_sethint|5.009004||Vi magic_setisa|5.003007||Viu magic_setlvref|5.021005||Viu magic_setmglob|5.003007||Viu magic_setnkeys|5.003007||Viu magic_setnonelem|5.027009||Viu magic_setpack|5.003007||Viu magic_setpos|5.003007||Viu magic_setregexp|5.008001||Viu magic_setsig|5.003007||Viu magic_setsubstr|5.003007||Viu magic_settaint|5.003007||Viu magic_setutf8|5.008001||Viu magic_setuvar|5.003007||Viu magic_setvec|5.003007||Viu magic_sizepack|5.005000||Viu magic_wipepack|5.003007||Viu make_exactf_invlist|5.031006||Viu make_matcher|5.027008||Viu make_trie|5.009002||Viu malloc|5.007002|5.007002|n malloced_size|5.005000||nViu malloc_good_size|5.010001||nViu MARK|5.003007|5.003007| markstack_grow|5.021001|5.021001|u matcher_matches_sv|5.027008||Viu maybe_multimagic_gv|5.019004||Viu mayberelocate|5.015006||Viu measure_struct|5.007003||Viu memCHRs||5.003007|p mem_collxfrm|5.003007||dViu _mem_collxfrm|5.025002||Viu memEQ|5.004000|5.003007|p memEQs|5.009005|5.003007|p mem_log_alloc|5.024000||nViu mem_log_common|5.010001||nViu mem_log_free|5.024000||nViu mem_log_realloc|5.024000||nViu memNE|5.004000|5.003007|p memNEs|5.009005|5.003007|p mess|5.006000|5.004000|pv mess_alloc|5.005000||Viu mess_nocontext|5.006000||pvnVu mess_sv|5.013001|5.004000|p mfree|5.007002|5.007002|nu mg_clear|5.003007|5.003007| mg_copy|5.003007|5.003007| mg_dup|5.007003|5.007003|u mg_find|5.003007|5.003007|n mg_findext|5.013008|5.003007|pn mg_find_mglob|5.019002||cViu mg_free|5.003007|5.003007| mg_freeext|5.027004|5.027004| mg_free_type|5.013006|5.013006| mg_get|5.003007|5.003007| mg_length|5.005000|5.005000|d mg_localize|5.009003||Vi mg_magical|5.003007|5.003007|n mg_set|5.003007|5.003007| mg_size|5.005000|5.005000|u mini_mktime|5.007002|5.007002|nu minus_v|5.015006||Viu missingterm|5.005000||Viu mode_from_discipline|5.006000||Viu modkids|5.003007||Viu more_bodies|||iu more_sv|5.009004||Viu moreswitches|5.003007|5.003007|u Move|5.003007|5.003007| MoveD|5.009002|5.003007|p move_proto_attr|5.019005||Viu mPUSHi|5.009002|5.003007|p mPUSHn|5.009002|5.003007|p mPUSHp|5.009002|5.003007|p mPUSHs|5.010001|5.003007|p mPUSHu|5.009002|5.003007|p mro_clean_isarev|5.013007||Viu mro_gather_and_rename|5.013007||Viu mro_get_from_name|5.010001|5.010001|u mro_get_linear_isa|5.009005|5.009005| mro_get_linear_isa_dfs|5.009005||Vi mro_get_private_data|5.010001|5.010001| mro_isa_changed_in|5.009005||Vi mro_meta_dup|5.009005||Viu mro_meta_init|||ciu mro_method_changed_in|5.009005|5.009005| mro_package_moved|5.013006||Vi mro_register|5.010001|5.010001| mro_set_mro|5.010001|5.010001|u mro_set_private_data|5.010001|5.010001| mul128|5.005000||Viu MULTICALL|5.009003|5.009003| multiconcat_stringify|5.027006||cViu multideref_stringify|5.021009||cViu MUTABLE_PTR|5.010001||pVu MUTABLE_SV|5.010001||pVu mXPUSHi|5.009002|5.003007|p mXPUSHn|5.009002|5.003007|p mXPUSHp|5.009002|5.003007|p mXPUSHs|5.010001|5.003007|p mXPUSHu|5.009002|5.003007|p my_atof2|||cu my_atof3|5.029000||cVu my_atof|5.006000|5.006000|u my_attrs|5.006000||Viu my_bytes_to_utf8|5.021009||nViu my_chsize|5.003007||Vu my_clearenv|5.009003||Viu MY_CXT|5.009000|5.009000|p MY_CXT_CLONE|5.009002|5.009000|p my_cxt_index|||u MY_CXT_INIT|5.009000|5.009000|p my_cxt_init|5.009000|5.009000|u my_dirfd|5.009005|5.009005|nu my_exit|5.003007|5.003007| my_exit_jump|5.005000||Viu my_failure_exit|5.004000|5.004000|u my_fflush_all|5.006000|5.006000|u my_fork|5.007003|5.007003|nu my_kid|5.006000||Viu my_lstat_flags|5.013003||cViu my_lstat|||u my_memrchr|5.027006||nViu my_mkostemp_cloexec|||niu my_mkostemp|||niu my_mkstemp_cloexec|||niu my_mkstemp|||niu my_nl_langinfo|5.027006||nViu my_pclose|5.003007|5.003007|u my_popen|5.003007|5.003007|u my_popen_list|5.007001|5.007001|u my_setenv|5.003007|5.003007| my_snprintf|5.009004|5.003007|pvn my_socketpair|5.007003|5.007003|nu my_sprintf|5.009003|5.003007|pnd my_stat_flags|5.013003||cViu my_stat|||u my_strerror|5.021001||Viu my_strftime|5.007002|5.007002|u my_strlcat|5.009004|5.003007|pn my_strlcpy|5.009004|5.003007|pn my_strnlen|5.027006|5.003007|pn my_strtod|5.029010|5.029010|n my_unexec|5.003007||Viu my_vsnprintf|5.009004|5.009004|n NATIVE_TO_LATIN1|5.019004|5.003007|p NATIVE_TO_NEED|5.019004||ndcVu NATIVE_TO_UNI|5.007001|5.003007|p need_utf8|5.009003||nViu newANONATTRSUB|5.006000|5.006000|u newANONHASH|5.003007|5.003007|u newANONLIST|5.003007|5.003007|u newANONSUB|5.003007|5.003007|u newASSIGNOP|5.003007|5.003007| newATTRSUB|5.006000|5.006000|u newATTRSUB_x|5.019008||cVi newAV|5.003007|5.003007| newAVREF|5.003007|5.003007|u newBINOP|5.003007|5.003007| new_collate|5.006000||Viu newCONDOP|5.003007|5.003007| new_constant|||iu newCONSTSUB|5.004005|5.003007|p newCONSTSUB_flags|5.015006|5.015006| new_ctype|5.006000||Viu newCVREF|5.003007|5.003007|u newDEFSVOP|5.021006|5.021006| newFORM|5.003007|5.003007|u newFOROP|5.013007|5.013007| newGIVENOP|5.009003|5.009003| newGIVWHENOP|5.027008||Viu newGP|||xiu newGVgen|5.003007|5.003007|u newGVgen_flags|5.015004|5.015004|u newGVOP|5.003007|5.003007| newGVREF|5.003007|5.003007|u new_he|5.005000||Viu newHV|5.003007|5.003007| newHVhv|5.005000|5.005000|u newHVREF|5.003007|5.003007|u _new_invlist|5.013010||cViu _new_invlist_C_array|5.015008||cViu newIO|5.003007|5.003007|u newLISTOP|5.003007|5.003007| newLOGOP|5.003007|5.003007| new_logop|5.005000||Viu newLOOPEX|5.003007|5.003007| newLOOPOP|5.003007|5.003007| newMETHOP|5.021005|5.021005| newMETHOP_internal|5.021005||Viu newMETHOP_named|5.021005|5.021005| new_msg_hv|5.027009||Viu newMYSUB|5.017004|5.017004|u newNULLLIST|5.003007|5.003007| new_numeric|5.006000||Viu newOP|5.003007|5.003007| newPADNAMELIST|5.021007|5.021007|nx newPADNAMEouter|5.021007|5.021007|nx newPADNAMEpvn|5.021007|5.021007|nx newPADOP|5.006000||V newPMOP|5.003007|5.003007| newPROG|5.003007|5.003007|u newPVOP|5.003007|5.003007| newRANGE|5.003007|5.003007| new_regcurly|5.027001||nViu newRV|5.003007|5.003007|u newRV_inc|5.004000|5.003007|p newRV_noinc|5.004000|5.003007|p newSLICEOP|5.003007|5.003007| new_stackinfo|5.005000|5.005000|u newSTATEOP|5.003007|5.003007| newSTUB|5.017001||Viu newSUB|5.003007|5.003007|u newSV|5.003007|5.003007| newSVavdefelem|5.019004||Viu newSVhek|5.009003|5.009003| newSViv|5.003007|5.003007| newSVnv|5.006000|5.003007| newSVOP|5.003007|5.003007| newSVpadname|5.017004|5.017004|x newSVpv|5.003007|5.003007| newSVpvf|5.006000|5.004000|v newSVpvf_nocontext|5.006000||vnVu newSVpvn|5.004005|5.003007|p newSVpvn_flags|5.010001|5.003007|p newSVpvn_share|5.007001|5.003007|p newSVpvn_utf8|5.010001|5.003007|p newSVpvs|5.009003|5.003007|p newSVpvs_flags|5.010001|5.003007|p newSVpv_share|5.013006|5.013006| newSVpvs_share|5.009003|5.003007|p newSVREF|5.003007|5.003007|u newSVrv|5.003007|5.003007| newSVsv|5.003007|5.003007| newSVsv_flags|5.029009|5.003007|pu newSVsv_nomg|5.029009|5.003007|p newSV_type|5.009005|5.003007|p newSVuv|5.006000|5.003007|p newUNOP|5.003007|5.003007| newUNOP_AUX|5.021007|5.021007| new_version|5.009000|5.009000| new_warnings_bitfield|||xciu newWHENOP|5.027008|5.027008| newWHILEOP|5.013007|5.013007| Newx|5.009003|5.003007|p Newxc|5.009003|5.003007|p newXS|5.006000|5.006000| newXS_deffile|5.021006||cViu newXS_flags|5.009004|5.009004|xu newXS_len_flags|5.015006||Vi newXSproto|5.006000|5.006000| Newxz|5.009003|5.003007|p nextargv|5.003007||Viu nextchar|5.005000||Viu next_symbol|5.007003||Viu ninstr|5.003007|5.003007|n no_bareword_allowed|5.005004||Viu no_fh_allowed|5.003007||Viu no_op|5.003007||Viu NOOP|5.005000|5.003007|poVu noperl_die|5.021006||vnViu not_a_number|5.005000||Viu nothreadhook|5.008000|5.008000| notify_parser_that_changed_to_utf8|5.025010||Viu not_incrementable|5.021002||Viu nuke_stacks|5.005000||Viu Nullav|5.003007|5.003007|d Nullch|5.003007|5.003007| Nullcv|5.003007|5.003007|d Nullhv|5.003007|5.003007|d Nullsv|5.003007|5.003007| NUM2PTR|5.006000||pVu num_overflow|5.009001||nViu NVef|5.006001|5.003007|p NVff|5.006001|5.003007|p NVgf|5.006001|5.003007|p NVMANTBITS|5.023000|5.023000| NVSIZE|5.006001|5.006001| NVTYPE|5.006000|5.003007|p oopsAV|5.003007||Viu oopsHV|5.003007||Viu op_append_elem|5.013006|5.013006| op_append_list|5.013006|5.013006| OP_CLASS|5.013007|5.013007| op_class|5.025010|5.025010| op_clear|5.006000||cViu op_contextualize|5.013006|5.013006| op_convert_list|5.021006|5.021006| OP_DESC|5.007003|5.007003| op_dump|5.006000|5.006000| openn_cleanup|5.019010||Viu openn_setup|5.019010||Viu open_script|5.005000||Viu OPf_KIDS|5.003007|5.003007| op_free|5.003007|5.003007| OpHAS_SIBLING|5.021007|5.003007|p op_integerize|5.015003||Viu OpLASTSIB_set|5.021011|5.003007|p op_linklist|5.013006|5.013006| op_lvalue|5.013007|5.013007|x op_lvalue_flags|||ciu OpMAYBESIB_set|5.021011|5.003007|p opmethod_stash|5.021007||Viu OpMORESIB_set|5.021011|5.003007|p OP_NAME|5.007003|5.007003| op_null|5.007002|5.007002| op_parent|5.025001|5.025001|n OPpEARLY_CV|5.006000|5.006000| OPpENTERSUB_AMPER|5.003007|5.003007| op_prepend_elem|5.013006|5.013006| op_refcnt_dec|||xiu op_refcnt_inc|||xiu op_refcnt_lock|5.009002|5.009002|u op_refcnt_unlock|5.009002|5.009002|u op_relocate_sv|5.021005||Viu op_scope|5.013007|5.013007|x OpSIBLING|5.021007|5.003007|p op_sibling_splice|5.021002|5.021002|n opslab_force_free|5.017002||Viu opslab_free|5.017002||Viu opslab_free_nopad|5.017002||Viu op_std_init|5.015003||Viu optimize_op|5.027006||Viu optimize_optree|5.027006||Vi OP_TYPE_IS|5.019007|5.019007| OP_TYPE_IS_OR_WAS|5.019010|5.019010| op_unscope|5.017003||xViu ORIGMARK|5.003007|5.003007| OSNAME|5.003007|5.003007| OSVERS|5.007002|5.007002| output_non_portable|||Viu output_posix_warnings|5.029005||Viu package|5.003007||Viu package_version|5.011001||Viu pack_cat||| packlist|5.008001|5.008001| pack_rec|5.008001||Viu packWARN|5.007003||pVu pad_add_anon|5.008001|5.008001| pad_add_name_pv|5.015001|5.015001| pad_add_name_pvn|5.015001|5.015001| pad_add_name_pvs|5.015001|5.015001| pad_add_name_sv|5.015001|5.015001| pad_add_weakref|5.021007||Viu pad_alloc|5.003007|5.003007|x pad_alloc_name|5.015001||Vi PadARRAY|5.017004|5.017004|x PAD_BASE_SV|||i pad_block_start|5.008001||Vi pad_check_dup|5.008001||Vi PAD_CLONE_VARS|||i PAD_COMPNAME_FLAGS|||i PAD_COMPNAME_GEN|||i PAD_COMPNAME_GEN_set|||i PAD_COMPNAME_OURSTASH|||i PAD_COMPNAME_PV|||i pad_compname_type||| PAD_COMPNAME_TYPE|||i pad_findlex|5.005000||Vi pad_findmy_pv|5.015001|5.015001| pad_findmy_pvn|5.015001|5.015001| pad_findmy_pvs|5.015001|5.015001| pad_findmy_sv|5.015001|5.015001| pad_fixup_inner_anons|5.008001||Vi pad_free|5.003007||Vi pad_leavemy|5.003007||Vi PadlistARRAY|5.017004|5.017004|x padlist_dup|5.013002||Vi PadlistMAX|5.017004|5.017004|x PadlistNAMES|5.017004|5.017004|x PadlistNAMESARRAY|5.017004|5.017004|x PadlistNAMESMAX|5.017004|5.017004|x PadlistREFCNT|5.017004|5.017004|x padlist_store|5.017004||Viu PadMAX|5.017004|5.017004|x padname_dup|5.021007||Vi padname_free|||ciu PadnameIN_SCOPE|5.031004||nViu PadnameIsOUR|||i PadnameIsSTATE|||i PadnameLEN|5.017004|5.017004|x PadnamelistARRAY|5.017004|5.017004|x padnamelist_dup|5.021007||Vi padnamelist_fetch|5.021007|5.021007|nx padnamelist_free|||ciu PadnamelistMAX|5.017004|5.017004|x PadnamelistREFCNT|5.021007|5.021007|x PadnamelistREFCNT_dec|5.021007|5.021007|x padnamelist_store|5.021007|5.021007|x PadnameOURSTASH|||i PadnameOUTER|||i PadnamePV|5.017004|5.017004|x PadnameREFCNT|5.021007|5.021007|x PadnameREFCNT_dec|5.021007|5.021007|x PadnameSV|5.017004|5.017004|x PADNAMEt_OUTER|5.021007|5.021007| PadnameTYPE|||i PadnameUTF8|5.017004|5.017004|x pad_new|5.008001|5.008001| pad_push|5.008001||cVi pad_reset|5.003007||Vi PAD_RESTORE_LOCAL|||i PAD_SAVE_LOCAL|||i PAD_SAVE_SETNULLPAD|||i PAD_SET_CUR|||i PAD_SET_CUR_NOSAVE|||i pad_setsv|5.008001|5.008001| PAD_SETSV|||i pad_sv|5.003007||V PAD_SV|||i PAD_SVl|||i pad_swipe|5.003007||Vi pad_tidy|5.008001|5.008001|x parse_arithexpr|5.013008|5.013008|x parse_barestmt|5.013007|5.013007|x parse_block|5.013007|5.013007|x parse_body|5.006000||Viu parse_fullexpr|5.013008|5.013008|x parse_fullstmt|5.013005|5.013005|x parse_gv_stash_name|5.019004||Viu parse_ident|5.017010||Viu parse_label|5.013007|5.013007|x parse_listexpr|5.013008|5.013008|x parse_lparen_question_flags|5.017009||Viu PARSE_OPTIONAL|5.013007|5.013007| parser_dup|5.009000|5.009000|u parser_free|5.009005||Viu parser_free_nexttoke_ops|5.017006||Viu parse_stmtseq|5.013006|5.013006|x parse_subsignature|5.031003|5.031003|x parse_termexpr|5.013008|5.013008|x parse_unicode_opts|5.008001||Viu parse_uniprop_string|5.027011||cViu path_is_searchable|5.019001||nViu peep|5.003007||Viu pending_ident|5.017004||Viu PERL_ABS|5.008001|5.003007|p perl_alloc|5.003007|5.003007|n perl_alloc_using|5.006000||nVu PERL_BCDVERSION||5.003007|pou perl_clone|5.006000||nV perl_clone_using|5.006000||nVu perl_construct|5.003007|5.003007|n Perl_custom_op_xop|5.013007||V perl_destruct|5.007003|5.007003|n Perl_eval_pv||5.003007|ou Perl_eval_sv||5.003007|ou PERL_EXIT_ABORT|5.019003|5.019003| PERL_EXIT_DESTRUCT_END|5.007003|5.007003| PERL_EXIT_EXPECTED|5.006000|5.006000| PERL_EXIT_WARN|5.019003|5.019003| perl_free|5.003007|5.003007|n PERL_HASH|5.003007|5.003007|p PERL_INT_MAX|5.003007|5.003007|p PERL_INT_MIN|5.003007|5.003007|p PerlIO_apply_layers|5.007001|5.007001| PerlIO_binmode|5.007001|5.007001| PerlIO_canset_cnt|5.003007|5.003007|n PerlIO_clearerr|5.007003|5.007003| PerlIO_close|5.007003|5.007003| PerlIO_context_layers|5.009004|5.009004|u PerlIO_debug|5.007001|5.007001| PerlIO_eof|5.007003|5.007003| PerlIO_error|5.007003|5.007003| PerlIO_exportFILE|5.003007|5.003007|n PerlIO_fast_gets|5.003007|5.003007|n PerlIO_fdopen|5.003007|5.003007|n PerlIO_fileno|5.007003|5.007003| PerlIO_fill|5.007003|5.007003|u PerlIO_findFILE|5.003007|5.003007|n PerlIO_flush|5.007003|5.007003| PERLIO_FUNCS_CAST|5.009003||pVu PERLIO_FUNCS_DECL|5.009003||pVu PerlIO_get_base|5.007003|5.007003| PerlIO_get_bufsiz|5.007003|5.007003| PerlIO_getc|5.003007|5.003007|n PerlIO_get_cnt|5.007003|5.007003| PerlIO_getpos|5.003007|5.003007|n PerlIO_get_ptr|5.007003|5.007003| PerlIO_has_base|5.003007|5.003007|n PerlIO_has_cntptr|5.003007|5.003007|n PerlIO_importFILE|5.003007|5.003007|n PerlIO_open|5.003007|5.003007|n PerlIO_printf|5.006000|5.003007| PerlIO_putc|5.003007|5.003007|n PerlIO_puts|5.003007|5.003007|n PerlIO_read|5.007003|5.007003| PerlIO_releaseFILE|5.003007|5.003007|n PerlIO_reopen|5.003007|5.003007| PerlIO_restore_errno|5.021006||cViu PerlIO_rewind|5.003007|5.003007|n PerlIO_save_errno|5.021006||cViu PerlIO_seek|5.007003|5.007003| PerlIO_set_cnt|5.007003|5.007003| PerlIO_setlinebuf|5.007003|5.007003| PerlIO_setpos|5.003007|5.003007|n PerlIO_set_ptrcnt|5.007003|5.007003| PerlIO_stderr|5.007003|5.007003| PerlIO_stdin|5.007003|5.007003| PerlIO_stdout|5.007003|5.007003| PerlIO_stdoutf|5.006000|5.003007| PerlIO_tell|5.007003|5.007003| PerlIO_ungetc|5.003007|5.003007|n PerlIO_unread|5.007003|5.007003|u PerlIO_vprintf|5.003007|5.003007|n PerlIO_write|5.007003|5.007003| Perl_langinfo|5.027004|5.027004|n PerlLIO_dup2_cloexec|5.027008||Viu PerlLIO_dup_cloexec|5.027008||Viu PerlLIO_open3_cloexec|5.027008||Viu PerlLIO_open_cloexec|5.027008||Viu PERL_LOADMOD_DENY|5.006000|5.003007| PERL_LOADMOD_IMPORT_OPS|5.006000|5.003007| PERL_LOADMOD_NOIMPORT|5.006000|5.003007| PERL_LONG_MAX|5.003007|5.003007|p PERL_LONG_MIN|5.003007|5.003007|p PERL_MAGIC_arylen|5.007002|5.003007|p PERL_MAGIC_arylen_p|5.009003|5.009003| PERL_MAGIC_backref|5.007002|5.003007|p PERL_MAGIC_bm|5.007002|5.003007|p PERL_MAGIC_checkcall|5.013006|5.013006| PERL_MAGIC_collxfrm|5.007002|5.003007|p PERL_MAGIC_dbfile|5.007002|5.003007|p PERL_MAGIC_dbline|5.007002|5.003007|p PERL_MAGIC_debugvar|5.021005|5.021005| PERL_MAGIC_defelem|5.007002|5.003007|p PERL_MAGIC_env|5.007002|5.003007|p PERL_MAGIC_envelem|5.007002|5.003007|p PERL_MAGIC_ext|5.007002|5.003007|p PERL_MAGIC_fm|5.007002|5.003007|p PERL_MAGIC_glob||5.003007|pou PERL_MAGIC_hints|5.009004|5.009004| PERL_MAGIC_hintselem|5.009004|5.009004| PERL_MAGIC_isa|5.007002|5.003007|p PERL_MAGIC_isaelem|5.007002|5.003007|p PERL_MAGIC_lvref|5.021005|5.021005| PERL_MAGIC_mutex||5.003007|pou PERL_MAGIC_nkeys|5.007002|5.003007|p PERL_MAGIC_nonelem|5.027009|5.027009| PERL_MAGIC_overload||5.003007|pou PERL_MAGIC_overload_elem||5.003007|pou PERL_MAGIC_overload_table|5.007002|5.003007|p PERL_MAGIC_pos|5.007002|5.003007|p PERL_MAGIC_qr|5.007002|5.003007|p PERL_MAGIC_regdata|5.007002|5.003007|p PERL_MAGIC_regdatum|5.007002|5.003007|p PERL_MAGIC_regex_global|5.007002|5.003007|p PERL_MAGIC_rhash|5.009003|5.009003| PERL_MAGIC_shared|5.007003|5.003007|p PERL_MAGIC_shared_scalar|5.007003|5.003007|p PERL_MAGIC_sig|5.007002|5.003007|p PERL_MAGIC_sigelem|5.007002|5.003007|p PERL_MAGIC_substr|5.007002|5.003007|p PERL_MAGIC_sv|5.007002|5.003007|p PERL_MAGIC_symtab|5.009003|5.009003| PERL_MAGIC_taint|5.007002|5.003007|p PERL_MAGIC_tied|5.007002|5.003007|p PERL_MAGIC_tiedelem|5.007002|5.003007|p PERL_MAGIC_tiedscalar|5.007002|5.003007|p PERL_MAGIC_utf8|5.008001|5.003007|p PERL_MAGIC_uvar|5.007002|5.003007|p PERL_MAGIC_uvar_elem|5.007003|5.003007|p PERL_MAGIC_vec|5.007002|5.003007|p PERL_MAGIC_vstring|5.008001|5.003007|p perl_parse|5.006000|5.006000|n PerlProc_pipe_cloexec|5.027008||Viu PERL_PV_ESCAPE_ALL|5.009004|5.003007|p PERL_PV_ESCAPE_FIRSTCHAR|5.009004|5.003007|p PERL_PV_ESCAPE_NOBACKSLASH|5.009004|5.003007|p PERL_PV_ESCAPE_NOCLEAR|5.009004|5.003007|p PERL_PV_ESCAPE_NONASCII|5.013009|5.013009| PERL_PV_ESCAPE_QUOTE|5.009004|5.003007|p PERL_PV_ESCAPE_RE|5.009005|5.003007|p PERL_PV_ESCAPE_UNI|5.009004|5.003007|p PERL_PV_ESCAPE_UNI_DETECT|5.009004|5.003007|p PERL_PV_PRETTY_DUMP|5.009004|5.003007|poVu PERL_PV_PRETTY_ELLIPSES|5.010000|5.003007|p PERL_PV_PRETTY_LTGT|5.009004|5.003007|p PERL_PV_PRETTY_NOCLEAR|5.010000|5.003007|poVu PERL_PV_PRETTY_QUOTE|5.009004|5.003007|p PERL_PV_PRETTY_REGPROP|5.009004|5.003007|poVu PERL_QUAD_MAX|5.003007|5.003007|p PERL_QUAD_MIN|5.003007|5.003007|p PERL_REVISION|5.006000|5.003007|p perl_run|5.003007|5.003007|n PERL_SCAN_ALLOW_UNDERSCORES|5.007003|5.003007|p PERL_SCAN_DISALLOW_PREFIX|5.007003|5.003007|p PERL_SCAN_GREATER_THAN_UV_MAX|5.007003|5.003007|p PERL_SCAN_SILENT_ILLDIGIT|5.008001|5.003007|p PERL_SCAN_TRAILING|5.021002|5.021002| Perl_setlocale|5.027002|5.027002|n PERL_SHORT_MAX|5.003007|5.003007|p PERL_SHORT_MIN|5.003007|5.003007|p PERL_SIGNALS_UNSAFE_FLAG|5.008001|5.003007|poVu Perl_signbit|5.009005|5.009005|nx PerlSock_accept_cloexec|5.027008||Viu PerlSock_socket_cloexec|5.027008||Viu PerlSock_socketpair_cloexec|5.027008||Viu PERL_SUBVERSION|5.006000|5.003007|p PERL_SYS_INIT3|5.006000|5.006000| PERL_SYS_INIT|5.003007|5.003007| PERL_SYS_TERM|5.003007|5.003007| PERL_UCHAR_MAX|5.003007|5.003007|p PERL_UCHAR_MIN|5.003007|5.003007|p PERL_UINT_MAX|5.003007|5.003007|p PERL_UINT_MIN|5.003007|5.003007|poVu PERL_ULONG_MAX|5.003007|5.003007|p PERL_ULONG_MIN|5.003007|5.003007|p PERL_UNUSED_ARG|5.009003||pVu PERL_UNUSED_CONTEXT|5.009004|5.003007|poVu PERL_UNUSED_DECL|5.007002|5.003007|poVu PERL_UNUSED_RESULT|5.021001||pVu PERL_UNUSED_VAR|5.007002||pVu PERL_UQUAD_MAX|5.003007|5.003007|p PERL_UQUAD_MIN|5.003007|5.003007|p PERL_USE_GCC_BRACE_GROUPS|5.009004|5.004000|poVu PERL_USHORT_MAX|5.003007|5.003007|p PERL_USHORT_MIN|5.003007|5.003007|p PERL_VERSION|5.006000|5.003007|p perly_sighandler|||nu pidgone|5.003007||Viu PL_bufend||5.003007|pou PL_bufptr||5.003007|pou PL_check|5.009003|5.006000| PL_compiling|5.004005|5.003007|poVu PL_comppad|5.008001|5.008001|x PL_comppad_name|5.017004|5.017004|x PL_copline||5.003007|pou PL_curcop|5.004005|5.003007|p PL_curpad|5.005000|5.005000|x PL_curstash|5.004005|5.003007|p PL_DBsignal|5.005000|5.003007|poVu PL_DBsingle|5.004005|5.003007|poV PL_DBsub|5.004005|5.003007|poV PL_DBtrace|5.005000|5.003007|poV PL_debstash|5.004005|5.003007|poVu PL_defgv|5.004005|5.003007|p PL_diehook|5.004005|5.003007|poVu PL_dirty|5.004005|5.003007|poVu PL_dowarn|5.004005|5.003007|poV PL_errgv|5.004005|5.003007|p PL_error_count||5.003007|pou PL_exit_flags|5.006000|5.006000| PL_expect||5.003007|pou PL_hexdigit|5.005000|5.003007|poVu PL_hints|5.005000|5.003007|poVu PL_in_my||5.003007|pou PL_in_my_stash||5.005000|pou PL_keyword_plugin|5.011002|5.011002|x PL_last_in_gv|||i PL_laststatval|5.005000|5.003007|poVu PL_lex_state||5.003007|pou PL_lex_stuff||5.003007|pou PL_linestr||5.003007|pou PL_mess_sv|5.005000|5.004000|poVu PL_modglobal|5.005000|5.005000| PL_na|5.004005|5.003007|p PL_no_modify|5.006000|5.003007|poVu PL_ofsgv|||i PL_opfreehook|5.011000|5.011000| PL_parser|5.009005|5.003007|p PL_peepp|5.007003|5.007003| PL_perldb|5.004005|5.003007|poVu PL_perl_destruct_level|5.004005|5.003007|p PL_phase|5.013007|5.013007| PL_ppaddr|5.006000|5.003007|poVu PL_rpeepp|5.013005|5.013005| PL_rsfp||5.003007|pou PL_rsfp_filters||5.003007|pou PL_rs|||i PL_runops|5.006000|5.006000| PL_signals|5.008001||pVu PL_stack_base|5.004005|5.003007|poVu PL_stack_sp|5.004005|5.003007|poVu PL_statcache|5.005000|5.003007|poVu PL_stdingv|5.004005|5.003007|poVu PL_Sv|5.005000|5.003007|poVu PL_sv_arenaroot|5.004005|5.003007|poVu PL_sv_no|5.004005|5.003007|p PL_sv_undef|5.004005|5.003007|p PL_sv_yes|5.004005|5.003007|p PL_sv_zero|5.027003|5.027003| PL_tainted|5.004005|5.003007|poVu PL_tainting|5.004005|5.003007|poVu PL_tokenbuf||5.003007|pou PL_Xpv|5.005000|5.003007|poVu pm_description|5.009004||Viu pmop_dump|5.006000|5.006000|u pmruntime|5.003007||Viu pmtrans|5.003007||Viu _pMY_CXT|5.007003|5.009000|pV pMY_CXT_|5.007003|5.009000|pV pMY_CXT|5.009000|5.009000|p Poison|5.008000|5.003007|p PoisonFree|5.009004|5.003007|p PoisonNew|5.009004|5.003007|p PoisonWith|5.009004|5.003007|p POPi|5.003007|5.003007| POPl|5.003007|5.003007| POPMARK|||ciu POP_MULTICALL|5.009003|5.009003| POPn|5.006000|5.003007| POPp|5.003007|5.003007| POPpbytex|5.007001|5.007001| POPpx|5.005003|5.005003| POPs|5.003007|5.003007| pop_scope|5.003007|5.003007|u POPu|5.004000|5.004000| POPul|5.006000|5.006000| populate_ANYOF_from_invlist|5.019005||Viu populate_isa|||viu pregcomp|5.009005|5.009005|u pregexec|5.003007|5.003007|u pregfree2|5.011000|5.011000|u pregfree|5.003007|5.003007|u prescan_version|5.011004|5.011004| printbuf|5.009004||Viu print_bytes_for_locale|5.027002||Viu print_collxfrm_input_and_return|5.025004||Viu printf_nocontext|5.007001|5.007001|vndu PRIVLIB|5.003007|5.003007| process_special_blocks|5.009005||Viu pTHX|5.006000|5.003007|p pTHX_|5.006000|5.003007|pV PTR2IV|5.006000|5.003007|p PTR2nat|5.009003||pVu PTR2NV|5.006000|5.003007|p PTR2ul|5.007001||pVu PTR2UV|5.006000|5.003007|p ptr_hash|5.017010||nViu PTRSIZE|5.005000|5.005000| ptr_table_clear|5.009005|5.009005|du ptr_table_fetch|5.009005|5.009005|u ptr_table_find|5.009004||nViu ptr_table_free|5.009005|5.009005|u ptr_table_new|5.009005|5.009005|u ptr_table_split|5.009005|5.009005|u ptr_table_store|5.009005|5.009005|u PTRV|5.006000|5.003007|poVu PUSHi|5.003007|5.003007| PUSHMARK|5.003007|5.003007| PUSHmortal|5.009002|5.003007|p PUSH_MULTICALL|5.011000|5.011000| PUSHn|5.006000|5.003007| PUSHp|5.003007|5.003007| PUSHs|5.003007|5.003007| push_scope|5.003007|5.003007|u PUSHu|5.004000|5.003007|p PUTBACK|5.003007|5.003007| put_charclass_bitmap_innards|5.021004||Viu put_charclass_bitmap_innards_common|5.023008||Viu put_charclass_bitmap_innards_invlist|5.023008||Viu put_code_point|5.021004||Viu put_range|5.019009||Viu pv_display|5.006000|5.003007|p pv_escape|5.009004|5.003007|p pv_pretty|5.009004|5.003007|p pv_uni_display|5.007003|5.007003| qerror|5.006000||cViu quadmath_format_needed|5.021004||nVi quadmath_format_valid|||nVi RANDBITS|5.003007|5.003007| READ_XDIGIT|5.017006|5.017006| realloc|5.007002|5.007002|n ReANY|||ncu re_compile|5.009005|5.009005|u re_croak2|||iu re_dup_guts|5.011000|5.011000|u reentrant_free|5.010000|5.010000|u reentrant_init|5.010000|5.010000|u reentrant_retry|5.010000|5.010000|vnu reentrant_size|5.010000|5.010000|u re_exec_indentf|5.023009||vViu ref|5.003007||Vu ref_array_or_hash|5.027008||Viu refcounted_he_chain_2hv|5.013007||cVi refcounted_he_fetch_pv|5.013007||cVi refcounted_he_fetch_pvn|5.013007||cVi refcounted_he_fetch_pvs|||i refcounted_he_fetch_sv|5.013007||cVi refcounted_he_free|5.013007||cVi refcounted_he_inc|5.013007||cVi refcounted_he_new_pv|5.013007||cVi refcounted_he_new_pvn|5.013007||cVi refcounted_he_new_pvs|||i refcounted_he_new_sv|5.013007||cVi refcounted_he_value|5.009004||Viu refkids|5.003007||Viu refto|5.005000||Viu reg2Lanode|5.021005||Viu reg|5.005000||Viu reganode|5.005000||Viu regatom|5.005000||Viu regbranch|5.005000||Viu reg_check_named_buff_matched|5.009005||nViu regclass|5.005000||Viu regcppop|5.005000||Viu regcppush|5.005000||Viu regcp_restore|5.025006||Viu regcurly|5.013010||nViu regdump|5.005000|5.005000|u regdump_extflags|5.009005||Viu regdump_intflags|5.019002||Viu regdupe_internal|5.009000|5.009000|u regexec_flags|5.005000|5.005000|u regex_set_precedence|5.021010||nViu regfree_internal|5.009005|5.009005|u reghop3|5.007001||nViu reghop4|5.009005||nViu reghopmaybe3|5.007001||nViu reginclass|5.005000||Viu reginitcolors|5.006000|5.006000|u reginsert|5.005000||Viu regmatch|5.005000||Viu reg_named_buff|5.009005||cViu reg_named_buff_all|5.009005|5.009005|u reg_named_buff_exists|5.009005|5.009005|u reg_named_buff_fetch|5.009005|5.009005|u reg_named_buff_firstkey|5.009005|5.009005|u reg_named_buff_iter|5.009005||cViu reg_named_buff_nextkey|5.009005|5.009005|u reg_named_buff_scalar|5.009005|5.009005|u regnext|5.005000|5.005000|u reg_node|5.005000||Viu regnode_guts|5.021005||Viu reg_numbered_buff_fetch|5.009005||cViu reg_numbered_buff_length|5.009005||cViu reg_numbered_buff_store|5.009005||cViu regpiece|5.005000||Viu regprop|5.003007||Viu reg_qr_package|5.009005||cViu regrepeat|5.005000||Viu reg_scan_name|5.009005||Viu reg_skipcomment|5.009005||nViu regtail|5.005000||Viu regtail_study|5.009004||Viu reg_temp_copy|5.009005||cViu regtry|5.005000||Viu re_indentf|5.023009||vViu re_intuit_start|5.006000||cVu re_intuit_string|5.006000||cVu Renew|5.003007|5.003007| Renewc|5.003007|5.003007| re_op_compile|5.017001||Viu repeatcpy|5.003007|5.003007|nu REPLACEMENT_CHARACTER_UTF8|5.025005|5.003007|p report_evil_fh|5.006001||Viu report_redefined_cv|5.015006||Viu report_uninit|5.006000||cVi report_wrongway_fh|5.013009||Viu re_printf|5.023009||vViu require_pv|5.006000|5.006000| require_tie_mod|5.009005||Viu RESTORE_ERRNO|||i RESTORE_LC_NUMERIC|5.021010|5.021010| restore_magic|5.009003||Viu restore_switched_locale|5.027009||Viu RETVAL|5.003007|5.003007|V rninstr|5.003007|5.003007|n rpeep|5.013005||Viu rsignal|5.004000|5.004000| rsignal_restore|5.004000||Viu rsignal_save|5.004000||Viu rsignal_state|5.004000|5.004000|u run_body|5.006000||Viu runops_debug|5.005000|5.005000|u runops_standard|5.005000|5.005000|u run_user_filter|5.009003||Viu rv2cv_op_cv|5.013006|5.013006| RV2CVOPCV_MARK_EARLY|5.013006|5.013006| RV2CVOPCV_RETURN_NAME_GV|5.013006|5.013006| rvpv_dup|5.007003|5.007003|u rxres_free|5.004000||Viu rxres_restore|5.004000||Viu rxres_save|5.004000||Viu Safefree|5.003007|5.003007| safesyscalloc|5.006000|5.006000|nu safesysfree|5.006000|5.006000|nu safesysmalloc|5.006000|5.006000|nu safesysrealloc|5.006000|5.006000|nu same_dirent|5.003007||Viu SANE_ERRSV|5.031003|5.031003| save_adelete|5.011000|5.011000|u save_aelem|5.004005|5.004005|u save_aelem_flags|5.011000|5.011000|u save_alloc|5.006000|5.006000|u save_aptr|5.003007|5.003007| save_ary|5.003007|5.003007| save_bool|5.008001|5.008001|u save_clearsv|5.003007|5.003007|u SAVECLEARSV|||i SAVECOMPPAD|||i SAVE_DEFSV|5.004005|5.003007|poVu save_delete|5.003007|5.003007|u save_destructor|5.006000|5.006000|u save_destructor_x|5.006000|5.006000|u SAVE_ERRNO|||i save_freeop|5.010001|5.010001|u save_freepv|5.003007|5.003007|u save_freesv|5.003007|5.003007|u save_generic_pvref|5.006001|5.006001|u save_generic_svref|5.005003|5.005003|u save_gp|5.004000|5.004000| save_hash|5.003007|5.003007| save_hdelete|5.011000|5.011000|u save_hek_flags|5.008000||nViu save_helem|5.004005|5.004005|u save_helem_flags|5.011000|5.011000|u save_hints|5.010001|5.010001|u save_hptr|5.003007|5.003007| save_I16|5.004000|5.004000|u save_I32|5.003007|5.003007|u save_I8|5.006000|5.006000|u save_int|5.003007|5.003007|u save_item|5.003007|5.003007| save_iv|5.005000|5.005000|u save_lines|5.005000||Viu save_list|5.003007|5.003007|d save_long|5.003007|5.003007|du save_magic_flags|5.019002||Viu save_mortalizesv|5.007001|5.007001|u save_nogv|5.003007|5.003007|du save_op|5.010001|5.010001|u save_padsv_and_mortalize|5.010001|5.010001|u SAVEPADSV|||i save_pptr|5.003007|5.003007|u save_pushi32ptr|5.010001|5.010001|u save_pushptr|5.010001|5.010001|u save_pushptri32ptr|5.010001||Viu save_pushptrptr|5.010001|5.010001|u savepv|5.003007|5.003007| savepvn|5.003007|5.003007| savepvs|5.009003|5.009003| save_re_context|5.006000|5.006000|u save_scalar|5.003007|5.003007| save_scalar_at|5.005000||Viu save_set_svflags|5.009000|5.009000|u savesharedpv|5.007003|5.007003| savesharedpvn|5.009005|5.009005| save_shared_pvref|5.007003|5.007003|u savesharedpvs|5.013006|5.013006| savesharedsvpv|5.013006|5.013006| save_sptr|5.003007|5.003007|u savestack_grow|5.003007|5.003007|u savestack_grow_cnt|5.008001|5.008001|u save_strlen|5.019004||cViu savesvpv|5.009002|5.009002| save_svref|5.003007|5.003007| SAVETMPS|5.003007|5.003007| savetmps|5.023008|5.023008|xu save_to_buffer|5.027004||nViu save_vptr|5.006000|5.006000|u sawparens|5.003007||Viu scalar|5.003007||Viu scalarboolean|5.005000||Viu scalarkids|5.003007||Viu scalar_mod_type|5.006000||nViu scalarseq|5.003007||Viu scalarvoid|5.003007||Viu scan_bin|5.006000|5.006000| scan_commit|5.005000||Viu scan_const|5.003007||Viu scan_formline|5.003007||Viu scan_heredoc|5.003007||Viu scan_hex|5.006000|5.003007| scan_ident|5.003007||Viu scan_inputsymbol|5.003007||Viu scan_num|5.007001|5.007001|u scan_oct|5.006000|5.003007| scan_pat|5.003007||Viu scan_str|5.003007||xcViu scan_subst|5.003007||Viu scan_trans|5.003007||Viu scan_version|5.009001|5.009001| scan_vstring|5.009005|5.009005|u scan_word|5.003007||xcViu search_const|5.010001||Viu seed|5.008001|5.008001|u sequence_num|5.009003||Viu set_ANYOF_arg|5.019005||Viu set_caret_X|5.019006||Viu set_context|5.006000|5.006000|nu setdefout|5.003007|5.003007| SETERRNO|||i setfd_cloexec|5.027008||nViu setfd_cloexec_for_nonsysfd|5.027008||Viu setfd_cloexec_or_inhexec_by_sysfdness|5.027008||Viu setfd_inhexec|5.027008||nViu setfd_inhexec_for_sysfd|5.027008||Viu setlocale_debug_string|5.027002||nViu set_numeric_radix|5.006000||Viu set_numeric_standard|5.006000||cViu set_numeric_underlying|5.027006||cViu set_padlist|5.021006||ncViu set_regex_pv|5.029004||Viu _setup_canned_invlist|5.019008||cViu share_hek|5.004000|5.004000|u share_hek_flags|5.008000||Viu SHORTSIZE|5.004000|5.004000| should_warn_nl|5.021001||nViu si_dup|5.007003|5.007003|u sighandler1|||nViu sighandler3|||nViu sighandler|5.003007||nViu simplify_sort|5.006000||Viu SITELIB|5.003007|5.003007| skipspace_flags|5.019002||xcViu skip_to_be_ignored_text|5.023004||Viu Slab_Alloc|5.006000||cViu Slab_Free|5.007003||cViu Slab_to_ro|5.017002||Viu Slab_to_rw|5.009005||Viu softref2xv|||iu sortcv|5.009003||Viu sortcv_stacked|5.009003||Viu sortcv_xsub|5.009003||Viu sortsv|5.007003|5.007003| sortsv_flags|5.009003|5.009003| SP|5.003007|5.003007| space_join_names_mortal|5.009004||Viu SPAGAIN|5.003007|5.003007| ssc_add_range|5.019005||Viu ssc_and|5.019005||Viu ssc_anything|5.019005||Viu ssc_clear_locale|5.019005||nViu ssc_cp_and|5.019005||Viu ssc_finalize|5.019005||Viu ssc_init|5.019005||Viu ssc_intersection|5.019005||Viu ssc_is_anything|5.019005||nViu ssc_is_cp_posixl_init|5.019005||nViu ssc_or|5.019005||Viu ssc_union|5.019005||Viu ss_dup|5.007003|5.007003|u ST|5.003007|5.003007| stack_grow|5.003007|5.003007|u START_EXTERN_C|5.005000|5.003007|poVu start_glob|||xi START_MY_CXT|5.010000|5.010000|p STARTPERL|5.003007|5.003007| start_subparse|5.004000|5.003007|pu STDCHAR|5.003007|5.003007| stdize_locale|5.007001||Viu STMT_END|5.003007|5.003007|pV STMT_START|5.003007|5.003007|pV STORE_LC_NUMERIC_FORCE_TO_UNDERLYING|5.021010|5.021010| STORE_LC_NUMERIC_SET_TO_NEEDED|5.021010|5.021010| STORE_LC_NUMERIC_SET_TO_NEEDED_IN|5.031003|5.031003| strEQ|5.003007|5.003007| strGE|5.003007|5.003007| strGT|5.003007|5.003007| strip_return|5.009003||Viu strLE|5.003007|5.003007| strLT|5.003007|5.003007| strNE|5.003007|5.003007| strnEQ|5.003007|5.003007| strnNE|5.003007|5.003007| Strtod|5.029010|5.029010|n Strtol|5.006000|5.006000|n Strtoul|5.006000|5.006000|n str_to_version|5.006000|5.006000|u StructCopy|5.003007|5.003007|V STR_WITH_LEN|5.009003|5.003007|pV study_chunk|5.005000||Viu sub_crush_depth|5.004000||Viu sublex_done|5.005000||Viu sublex_push|5.005000||Viu sublex_start|5.005000||Viu sv_2bool|5.003007|5.003007| sv_2bool_flags|5.013006|5.013006| sv_2cv|5.003007|5.003007| sv_2io|5.003007|5.003007| sv_2iuv_common|5.009004||Viu sv_2iuv_non_preserve|5.007001||Viu sv_2iv|5.003007|5.003007|u sv_2iv_flags|5.009001|5.009001| sv_2mortal|5.003007|5.003007| sv_2num|5.010000||xVi sv_2nv_flags|5.013001|5.013001| sv_2pv|5.003007|5.003007|u sv_2pvbyte|5.006000|5.003007|p sv_2pvbyte_flags|5.031004|5.031004|u sv_2pvbyte_nolen|5.006000|5.003007|p sv_2pv_flags|5.007002|5.003007|p sv_2pv_nolen|5.006000|5.003007|p sv_2pvutf8|5.006000|5.006000| sv_2pvutf8_flags|5.031004|5.031004|u sv_2pvutf8_nolen|5.006000|5.006000| sv_2uv|5.004000|5.003007|pu sv_2uv_flags|5.009001|5.009001| sv_add_arena|5.003007||Vi sv_add_backref|||iu SvAMAGIC_off|5.031004|5.031004|nu SvAMAGIC_on|5.031004|5.031004|nu sv_backoff|5.003007|5.003007|n sv_bless|5.003007|5.003007| sv_buf_to_ro|5.019008||Viu sv_buf_to_rw|5.019008||Viu SV_CATBYTES|5.021005|5.021005| sv_cat_decode|5.008001|5.008001| sv_catpv|5.003007|5.003007| sv_catpvf|5.006000|5.004000|v sv_catpv_flags|5.013006|5.013006| sv_catpvf_mg|5.006000|5.004000|pv sv_catpvf_mg_nocontext|5.006000||pvnVu sv_catpvf_nocontext|5.006000||vnVu sv_catpv_mg|5.004005|5.003007|p sv_catpvn|5.003007|5.003007| sv_catpvn_flags|5.007002|5.007002| sv_catpvn_mg|5.004005|5.003007|p sv_catpvn_nomg|5.007002|5.003007|p sv_catpv_nomg|5.013006|5.013006| sv_catpvs|5.009003|5.003007|p sv_catpvs_flags|5.013006|5.013006| sv_catpvs_mg|5.013006|5.013006| sv_catpvs_nomg|5.013006|5.013006| sv_catsv|5.003007|5.003007| sv_catsv_flags|5.007002|5.007002| sv_catsv_mg|5.004005|5.003007|p sv_catsv_nomg|5.007002|5.003007|p SV_CATUTF8|5.021005|5.021005| sv_chop|5.003007|5.003007| sv_clean_all|5.003007||Vi sv_clean_objs|5.003007||Vi sv_clear|5.003007|5.003007| sv_cmp|5.003007|5.003007| sv_cmp_flags|5.013006|5.013006| sv_cmp_locale|5.004000|5.004000| sv_cmp_locale_flags|5.013006|5.013006| sv_collxfrm||| sv_collxfrm_flags|5.013006|5.013006| SV_CONST_RETURN|5.009003|5.003007|poVu sv_copypv|5.007003|5.007003| sv_copypv_flags|5.017002|5.017002| sv_copypv_nomg|5.017002|5.017002| SV_COW_DROP_PV|5.008001|5.003007|p SV_COW_SHARED_HASH_KEYS|5.009005|5.003007|poVu SvCUR|5.003007|5.003007| SvCUR_set|5.003007|5.003007| sv_dec|5.003007|5.003007| sv_dec_nomg|5.013002|5.013002| sv_del_backref|5.006000||cViu sv_derived_from|5.004000|5.004000| sv_derived_from_pv|5.015004|5.015004| sv_derived_from_pvn|5.015004|5.015004| sv_derived_from_sv|5.015004|5.015004| sv_derived_from_svpvn|5.031006||Viu sv_destroyable|5.010000|5.010000| sv_display|5.021002||Viu sv_does|5.009004|5.009004| sv_does_pv|5.015004|5.015004| sv_does_pvn|5.015004|5.015004| sv_does_sv|5.015004|5.015004| sv_dump|5.003007|5.003007| sv_dup|5.007003|5.007003|u sv_dup_common|5.013002||Viu sv_dup_inc|5.013002|5.013002|u sv_dup_inc_multiple|5.011000||Viu SvEND|5.003007|5.003007| sv_eq|5.003007|5.003007| sv_eq_flags|5.013006|5.013006| sv_exp_grow|5.009003||Viu SVf|5.006000|5.003007|p SVfARG|5.009005|5.003007|p sv_force_normal|5.006000|5.006000| sv_force_normal_flags|5.007001|5.007001| sv_free2|||xciu sv_free|5.003007|5.003007| sv_free_arenas|5.003007||Vi SVf_UTF8|5.006000|5.003007|p SvGAMAGIC|5.006001|5.006001| sv_get_backrefs|5.021008|5.021008|nx SvGETMAGIC|5.004005|5.003007|p sv_gets|5.003007|5.003007| SV_GMAGIC|5.007002|5.003007|p sv_grow|5.003007|5.003007| SvGROW|5.003007|5.003007| SV_HAS_TRAILING_NUL|5.009004|5.003007|p SV_IMMEDIATE_UNREF|5.007001|5.003007|p sv_inc|5.003007|5.003007| sv_i_ncmp|5.009003||Viu sv_inc_nomg|5.013002|5.013002| sv_insert|5.003007|5.003007| sv_insert_flags|5.010001|5.010001| SvIOK|5.003007|5.003007| SvIOK_notUV|5.006000|5.006000| SvIOK_off|5.003007|5.003007| SvIOK_on|5.003007|5.003007| SvIOK_only|5.003007|5.003007| SvIOK_only_UV|5.006000|5.006000| SvIOKp|5.003007|5.003007| SvIOK_UV|5.006000|5.006000| sv_isa|5.003007|5.003007| sv_isa_sv|||x SvIsCOW|5.008003|5.008003| SvIsCOW_shared_hash|5.008003|5.008003| sv_isobject|5.003007|5.003007| SvIV|5.003007|5.003007| sv_iv|5.005000|5.005000|d SvIV_nomg|5.009001|5.003007|p SvIV_set|5.003007|5.003007| SvIVX|5.003007|5.003007| SvIVx|5.003007|5.003007| sv_kill_backrefs|||xiu sv_len|5.003007|5.003007| SvLEN|5.003007|5.003007| SvLEN_set|5.003007|5.003007| sv_len_utf8|5.006000|5.006000|p sv_len_utf8_nomg|5.017004||pVu SvLOCK|5.007003|5.007003| sv_magic|5.003007|5.003007| sv_magicext|5.007003|5.007003| sv_magicext_mglob|5.019002||cViu sv_magic_portable||5.004000|pou SvMAGIC_set|5.009003|5.003007|p sv_mortalcopy|5.003007|5.003007| sv_mortalcopy_flags|5.017005|5.003007|p SV_MUTABLE_RETURN|5.009003|5.003007|poVu sv_ncmp|5.009003||Viu sv_newmortal|5.003007|5.003007| sv_newref|5.003007|5.003007| SvNIOK|5.003007|5.003007| SvNIOK_off|5.003007|5.003007| SvNIOKp|5.003007|5.003007| SvNOK|5.003007|5.003007| SvNOK_off|5.003007|5.003007| SvNOK_on|5.003007|5.003007| SvNOK_only|5.003007|5.003007| SvNOKp|5.003007|5.003007| sv_nolocking|5.007003|5.007003|d sv_nosharing|5.007003|5.007003| SV_NOSTEAL|5.009002|5.003007|p sv_nounlocking|5.007003|5.007003|d SvNV|5.006000|5.003007| sv_nv|5.006000|5.005000|d SvNV_nomg|5.013002|5.003007|p SvNV_set|5.006000|5.003007| SvNVX|5.006000|5.003007| SvNVx|5.006000|5.003007| SvOK|5.003007|5.003007| sv_only_taint_gmagic|5.021010||nViu SvOOK|5.003007|5.003007| SvOOK_offset|5.011000|5.011000| sv_or_pv_pos_u2b|5.019004||Viu sv_peek|5.005000|5.005000|u SvPOK|5.003007|5.003007| SvPOK_off|5.003007|5.003007| SvPOK_on|5.003007|5.003007| SvPOK_only|5.003007|5.003007| SvPOK_only_UTF8|5.006000|5.006000| SvPOKp|5.003007|5.003007| sv_pos_b2u|5.006000|5.006000| sv_pos_b2u_flags|5.019003|5.019003| sv_pos_b2u_midway|5.009004||Viu sv_pos_u2b|5.006000|5.006000| sv_pos_u2b_cached|5.009004||Viu sv_pos_u2b_flags|5.011005|5.011005| sv_pos_u2b_forwards|5.009004||nViu sv_pos_u2b_midway|5.009004||nViu SvPV|5.003007|5.003007| sv_pv|5.006000|5.006000| SvPVbyte|5.006000|5.003007|p sv_pvbyte|5.006000|5.006000| SvPVbyte_force|5.009002|5.009002| sv_pvbyten|5.006000|5.006000|d sv_pvbyten_force|5.006000|5.006000| SvPVbyte_nolen|5.006000|5.006000| SvPVbyte_nomg|5.031004|5.031004| SvPVbyte_or_null|5.031004|5.031004| SvPVbyte_or_null_nomg|5.031004|5.031004| SvPVbytex|5.006000|5.006000| SvPVbytex_force|5.006000|5.006000| SvPVCLEAR|5.025006|5.025006| SvPV_const|5.009003||pVu SvPV_flags|5.007002||pVu SvPV_flags_const|5.009003||pVu SvPV_flags_const_nolen|5.009003||pVu SvPV_flags_mutable|5.009003||pVu SvPV_force|5.003007|5.003007|p SvPV_force_flags|5.007002||pVu SvPV_force_flags_mutable|5.009003||pVu SvPV_force_flags_nolen|5.009003||pVu SvPV_force_mutable|5.009003||pVu SvPV_force_nolen|5.009003||pVu SvPV_force_nomg|5.007002|5.003007|p SvPV_force_nomg_nolen|5.009003||pVu SvPV_mutable|5.009003||pVu sv_pvn|5.005000|5.005000|d sv_pvn_force|5.003007|5.003007| sv_pvn_force_flags|5.007002|5.003007|p sv_pvn_nomg|5.007003|5.005000|pdu SvPV_nolen|5.006000|5.003007|p SvPV_nolen_const|5.009003||pVu SvPV_nomg|5.007002|5.003007|p SvPV_nomg_const|5.009003||pVu SvPV_nomg_const_nolen|5.009003||pVu SvPV_nomg_nolen|5.013007|5.003007|p SvPV_renew|5.009003||pVu SvPV_set|5.003007|5.003007| sv_pvutf8|5.006000|5.006000| SvPVutf8|5.006000|5.006000| SvPVutf8_force|5.006000|5.006000| sv_pvutf8n|5.006000|5.006000|d sv_pvutf8n_force|5.006000|5.006000| SvPVutf8_nolen|5.006000|5.006000| SvPVutf8_nomg|5.031004|5.031004| SvPVutf8_or_null|5.031004|5.031004| SvPVutf8_or_null_nomg|5.031004|5.031004| SvPVutf8x|5.006000|5.006000| SvPVutf8x_force|5.006000|5.006000| SvPVX|5.003007|5.003007| SvPVx|5.003007|5.003007| SvPVX_const|5.009003||pVu SvPVX_mutable|5.009003||pVu SvREADONLY|5.003007|5.003007| SvREADONLY_off|5.003007|5.003007| SvREADONLY_on|5.003007|5.003007| sv_recode_to_utf8|5.007003|5.007003| sv_ref|5.015004|5.015004| SvREFCNT|5.003007|5.003007| SvREFCNT_dec|5.003007|5.003007| SvREFCNT_dec_NN|5.017007|5.017007| SvREFCNT_inc|5.003007|5.003007|pn SvREFCNT_inc_NN|5.009004|5.003007|pn SvREFCNT_inc_simple|5.009004|5.003007|p SvREFCNT_inc_simple_NN|5.009004|5.003007|p SvREFCNT_inc_simple_void|5.009004|5.003007|p SvREFCNT_inc_simple_void_NN|5.009004|5.003007|p SvREFCNT_inc_void|5.009004|5.003007|pn SvREFCNT_inc_void_NN|5.009004|5.003007|p sv_reftype|5.003007|5.003007| sv_replace|5.003007|5.003007| sv_report_used|5.003007|5.003007| sv_reset|5.003007|5.003007| sv_resetpvn|5.017005||Viu SvROK|5.003007|5.003007| SvROK_off|5.003007|5.003007| SvROK_on|5.003007|5.003007| SvRV|5.003007|5.003007| SvRV_set|5.009003|5.003007|p sv_rvunweaken|5.027004|5.027004| sv_rvweaken|5.006000|5.006000| SvRX|5.009005|5.003007|p SvRXOK|5.009005|5.003007|p sv_sethek|5.015004||cViu sv_setiv|5.003007|5.003007| sv_setiv_mg|5.004005|5.003007|p SvSETMAGIC|5.003007|5.003007| SvSetMagicSV|5.004000|5.004000| SvSetMagicSV_nosteal|5.004000|5.004000| sv_setnv|5.006000|5.003007| sv_setnv_mg|5.006000|5.003007|p sv_setpv|5.003007|5.003007| sv_setpv_bufsize|5.025006|5.025006| sv_setpvf|5.006000|5.004000|v sv_setpvf_mg|5.006000|5.004000|pv sv_setpvf_mg_nocontext|5.006000||pvnVu sv_setpvf_nocontext|5.006000||vnVu sv_setpviv|5.008001|5.008001|d sv_setpviv_mg|5.008001|5.008001|d sv_setpv_mg|5.004005|5.003007|p sv_setpvn|5.003007|5.003007| sv_setpvn_mg|5.004005|5.003007|p sv_setpvs|5.009004|5.003007|p sv_setpvs_mg|5.013006|5.013006| sv_setref_iv|5.003007|5.003007| sv_setref_nv|5.006000|5.003007| sv_setref_pv|5.003007|5.003007| sv_setref_pvn|5.003007|5.003007| sv_setref_pvs|5.013006|5.013006| sv_setref_uv|5.007001|5.007001| sv_setsv|5.003007|5.003007| SvSetSV|5.003007|5.003007| sv_setsv_cow|5.009000||xcViu sv_setsv_flags|5.007002|5.003007|p sv_setsv_mg|5.004005|5.003007|p sv_setsv_nomg|5.007002|5.003007|p SvSetSV_nosteal|5.004000|5.004000| sv_set_undef|5.025008|5.025008| sv_setuv|5.004000|5.003007|p sv_setuv_mg|5.004005|5.003007|p SvSHARE|5.007003|5.007003| SvSHARED_HASH|5.009003||pVu SV_SMAGIC|5.009003|5.003007|p SVs_PADSTALE|5.009000|5.009000| SvSTASH|5.003007|5.003007| SvSTASH_set|5.009003|5.003007|p SVs_TEMP|5.003007|5.003007| sv_string_from_errnum|5.027003|5.027003| SvTAINT|5.003007|5.003007| sv_taint|5.004000|5.004000| sv_tainted|5.004000|5.004000| SvTAINTED|5.004000|5.004000| SvTAINTED_off|5.004000|5.004000| SvTAINTED_on|5.004000|5.004000| SvTHINKFIRST|||i SVt_INVLIST|||c SVt_IV|5.003007|5.003007| SVt_NULL|5.003007|5.003007| SVt_NV|5.003007|5.003007| SVt_PV|5.003007|5.003007| SVt_PVAV|5.003007|5.003007| SVt_PVCV|5.003007|5.003007| SVt_PVFM|5.003007|5.003007| SVt_PVGV|5.003007|5.003007| SVt_PVHV|5.003007|5.003007| SVt_PVIO|5.003007|5.003007| SVt_PVIV|5.003007|5.003007| SVt_PVLV|5.003007|5.003007| SVt_PVMG|5.003007|5.003007| SVt_PVNV|5.003007|5.003007| SVt_REGEXP|5.011000|5.011000| SvTRUE|5.003007|5.003007| sv_true|5.005000|5.005000| SvTRUE_nomg|5.013006|5.003007|p SvTRUEx|5.003007|5.003007| SvTYPE|5.003007|5.003007| svtype|5.003007|5.003007|V sv_unglob|5.005000||Viu sv_uni_display|5.007003|5.007003| SvUNLOCK|5.007003|5.007003| sv_unmagic|5.003007|5.003007| sv_unmagicext|5.013008|5.003007|p sv_unref|5.003007|5.003007| sv_unref_flags|5.007001|5.007001| sv_untaint|5.004000|5.004000| SvUOK|5.007001|5.006000|p sv_upgrade|5.003007|5.003007| SvUPGRADE|5.003007|5.003007| sv_usepvn|5.003007|5.003007| sv_usepvn_flags|5.009004|5.009004| sv_usepvn_mg|5.004005|5.003007|p SvUTF8|5.006000|5.003007|p sv_utf8_decode|5.006000|5.006000| sv_utf8_downgrade|5.006000|5.006000| sv_utf8_downgrade_flags|5.031004|5.031004| sv_utf8_downgrade_nomg|5.031004|5.031004| sv_utf8_encode|5.006000|5.006000| SV_UTF8_NO_ENCODING|5.008001|5.003007|poVu SvUTF8_off|5.006000|5.006000| SvUTF8_on|5.006000|5.006000| sv_utf8_upgrade|5.007001|5.007001| sv_utf8_upgrade_flags|5.007002|5.007002| sv_utf8_upgrade_flags_grow|5.011000|5.011000| sv_utf8_upgrade_nomg|5.007002|5.007002| SvUV|5.004000|5.003007|p sv_uv|5.005000|5.003007|pd SvUV_nomg|5.009001|5.003007|p SvUV_set|5.009003|5.003007|p SvUVX|5.004000|5.003007|p SvUVx|5.004000|5.003007|p SvUVXx|5.004000|5.003007|pd sv_vcatpvf|5.006000|5.004000|p sv_vcatpvf_mg|5.006000|5.004000|p sv_vcatpvfn|5.004000|5.004000| sv_vcatpvfn_flags|5.017002|5.017002| SvVOK|5.008001|5.008001| sv_vsetpvf|5.006000|5.004000|p sv_vsetpvf_mg|5.006000|5.004000|p sv_vsetpvfn|5.004000|5.004000| SvVSTRING_mg|5.009004||pVu swallow_bom|5.006001||Viu switch_category_locale_to_template|5.027009||Viu switch_to_global_locale|5.027009|5.003007|pn sync_locale|5.027009|5.003007|pn sys_init3|5.010000|5.010000|nu sys_init|5.010000|5.010000|nu sys_intern_clear|5.006001||Vu sys_intern_dup|5.006000||Vu sys_intern_init|5.006001||Vu sys_term|5.010000|5.010000|nu taint_env|5.003007|5.003007|u taint_proper|5.003007|5.003007|u THIS|5.003007|5.003007|V thread_locale_init|5.027009|5.027009|nxu thread_locale_term|5.027009|5.027009|nxu tied_method|5.013009||vViu tmps_grow_p|5.021005||cViu to_byte_substr|5.008000||Viu toFOLD|5.019001|5.019001| _to_fold_latin1|5.015005||ncViu toFOLD_utf8|5.031005|5.031005| toFOLD_utf8_safe|5.025009|5.006000|p toFOLD_uvchr|5.023009|5.006000|p tokenize_use|5.009003||Viu tokeq|5.005000||Viu tokereport|5.007001||Viu toLOWER|5.003007|5.003007| toLOWER_L1|5.019001|5.019001| to_lower_latin1|5.015005||nViu toLOWER_LC|5.004000|5.004000| toLOWER_utf8|5.031005|5.031005| toLOWER_utf8_safe|5.025009|5.006000|p toLOWER_uvchr|5.023009|5.006000|p too_few_arguments_pv|5.016000||Viu too_many_arguments_pv|5.016000||Viu TOPMARK|||ciu toTITLE|5.019001|5.019001| toTITLE_utf8|5.031005|5.031005| toTITLE_utf8_safe|5.025009|5.006000|p toTITLE_uvchr|5.023009|5.006000|p to_uni_fold|5.031004||cVu _to_uni_fold_flags|5.014000||cVu to_uni_lower|5.006000||cVu to_uni_title|5.006000||cVu to_uni_upper|5.006000||cVu toUPPER|5.003007|5.003007| _to_upper_title_latin1|5.015005||Viu toUPPER_utf8|5.031005|5.031005| toUPPER_utf8_safe|5.025009|5.006000|p toUPPER_uvchr|5.023009|5.006000|p _to_utf8_case|5.023006||Viu _to_utf8_fold_flags|5.014000||cVu _to_utf8_lower_flags|5.015006||cVu to_utf8_substr|5.008000||Viu _to_utf8_title_flags|5.015006||cVu _to_utf8_upper_flags|5.015006||cVu translate_substr_offsets|5.015006||nViu traverse_op_tree|5.029008||Vi try_amagic_bin|||ciu try_amagic_un|||ciu turkic_fc|5.029008||Viu turkic_lc|5.029008||Viu turkic_uc|5.029008||Viu U16SIZE|5.006000|5.006000| U16TYPE|5.006000|5.006000| U32SIZE|5.006000|5.006000| U32TYPE|5.006000|5.006000| U8SIZE|5.006000|5.006000| U8TYPE|5.006000|5.006000| uiv_2buf|5.009003||nViu UNDERBAR|5.009002|5.003007|p unexpected_non_continuation_text|5.025006||Viu UNICODE_REPLACEMENT|5.007001|5.003007|p UNI_TO_NATIVE|5.007001|5.003007|p UNLIKELY|5.009004|5.003007|p unlnk|5.003007||Vu unpack_rec|5.008001||Viu unpack_str|5.007003|5.007003|d unpackstring|5.008001|5.008001| unreferenced_to_tmp_stack|5.013002||Viu unshare_hek|5.004000||Viu unshare_hek_or_pvn|5.008000||Viu unsharepvn|5.003007|5.003007|u unwind_handler_stack|5.009003||Viu update_debugger_info|5.009005||Viu upg_version|5.009005|5.009005| usage|5.005000||Viu utf16_textfilter|5.011001||Viu utf16_to_utf8|5.006000||cViu utf16_to_utf8_reversed|5.006000||cViu UTF8_CHECK_ONLY|5.007001|5.007001| UTF8_CHK_SKIP|5.031006|5.006000|p UTF8_DISALLOW_ILLEGAL_C9_INTERCHANGE|5.025005|5.025005| UTF8_DISALLOW_ILLEGAL_INTERCHANGE|5.013009|5.013009| UTF8_DISALLOW_NONCHAR|5.013009|5.013009| UTF8_DISALLOW_PERL_EXTENDED|5.027002|5.027002| UTF8_DISALLOW_SUPER|5.013009|5.013009| UTF8_DISALLOW_SURROGATE|5.013009|5.013009| utf8_distance|5.006000|5.006000| UTF8f|5.019001|5.003007|p UTF8fARG|5.019002|5.003007|p utf8_hop|5.006000|5.006000|n utf8_hop_back|5.025007|5.025007|n utf8_hop_forward|5.025007|5.025007|n utf8_hop_safe|5.025007|5.025007|n UTF8_IS_INVARIANT|5.007001|5.003007|p UTF8_IS_NONCHAR|5.023002|5.023002| UTF8_IS_SUPER|5.023002|5.023002| UTF8_IS_SURROGATE|5.023002|5.023002| utf8_length|5.007001|5.007001| UTF8_MAXBYTES|5.009002|5.006000|p UTF8_MAXBYTES_CASE|5.009002|5.003007|p utf8_mg_len_cache_update|5.013003||Viu utf8_mg_pos_cache_update|5.009004||Viu utf8n_to_uvchr|5.007001|5.007001|n utf8n_to_uvchr_error|5.025006|5.025006|n utf8n_to_uvchr_msgs|5.027009|5.027009|nx _utf8n_to_uvchr_msgs_helper|5.029001||ncVu utf8n_to_uvuni|5.007001||cV UTF8_SAFE_SKIP|5.029009|5.006000|p UTF8SKIP|5.006000|5.006000| UTF8_SKIP|5.023002|5.006000|p utf8_to_bytes|5.006001|5.006001|x utf8_to_uvchr|5.007001|5.006001|pd utf8_to_uvchr_buf|5.015009|5.006001|p utf8_to_uvchr_buf_helper|5.031004||cVu utf8_to_uvuni|5.007001||dcV utf8_to_uvuni_buf|5.015009||dcV UTF8_WARN_ILLEGAL_C9_INTERCHANGE|5.025005|5.025005| UTF8_WARN_ILLEGAL_INTERCHANGE|5.013009|5.013009| UTF8_WARN_NONCHAR|5.013009|5.013009| UTF8_WARN_PERL_EXTENDED|5.027002|5.027002| UTF8_WARN_SUPER|5.013009|5.013009| UTF8_WARN_SURROGATE|5.013009|5.013009| utilize|5.003007||Viu UVCHR_IS_INVARIANT|5.019004|5.003007|p UVCHR_SKIP|5.022000|5.003007|p uvchr_to_utf8|5.007001|5.007001| uvchr_to_utf8_flags|5.007003|5.007003| uvchr_to_utf8_flags_msgs|5.027009|5.027009|x UVof|5.006000|5.003007|p uvoffuni_to_utf8_flags|||c uvoffuni_to_utf8_flags_msgs|5.027009||cVu UVSIZE|5.006000|5.003007|p UVTYPE|5.006000|5.003007|p UVuf|5.006000|5.003007|p uvuni_to_utf8|5.019004||cVu uvuni_to_utf8_flags|5.007003||cV UVxf|5.006000|5.003007|p UVXf|5.007001|5.007001|p validate_proto|5.019002||xcVi validate_suid|||iu valid_utf8_to_uvchr|5.015009||ncV valid_utf8_to_uvuni|5.015009||dcVu variant_byte_number|5.031004||ncVu variant_under_utf8_count|5.027007||nVi varname|5.009003||Viu vcmp|5.009000|5.009000| vcroak|5.006000|5.006000| vdeb|5.007003|5.007003|u vform|5.006000|5.006000|u visit|5.005000||Viu vivify_defelem|5.004000||cViu vivify_ref|5.004000||Viu vload_module|5.006000|5.003007|pu vmess|5.006000|5.004000|p vnewSVpvf|5.006000|5.004000|pu vnormal|5.009002|5.009002| vnumify|5.009000|5.009000| vstringify|5.009000|5.009000| vverify|5.009003|5.009003| vwarn|5.006000|5.006000| vwarner|5.006000|5.006000|u wait4pid|5.003007||Viu warn|5.006000|5.003007|v WARN_ALL|5.006000|5.003007|p WARN_AMBIGUOUS|5.006000|5.003007|p WARN_ASSERTIONS||5.003007|pou WARN_BAREWORD|5.006000|5.003007|p WARN_CLOSED|5.006000|5.003007|p WARN_CLOSURE|5.006000|5.003007|p WARN_DEBUGGING|5.006000|5.003007|p WARN_DEPRECATED|5.006000|5.003007|p WARN_DIGIT|5.006000|5.003007|p warner|5.006000|5.004000|pvu warner_nocontext|5.006000||vnVu WARN_EXEC|5.006000|5.003007|p WARN_EXITING|5.006000|5.003007|p WARN_EXPERIMENTAL|5.017004|5.017004| WARN_EXPERIMENTAL__ALPHA_ASSERTIONS|5.027009|5.027009| WARN_EXPERIMENTAL__BITWISE|5.021009|5.021009| WARN_EXPERIMENTAL__CONST_ATTR|5.021008|5.021008| WARN_EXPERIMENTAL__DECLARED_REFS|5.025003|5.025003| WARN_EXPERIMENTAL__ISA||| WARN_EXPERIMENTAL__LEXICAL_SUBS|5.017005|5.017005| WARN_EXPERIMENTAL__POSTDEREF|5.019005|5.019005| WARN_EXPERIMENTAL__PRIVATE_USE|5.029009|5.029009| WARN_EXPERIMENTAL__REFALIASING|5.021005|5.021005| WARN_EXPERIMENTAL__REGEX_SETS|5.017008|5.017008| WARN_EXPERIMENTAL__RE_STRICT|5.021008|5.021008| WARN_EXPERIMENTAL__SCRIPT_RUN|5.027008|5.027008| WARN_EXPERIMENTAL__SIGNATURES|5.019009|5.019009| WARN_EXPERIMENTAL__SMARTMATCH|5.017011|5.017011| WARN_EXPERIMENTAL__UNIPROP_WILDCARDS|5.029009|5.029009| WARN_EXPERIMENTAL__VLB|5.029009|5.029009| WARN_EXPERIMENTAL__WIN32_PERLIO|5.021001|5.021001| WARN_GLOB|5.006000|5.003007|p WARN_ILLEGALPROTO|5.011004|5.011004| WARN_IMPRECISION|5.011000|5.011000| WARN_INPLACE|5.006000|5.003007|p WARN_INTERNAL|5.006000|5.003007|p WARN_IO|5.006000|5.003007|p WARN_LAYER|5.008000|5.003007|p WARN_LOCALE|5.021006|5.021006| WARN_MALLOC|5.006000|5.003007|p WARN_MISC|5.006000|5.003007|p WARN_MISSING|5.021002|5.021002| WARN_NEWLINE|5.006000|5.003007|p warn_nocontext|5.006000||pvnVu WARN_NONCHAR|5.013010|5.013010| WARN_NON_UNICODE|5.013010|5.013010| WARN_NUMERIC|5.006000|5.003007|p WARN_ONCE|5.006000|5.003007|p warn_on_first_deprecated_use|5.025009||Viu WARN_OVERFLOW|5.006000|5.003007|p WARN_PACK|5.006000|5.003007|p WARN_PARENTHESIS|5.006000|5.003007|p WARN_PIPE|5.006000|5.003007|p WARN_PORTABLE|5.006000|5.003007|p WARN_PRECEDENCE|5.006000|5.003007|p WARN_PRINTF|5.006000|5.003007|p _warn_problematic_locale|5.021008||ncViu WARN_PROTOTYPE|5.006000|5.003007|p WARN_QW|5.006000|5.003007|p WARN_RECURSION|5.006000|5.003007|p WARN_REDEFINE|5.006000|5.003007|p WARN_REDUNDANT|5.021002|5.021002| WARN_REGEXP|5.006000|5.003007|p WARN_RESERVED|5.006000|5.003007|p WARN_SEMICOLON|5.006000|5.003007|p WARN_SEVERE|5.006000|5.003007|p WARN_SHADOW|5.027007|5.027007| WARN_SIGNAL|5.006000|5.003007|p WARN_SUBSTR|5.006000|5.003007|p WARN_SURROGATE|5.013010|5.013010| warn_sv|5.013001|5.003007|p WARN_SYNTAX|5.006000|5.003007|p WARN_SYSCALLS|5.019004|5.019004| WARN_TAINT|5.006000|5.003007|p WARN_THREADS|5.008000|5.003007|p WARN_UNINITIALIZED|5.006000|5.003007|p WARN_UNOPENED|5.006000|5.003007|p WARN_UNPACK|5.006000|5.003007|p WARN_UNTIE|5.006000|5.003007|p WARN_UTF8|5.006000|5.003007|p WARN_VOID|5.006000|5.003007|p was_lvalue_sub|||ciu watch|5.003007||Viu whichsig|5.003007|5.003007|u whichsig_pv|5.015004|5.015004|u whichsig_pvn|5.015004|5.015004|u whichsig_sv|5.015004|5.015004|u WIDEST_UTYPE|5.015004|5.003007|p win32_croak_not_implemented|5.017006||nViu win32_setlocale|5.027006||Viu WITH_LC_NUMERIC_SET_TO_NEEDED|5.031003|5.031003| WITH_LC_NUMERIC_SET_TO_NEEDED_IN|5.031003|5.031003| with_queued_errors|5.013001||Viu wrap_keyword_plugin|5.027006|5.027006|x wrap_op_checker|5.015008|5.015008| write_to_stderr|5.008001||Viu XCPT_CATCH|5.009002|5.003007|p XCPT_RETHROW|5.009002|5.003007|p XCPT_TRY_END|5.009002|5.003007|p XCPT_TRY_START|5.009002|5.003007|p XopDISABLE|5.013007|5.013007|V XopENABLE|5.013007|5.013007|V XopENTRY|5.013007|5.013007|V XopENTRYCUSTOM|5.019006|5.013007|V XopENTRY_set|5.013007|5.013007|V XopFLAGS|5.013007|5.013007| XPUSHi|5.003007|5.003007| XPUSHmortal|5.009002|5.003007|p XPUSHn|5.006000|5.003007| XPUSHp|5.003007|5.003007| XPUSHs|5.003007|5.003007| XPUSHu|5.004000|5.003007|p XS|5.003007|5.003007|V XS_APIVERSION_BOOTCHECK|5.013004|5.013004| xs_boot_epilog|5.021006||cViu XS_EXTERNAL|5.015002|5.015002|V xs_handshake|||vnciu XS_INTERNAL|5.015002|5.015002|V XSprePUSH|5.006000|5.003007|poVu XSPROTO|5.010000||pVu XSRETURN|5.003007|5.003007|p XSRETURN_EMPTY|5.003007|5.003007| XSRETURN_IV|5.003007|5.003007| XSRETURN_NO|5.003007|5.003007| XSRETURN_NV|5.006000|5.003007| XSRETURN_PV|5.003007|5.003007| XSRETURN_UNDEF|5.003007|5.003007| XSRETURN_UV|5.008001|5.003007|p XSRETURN_YES|5.003007|5.003007| XST_mIV|5.003007|5.003007| XST_mNO|5.003007|5.003007| XST_mNV|5.006000|5.003007| XST_mPV|5.003007|5.003007| XST_mUNDEF|5.003007|5.003007| XST_mUV|5.008001|5.003007|p XST_mYES|5.003007|5.003007| XS_VERSION|5.003007|5.003007| XS_VERSION_BOOTCHECK|5.003007|5.003007| xs_version_bootcheck|||iu yyerror|5.003007||Viu yyerror_pv|5.016000||Viu yyerror_pvn|5.016000||Viu yylex|5.003007||cViu yyparse|5.003007||Viu yyquit|5.025010||Viu yyunlex|5.013005||Viu yywarn|5.003007||Viu Zero|5.003007|5.003007| ZeroD|5.009002|5.003007|p ); if (exists $opt{'list-unsupported'}) { my $f; for $f (sort dictionary_order keys %API) { next if $API{$f}{core_only}; next if $API{$f}{beyond_depr}; next if $API{$f}{inaccessible}; next if $API{$f}{experimental}; next unless $API{$f}{todo}; next if int_parse_version($API{$f}{todo}) <= $int_min_perl; print "$f ", '.'x(40-length($f)), " ", format_version($API{$f}{todo}), "\n"; } exit 0; } # Scan for hints, possible replacement candidates, etc. my(%replace, %need, %hints, %warnings, %depends); my $replace = 0; my($hint, $define, $function); sub find_api { BEGIN { 'warnings'->unimport('uninitialized') if "$]" > '5.006' } my $code = shift; $code =~ s{ / (?: \*[^*]*\*+(?:[^$ccs][^*]*\*+)* / | /[^\r\n]*) | "[^"\\]*(?:\\.[^"\\]*)*" | '[^'\\]*(?:\\.[^'\\]*)*' }{}egsx; grep { exists $API{$_} } $code =~ /(\w+)/mg; } while () { if ($hint) { # Here, we are in the middle of accumulating a hint or warning. my $end_of_hint = 0; # A line containing a comment end marker closes the hint. Remove that # marker for processing below. if (s/\s*$rcce(.*?)\s*$//) { die "Nothing can follow the end of comment in '$_'\n" if length $1 > 0; $end_of_hint = 1; } # Set $h to the hash of which type. my $h = $hint->[0] eq 'Hint' ? \%hints : \%warnings; # Ignore any leading and trailing white space, and an optional star comment # continuation marker, then place the meat of the line into $1 m/^\s*(?:\*\s*)?(.*?)\s*$/; # Add the meat of this line to the hash value of each API element it # applies to for (@{$hint->[1]}) { $h->{$_} ||= ''; # avoid the warning older perls generate $h->{$_} .= "$1\n"; } # If the line had a comment close, we are through with this hint undef $hint if $end_of_hint; next; } # Set up $hint if this is the beginning of a Hint: or Warning: # These are from a multi-line C comment in the file, with the first line # looking like (a space has been inserted because this file can't have C # comment markers in it): # / * Warning: PL_expect, PL_copline, PL_rsfp # # $hint becomes # [ # 'Warning', # [ # 'PL_expect', # 'PL_copline', # 'PL_rsfp', # ], # ] if (m{^\s*$rccs\s+(Hint|Warning):\s+(\w+(?:,?\s+\w+)*)\s*$}) { $hint = [$1, [split /,?\s+/, $2]]; next; } if ($define) { # If in the middle of a definition... # append a continuation line ending with backslash. if ($define->[1] =~ /\\$/) { $define->[1] .= $_; } else { # Otherwise this line ends the definition, make foo depend on bar # (and what bar depends on) if its not one of ppp's own constructs if (exists $API{$define->[0]} && $define->[1] !~ /^DPPP_\(/) { my @n = find_api($define->[1]); push @{$depends{$define->[0]}}, @n if @n } undef $define; } } # For '#define foo bar' or '#define foo(a,b,c) bar', $define becomes a # reference to [ foo, bar ] $define = [$1, $2] if m{^\s*#\s*define\s+(\w+)(?:\([^)]*\))?\s+(.*)}; if ($function) { if (/^}/) { if (exists $API{$function->[0]}) { my @n = find_api($function->[1]); push @{$depends{$function->[0]}}, @n if @n } undef $function; } else { $function->[1] .= $_; } } $function = [$1, ''] if m{^DPPP_\(my_(\w+)\)}; # Set $replace to the number given for lines that look like # / * Replace: \d+ * / # (blanks added to keep real C comments from appearing in this file) # Thus setting it to 1 starts a region where replacements are automatically # done, and setting it to 0 ends that region. $replace = $1 if m{^\s*$rccs\s+Replace:\s+(\d+)\s+$rcce\s*$}; # Add bar => foo to %replace for lines like '#define foo bar in a region # where $replace is non-zero $replace{$2} = $1 if $replace and m{^\s*#\s*define\s+(\w+)(?:\([^)]*\))?\s+(\w+)}; # Add bar => foo to %replace for lines like '#define foo bar / * Replace * / # (blanks added to keep real C comments from appearing in this file) $replace{$2} = $1 if m{^\s*#\s*define\s+(\w+)(?:\([^)]*\))?\s+(\w+).*$rccs\s+Replace\s+$rcce}; # Add foo => bar to %replace for lines like / * Replace foo with bar * / # (blanks added to keep real C comments from appearing in this file) $replace{$1} = $2 if m{^\s*$rccs\s+Replace (\w+) with (\w+)\s+$rcce\s*$}; # For lines like / * foo, bar depends on baz, bat * / # create a list of the elements on the rhs, and make that list apply to each # element in the lhs, which becomes a key in \%depends. # (blanks added to keep real C comments from appearing in this file) if (m{^\s*$rccs\s+(\w+(\s*,\s*\w+)*)\s+depends\s+on\s+(\w+(\s*,\s*\w+)*)\s+$rcce\s*$}) { my @deps = map { s/\s+//g; $_ } split /,/, $3; my $d; for $d (map { s/\s+//g; $_ } split /,/, $1) { push @{$depends{$d}}, @deps; } } $need{$1} = 1 if m{^#if\s+defined\(NEED_(\w+)(?:_GLOBAL)?\)}; } for (values %depends) { my %seen; $_ = [sort dictionary_order grep !$seen{$_}++, @$_]; } if (exists $opt{'api-info'}) { my $f; my $count = 0; my $match = $opt{'api-info'} =~ m!^/(.*)/$! ? $1 : "^\Q$opt{'api-info'}\E\$"; for $f (sort dictionary_order keys %API) { next unless $f =~ /$match/; print "\n=== $f ===\n"; my $info = 0; my $base; $base = int_parse_version($API{$f}{base}) if $API{$f}{base}; my $todo; $todo = int_parse_version($API{$f}{todo}) if $API{$f}{todo}; # Output information if it is generally publicly usable if ($base && ! $API{$f}{inaccessible} && ! $API{$f}{core_only}) { my $with_or= ""; if ( $base <= $int_min_perl || ( (! $API{$f}{provided} && ! $todo) || ($todo && $todo >= $base))) { $with_or= " with or"; } print "\nSupported at least since perl-", format_version($base), ",$with_or without $ppport."; if ($API{$f}{unverified}) { print "\nThis information is based on inspection of the source code", " and has not been\n", "verified by successful compilation."; } print "\n"; $info++; } if ($API{$f}{provided} || $todo) { print "\nThis is only supported by $ppport, and NOT by perl versions going forward.\n" unless $base; if ($todo) { if (! $base || $todo < $base) { my $additionally = ""; $additionally .= " additionally" if $base; print "$ppport$additionally provides support at least back to perl-", format_version($todo), ".\n"; } } elsif (! $base || $base > $int_min_perl) { if (exists $depends{$f}) { my $max = 0; for (@{$depends{$f}}) { $max = int_parse_version($API{$_}{todo}) if $API{$_}{todo} && $API{$_}{todo} > $max; # XXX What to assume unspecified values are? This effectively makes them MIN_PERL } $todo = $max if $max; } print "\n$ppport provides support for this, but ironically, does not", " currently know,\n", "for this report, the minimum version it supports for this"; if ($API{$f}{undocumented}) { print " and many things\n", "it provides that are implemented as macros and aren't", " documented. You can\n", "help by submitting a documentation patch"; } print ".\n"; if ($todo) { if ($todo <= $int_min_perl) { print "It may very well be supported all the way back to ", format_version(5.003_07), ".\n"; } else { print "But given the things $f depends on, it's a good", " guess that it isn't\n", "supported prior to ", format_version($todo), ".\n"; } } } } if ($API{$f}{provided}) { print "Support needs to be explicitly requested by #define NEED_$f\n", "(or #define NEED_${f}_GLOBAL).\n" if exists $need{$f}; $info++; } if ($base || ! $API{$f}{ppport_fnc}) { my $email = "Send email to perl5-porters\@perl.org if you need to have this functionality.\n"; if ($API{$f}{inaccessible}) { print "\nThis is not part of the public API, and may not even be accessible to XS code.\n"; $info++; } elsif ($API{$f}{core_only}) { print "\nThis is not part of the public API, and should not be used by XS code.\n"; $info++; } elsif ($API{$f}{deprecated}) { print "\nThis is deprecated and should not be used. Convert existing uses.\n"; $info++; } elsif ($API{$f}{experimental}) { print "\nThe API for this is unstable and should not be used by XS code.\n", $email; $info++; } elsif ($API{$f}{undocumented}) { print "\nSince this is undocumented, the API should be considered unstable.\n"; if ($API{$f}{provided}) { print "Consider bringing this up on the list: perl5-porters\@perl.org.\n"; } else { print "It may be that this is not intended for XS use, or it may just be\n", "that no one has gotten around to documenting it.\n", $email; } $info++; } unless ($info) { print "No portability information available. Check your spelling; or", " this could be\na bug in Devel::PPPort. To report an issue:\n", "https://github.com/Dual-Life/Devel-PPPort/issues/new\n"; } } print "\nDepends on: ", join(', ', @{$depends{$f}}), ".\n" if exists $depends{$f}; if (exists $hints{$f} || exists $warnings{$f}) { print "\n$hints{$f}" if exists $hints{$f}; print "\nWARNING:\n$warnings{$f}" if exists $warnings{$f}; $info++; } $count++; } $count or print "\nFound no API matching '$opt{'api-info'}'."; print "\n"; exit 0; } if (exists $opt{'list-provided'}) { my $f; for $f (sort dictionary_order keys %API) { next unless $API{$f}{provided}; my @flags; push @flags, 'explicit' if exists $need{$f}; push @flags, 'depend' if exists $depends{$f}; push @flags, 'hint' if exists $hints{$f}; push @flags, 'warning' if exists $warnings{$f}; my $flags = @flags ? ' ['.join(', ', @flags).']' : ''; print "$f$flags\n"; } exit 0; } my @files; my @srcext = qw( .xs .c .h .cc .cpp -c.inc -xs.inc ); my $srcext = join '|', map { quotemeta $_ } @srcext; if (@ARGV) { my %seen; for (@ARGV) { if (-e) { if (-f) { push @files, $_ unless $seen{$_}++; } else { warn "'$_' is not a file.\n" } } else { my @new = grep { -f } glob $_ or warn "'$_' does not exist.\n"; push @files, grep { !$seen{$_}++ } @new; } } } else { eval { require File::Find; File::Find::find(sub { $File::Find::name =~ /($srcext)$/i and push @files, $File::Find::name; }, '.'); }; if ($@) { @files = map { glob "*$_" } @srcext; } } if (!@ARGV || $opt{filter}) { my(@in, @out); my %xsc = map { /(.*)\.xs$/ ? ("$1.c" => 1, "$1.cc" => 1) : () } @files; for (@files) { my $out = exists $xsc{$_} || /\b\Q$ppport\E$/i || !/($srcext)$/i; push @{ $out ? \@out : \@in }, $_; } if (@ARGV && @out) { warning("Skipping the following files (use --nofilter to avoid this):\n| ", join "\n| ", @out); } @files = @in; } die "No input files given!\n" unless @files; my(%files, %global, %revreplace); %revreplace = reverse %replace; my $filename; my $patch_opened = 0; for $filename (@files) { unless (open IN, "<$filename") { warn "Unable to read from $filename: $!\n"; next; } info("Scanning $filename ..."); my $c = do { local $/; }; close IN; my %file = (orig => $c, changes => 0); # Temporarily remove C/XS comments and strings from the code my @ccom; $c =~ s{ ( ^$HS*\#$HS*include\b[^\r\n]+\b(?:\Q$ppport\E|XSUB\.h)\b[^\r\n]* | ^$HS*\#$HS*(?:define|elif|if(?:def)?)\b[^\r\n]* ) | ( ^$HS*\#[^\r\n]* | "[^"\\]*(?:\\.[^"\\]*)*" | '[^'\\]*(?:\\.[^'\\]*)*' | / (?: \*[^*]*\*+(?:[^$ccs][^*]*\*+)* / | /[^\r\n]* ) ) }{ defined $2 and push @ccom, $2; defined $1 ? $1 : "$ccs$#ccom$cce" }mgsex; $file{ccom} = \@ccom; $file{code} = $c; $file{has_inc_ppport} = $c =~ /^$HS*#$HS*include[^\r\n]+\b\Q$ppport\E\b/m; my $func; for $func (keys %API) { my $match = $func; $match .= "|$revreplace{$func}" if exists $revreplace{$func}; if ($c =~ /\b(?:Perl_)?($match)\b/) { $file{uses_replace}{$1}++ if exists $revreplace{$func} && $1 eq $revreplace{$func}; $file{uses_Perl}{$func}++ if $c =~ /\bPerl_$func\b/; if (exists $API{$func}{provided}) { $file{uses_provided}{$func}++; if ( ! exists $API{$func}{base} || int_parse_version($API{$func}{base}) > $opt{'compat-version'}) { $file{uses}{$func}++; my @deps = rec_depend($func); if (@deps) { $file{uses_deps}{$func} = \@deps; for (@deps) { $file{uses}{$_} = 0 unless exists $file{uses}{$_}; } } for ($func, @deps) { $file{needs}{$_} = 'static' if exists $need{$_}; } } } if ( exists $API{$func}{todo} && int_parse_version($API{$func}{todo}) > $opt{'compat-version'}) { if ($c =~ /\b$func\b/) { $file{uses_todo}{$func}++; } } } } while ($c =~ /^$HS*#$HS*define$HS+(NEED_(\w+?)(_GLOBAL)?)\b/mg) { if (exists $need{$2}) { $file{defined $3 ? 'needed_global' : 'needed_static'}{$2}++; } else { warning("Possibly wrong #define $1 in $filename") } } for (qw(uses needs uses_todo needed_global needed_static)) { for $func (keys %{$file{$_}}) { push @{$global{$_}{$func}}, $filename; } } $files{$filename} = \%file; } # Globally resolve NEED_'s my $need; for $need (keys %{$global{needs}}) { if (@{$global{needs}{$need}} > 1) { my @targets = @{$global{needs}{$need}}; my @t = grep $files{$_}{needed_global}{$need}, @targets; @targets = @t if @t; @t = grep /\.xs$/i, @targets; @targets = @t if @t; my $target = shift @targets; $files{$target}{needs}{$need} = 'global'; for (@{$global{needs}{$need}}) { $files{$_}{needs}{$need} = 'extern' if $_ ne $target; } } } for $filename (@files) { exists $files{$filename} or next; info("=== Analyzing $filename ==="); my %file = %{$files{$filename}}; my $func; my $c = $file{code}; my $warnings = 0; for $func (sort dictionary_order keys %{$file{uses_Perl}}) { if ($API{$func}{varargs}) { unless ($API{$func}{noTHXarg}) { my $changes = ($c =~ s{\b(Perl_$func\s*\(\s*)(?!aTHX_?)(\)|[^\s)]*\))} { $1 . ($2 eq ')' ? 'aTHX' : 'aTHX_ ') . $2 }ge); if ($changes) { warning("Doesn't pass interpreter argument aTHX to Perl_$func"); $file{changes} += $changes; } } } else { warning("Uses Perl_$func instead of $func"); $file{changes} += ($c =~ s{\bPerl_$func(\s*)\((\s*aTHX_?)?\s*} {$func$1(}g); } } for $func (sort dictionary_order keys %{$file{uses_replace}}) { warning("Uses $func instead of $replace{$func}"); $file{changes} += ($c =~ s/\b$func\b/$replace{$func}/g); } for $func (sort dictionary_order keys %{$file{uses_provided}}) { if ($file{uses}{$func}) { if (exists $file{uses_deps}{$func}) { diag("Uses $func, which depends on ", join(', ', @{$file{uses_deps}{$func}})); } else { diag("Uses $func"); } } $warnings += hint($func); } unless ($opt{quiet}) { for $func (sort dictionary_order keys %{$file{uses_todo}}) { next if int_parse_version($API{$func}{todo}) <= $int_min_perl; print "*** WARNING: Uses $func, which may not be portable below perl ", format_version($API{$func}{todo}), ", even with '$ppport'\n"; $warnings++; } } for $func (sort dictionary_order keys %{$file{needed_static}}) { my $message = ''; if (not exists $file{uses}{$func}) { $message = "No need to define NEED_$func if $func is never used"; } elsif (exists $file{needs}{$func} && $file{needs}{$func} ne 'static') { $message = "No need to define NEED_$func when already needed globally"; } if ($message) { diag($message); $file{changes} += ($c =~ s/^$HS*#$HS*define$HS+NEED_$func\b.*$LF//mg); } } for $func (sort dictionary_order keys %{$file{needed_global}}) { my $message = ''; if (not exists $global{uses}{$func}) { $message = "No need to define NEED_${func}_GLOBAL if $func is never used"; } elsif (exists $file{needs}{$func}) { if ($file{needs}{$func} eq 'extern') { $message = "No need to define NEED_${func}_GLOBAL when already needed globally"; } elsif ($file{needs}{$func} eq 'static') { $message = "No need to define NEED_${func}_GLOBAL when only used in this file"; } } if ($message) { diag($message); $file{changes} += ($c =~ s/^$HS*#$HS*define$HS+NEED_${func}_GLOBAL\b.*$LF//mg); } } $file{needs_inc_ppport} = keys %{$file{uses}}; if ($file{needs_inc_ppport}) { my $pp = ''; for $func (sort dictionary_order keys %{$file{needs}}) { my $type = $file{needs}{$func}; next if $type eq 'extern'; my $suffix = $type eq 'global' ? '_GLOBAL' : ''; unless (exists $file{"needed_$type"}{$func}) { if ($type eq 'global') { diag("Files [@{$global{needs}{$func}}] need $func, adding global request"); } else { diag("File needs $func, adding static request"); } $pp .= "#define NEED_$func$suffix\n"; } } if ($pp && ($c =~ s/^(?=$HS*#$HS*define$HS+NEED_\w+)/$pp/m)) { $pp = ''; $file{changes}++; } unless ($file{has_inc_ppport}) { diag("Needs to include '$ppport'"); $pp .= qq(#include "$ppport"\n) } if ($pp) { $file{changes} += ($c =~ s/^($HS*#$HS*define$HS+NEED_\w+.*?)^/$1$pp/ms) || ($c =~ s/^(?=$HS*#$HS*include.*\Q$ppport\E)/$pp/m) || ($c =~ s/^($HS*#$HS*include.*XSUB.*\s*?)^/$1$pp/m) || ($c =~ s/^/$pp/); } } else { if ($file{has_inc_ppport}) { diag("No need to include '$ppport'"); $file{changes} += ($c =~ s/^$HS*?#$HS*include.*\Q$ppport\E.*?$LF//m); } } # put back in our C comments my $ix; my $cppc = 0; my @ccom = @{$file{ccom}}; for $ix (0 .. $#ccom) { if (!$opt{cplusplus} && $ccom[$ix] =~ s!^//!!) { $cppc++; $file{changes} += $c =~ s/$rccs$ix$rcce/$ccs$ccom[$ix] $cce/; } else { $c =~ s/$rccs$ix$rcce/$ccom[$ix]/; } } if ($cppc) { my $s = $cppc != 1 ? 's' : ''; warning("Uses $cppc C++ style comment$s, which is not portable"); } my $s = $warnings != 1 ? 's' : ''; my $warn = $warnings ? " ($warnings warning$s)" : ''; info("Analysis completed$warn"); if ($file{changes}) { if (exists $opt{copy}) { my $newfile = "$filename$opt{copy}"; if (-e $newfile) { error("'$newfile' already exists, refusing to write copy of '$filename'"); } else { local *F; if (open F, ">$newfile") { info("Writing copy of '$filename' with changes to '$newfile'"); print F $c; close F; } else { error("Cannot open '$newfile' for writing: $!"); } } } elsif (exists $opt{patch} || $opt{changes}) { if (exists $opt{patch}) { unless ($patch_opened) { if (open PATCH, ">$opt{patch}") { $patch_opened = 1; } else { error("Cannot open '$opt{patch}' for writing: $!"); delete $opt{patch}; $opt{changes} = 1; goto fallback; } } mydiff(\*PATCH, $filename, $c); } else { fallback: info("Suggested changes:"); mydiff(\*STDOUT, $filename, $c); } } else { my $s = $file{changes} == 1 ? '' : 's'; info("$file{changes} potentially required change$s detected"); } } else { info("Looks good"); } } close PATCH if $patch_opened; exit 0; sub try_use { eval "use @_;"; return $@ eq '' } sub mydiff { local *F = shift; my($file, $str) = @_; my $diff; if (exists $opt{diff}) { $diff = run_diff($opt{diff}, $file, $str); } if (!defined $diff and try_use('Text::Diff')) { $diff = Text::Diff::diff($file, \$str, { STYLE => 'Unified' }); $diff = <
$tmp") { print F $str; close F; if (open F, "$prog $file $tmp |") { while () { s/\Q$tmp\E/$file.patched/; $diff .= $_; } close F; unlink $tmp; return $diff; } unlink $tmp; } else { error("Cannot open '$tmp' for writing: $!"); } return undef; } sub rec_depend { my($func, $seen) = @_; return () unless exists $depends{$func}; $seen = {%{$seen||{}}}; return () if $seen->{$func}++; my %s; grep !$s{$_}++, map { ($_, rec_depend($_, $seen)) } @{$depends{$func}}; } sub info { $opt{quiet} and return; print @_, "\n"; } sub diag { $opt{quiet} and return; $opt{diag} and print @_, "\n"; } sub warning { $opt{quiet} and return; print "*** ", @_, "\n"; } sub error { print "*** ERROR: ", @_, "\n"; } my %given_hints; my %given_warnings; sub hint { $opt{quiet} and return; my $func = shift; my $rv = 0; if (exists $warnings{$func} && !$given_warnings{$func}++) { my $warn = $warnings{$func}; $warn =~ s!^!*** !mg; print "*** WARNING: $func\n", $warn; $rv++; } if ($opt{hints} && exists $hints{$func} && !$given_hints{$func}++) { my $hint = $hints{$func}; $hint =~ s/^/ /mg; print " --- hint for $func ---\n", $hint; } $rv; } sub usage { my($usage) = do { local(@ARGV,$/)=($0); <> } =~ /^=head\d$HS+SYNOPSIS\s*^(.*?)\s*^=/ms; my %M = ( 'I' => '*' ); $usage =~ s/^\s*perl\s+\S+/$^X $0/; $usage =~ s/([A-Z])<([^>]+)>/$M{$1}$2$M{$1}/g; print < }; my($copy) = $self =~ /^=head\d\s+COPYRIGHT\s*^(.*?)^=\w+/ms; $copy =~ s/^(?=\S+)/ /gms; $self =~ s/^$HS+Do NOT edit.*?(?=^-)/$copy/ms; $self =~ s/^SKIP.*(?=^__DATA__)/SKIP if (\@ARGV && \$ARGV[0] eq '--unstrip') { eval { require Devel::PPPort }; \$@ and die "Cannot require Devel::PPPort, please install.\\n"; if (eval \$Devel::PPPort::VERSION < $VERSION) { die "$0 was originally generated with Devel::PPPort $VERSION.\\n" . "Your Devel::PPPort is only version \$Devel::PPPort::VERSION.\\n" . "Please install a newer version, or --unstrip will not work.\\n"; } Devel::PPPort::WriteFile(\$0); exit 0; } print <$0" or die "cannot strip $0: $!\n"; print OUT "$pl$c\n"; exit 0; } __DATA__ */ #ifndef _P_P_PORTABILITY_H_ #define _P_P_PORTABILITY_H_ #ifndef DPPP_NAMESPACE # define DPPP_NAMESPACE DPPP_ #endif #define DPPP_CAT2(x,y) CAT2(x,y) #define DPPP_(name) DPPP_CAT2(DPPP_NAMESPACE, name) #ifndef PERL_REVISION # if !defined(__PATCHLEVEL_H_INCLUDED__) && !(defined(PATCHLEVEL) && defined(SUBVERSION)) # define PERL_PATCHLEVEL_H_IMPLICIT # include # endif # if !(defined(PERL_VERSION) || (defined(SUBVERSION) && defined(PATCHLEVEL))) # include # endif # ifndef PERL_REVISION # define PERL_REVISION (5) /* Replace: 1 */ # define PERL_VERSION PATCHLEVEL # define PERL_SUBVERSION SUBVERSION /* Replace PERL_PATCHLEVEL with PERL_VERSION */ /* Replace: 0 */ # endif #endif #define D_PPP_DEC2BCD(dec) ((((dec)/100)<<8)|((((dec)%100)/10)<<4)|((dec)%10)) #define PERL_BCDVERSION ((D_PPP_DEC2BCD(PERL_REVISION)<<24)|(D_PPP_DEC2BCD(PERL_VERSION)<<12)|D_PPP_DEC2BCD(PERL_SUBVERSION)) /* It is very unlikely that anyone will try to use this with Perl 6 (or greater), but who knows. */ #if PERL_REVISION != 5 # error ppport.h only works with Perl version 5 #endif /* PERL_REVISION != 5 */ #ifndef dTHR # define dTHR dNOOP #endif #ifndef dTHX # define dTHX dNOOP #endif /* Hint: dTHX For pre-5.6.0 thread compatibility, instead use dTHXR, available only through ppport.h */ #ifndef dTHXa # define dTHXa(x) dNOOP #endif #ifndef pTHX # define pTHX void #endif #ifndef pTHX_ # define pTHX_ #endif #ifndef aTHX # define aTHX #endif /* Hint: aTHX For pre-5.6.0 thread compatibility, instead use aTHXR, available only through ppport.h */ #ifndef aTHX_ # define aTHX_ #endif /* Hint: aTHX_ For pre-5.6.0 thread compatibility, instead use aTHXR_, available only through ppport.h */ #if (PERL_BCDVERSION < 0x5006000) # ifdef USE_THREADS # define aTHXR thr # define aTHXR_ thr, # else # define aTHXR # define aTHXR_ # endif # define dTHXR dTHR #else # define aTHXR aTHX # define aTHXR_ aTHX_ # define dTHXR dTHX #endif #ifndef dTHXoa # define dTHXoa(x) dTHXa(x) #endif #ifdef I_LIMITS # include #endif #ifndef PERL_UCHAR_MIN # define PERL_UCHAR_MIN ((unsigned char)0) #endif #ifndef PERL_UCHAR_MAX # ifdef UCHAR_MAX # define PERL_UCHAR_MAX ((unsigned char)UCHAR_MAX) # else # ifdef MAXUCHAR # define PERL_UCHAR_MAX ((unsigned char)MAXUCHAR) # else # define PERL_UCHAR_MAX ((unsigned char)~(unsigned)0) # endif # endif #endif #ifndef PERL_USHORT_MIN # define PERL_USHORT_MIN ((unsigned short)0) #endif #ifndef PERL_USHORT_MAX # ifdef USHORT_MAX # define PERL_USHORT_MAX ((unsigned short)USHORT_MAX) # else # ifdef MAXUSHORT # define PERL_USHORT_MAX ((unsigned short)MAXUSHORT) # else # ifdef USHRT_MAX # define PERL_USHORT_MAX ((unsigned short)USHRT_MAX) # else # define PERL_USHORT_MAX ((unsigned short)~(unsigned)0) # endif # endif # endif #endif #ifndef PERL_SHORT_MAX # ifdef SHORT_MAX # define PERL_SHORT_MAX ((short)SHORT_MAX) # else # ifdef MAXSHORT /* Often used in */ # define PERL_SHORT_MAX ((short)MAXSHORT) # else # ifdef SHRT_MAX # define PERL_SHORT_MAX ((short)SHRT_MAX) # else # define PERL_SHORT_MAX ((short) (PERL_USHORT_MAX >> 1)) # endif # endif # endif #endif #ifndef PERL_SHORT_MIN # ifdef SHORT_MIN # define PERL_SHORT_MIN ((short)SHORT_MIN) # else # ifdef MINSHORT # define PERL_SHORT_MIN ((short)MINSHORT) # else # ifdef SHRT_MIN # define PERL_SHORT_MIN ((short)SHRT_MIN) # else # define PERL_SHORT_MIN (-PERL_SHORT_MAX - ((3 & -1) == 3)) # endif # endif # endif #endif #ifndef PERL_UINT_MAX # ifdef UINT_MAX # define PERL_UINT_MAX ((unsigned int)UINT_MAX) # else # ifdef MAXUINT # define PERL_UINT_MAX ((unsigned int)MAXUINT) # else # define PERL_UINT_MAX (~(unsigned int)0) # endif # endif #endif #ifndef PERL_UINT_MIN # define PERL_UINT_MIN ((unsigned int)0) #endif #ifndef PERL_INT_MAX # ifdef INT_MAX # define PERL_INT_MAX ((int)INT_MAX) # else # ifdef MAXINT /* Often used in */ # define PERL_INT_MAX ((int)MAXINT) # else # define PERL_INT_MAX ((int)(PERL_UINT_MAX >> 1)) # endif # endif #endif #ifndef PERL_INT_MIN # ifdef INT_MIN # define PERL_INT_MIN ((int)INT_MIN) # else # ifdef MININT # define PERL_INT_MIN ((int)MININT) # else # define PERL_INT_MIN (-PERL_INT_MAX - ((3 & -1) == 3)) # endif # endif #endif #ifndef PERL_ULONG_MAX # ifdef ULONG_MAX # define PERL_ULONG_MAX ((unsigned long)ULONG_MAX) # else # ifdef MAXULONG # define PERL_ULONG_MAX ((unsigned long)MAXULONG) # else # define PERL_ULONG_MAX (~(unsigned long)0) # endif # endif #endif #ifndef PERL_ULONG_MIN # define PERL_ULONG_MIN ((unsigned long)0L) #endif #ifndef PERL_LONG_MAX # ifdef LONG_MAX # define PERL_LONG_MAX ((long)LONG_MAX) # else # ifdef MAXLONG # define PERL_LONG_MAX ((long)MAXLONG) # else # define PERL_LONG_MAX ((long) (PERL_ULONG_MAX >> 1)) # endif # endif #endif #ifndef PERL_LONG_MIN # ifdef LONG_MIN # define PERL_LONG_MIN ((long)LONG_MIN) # else # ifdef MINLONG # define PERL_LONG_MIN ((long)MINLONG) # else # define PERL_LONG_MIN (-PERL_LONG_MAX - ((3 & -1) == 3)) # endif # endif #endif #if defined(HAS_QUAD) && (defined(convex) || defined(uts)) # ifndef PERL_UQUAD_MAX # ifdef ULONGLONG_MAX # define PERL_UQUAD_MAX ((unsigned long long)ULONGLONG_MAX) # else # ifdef MAXULONGLONG # define PERL_UQUAD_MAX ((unsigned long long)MAXULONGLONG) # else # define PERL_UQUAD_MAX (~(unsigned long long)0) # endif # endif # endif # ifndef PERL_UQUAD_MIN # define PERL_UQUAD_MIN ((unsigned long long)0L) # endif # ifndef PERL_QUAD_MAX # ifdef LONGLONG_MAX # define PERL_QUAD_MAX ((long long)LONGLONG_MAX) # else # ifdef MAXLONGLONG # define PERL_QUAD_MAX ((long long)MAXLONGLONG) # else # define PERL_QUAD_MAX ((long long) (PERL_UQUAD_MAX >> 1)) # endif # endif # endif # ifndef PERL_QUAD_MIN # ifdef LONGLONG_MIN # define PERL_QUAD_MIN ((long long)LONGLONG_MIN) # else # ifdef MINLONGLONG # define PERL_QUAD_MIN ((long long)MINLONGLONG) # else # define PERL_QUAD_MIN (-PERL_QUAD_MAX - ((3 & -1) == 3)) # endif # endif # endif #endif /* This is based on code from 5.003 perl.h */ #ifdef HAS_QUAD # ifdef cray #ifndef IVTYPE # define IVTYPE int #endif #ifndef IV_MIN # define IV_MIN PERL_INT_MIN #endif #ifndef IV_MAX # define IV_MAX PERL_INT_MAX #endif #ifndef UV_MIN # define UV_MIN PERL_UINT_MIN #endif #ifndef UV_MAX # define UV_MAX PERL_UINT_MAX #endif # ifdef INTSIZE #ifndef IVSIZE # define IVSIZE INTSIZE #endif # endif # else # if defined(convex) || defined(uts) #ifndef IVTYPE # define IVTYPE long long #endif #ifndef IV_MIN # define IV_MIN PERL_QUAD_MIN #endif #ifndef IV_MAX # define IV_MAX PERL_QUAD_MAX #endif #ifndef UV_MIN # define UV_MIN PERL_UQUAD_MIN #endif #ifndef UV_MAX # define UV_MAX PERL_UQUAD_MAX #endif # ifdef LONGLONGSIZE #ifndef IVSIZE # define IVSIZE LONGLONGSIZE #endif # endif # else #ifndef IVTYPE # define IVTYPE long #endif #ifndef IV_MIN # define IV_MIN PERL_LONG_MIN #endif #ifndef IV_MAX # define IV_MAX PERL_LONG_MAX #endif #ifndef UV_MIN # define UV_MIN PERL_ULONG_MIN #endif #ifndef UV_MAX # define UV_MAX PERL_ULONG_MAX #endif # ifdef LONGSIZE #ifndef IVSIZE # define IVSIZE LONGSIZE #endif # endif # endif # endif #ifndef IVSIZE # define IVSIZE 8 #endif #ifndef LONGSIZE # define LONGSIZE 8 #endif #ifndef PERL_QUAD_MIN # define PERL_QUAD_MIN IV_MIN #endif #ifndef PERL_QUAD_MAX # define PERL_QUAD_MAX IV_MAX #endif #ifndef PERL_UQUAD_MIN # define PERL_UQUAD_MIN UV_MIN #endif #ifndef PERL_UQUAD_MAX # define PERL_UQUAD_MAX UV_MAX #endif #else #ifndef IVTYPE # define IVTYPE long #endif #ifndef LONGSIZE # define LONGSIZE 4 #endif #ifndef IV_MIN # define IV_MIN PERL_LONG_MIN #endif #ifndef IV_MAX # define IV_MAX PERL_LONG_MAX #endif #ifndef UV_MIN # define UV_MIN PERL_ULONG_MIN #endif #ifndef UV_MAX # define UV_MAX PERL_ULONG_MAX #endif #endif #ifndef IVSIZE # ifdef LONGSIZE # define IVSIZE LONGSIZE # else # define IVSIZE 4 /* A bold guess, but the best we can make. */ # endif #endif #ifndef UVTYPE # define UVTYPE unsigned IVTYPE #endif #ifndef UVSIZE # define UVSIZE IVSIZE #endif #ifndef PERL_SIGNALS_UNSAFE_FLAG #define PERL_SIGNALS_UNSAFE_FLAG 0x0001 #if (PERL_BCDVERSION < 0x5008000) # define D_PPP_PERL_SIGNALS_INIT PERL_SIGNALS_UNSAFE_FLAG #else # define D_PPP_PERL_SIGNALS_INIT 0 #endif #if defined(NEED_PL_signals) static U32 DPPP_(my_PL_signals) = D_PPP_PERL_SIGNALS_INIT; #elif defined(NEED_PL_signals_GLOBAL) U32 DPPP_(my_PL_signals) = D_PPP_PERL_SIGNALS_INIT; #else extern U32 DPPP_(my_PL_signals); #endif #define PL_signals DPPP_(my_PL_signals) #endif /* Hint: PL_ppaddr * Calling an op via PL_ppaddr requires passing a context argument * for threaded builds. Since the context argument is different for * 5.005 perls, you can use aTHXR (supplied by ppport.h), which will * automatically be defined as the correct argument. */ #if (PERL_BCDVERSION <= 0x5005005) /* Replace: 1 */ # define PL_ppaddr ppaddr # define PL_no_modify no_modify /* Replace: 0 */ #endif #if (PERL_BCDVERSION <= 0x5004005) /* Replace: 1 */ # define PL_DBsignal DBsignal # define PL_DBsingle DBsingle # define PL_DBsub DBsub # define PL_DBtrace DBtrace # define PL_Sv Sv # define PL_Xpv Xpv # define PL_bufend bufend # define PL_bufptr bufptr # define PL_compiling compiling # define PL_copline copline # define PL_curcop curcop # define PL_curstash curstash # define PL_debstash debstash # define PL_defgv defgv # define PL_diehook diehook # define PL_dirty dirty # define PL_dowarn dowarn # define PL_errgv errgv # define PL_error_count error_count # define PL_expect expect # define PL_hexdigit hexdigit # define PL_hints hints # define PL_in_my in_my # define PL_laststatval laststatval # define PL_lex_state lex_state # define PL_lex_stuff lex_stuff # define PL_linestr linestr # define PL_na na # define PL_perl_destruct_level perl_destruct_level # define PL_perldb perldb # define PL_rsfp_filters rsfp_filters # define PL_rsfp rsfp # define PL_stack_base stack_base # define PL_stack_sp stack_sp # define PL_statcache statcache # define PL_stdingv stdingv # define PL_sv_arenaroot sv_arenaroot # define PL_sv_no sv_no # define PL_sv_undef sv_undef # define PL_sv_yes sv_yes # define PL_tainted tainted # define PL_tainting tainting # define PL_tokenbuf tokenbuf # define PL_mess_sv mess_sv /* Replace: 0 */ #endif /* Warning: PL_parser * For perl versions earlier than 5.9.5, this is an always * non-NULL dummy. Also, it cannot be dereferenced. Don't * use it if you can avoid it, and unless you absolutely know * what you're doing. * If you always check that PL_parser is non-NULL, you can * define DPPP_PL_parser_NO_DUMMY to avoid the creation of * a dummy parser structure. */ #if (PERL_BCDVERSION >= 0x5009005) # ifdef DPPP_PL_parser_NO_DUMMY # define D_PPP_my_PL_parser_var(var) ((PL_parser ? PL_parser : \ (croak("panic: PL_parser == NULL in %s:%d", \ __FILE__, __LINE__), (yy_parser *) NULL))->var) # else # ifdef DPPP_PL_parser_NO_DUMMY_WARNING # define D_PPP_parser_dummy_warning(var) # else # define D_PPP_parser_dummy_warning(var) \ warn("warning: dummy PL_" #var " used in %s:%d", __FILE__, __LINE__), # endif # define D_PPP_my_PL_parser_var(var) ((PL_parser ? PL_parser : \ (D_PPP_parser_dummy_warning(var) &DPPP_(dummy_PL_parser)))->var) #if defined(NEED_PL_parser) static yy_parser DPPP_(dummy_PL_parser); #elif defined(NEED_PL_parser_GLOBAL) yy_parser DPPP_(dummy_PL_parser); #else extern yy_parser DPPP_(dummy_PL_parser); #endif # endif /* PL_expect, PL_copline, PL_rsfp, PL_rsfp_filters, PL_linestr, PL_bufptr, PL_bufend, PL_lex_state, PL_lex_stuff, PL_tokenbuf depends on PL_parser */ /* Warning: PL_expect, PL_copline, PL_rsfp, PL_rsfp_filters, PL_linestr, PL_bufptr, PL_bufend, PL_lex_state, PL_lex_stuff, PL_tokenbuf * Do not use this variable unless you know exactly what you're * doing. It is internal to the perl parser and may change or even * be removed in the future. As of perl 5.9.5, you have to check * for (PL_parser != NULL) for this variable to have any effect. * An always non-NULL PL_parser dummy is provided for earlier * perl versions. * If PL_parser is NULL when you try to access this variable, a * dummy is being accessed instead and a warning is issued unless * you define DPPP_PL_parser_NO_DUMMY_WARNING. * If DPPP_PL_parser_NO_DUMMY is defined, the code trying to access * this variable will croak with a panic message. */ # define PL_expect D_PPP_my_PL_parser_var(expect) # define PL_copline D_PPP_my_PL_parser_var(copline) # define PL_rsfp D_PPP_my_PL_parser_var(rsfp) # define PL_rsfp_filters D_PPP_my_PL_parser_var(rsfp_filters) # define PL_linestr D_PPP_my_PL_parser_var(linestr) # define PL_bufptr D_PPP_my_PL_parser_var(bufptr) # define PL_bufend D_PPP_my_PL_parser_var(bufend) # define PL_lex_state D_PPP_my_PL_parser_var(lex_state) # define PL_lex_stuff D_PPP_my_PL_parser_var(lex_stuff) # define PL_tokenbuf D_PPP_my_PL_parser_var(tokenbuf) # define PL_in_my D_PPP_my_PL_parser_var(in_my) # define PL_in_my_stash D_PPP_my_PL_parser_var(in_my_stash) # define PL_error_count D_PPP_my_PL_parser_var(error_count) #else /* ensure that PL_parser != NULL and cannot be dereferenced */ # define PL_parser ((void *) 1) #endif #if (PERL_BCDVERSION <= 0x5003022) # undef start_subparse # if (PERL_BCDVERSION < 0x5003022) #ifndef start_subparse # define start_subparse(a, b) Perl_start_subparse() #endif # else #ifndef start_subparse # define start_subparse(a, b) Perl_start_subparse(b) #endif # endif #if (PERL_BCDVERSION < 0x5003007) foo #endif #endif /* Hint: newCONSTSUB * Returns a CV* as of perl-5.7.1. This return value is not supported * by Devel::PPPort. */ /* newCONSTSUB from IO.xs is in the core starting with 5.004_63 */ #if (PERL_BCDVERSION < 0x5004063) && (PERL_BCDVERSION != 0x5004005) /* And before that, we need to make sure this gets compiled for the functions * that rely on it */ #define NEED_newCONSTSUB #if defined(NEED_newCONSTSUB) static void DPPP_(my_newCONSTSUB)(HV * stash, const char * name, SV * sv); static #else extern void DPPP_(my_newCONSTSUB)(HV * stash, const char * name, SV * sv); #endif #if defined(NEED_newCONSTSUB) || defined(NEED_newCONSTSUB_GLOBAL) #ifdef newCONSTSUB # undef newCONSTSUB #endif #define newCONSTSUB(a,b,c) DPPP_(my_newCONSTSUB)(aTHX_ a,b,c) #define Perl_newCONSTSUB DPPP_(my_newCONSTSUB) /* This is just a trick to avoid a dependency of newCONSTSUB on PL_parser */ /* (There's no PL_parser in perl < 5.005, so this is completely safe) */ #define D_PPP_PL_copline PL_copline void DPPP_(my_newCONSTSUB)(HV *stash, const char *name, SV *sv) { U32 oldhints = PL_hints; HV *old_cop_stash = PL_curcop->cop_stash; HV *old_curstash = PL_curstash; line_t oldline = PL_curcop->cop_line; PL_curcop->cop_line = D_PPP_PL_copline; PL_hints &= ~HINT_BLOCK_SCOPE; if (stash) PL_curstash = PL_curcop->cop_stash = stash; newSUB( start_subparse(FALSE, 0), newSVOP(OP_CONST, 0, newSVpv((char *) name, 0)), newSVOP(OP_CONST, 0, &PL_sv_no), /* SvPV(&PL_sv_no) == "" -- GMB */ newSTATEOP(0, Nullch, newSVOP(OP_CONST, 0, sv)) ); PL_hints = oldhints; PL_curcop->cop_stash = old_cop_stash; PL_curstash = old_curstash; PL_curcop->cop_line = oldline; } #endif #endif #ifndef PERL_MAGIC_sv # define PERL_MAGIC_sv '\0' #endif #ifndef PERL_MAGIC_overload # define PERL_MAGIC_overload 'A' #endif #ifndef PERL_MAGIC_overload_elem # define PERL_MAGIC_overload_elem 'a' #endif #ifndef PERL_MAGIC_overload_table # define PERL_MAGIC_overload_table 'c' #endif #ifndef PERL_MAGIC_bm # define PERL_MAGIC_bm 'B' #endif #ifndef PERL_MAGIC_regdata # define PERL_MAGIC_regdata 'D' #endif #ifndef PERL_MAGIC_regdatum # define PERL_MAGIC_regdatum 'd' #endif #ifndef PERL_MAGIC_env # define PERL_MAGIC_env 'E' #endif #ifndef PERL_MAGIC_envelem # define PERL_MAGIC_envelem 'e' #endif #ifndef PERL_MAGIC_fm # define PERL_MAGIC_fm 'f' #endif #ifndef PERL_MAGIC_regex_global # define PERL_MAGIC_regex_global 'g' #endif #ifndef PERL_MAGIC_isa # define PERL_MAGIC_isa 'I' #endif #ifndef PERL_MAGIC_isaelem # define PERL_MAGIC_isaelem 'i' #endif #ifndef PERL_MAGIC_nkeys # define PERL_MAGIC_nkeys 'k' #endif #ifndef PERL_MAGIC_dbfile # define PERL_MAGIC_dbfile 'L' #endif #ifndef PERL_MAGIC_dbline # define PERL_MAGIC_dbline 'l' #endif #ifndef PERL_MAGIC_mutex # define PERL_MAGIC_mutex 'm' #endif #ifndef PERL_MAGIC_shared # define PERL_MAGIC_shared 'N' #endif #ifndef PERL_MAGIC_shared_scalar # define PERL_MAGIC_shared_scalar 'n' #endif #ifndef PERL_MAGIC_collxfrm # define PERL_MAGIC_collxfrm 'o' #endif #ifndef PERL_MAGIC_tied # define PERL_MAGIC_tied 'P' #endif #ifndef PERL_MAGIC_tiedelem # define PERL_MAGIC_tiedelem 'p' #endif #ifndef PERL_MAGIC_tiedscalar # define PERL_MAGIC_tiedscalar 'q' #endif #ifndef PERL_MAGIC_qr # define PERL_MAGIC_qr 'r' #endif #ifndef PERL_MAGIC_sig # define PERL_MAGIC_sig 'S' #endif #ifndef PERL_MAGIC_sigelem # define PERL_MAGIC_sigelem 's' #endif #ifndef PERL_MAGIC_taint # define PERL_MAGIC_taint 't' #endif #ifndef PERL_MAGIC_uvar # define PERL_MAGIC_uvar 'U' #endif #ifndef PERL_MAGIC_uvar_elem # define PERL_MAGIC_uvar_elem 'u' #endif #ifndef PERL_MAGIC_vstring # define PERL_MAGIC_vstring 'V' #endif #ifndef PERL_MAGIC_vec # define PERL_MAGIC_vec 'v' #endif #ifndef PERL_MAGIC_utf8 # define PERL_MAGIC_utf8 'w' #endif #ifndef PERL_MAGIC_substr # define PERL_MAGIC_substr 'x' #endif #ifndef PERL_MAGIC_defelem # define PERL_MAGIC_defelem 'y' #endif #ifndef PERL_MAGIC_glob # define PERL_MAGIC_glob '*' #endif #ifndef PERL_MAGIC_arylen # define PERL_MAGIC_arylen '#' #endif #ifndef PERL_MAGIC_pos # define PERL_MAGIC_pos '.' #endif #ifndef PERL_MAGIC_backref # define PERL_MAGIC_backref '<' #endif #ifndef PERL_MAGIC_ext # define PERL_MAGIC_ext '~' #endif #ifndef cBOOL # define cBOOL(cbool) ((cbool) ? (bool)1 : (bool)0) #endif #ifndef OpHAS_SIBLING # define OpHAS_SIBLING(o) (cBOOL((o)->op_sibling)) #endif #ifndef OpSIBLING # define OpSIBLING(o) (0 + (o)->op_sibling) #endif #ifndef OpMORESIB_set # define OpMORESIB_set(o, sib) ((o)->op_sibling = (sib)) #endif #ifndef OpLASTSIB_set # define OpLASTSIB_set(o, parent) ((o)->op_sibling = NULL) #endif #ifndef OpMAYBESIB_set # define OpMAYBESIB_set(o, sib, parent) ((o)->op_sibling = (sib)) #endif #ifndef HEf_SVKEY # define HEf_SVKEY -2 #endif #if defined(DEBUGGING) && !defined(__COVERITY__) #ifndef __ASSERT_ # define __ASSERT_(statement) assert(statement), #endif #else #ifndef __ASSERT_ # define __ASSERT_(statement) #endif #endif /* These could become provided if/when they become part of the public API */ #ifndef withinCOUNT # define withinCOUNT(c, l, n) \ (((WIDEST_UTYPE) (((c)) - ((l) | 0))) <= (((WIDEST_UTYPE) ((n) | 0)))) #endif #ifndef inRANGE # define inRANGE(c, l, u) \ ( (sizeof(c) == sizeof(U8)) ? withinCOUNT(((U8) (c)), (l), ((u) - (l))) \ : (sizeof(c) == sizeof(U16)) ? withinCOUNT(((U16) (c)), (l), ((u) - (l))) \ : (sizeof(c) == sizeof(U32)) ? withinCOUNT(((U32) (c)), (l), ((u) - (l))) \ : (withinCOUNT(((WIDEST_UTYPE) (c)), (l), ((u) - (l))))) #endif /* The '| 0' part ensures a compiler error if c is not integer (like e.g., a * pointer) */ #undef FITS_IN_8_BITS /* handy.h version uses a core-only constant */ #ifndef FITS_IN_8_BITS # define FITS_IN_8_BITS(c) ( (sizeof(c) == 1) \ || !(((WIDEST_UTYPE)((c) | 0)) & ~0xFF)) #endif /* Create the macro for "is'macro'_utf8_safe(s, e)". For code points below * 256, it calls the equivalent _L1 macro by converting the UTF-8 to code * point. That is so that it can automatically get the bug fixes done in this * file. */ #define D_PPP_IS_GENERIC_UTF8_SAFE(s, e, macro) \ (((e) - (s)) <= 0 \ ? 0 \ : UTF8_IS_INVARIANT((s)[0]) \ ? is ## macro ## _L1((s)[0]) \ : (((e) - (s)) < UTF8SKIP(s)) \ ? 0 \ : UTF8_IS_DOWNGRADEABLE_START((s)[0]) \ /* The cast in the line below is only to silence warnings */ \ ? is ## macro ## _L1((WIDEST_UTYPE) LATIN1_TO_NATIVE( \ UTF8_ACCUMULATE(NATIVE_UTF8_TO_I8((s)[0]) \ & UTF_START_MASK(2), \ (s)[1]))) \ : is ## macro ## _utf8(s)) /* Create the macro for "is'macro'_LC_utf8_safe(s, e)". For code points below * 256, it calls the equivalent _L1 macro by converting the UTF-8 to code * point. That is so that it can automatically get the bug fixes done in this * file. */ #define D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, macro) \ (((e) - (s)) <= 0 \ ? 0 \ : UTF8_IS_INVARIANT((s)[0]) \ ? is ## macro ## _LC((s)[0]) \ : (((e) - (s)) < UTF8SKIP(s)) \ ? 0 \ : UTF8_IS_DOWNGRADEABLE_START((s)[0]) \ /* The cast in the line below is only to silence warnings */ \ ? is ## macro ## _LC((WIDEST_UTYPE) LATIN1_TO_NATIVE( \ UTF8_ACCUMULATE(NATIVE_UTF8_TO_I8((s)[0]) \ & UTF_START_MASK(2), \ (s)[1]))) \ : is ## macro ## _utf8(s)) /* A few of the early functions are broken. For these and the non-LC case, * machine generated code is substituted. But that code doesn't work for * locales. This is just like the above macro, but at the end, we call the * macro we've generated for the above 255 case, which is correct since locale * isn't involved. This will generate extra code to handle the 0-255 inputs, * but hopefully it will be optimized out by the C compiler. But just in case * it isn't, this macro is only used on the few versions that are broken */ #define D_PPP_IS_GENERIC_LC_UTF8_SAFE_BROKEN(s, e, macro) \ (((e) - (s)) <= 0 \ ? 0 \ : UTF8_IS_INVARIANT((s)[0]) \ ? is ## macro ## _LC((s)[0]) \ : (((e) - (s)) < UTF8SKIP(s)) \ ? 0 \ : UTF8_IS_DOWNGRADEABLE_START((s)[0]) \ /* The cast in the line below is only to silence warnings */ \ ? is ## macro ## _LC((WIDEST_UTYPE) LATIN1_TO_NATIVE( \ UTF8_ACCUMULATE(NATIVE_UTF8_TO_I8((s)[0]) \ & UTF_START_MASK(2), \ (s)[1]))) \ : is ## macro ## _utf8_safe(s, e)) #ifndef SvRX # define SvRX(rv) (SvROK((rv)) ? (SvMAGICAL(SvRV((rv))) ? (mg_find(SvRV((rv)), PERL_MAGIC_qr) ? mg_find(SvRV((rv)), PERL_MAGIC_qr)->mg_obj : NULL) : NULL) : NULL) #endif #ifndef SvRXOK # define SvRXOK(sv) (!!SvRX(sv)) #endif #ifndef PERL_UNUSED_DECL # ifdef HASATTRIBUTE # if (defined(__GNUC__) && defined(__cplusplus)) || defined(__INTEL_COMPILER) # define PERL_UNUSED_DECL # else # define PERL_UNUSED_DECL __attribute__((unused)) # endif # else # define PERL_UNUSED_DECL # endif #endif #ifndef PERL_UNUSED_ARG # if defined(lint) && defined(S_SPLINT_S) /* www.splint.org */ # include # define PERL_UNUSED_ARG(x) NOTE(ARGUNUSED(x)) # else # define PERL_UNUSED_ARG(x) ((void)x) # endif #endif #ifndef PERL_UNUSED_VAR # define PERL_UNUSED_VAR(x) ((void)x) #endif #ifndef PERL_UNUSED_CONTEXT # ifdef USE_ITHREADS # define PERL_UNUSED_CONTEXT PERL_UNUSED_ARG(my_perl) # else # define PERL_UNUSED_CONTEXT # endif #endif #ifndef PERL_UNUSED_RESULT # if defined(__GNUC__) && defined(HASATTRIBUTE_WARN_UNUSED_RESULT) # define PERL_UNUSED_RESULT(v) STMT_START { __typeof__(v) z = (v); (void)sizeof(z); } STMT_END # else # define PERL_UNUSED_RESULT(v) ((void)(v)) # endif #endif #ifndef NOOP # define NOOP /*EMPTY*/(void)0 #endif #ifndef dNOOP # define dNOOP extern int /*@unused@*/ Perl___notused PERL_UNUSED_DECL #endif #ifndef NVTYPE # if defined(USE_LONG_DOUBLE) && defined(HAS_LONG_DOUBLE) # define NVTYPE long double # else # define NVTYPE double # endif typedef NVTYPE NV; #endif #ifndef INT2PTR # if (IVSIZE == PTRSIZE) && (UVSIZE == PTRSIZE) # define PTRV UV # define INT2PTR(any,d) (any)(d) # else # if PTRSIZE == LONGSIZE # define PTRV unsigned long # else # define PTRV unsigned # endif # define INT2PTR(any,d) (any)(PTRV)(d) # endif #endif #ifndef PTR2ul # if PTRSIZE == LONGSIZE # define PTR2ul(p) (unsigned long)(p) # else # define PTR2ul(p) INT2PTR(unsigned long,p) # endif #endif #ifndef PTR2nat # define PTR2nat(p) (PTRV)(p) #endif #ifndef NUM2PTR # define NUM2PTR(any,d) (any)PTR2nat(d) #endif #ifndef PTR2IV # define PTR2IV(p) INT2PTR(IV,p) #endif #ifndef PTR2UV # define PTR2UV(p) INT2PTR(UV,p) #endif #ifndef PTR2NV # define PTR2NV(p) NUM2PTR(NV,p) #endif #undef START_EXTERN_C #undef END_EXTERN_C #undef EXTERN_C #ifdef __cplusplus # define START_EXTERN_C extern "C" { # define END_EXTERN_C } # define EXTERN_C extern "C" #else # define START_EXTERN_C # define END_EXTERN_C # define EXTERN_C extern #endif #if (PERL_BCDVERSION < 0x5004000) || defined(PERL_GCC_PEDANTIC) # ifndef PERL_GCC_BRACE_GROUPS_FORBIDDEN #ifndef PERL_GCC_BRACE_GROUPS_FORBIDDEN # define PERL_GCC_BRACE_GROUPS_FORBIDDEN #endif # endif #endif #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) && !defined(__cplusplus) # ifndef PERL_USE_GCC_BRACE_GROUPS # define PERL_USE_GCC_BRACE_GROUPS # endif #endif #undef STMT_START #undef STMT_END #ifdef PERL_USE_GCC_BRACE_GROUPS # define STMT_START (void)( /* gcc supports ``({ STATEMENTS; })'' */ # define STMT_END ) #else # if defined(VOIDFLAGS) && (VOIDFLAGS) && (defined(sun) || defined(__sun__)) && !defined(__GNUC__) # define STMT_START if (1) # define STMT_END else (void)0 # else # define STMT_START do # define STMT_END while (0) # endif #endif #ifndef boolSV # define boolSV(b) ((b) ? &PL_sv_yes : &PL_sv_no) #endif /* DEFSV appears first in 5.004_56 */ #ifndef DEFSV # define DEFSV GvSV(PL_defgv) #endif #ifndef SAVE_DEFSV # define SAVE_DEFSV SAVESPTR(GvSV(PL_defgv)) #endif #ifndef DEFSV_set # define DEFSV_set(sv) (DEFSV = (sv)) #endif /* Older perls (<=5.003) lack AvFILLp */ #ifndef AvFILLp # define AvFILLp AvFILL #endif #ifndef av_tindex # define av_tindex AvFILL #endif #ifndef av_top_index # define av_top_index AvFILL #endif #ifndef ERRSV # define ERRSV get_sv("@",FALSE) #endif /* Hint: gv_stashpvn * This function's backport doesn't support the length parameter, but * rather ignores it. Portability can only be ensured if the length * parameter is used for speed reasons, but the length can always be * correctly computed from the string argument. */ #ifndef gv_stashpvn # define gv_stashpvn(str,len,create) gv_stashpv(str,create) #endif /* Replace: 1 */ #ifndef get_cv # define get_cv perl_get_cv #endif #ifndef get_sv # define get_sv perl_get_sv #endif #ifndef get_av # define get_av perl_get_av #endif #ifndef get_hv # define get_hv perl_get_hv #endif /* Replace: 0 */ #ifndef dUNDERBAR # define dUNDERBAR dNOOP #endif #ifndef UNDERBAR # define UNDERBAR DEFSV #endif #ifndef dAX # define dAX I32 ax = MARK - PL_stack_base + 1 #endif #ifndef dITEMS # define dITEMS I32 items = SP - MARK #endif #ifndef dXSTARG # define dXSTARG SV * targ = sv_newmortal() #endif #ifndef dAXMARK # define dAXMARK I32 ax = POPMARK; \ register SV ** const mark = PL_stack_base + ax++ #endif #ifndef XSprePUSH # define XSprePUSH (sp = PL_stack_base + ax - 1) #endif #if (PERL_BCDVERSION < 0x5005000) # undef XSRETURN # define XSRETURN(off) \ STMT_START { \ PL_stack_sp = PL_stack_base + ax + ((off) - 1); \ return; \ } STMT_END #endif #ifndef XSPROTO # define XSPROTO(name) void name(pTHX_ CV* cv) #endif #ifndef SVfARG # define SVfARG(p) ((void*)(p)) #endif #ifndef PERL_ABS # define PERL_ABS(x) ((x) < 0 ? -(x) : (x)) #endif #ifndef dVAR # define dVAR dNOOP #endif #ifndef SVf # define SVf "_" #endif #ifndef CPERLscope # define CPERLscope(x) x #endif #ifndef PERL_HASH # define PERL_HASH(hash,str,len) \ STMT_START { \ const char *s_PeRlHaSh = str; \ I32 i_PeRlHaSh = len; \ U32 hash_PeRlHaSh = 0; \ while (i_PeRlHaSh--) \ hash_PeRlHaSh = hash_PeRlHaSh * 33 + *s_PeRlHaSh++; \ (hash) = hash_PeRlHaSh; \ } STMT_END #endif #ifndef PERLIO_FUNCS_DECL # ifdef PERLIO_FUNCS_CONST # define PERLIO_FUNCS_DECL(funcs) const PerlIO_funcs funcs # define PERLIO_FUNCS_CAST(funcs) (PerlIO_funcs*)(funcs) # else # define PERLIO_FUNCS_DECL(funcs) PerlIO_funcs funcs # define PERLIO_FUNCS_CAST(funcs) (funcs) # endif #endif /* provide these typedefs for older perls */ #if (PERL_BCDVERSION < 0x5009003) # ifdef ARGSproto typedef OP* (CPERLscope(*Perl_ppaddr_t))(ARGSproto); # else typedef OP* (CPERLscope(*Perl_ppaddr_t))(pTHX); # endif typedef OP* (CPERLscope(*Perl_check_t)) (pTHX_ OP*); #endif #ifndef WIDEST_UTYPE # ifdef QUADKIND # ifdef U64TYPE # define WIDEST_UTYPE U64TYPE # else # define WIDEST_UTYPE Quad_t # endif # else # define WIDEST_UTYPE U32 # endif #endif /* On versions without NATIVE_TO_ASCII, only ASCII is supported */ #if defined(EBCDIC) && defined(NATIVE_TO_ASCI) #ifndef NATIVE_TO_LATIN1 # define NATIVE_TO_LATIN1(c) NATIVE_TO_ASCII(c) #endif #ifndef LATIN1_TO_NATIVE # define LATIN1_TO_NATIVE(c) ASCII_TO_NATIVE(c) #endif #ifndef NATIVE_TO_UNI # define NATIVE_TO_UNI(c) ((c) > 255 ? (c) : NATIVE_TO_LATIN1(c)) #endif #ifndef UNI_TO_NATIVE # define UNI_TO_NATIVE(c) ((c) > 255 ? (c) : LATIN1_TO_NATIVE(c)) #endif #else #ifndef NATIVE_TO_LATIN1 # define NATIVE_TO_LATIN1(c) (c) #endif #ifndef LATIN1_TO_NATIVE # define LATIN1_TO_NATIVE(c) (c) #endif #ifndef NATIVE_TO_UNI # define NATIVE_TO_UNI(c) (c) #endif #ifndef UNI_TO_NATIVE # define UNI_TO_NATIVE(c) (c) #endif #endif /* Warning: LATIN1_TO_NATIVE, NATIVE_TO_LATIN1 NATIVE_TO_UNI UNI_TO_NATIVE EBCDIC is not supported on versions earlier than 5.7.1 */ /* The meaning of this changed; use the modern version */ #undef isPSXSPC #undef isPSXSPC_A #undef isPSXSPC_L1 /* Hint: isPSXSPC, isPSXSPC_A, isPSXSPC_L1, isPSXSPC_utf8_safe This is equivalent to the corresponding isSPACE-type macro. On perls before 5.18, this matched a vertical tab and SPACE didn't. But the ppport.h SPACE version does match VT in all perl releases. Since VT's are extremely rarely found in real-life files, this difference effectively doesn't matter */ /* Hint: isSPACE, isSPACE_A, isSPACE_L1, isSPACE_utf8_safe Until Perl 5.18, this did not match the vertical tab (VT). The ppport.h version does match it in all perl releases. Since VT's are extremely rarely found in real-life files, this difference effectively doesn't matter */ #ifdef EBCDIC /* This is the first version where these macros are fully correct on EBCDIC * platforms. Relying on * the C library functions, as earlier releases did, * causes problems with * locales */ # if (PERL_BCDVERSION < 0x5022000) # undef isALNUM # undef isALNUM_A # undef isALNUM_L1 # undef isALNUMC # undef isALNUMC_A # undef isALNUMC_L1 # undef isALPHA # undef isALPHA_A # undef isALPHA_L1 # undef isALPHANUMERIC # undef isALPHANUMERIC_A # undef isALPHANUMERIC_L1 # undef isASCII # undef isASCII_A # undef isASCII_L1 # undef isBLANK # undef isBLANK_A # undef isBLANK_L1 # undef isCNTRL # undef isCNTRL_A # undef isCNTRL_L1 # undef isDIGIT # undef isDIGIT_A # undef isDIGIT_L1 # undef isGRAPH # undef isGRAPH_A # undef isGRAPH_L1 # undef isIDCONT # undef isIDCONT_A # undef isIDCONT_L1 # undef isIDFIRST # undef isIDFIRST_A # undef isIDFIRST_L1 # undef isLOWER # undef isLOWER_A # undef isLOWER_L1 # undef isOCTAL # undef isOCTAL_A # undef isOCTAL_L1 # undef isPRINT # undef isPRINT_A # undef isPRINT_L1 # undef isPUNCT # undef isPUNCT_A # undef isPUNCT_L1 # undef isSPACE # undef isSPACE_A # undef isSPACE_L1 # undef isUPPER # undef isUPPER_A # undef isUPPER_L1 # undef isWORDCHAR # undef isWORDCHAR_A # undef isWORDCHAR_L1 # undef isXDIGIT # undef isXDIGIT_A # undef isXDIGIT_L1 # endif #ifndef isASCII # define isASCII(c) (isCNTRL(c) || isPRINT(c)) #endif /* The below is accurate for all EBCDIC code pages supported by * all the versions of Perl overridden by this */ #ifndef isCNTRL # define isCNTRL(c) ( (c) == '\0' || (c) == '\a' || (c) == '\b' \ || (c) == '\f' || (c) == '\n' || (c) == '\r' \ || (c) == '\t' || (c) == '\v' \ || ((c) <= 3 && (c) >= 1) /* SOH, STX, ETX */ \ || (c) == 7 /* U+7F DEL */ \ || ((c) <= 0x13 && (c) >= 0x0E) /* SO, SI */ \ /* DLE, DC[1-3] */ \ || (c) == 0x18 /* U+18 CAN */ \ || (c) == 0x19 /* U+19 EOM */ \ || ((c) <= 0x1F && (c) >= 0x1C) /* [FGRU]S */ \ || (c) == 0x26 /* U+17 ETB */ \ || (c) == 0x27 /* U+1B ESC */ \ || (c) == 0x2D /* U+05 ENQ */ \ || (c) == 0x2E /* U+06 ACK */ \ || (c) == 0x32 /* U+16 SYN */ \ || (c) == 0x37 /* U+04 EOT */ \ || (c) == 0x3C /* U+14 DC4 */ \ || (c) == 0x3D /* U+15 NAK */ \ || (c) == 0x3F /* U+1A SUB */ \ ) #endif #if '^' == 106 /* EBCDIC POSIX-BC */ # define D_PPP_OUTLIER_CONTROL 0x5F #else /* EBCDIC 1047 037 */ # define D_PPP_OUTLIER_CONTROL 0xFF #endif /* The controls are everything below blank, plus one outlier */ #ifndef isCNTRL_L1 # define isCNTRL_L1(c) ((WIDEST_UTYPE) (c) < ' ' \ || (WIDEST_UTYPE) (c) == D_PPP_OUTLIER_CONTROL) #endif /* The ordering of the tests in this and isUPPER are to exclude most characters * early */ #ifndef isLOWER # define isLOWER(c) ( (c) >= 'a' && (c) <= 'z' \ && ( (c) <= 'i' \ || ((c) >= 'j' && (c) <= 'r') \ || (c) >= 's')) #endif #ifndef isUPPER # define isUPPER(c) ( (c) >= 'A' && (c) <= 'Z' \ && ( (c) <= 'I' \ || ((c) >= 'J' && (c) <= 'R') \ || (c) >= 'S')) #endif #else /* Above is EBCDIC; below is ASCII */ # if (PERL_BCDVERSION < 0x5004000) /* The implementation of these in older perl versions can give wrong results if * the C program locale is set to other than the C locale */ # undef isALNUM # undef isALNUM_A # undef isALPHA # undef isALPHA_A # undef isDIGIT # undef isDIGIT_A # undef isIDFIRST # undef isIDFIRST_A # undef isLOWER # undef isLOWER_A # undef isUPPER # undef isUPPER_A # endif # if (PERL_BCDVERSION == 0x5007000) /* this perl made space GRAPH */ # undef isGRAPH # endif # if (PERL_BCDVERSION < 0x5008000) /* earlier perls omitted DEL */ # undef isCNTRL # endif # if (PERL_BCDVERSION < 0x5010000) /* earlier perls included all of the isSPACE() characters, which is wrong. The * version provided by Devel::PPPort always overrides an existing buggy * version. */ # undef isPRINT # undef isPRINT_A # endif # if (PERL_BCDVERSION < 0x5014000) /* earlier perls always returned true if the parameter was a signed char */ # undef isASCII # undef isASCII_A # endif # if (PERL_BCDVERSION < 0x5017008) /* earlier perls didn't include PILCROW, SECTION SIGN */ # undef isPUNCT_L1 # endif # if (PERL_BCDVERSION < 0x5013007) /* khw didn't investigate why this failed */ # undef isALNUMC_L1 #endif # if (PERL_BCDVERSION < 0x5020000) /* earlier perls didn't include \v */ # undef isSPACE # undef isSPACE_A # undef isSPACE_L1 # endif #ifndef isASCII # define isASCII(c) ((WIDEST_UTYPE) (c) <= 127) #endif #ifndef isCNTRL # define isCNTRL(c) ((WIDEST_UTYPE) (c) < ' ' || (c) == 127) #endif #ifndef isCNTRL_L1 # define isCNTRL_L1(c) (isCNTRL(c) || ( (WIDEST_UTYPE) (c) <= 0x9F \ && (WIDEST_UTYPE) (c) >= 0x80)) #endif #ifndef isLOWER # define isLOWER(c) ((c) >= 'a' && (c) <= 'z') #endif #ifndef isUPPER # define isUPPER(c) ((c) <= 'Z' && (c) >= 'A') #endif #endif /* Below are definitions common to EBCDIC and ASCII */ #ifndef isASCII_L1 # define isASCII_L1(c) isASCII(c) #endif #ifndef isASCII_LC # define isASCII_LC(c) isASCII(c) #endif #ifndef isALNUM # define isALNUM(c) isWORDCHAR(c) #endif #ifndef isALNUMC # define isALNUMC(c) isALPHANUMERIC(c) #endif #ifndef isALNUMC_L1 # define isALNUMC_L1(c) isALPHANUMERIC_L1(c) #endif #ifndef isALPHA # define isALPHA(c) (isUPPER(c) || isLOWER(c)) #endif #ifndef isALPHA_L1 # define isALPHA_L1(c) (isUPPER_L1(c) || isLOWER_L1(c)) #endif #ifndef isALPHANUMERIC # define isALPHANUMERIC(c) (isALPHA(c) || isDIGIT(c)) #endif #ifndef isALPHANUMERIC_L1 # define isALPHANUMERIC_L1(c) (isALPHA_L1(c) || isDIGIT(c)) #endif #ifndef isALPHANUMERIC_LC # define isALPHANUMERIC_LC(c) (isALPHA_LC(c) || isDIGIT_LC(c)) #endif #ifndef isBLANK # define isBLANK(c) ((c) == ' ' || (c) == '\t') #endif #ifndef isBLANK_L1 # define isBLANK_L1(c) ( isBLANK(c) \ || ( FITS_IN_8_BITS(c) \ && NATIVE_TO_LATIN1((U8) c) == 0xA0)) #endif #ifndef isBLANK_LC # define isBLANK_LC(c) isBLANK(c) #endif #ifndef isDIGIT # define isDIGIT(c) inRANGE(c, '0', '9') #endif #ifndef isDIGIT_L1 # define isDIGIT_L1(c) isDIGIT(c) #endif #ifndef isGRAPH # define isGRAPH(c) (isWORDCHAR(c) || isPUNCT(c)) #endif #ifndef isGRAPH_L1 # define isGRAPH_L1(c) ( isPRINT_L1(c) \ && (c) != ' ' \ && NATIVE_TO_LATIN1((U8) c) != 0xA0) #endif #ifndef isIDCONT # define isIDCONT(c) isWORDCHAR(c) #endif #ifndef isIDCONT_L1 # define isIDCONT_L1(c) isWORDCHAR_L1(c) #endif #ifndef isIDCONT_LC # define isIDCONT_LC(c) isWORDCHAR_LC(c) #endif #ifndef isIDFIRST # define isIDFIRST(c) (isALPHA(c) || (c) == '_') #endif #ifndef isIDFIRST_L1 # define isIDFIRST_L1(c) (isALPHA_L1(c) || (U8) (c) == '_') #endif #ifndef isIDFIRST_LC # define isIDFIRST_LC(c) (isALPHA_LC(c) || (U8) (c) == '_') #endif #ifndef isLOWER_L1 # define isLOWER_L1(c) ( isLOWER(c) \ || ( FITS_IN_8_BITS(c) \ && ( ( NATIVE_TO_LATIN1((U8) c) >= 0xDF \ && NATIVE_TO_LATIN1((U8) c) != 0xF7) \ || NATIVE_TO_LATIN1((U8) c) == 0xAA \ || NATIVE_TO_LATIN1((U8) c) == 0xBA \ || NATIVE_TO_LATIN1((U8) c) == 0xB5))) #endif #ifndef isOCTAL # define isOCTAL(c) (((WIDEST_UTYPE)((c)) & ~7) == '0') #endif #ifndef isOCTAL_L1 # define isOCTAL_L1(c) isOCTAL(c) #endif #ifndef isPRINT # define isPRINT(c) (isGRAPH(c) || (c) == ' ') #endif #ifndef isPRINT_L1 # define isPRINT_L1(c) (FITS_IN_8_BITS(c) && ! isCNTRL_L1(c)) #endif #ifndef isPSXSPC # define isPSXSPC(c) isSPACE(c) #endif #ifndef isPSXSPC_L1 # define isPSXSPC_L1(c) isSPACE_L1(c) #endif #ifndef isPUNCT # define isPUNCT(c) ( (c) == '-' || (c) == '!' || (c) == '"' \ || (c) == '#' || (c) == '$' || (c) == '%' \ || (c) == '&' || (c) == '\'' || (c) == '(' \ || (c) == ')' || (c) == '*' || (c) == '+' \ || (c) == ',' || (c) == '.' || (c) == '/' \ || (c) == ':' || (c) == ';' || (c) == '<' \ || (c) == '=' || (c) == '>' || (c) == '?' \ || (c) == '@' || (c) == '[' || (c) == '\\' \ || (c) == ']' || (c) == '^' || (c) == '_' \ || (c) == '`' || (c) == '{' || (c) == '|' \ || (c) == '}' || (c) == '~') #endif #ifndef isPUNCT_L1 # define isPUNCT_L1(c) ( isPUNCT(c) \ || ( FITS_IN_8_BITS(c) \ && ( NATIVE_TO_LATIN1((U8) c) == 0xA1 \ || NATIVE_TO_LATIN1((U8) c) == 0xA7 \ || NATIVE_TO_LATIN1((U8) c) == 0xAB \ || NATIVE_TO_LATIN1((U8) c) == 0xB6 \ || NATIVE_TO_LATIN1((U8) c) == 0xB7 \ || NATIVE_TO_LATIN1((U8) c) == 0xBB \ || NATIVE_TO_LATIN1((U8) c) == 0xBF))) #endif #ifndef isSPACE # define isSPACE(c) ( isBLANK(c) || (c) == '\n' || (c) == '\r' \ || (c) == '\v' || (c) == '\f') #endif #ifndef isSPACE_L1 # define isSPACE_L1(c) ( isSPACE(c) \ || (FITS_IN_8_BITS(c) \ && ( NATIVE_TO_LATIN1((U8) c) == 0x85 \ || NATIVE_TO_LATIN1((U8) c) == 0xA0))) #endif #ifndef isUPPER_L1 # define isUPPER_L1(c) ( isUPPER(c) \ || (FITS_IN_8_BITS(c) \ && ( NATIVE_TO_LATIN1((U8) c) >= 0xC0 \ && NATIVE_TO_LATIN1((U8) c) <= 0xDE \ && NATIVE_TO_LATIN1((U8) c) != 0xD7))) #endif #ifndef isWORDCHAR # define isWORDCHAR(c) (isALPHANUMERIC(c) || (c) == '_') #endif #ifndef isWORDCHAR_L1 # define isWORDCHAR_L1(c) (isIDFIRST_L1(c) || isDIGIT(c)) #endif #ifndef isWORDCHAR_LC # define isWORDCHAR_LC(c) (isIDFIRST_LC(c) || isDIGIT_LC(c)) #endif #ifndef isXDIGIT # define isXDIGIT(c) ( isDIGIT(c) \ || ((c) >= 'a' && (c) <= 'f') \ || ((c) >= 'A' && (c) <= 'F')) #endif #ifndef isXDIGIT_L1 # define isXDIGIT_L1(c) isXDIGIT(c) #endif #ifndef isXDIGIT_LC # define isXDIGIT_LC(c) isxdigit(c) #endif #ifndef isALNUM_A # define isALNUM_A(c) isALNUM(c) #endif #ifndef isALNUMC_A # define isALNUMC_A(c) isALNUMC(c) #endif #ifndef isALPHA_A # define isALPHA_A(c) isALPHA(c) #endif #ifndef isALPHANUMERIC_A # define isALPHANUMERIC_A(c) isALPHANUMERIC(c) #endif #ifndef isASCII_A # define isASCII_A(c) isASCII(c) #endif #ifndef isBLANK_A # define isBLANK_A(c) isBLANK(c) #endif #ifndef isCNTRL_A # define isCNTRL_A(c) isCNTRL(c) #endif #ifndef isDIGIT_A # define isDIGIT_A(c) isDIGIT(c) #endif #ifndef isGRAPH_A # define isGRAPH_A(c) isGRAPH(c) #endif #ifndef isIDCONT_A # define isIDCONT_A(c) isIDCONT(c) #endif #ifndef isIDFIRST_A # define isIDFIRST_A(c) isIDFIRST(c) #endif #ifndef isLOWER_A # define isLOWER_A(c) isLOWER(c) #endif #ifndef isOCTAL_A # define isOCTAL_A(c) isOCTAL(c) #endif #ifndef isPRINT_A # define isPRINT_A(c) isPRINT(c) #endif #ifndef isPSXSPC_A # define isPSXSPC_A(c) isPSXSPC(c) #endif #ifndef isPUNCT_A # define isPUNCT_A(c) isPUNCT(c) #endif #ifndef isSPACE_A # define isSPACE_A(c) isSPACE(c) #endif #ifndef isUPPER_A # define isUPPER_A(c) isUPPER(c) #endif #ifndef isWORDCHAR_A # define isWORDCHAR_A(c) isWORDCHAR(c) #endif #ifndef isXDIGIT_A # define isXDIGIT_A(c) isXDIGIT(c) #endif #ifndef isASCII_utf8_safe # define isASCII_utf8_safe(s,e) (((e) - (s)) <= 0 ? 0 : isASCII(*(s))) #endif #ifndef isASCII_uvchr # define isASCII_uvchr(c) (FITS_IN_8_BITS(c) ? isASCII_L1(c) : 0) #endif #if (PERL_BCDVERSION >= 0x5006000) # ifdef isALPHA_uni /* If one defined, all are; this is just an exemplar */ # define D_PPP_is_ctype(upper, lower, c) \ (FITS_IN_8_BITS(c) \ ? is ## upper ## _L1(c) \ : is ## upper ## _uni((UV) (c))) /* _uni is old synonym */ # else # define D_PPP_is_ctype(upper, lower, c) \ (FITS_IN_8_BITS(c) \ ? is ## upper ## _L1(c) \ : is_uni_ ## lower((UV) (c))) /* is_uni_ is even older */ # endif #ifndef isALPHA_uvchr # define isALPHA_uvchr(c) D_PPP_is_ctype(ALPHA, alpha, c) #endif #ifndef isALPHANUMERIC_uvchr # define isALPHANUMERIC_uvchr(c) (isALPHA_uvchr(c) || isDIGIT_uvchr(c)) #endif # ifdef is_uni_blank #ifndef isBLANK_uvchr # define isBLANK_uvchr(c) D_PPP_is_ctype(BLANK, blank, c) #endif # else #ifndef isBLANK_uvchr # define isBLANK_uvchr(c) (FITS_IN_8_BITS(c) \ ? isBLANK_L1(c) \ : ( (UV) (c) == 0x1680 /* Unicode 3.0 */ \ || inRANGE((UV) (c), 0x2000, 0x200A) \ || (UV) (c) == 0x202F /* Unicode 3.0 */\ || (UV) (c) == 0x205F /* Unicode 3.2 */\ || (UV) (c) == 0x3000)) #endif # endif #ifndef isCNTRL_uvchr # define isCNTRL_uvchr(c) D_PPP_is_ctype(CNTRL, cntrl, c) #endif #ifndef isDIGIT_uvchr # define isDIGIT_uvchr(c) D_PPP_is_ctype(DIGIT, digit, c) #endif #ifndef isGRAPH_uvchr # define isGRAPH_uvchr(c) D_PPP_is_ctype(GRAPH, graph, c) #endif #ifndef isIDCONT_uvchr # define isIDCONT_uvchr(c) isWORDCHAR_uvchr(c) #endif #ifndef isIDFIRST_uvchr # define isIDFIRST_uvchr(c) D_PPP_is_ctype(IDFIRST, idfirst, c) #endif #ifndef isLOWER_uvchr # define isLOWER_uvchr(c) D_PPP_is_ctype(LOWER, lower, c) #endif #ifndef isPRINT_uvchr # define isPRINT_uvchr(c) D_PPP_is_ctype(PRINT, print, c) #endif #ifndef isPSXSPC_uvchr # define isPSXSPC_uvchr(c) isSPACE_uvchr(c) #endif #ifndef isPUNCT_uvchr # define isPUNCT_uvchr(c) D_PPP_is_ctype(PUNCT, punct, c) #endif #ifndef isSPACE_uvchr # define isSPACE_uvchr(c) D_PPP_is_ctype(SPACE, space, c) #endif #ifndef isUPPER_uvchr # define isUPPER_uvchr(c) D_PPP_is_ctype(UPPER, upper, c) #endif #ifndef isXDIGIT_uvchr # define isXDIGIT_uvchr(c) D_PPP_is_ctype(XDIGIT, xdigit, c) #endif #ifndef isWORDCHAR_uvchr # define isWORDCHAR_uvchr(c) (FITS_IN_8_BITS(c) \ ? isWORDCHAR_L1(c) : isALPHANUMERIC_uvchr(c)) #endif #ifndef isALPHA_utf8_safe # define isALPHA_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, ALPHA) #endif # ifdef isALPHANUMERIC_utf8 #ifndef isALPHANUMERIC_utf8_safe # define isALPHANUMERIC_utf8_safe(s,e) \ D_PPP_IS_GENERIC_UTF8_SAFE(s, e, ALPHANUMERIC) #endif # else #ifndef isALPHANUMERIC_utf8_safe # define isALPHANUMERIC_utf8_safe(s,e) \ (isALPHA_utf8_safe(s,e) || isDIGIT_utf8_safe(s,e)) #endif # endif /* This was broken before 5.18, and just use this instead of worrying about * which releases the official works on */ # if 'A' == 65 #ifndef isBLANK_utf8_safe # define isBLANK_utf8_safe(s,e) \ ( ( LIKELY((e) > (s)) ) ? /* Machine generated */ \ ( ( 0x09 == ((const U8*)s)[0] || 0x20 == ((const U8*)s)[0] ) ? 1 \ : ( LIKELY(((e) - (s)) >= UTF8SKIP(s)) ) ? \ ( ( 0xC2 == ((const U8*)s)[0] ) ? \ ( ( 0xA0 == ((const U8*)s)[1] ) ? 2 : 0 ) \ : ( 0xE1 == ((const U8*)s)[0] ) ? \ ( ( ( 0x9A == ((const U8*)s)[1] ) && ( 0x80 == ((const U8*)s)[2] ) ) ? 3 : 0 )\ : ( 0xE2 == ((const U8*)s)[0] ) ? \ ( ( 0x80 == ((const U8*)s)[1] ) ? \ ( ( inRANGE(((const U8*)s)[2], 0x80, 0x8A ) || 0xAF == ((const U8*)s)[2] ) ? 3 : 0 )\ : ( ( 0x81 == ((const U8*)s)[1] ) && ( 0x9F == ((const U8*)s)[2] ) ) ? 3 : 0 )\ : ( ( ( 0xE3 == ((const U8*)s)[0] ) && ( 0x80 == ((const U8*)s)[1] ) ) && ( 0x80 == ((const U8*)s)[2] ) ) ? 3 : 0 )\ : 0 ) \ : 0 ) #endif # elif 'A' == 193 && '^' == 95 /* EBCDIC 1047 */ #ifndef isBLANK_utf8_safe # define isBLANK_utf8_safe(s,e) \ ( ( LIKELY((e) > (s)) ) ? \ ( ( 0x05 == ((const U8*)s)[0] || 0x40 == ((const U8*)s)[0] ) ? 1 \ : ( LIKELY(((e) - (s)) >= UTF8SKIP(s)) ) ? \ ( ( 0x80 == ((const U8*)s)[0] ) ? \ ( ( 0x41 == ((const U8*)s)[1] ) ? 2 : 0 ) \ : ( 0xBC == ((const U8*)s)[0] ) ? \ ( ( ( 0x63 == ((const U8*)s)[1] ) && ( 0x41 == ((const U8*)s)[2] ) ) ? 3 : 0 )\ : ( 0xCA == ((const U8*)s)[0] ) ? \ ( ( 0x41 == ((const U8*)s)[1] ) ? \ ( ( inRANGE(((const U8*)s)[2], 0x41, 0x4A ) || 0x51 == ((const U8*)s)[2] ) ? 3 : 0 )\ : ( 0x42 == ((const U8*)s)[1] ) ? \ ( ( 0x56 == ((const U8*)s)[2] ) ? 3 : 0 ) \ : ( ( 0x43 == ((const U8*)s)[1] ) && ( 0x73 == ((const U8*)s)[2] ) ) ? 3 : 0 )\ : ( ( ( 0xCE == ((const U8*)s)[0] ) && ( 0x41 == ((const U8*)s)[1] ) ) && ( 0x41 == ((const U8*)s)[2] ) ) ? 3 : 0 )\ : 0 ) \ : 0 ) #endif # elif 'A' == 193 && '^' == 176 /* EBCDIC 037 */ #ifndef isBLANK_utf8_safe # define isBLANK_utf8_safe(s,e) \ ( ( LIKELY((e) > (s)) ) ? \ ( ( 0x05 == ((const U8*)s)[0] || 0x40 == ((const U8*)s)[0] ) ? 1 \ : ( LIKELY(((e) - (s)) >= UTF8SKIP(s)) ) ? \ ( ( 0x78 == ((const U8*)s)[0] ) ? \ ( ( 0x41 == ((const U8*)s)[1] ) ? 2 : 0 ) \ : ( 0xBD == ((const U8*)s)[0] ) ? \ ( ( ( 0x62 == ((const U8*)s)[1] ) && ( 0x41 == ((const U8*)s)[2] ) ) ? 3 : 0 )\ : ( 0xCA == ((const U8*)s)[0] ) ? \ ( ( 0x41 == ((const U8*)s)[1] ) ? \ ( ( inRANGE(((const U8*)s)[2], 0x41, 0x4A ) || 0x51 == ((const U8*)s)[2] ) ? 3 : 0 )\ : ( 0x42 == ((const U8*)s)[1] ) ? \ ( ( 0x56 == ((const U8*)s)[2] ) ? 3 : 0 ) \ : ( ( 0x43 == ((const U8*)s)[1] ) && ( 0x72 == ((const U8*)s)[2] ) ) ? 3 : 0 )\ : ( ( ( 0xCE == ((const U8*)s)[0] ) && ( 0x41 == ((const U8*)s)[1] ) ) && ( 0x41 == ((const U8*)s)[2] ) ) ? 3 : 0 )\ : 0 ) \ : 0 ) #endif # else # error Unknown character set # endif #ifndef isCNTRL_utf8_safe # define isCNTRL_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, CNTRL) #endif #ifndef isDIGIT_utf8_safe # define isDIGIT_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, DIGIT) #endif #ifndef isGRAPH_utf8_safe # define isGRAPH_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, GRAPH) #endif # ifdef isIDCONT_utf8 #ifndef isIDCONT_utf8_safe # define isIDCONT_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, IDCONT) #endif # else #ifndef isIDCONT_utf8_safe # define isIDCONT_utf8_safe(s,e) isWORDCHAR_utf8_safe(s,e) #endif # endif #ifndef isIDFIRST_utf8_safe # define isIDFIRST_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, IDFIRST) #endif #ifndef isLOWER_utf8_safe # define isLOWER_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, LOWER) #endif #ifndef isPRINT_utf8_safe # define isPRINT_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, PRINT) #endif # undef isPSXSPC_utf8_safe /* Use the modern definition */ #ifndef isPSXSPC_utf8_safe # define isPSXSPC_utf8_safe(s,e) isSPACE_utf8_safe(s,e) #endif #ifndef isPUNCT_utf8_safe # define isPUNCT_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, PUNCT) #endif #ifndef isSPACE_utf8_safe # define isSPACE_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, SPACE) #endif #ifndef isUPPER_utf8_safe # define isUPPER_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, UPPER) #endif # ifdef isWORDCHAR_utf8 #ifndef isWORDCHAR_utf8_safe # define isWORDCHAR_utf8_safe(s,e) D_PPP_IS_GENERIC_UTF8_SAFE(s, e, WORDCHAR) #endif # else #ifndef isWORDCHAR_utf8_safe # define isWORDCHAR_utf8_safe(s,e) \ (isALPHANUMERIC_utf8_safe(s,e) || (*(s)) == '_') #endif # endif /* This was broken before 5.12, and just use this instead of worrying about * which releases the official works on */ # if 'A' == 65 #ifndef isXDIGIT_utf8_safe # define isXDIGIT_utf8_safe(s,e) \ ( ( LIKELY((e) > (s)) ) ? \ ( ( inRANGE(((const U8*)s)[0], 0x30, 0x39 ) || inRANGE(((const U8*)s)[0], 0x41, 0x46 ) || inRANGE(((const U8*)s)[0], 0x61, 0x66 ) ) ? 1\ : ( ( LIKELY(((e) - (s)) >= UTF8SKIP(s)) ) && ( 0xEF == ((const U8*)s)[0] ) ) ? ( ( 0xBC == ((const U8*)s)[1] ) ?\ ( ( inRANGE(((const U8*)s)[2], 0x90, 0x99 ) || inRANGE(((const U8*)s)[2], 0xA1, 0xA6 ) ) ? 3 : 0 )\ : ( ( 0xBD == ((const U8*)s)[1] ) && ( inRANGE(((const U8*)s)[2], 0x81, 0x86 ) ) ) ? 3 : 0 ) : 0 )\ : 0 ) #endif # elif 'A' == 193 && '^' == 95 /* EBCDIC 1047 */ #ifndef isXDIGIT_utf8_safe # define isXDIGIT_utf8_safe(s,e) \ ( ( LIKELY((e) > (s)) ) ? \ ( ( inRANGE(((const U8*)s)[0], 0x81, 0x86 ) || inRANGE(((const U8*)s)[0], 0xC1, 0xC6 ) || inRANGE(((const U8*)s)[0], 0xF0, 0xF9 ) ) ? 1\ : ( ( ( LIKELY(((e) - (s)) >= UTF8SKIP(s)) ) && ( 0xDD == ((const U8*)s)[0] ) ) && ( 0x73 == ((const U8*)s)[1] ) ) ? ( ( 0x67 == ((const U8*)s)[2] ) ?\ ( ( inRANGE(((const U8*)s)[3], 0x57, 0x59 ) || inRANGE(((const U8*)s)[3], 0x62, 0x68 ) ) ? 4 : 0 )\ : ( ( inRANGE(((const U8*)s)[2], 0x68, 0x69 ) ) && ( inRANGE(((const U8*)s)[3], 0x42, 0x47 ) ) ) ? 4 : 0 ) : 0 )\ : 0 ) #endif # elif 'A' == 193 && '^' == 176 /* EBCDIC 037 */ #ifndef isXDIGIT_utf8_safe # define isXDIGIT_utf8_safe(s,e) \ ( ( LIKELY((e) > (s)) ) ? \ ( ( inRANGE(((const U8*)s)[0], 0x81, 0x86 ) || inRANGE(((const U8*)s)[0], 0xC1, 0xC6 ) || inRANGE(((const U8*)s)[0], 0xF0, 0xF9 ) ) ? 1\ : ( ( ( LIKELY(((e) - (s)) >= UTF8SKIP(s)) ) && ( 0xDD == ((const U8*)s)[0] ) ) && ( 0x72 == ((const U8*)s)[1] ) ) ? ( ( 0x66 == ((const U8*)s)[2] ) ?\ ( ( inRANGE(((const U8*)s)[3], 0x57, 0x59 ) || 0x5F == ((const U8*)s)[3] || inRANGE(((const U8*)s)[3], 0x62, 0x67 ) ) ? 4 : 0 )\ : ( ( inRANGE(((const U8*)s)[2], 0x67, 0x68 ) ) && ( inRANGE(((const U8*)s)[3], 0x42, 0x47 ) ) ) ? 4 : 0 ) : 0 )\ : 0 ) #endif # else # error Unknown character set # endif #ifndef isALPHA_LC_utf8_safe # define isALPHA_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, ALPHA) #endif # ifdef isALPHANUMERIC_utf8 #ifndef isALPHANUMERIC_LC_utf8_safe # define isALPHANUMERIC_LC_utf8_safe(s,e) \ D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, ALPHANUMERIC) #endif # else #ifndef isALPHANUMERIC_LC_utf8_safe # define isALPHANUMERIC_LC_utf8_safe(s,e) \ (isALPHA_LC_utf8_safe(s,e) || isDIGIT_LC_utf8_safe(s,e)) #endif # endif #ifndef isBLANK_LC_utf8_safe # define isBLANK_LC_utf8_safe(s,e) \ D_PPP_IS_GENERIC_LC_UTF8_SAFE_BROKEN(s, e, BLANK) #endif #ifndef isCNTRL_LC_utf8_safe # define isCNTRL_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, CNTRL) #endif #ifndef isDIGIT_LC_utf8_safe # define isDIGIT_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, DIGIT) #endif #ifndef isGRAPH_LC_utf8_safe # define isGRAPH_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, GRAPH) #endif # ifdef isIDCONT_utf8 #ifndef isIDCONT_LC_utf8_safe # define isIDCONT_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, IDCONT) #endif # else #ifndef isIDCONT_LC_utf8_safe # define isIDCONT_LC_utf8_safe(s,e) isWORDCHAR_LC_utf8_safe(s,e) #endif # endif #ifndef isIDFIRST_LC_utf8_safe # define isIDFIRST_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, IDFIRST) #endif #ifndef isLOWER_LC_utf8_safe # define isLOWER_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, LOWER) #endif #ifndef isPRINT_LC_utf8_safe # define isPRINT_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, PRINT) #endif # undef isPSXSPC_LC_utf8_safe /* Use the modern definition */ #ifndef isPSXSPC_LC_utf8_safe # define isPSXSPC_LC_utf8_safe(s,e) isSPACE_LC_utf8_safe(s,e) #endif #ifndef isPUNCT_LC_utf8_safe # define isPUNCT_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, PUNCT) #endif #ifndef isSPACE_LC_utf8_safe # define isSPACE_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, SPACE) #endif #ifndef isUPPER_LC_utf8_safe # define isUPPER_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, UPPER) #endif # ifdef isWORDCHAR_utf8 #ifndef isWORDCHAR_LC_utf8_safe # define isWORDCHAR_LC_utf8_safe(s,e) D_PPP_IS_GENERIC_LC_UTF8_SAFE(s, e, WORDCHAR) #endif # else #ifndef isWORDCHAR_LC_utf8_safe # define isWORDCHAR_LC_utf8_safe(s,e) \ (isALPHANUMERIC_LC_utf8_safe(s,e) || (*(s)) == '_') #endif # endif #ifndef isXDIGIT_LC_utf8_safe # define isXDIGIT_LC_utf8_safe(s,e) \ D_PPP_IS_GENERIC_LC_UTF8_SAFE_BROKEN(s, e, XDIGIT) #endif /* Warning: isALPHANUMERIC_utf8_safe, isALPHA_utf8_safe, isASCII_utf8_safe, * isBLANK_utf8_safe, isCNTRL_utf8_safe, isDIGIT_utf8_safe, isGRAPH_utf8_safe, * isIDCONT_utf8_safe, isIDFIRST_utf8_safe, isLOWER_utf8_safe, * isPRINT_utf8_safe, isPSXSPC_utf8_safe, isPUNCT_utf8_safe, isSPACE_utf8_safe, * isUPPER_utf8_safe, isWORDCHAR_utf8_safe, isWORDCHAR_utf8_safe, * isXDIGIT_utf8_safe, * isALPHANUMERIC_LC_utf8_safe, isALPHA_LC_utf8_safe, isASCII_LC_utf8_safe, * isBLANK_LC_utf8_safe, isCNTRL_LC_utf8_safe, isDIGIT_LC_utf8_safe, * isGRAPH_LC_utf8_safe, isIDCONT_LC_utf8_safe, isIDFIRST_LC_utf8_safe, * isLOWER_LC_utf8_safe, isPRINT_LC_utf8_safe, isPSXSPC_LC_utf8_safe, * isPUNCT_LC_utf8_safe, isSPACE_LC_utf8_safe, isUPPER_LC_utf8_safe, * isWORDCHAR_LC_utf8_safe, isWORDCHAR_LC_utf8_safe, isXDIGIT_LC_utf8_safe, * isALPHANUMERIC_uvchr, isALPHA_uvchr, isASCII_uvchr, isBLANK_uvchr, * isCNTRL_uvchr, isDIGIT_uvchr, isGRAPH_uvchr, isIDCONT_uvchr, * isIDFIRST_uvchr, isLOWER_uvchr, isPRINT_uvchr, isPSXSPC_uvchr, * isPUNCT_uvchr, isSPACE_uvchr, isUPPER_uvchr, isWORDCHAR_uvchr, * isWORDCHAR_uvchr, isXDIGIT_uvchr * * The UTF-8 handling is buggy in early Perls, and this can give inaccurate * results for code points above 0xFF, until the implementation started * settling down in 5.12 and 5.14 */ #endif #define D_PPP_TOO_SHORT_MSG "Malformed UTF-8 character starting with:" \ " \\x%02x (too short; %d bytes available, need" \ " %d)\n" /* Perls starting here had a new API which handled multi-character results */ #if (PERL_BCDVERSION >= 0x5007003) #ifndef toLOWER_uvchr # define toLOWER_uvchr(c, s, l) UNI_TO_NATIVE(to_uni_lower(NATIVE_TO_UNI(c), s, l)) #endif #ifndef toUPPER_uvchr # define toUPPER_uvchr(c, s, l) UNI_TO_NATIVE(to_uni_upper(NATIVE_TO_UNI(c), s, l)) #endif #ifndef toTITLE_uvchr # define toTITLE_uvchr(c, s, l) UNI_TO_NATIVE(to_uni_title(NATIVE_TO_UNI(c), s, l)) #endif #ifndef toFOLD_uvchr # define toFOLD_uvchr(c, s, l) UNI_TO_NATIVE(to_uni_fold( NATIVE_TO_UNI(c), s, l)) #endif # if (PERL_BCDVERSION != 0x5015006) /* Just this version is broken */ /* Prefer the macro to the function */ # if defined toLOWER_utf8 # define D_PPP_TO_LOWER_CALLEE(s,r,l) toLOWER_utf8(s,r,l) # else # define D_PPP_TO_LOWER_CALLEE(s,r,l) to_utf8_lower(s,r,l) # endif # if defined toTITLE_utf8 # define D_PPP_TO_TITLE_CALLEE(s,r,l) toTITLE_utf8(s,r,l) # else # define D_PPP_TO_TITLE_CALLEE(s,r,l) to_utf8_title(s,r,l) # endif # if defined toUPPER_utf8 # define D_PPP_TO_UPPER_CALLEE(s,r,l) toUPPER_utf8(s,r,l) # else # define D_PPP_TO_UPPER_CALLEE(s,r,l) to_utf8_upper(s,r,l) # endif # if defined toFOLD_utf8 # define D_PPP_TO_FOLD_CALLEE(s,r,l) toFOLD_utf8(s,r,l) # else # define D_PPP_TO_FOLD_CALLEE(s,r,l) to_utf8_fold(s,r,l) # endif # else /* Below is 5.15.6, which failed to make the macros available # outside of core, so we have to use the 'Perl_' form. khw # decided it was easier to just handle this case than have to # document the exception, and make an exception in the tests below # */ # define D_PPP_TO_LOWER_CALLEE(s,r,l) \ Perl__to_utf8_lower_flags(aTHX_ s, r, l, 0, NULL) # define D_PPP_TO_TITLE_CALLEE(s,r,l) \ Perl__to_utf8_title_flags(aTHX_ s, r, l, 0, NULL) # define D_PPP_TO_UPPER_CALLEE(s,r,l) \ Perl__to_utf8_upper_flags(aTHX_ s, r, l, 0, NULL) # define D_PPP_TO_FOLD_CALLEE(s,r,l) \ Perl__to_utf8_fold_flags(aTHX_ s, r, l, FOLD_FLAGS_FULL, NULL) # endif /* The actual implementation of the backported macros. If too short, croak, * otherwise call the original that doesn't have an upper limit parameter */ # define D_PPP_GENERIC_MULTI_ARG_TO(name, s, e,r,l) \ (((((e) - (s)) <= 0) \ /* We could just do nothing, but modern perls croak */ \ ? (croak("Attempting case change on zero length string"), \ 0) /* So looks like it returns something, and will compile */ \ : ((e) - (s)) < UTF8SKIP(s)) \ ? (croak(D_PPP_TOO_SHORT_MSG, \ s[0], (int) ((e) - (s)), (int) UTF8SKIP(s)), \ 0) \ : D_PPP_TO_ ## name ## _CALLEE(s,r,l)) #ifndef toUPPER_utf8_safe # define toUPPER_utf8_safe(s,e,r,l) \ D_PPP_GENERIC_MULTI_ARG_TO(UPPER,s,e,r,l) #endif #ifndef toLOWER_utf8_safe # define toLOWER_utf8_safe(s,e,r,l) \ D_PPP_GENERIC_MULTI_ARG_TO(LOWER,s,e,r,l) #endif #ifndef toTITLE_utf8_safe # define toTITLE_utf8_safe(s,e,r,l) \ D_PPP_GENERIC_MULTI_ARG_TO(TITLE,s,e,r,l) #endif #ifndef toFOLD_utf8_safe # define toFOLD_utf8_safe(s,e,r,l) \ D_PPP_GENERIC_MULTI_ARG_TO(FOLD,s,e,r,l) #endif #elif (PERL_BCDVERSION >= 0x5006000) /* Here we have UTF-8 support, but using the original API where the case * changing functions merely returned the changed code point; hence they * couldn't handle multi-character results. */ # ifdef uvchr_to_utf8 # define D_PPP_UV_TO_UTF8 uvchr_to_utf8 # else # define D_PPP_UV_TO_UTF8 uv_to_utf8 # endif /* Get the utf8 of the case changed value, and store its length; then have * to re-calculate the changed case value in order to return it */ # define D_PPP_GENERIC_SINGLE_ARG_TO_UVCHR(name, c, s, l) \ (*(l) = (D_PPP_UV_TO_UTF8(s, \ UNI_TO_NATIVE(to_uni_ ## name(NATIVE_TO_UNI(c)))) - (s)), \ UNI_TO_NATIVE(to_uni_ ## name(NATIVE_TO_UNI(c)))) #ifndef toLOWER_uvchr # define toLOWER_uvchr(c, s, l) \ D_PPP_GENERIC_SINGLE_ARG_TO_UVCHR(lower, c, s, l) #endif #ifndef toUPPER_uvchr # define toUPPER_uvchr(c, s, l) \ D_PPP_GENERIC_SINGLE_ARG_TO_UVCHR(upper, c, s, l) #endif #ifndef toTITLE_uvchr # define toTITLE_uvchr(c, s, l) \ D_PPP_GENERIC_SINGLE_ARG_TO_UVCHR(title, c, s, l) #endif #ifndef toFOLD_uvchr # define toFOLD_uvchr(c, s, l) toLOWER_uvchr(c, s, l) #endif # define D_PPP_GENERIC_SINGLE_ARG_TO_UTF8(name, s, e, r, l) \ (((((e) - (s)) <= 0) \ ? (croak("Attempting case change on zero length string"), \ 0) /* So looks like it returns something, and will compile */ \ : ((e) - (s)) < UTF8SKIP(s)) \ ? (croak(D_PPP_TOO_SHORT_MSG, \ s[0], (int) ((e) - (s)), (int) UTF8SKIP(s)), \ 0) \ /* Get the changed code point and store its UTF-8 */ \ : D_PPP_UV_TO_UTF8(r, to_utf8_ ## name(s)), \ /* Then store its length, and re-get code point for return */ \ *(l) = UTF8SKIP(r), to_utf8_ ## name(r)) /* Warning: toUPPER_utf8_safe, toLOWER_utf8_safe, toTITLE_utf8_safe, * toUPPER_uvchr, toLOWER_uvchr, toTITLE_uvchr The UTF-8 case changing operations had bugs before around 5.12 or 5.14; this backport does not correct them. In perls before 7.3, multi-character case changing is not implemented; this backport uses the simple case changes available in those perls. */ #ifndef toUPPER_utf8_safe # define toUPPER_utf8_safe(s,e,r,l) \ D_PPP_GENERIC_SINGLE_ARG_TO_UTF8(upper, s, e, r, l) #endif #ifndef toLOWER_utf8_safe # define toLOWER_utf8_safe(s,e,r,l) \ D_PPP_GENERIC_SINGLE_ARG_TO_UTF8(lower, s, e, r, l) #endif #ifndef toTITLE_utf8_safe # define toTITLE_utf8_safe(s,e,r,l) \ D_PPP_GENERIC_SINGLE_ARG_TO_UTF8(title, s, e, r, l) #endif /* Warning: toFOLD_utf8_safe, toFOLD_uvchr The UTF-8 case changing operations had bugs before around 5.12 or 5.14; this backport does not correct them. In perls before 7.3, case folding is not implemented; instead, this backport substitutes simple (not multi-character, which isn't available) lowercasing. This gives the correct result in most, but not all, instances */ #ifndef toFOLD_utf8_safe # define toFOLD_utf8_safe(s,e,r,l) toLOWER_utf8_safe(s,e,r,l) #endif #endif /* Until we figure out how to support this in older perls... */ #if (PERL_BCDVERSION >= 0x5008000) #ifndef HeUTF8 # define HeUTF8(he) ((HeKLEN(he) == HEf_SVKEY) ? \ SvUTF8(HeKEY_sv(he)) : \ (U32)HeKUTF8(he)) #endif #endif #ifndef C_ARRAY_LENGTH # define C_ARRAY_LENGTH(a) (sizeof(a)/sizeof((a)[0])) #endif #ifndef C_ARRAY_END # define C_ARRAY_END(a) ((a) + C_ARRAY_LENGTH(a)) #endif #ifndef LIKELY # define LIKELY(x) (x) #endif #ifndef UNLIKELY # define UNLIKELY(x) (x) #endif #ifndef MUTABLE_PTR #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) # define MUTABLE_PTR(p) ({ void *_p = (p); _p; }) #else # define MUTABLE_PTR(p) ((void *) (p)) #endif #endif #ifndef MUTABLE_SV # define MUTABLE_SV(p) ((SV *)MUTABLE_PTR(p)) #endif #if (PERL_BCDVERSION >= 0x5004000) && !defined(vnewSVpvf) #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) # define vnewSVpvf(pat, args) ({ SV *_sv = newSV(0); sv_vsetpvfn(_sv, (pat), strlen((pat)), (args), Null(SV**), 0, Null(bool*)); _sv; }) #else # define vnewSVpvf(pat, args) ((PL_Sv = newSV(0)), sv_vsetpvfn(PL_Sv, (pat), strlen((pat)), (args), Null(SV**), 0, Null(bool*)), PL_Sv) #endif #endif #if (PERL_BCDVERSION >= 0x5004000) && !defined(sv_vcatpvf) # define sv_vcatpvf(sv, pat, args) sv_vcatpvfn(sv, pat, strlen(pat), args, Null(SV**), 0, Null(bool*)) #endif #if (PERL_BCDVERSION >= 0x5004000) && !defined(sv_vsetpvf) # define sv_vsetpvf(sv, pat, args) sv_vsetpvfn(sv, pat, strlen(pat), args, Null(SV**), 0, Null(bool*)) #endif #if (PERL_BCDVERSION >= 0x5004000) && !defined(sv_catpvf_mg) #if defined(NEED_sv_catpvf_mg) static void DPPP_(my_sv_catpvf_mg)(pTHX_ SV * const sv, const char * const pat, ...); static #else extern void DPPP_(my_sv_catpvf_mg)(pTHX_ SV * const sv, const char * const pat, ...); #endif #if defined(NEED_sv_catpvf_mg) || defined(NEED_sv_catpvf_mg_GLOBAL) #define Perl_sv_catpvf_mg DPPP_(my_sv_catpvf_mg) void DPPP_(my_sv_catpvf_mg)(pTHX_ SV * const sv, const char * const pat, ...) { va_list args; va_start(args, pat); sv_vcatpvfn(sv, pat, strlen(pat), &args, Null(SV**), 0, Null(bool*)); SvSETMAGIC(sv); va_end(args); } #endif #endif #ifdef PERL_IMPLICIT_CONTEXT #if (PERL_BCDVERSION >= 0x5004000) && !defined(sv_catpvf_mg_nocontext) #if defined(NEED_sv_catpvf_mg_nocontext) static void DPPP_(my_sv_catpvf_mg_nocontext)(SV * const sv, const char * const pat, ...); static #else extern void DPPP_(my_sv_catpvf_mg_nocontext)(SV * const sv, const char * const pat, ...); #endif #if defined(NEED_sv_catpvf_mg_nocontext) || defined(NEED_sv_catpvf_mg_nocontext_GLOBAL) #define sv_catpvf_mg_nocontext DPPP_(my_sv_catpvf_mg_nocontext) #define Perl_sv_catpvf_mg_nocontext DPPP_(my_sv_catpvf_mg_nocontext) void DPPP_(my_sv_catpvf_mg_nocontext)(SV * const sv, const char * const pat, ...) { dTHX; va_list args; va_start(args, pat); sv_vcatpvfn(sv, pat, strlen(pat), &args, Null(SV**), 0, Null(bool*)); SvSETMAGIC(sv); va_end(args); } #endif #endif #endif /* sv_catpvf_mg depends on sv_catpvf_mg_nocontext */ #ifndef sv_catpvf_mg # ifdef PERL_IMPLICIT_CONTEXT # define sv_catpvf_mg Perl_sv_catpvf_mg_nocontext # else # define sv_catpvf_mg Perl_sv_catpvf_mg # endif #endif #if (PERL_BCDVERSION >= 0x5004000) && !defined(sv_vcatpvf_mg) # define sv_vcatpvf_mg(sv, pat, args) \ STMT_START { \ sv_vcatpvfn(sv, pat, strlen(pat), args, Null(SV**), 0, Null(bool*)); \ SvSETMAGIC(sv); \ } STMT_END #endif #if (PERL_BCDVERSION >= 0x5004000) && !defined(sv_setpvf_mg) #if defined(NEED_sv_setpvf_mg) static void DPPP_(my_sv_setpvf_mg)(pTHX_ SV * const sv, const char * const pat, ...); static #else extern void DPPP_(my_sv_setpvf_mg)(pTHX_ SV * const sv, const char * const pat, ...); #endif #if defined(NEED_sv_setpvf_mg) || defined(NEED_sv_setpvf_mg_GLOBAL) #define Perl_sv_setpvf_mg DPPP_(my_sv_setpvf_mg) void DPPP_(my_sv_setpvf_mg)(pTHX_ SV * const sv, const char * const pat, ...) { va_list args; va_start(args, pat); sv_vsetpvfn(sv, pat, strlen(pat), &args, Null(SV**), 0, Null(bool*)); SvSETMAGIC(sv); va_end(args); } #endif #endif #ifdef PERL_IMPLICIT_CONTEXT #if (PERL_BCDVERSION >= 0x5004000) && !defined(sv_setpvf_mg_nocontext) #if defined(NEED_sv_setpvf_mg_nocontext) static void DPPP_(my_sv_setpvf_mg_nocontext)(SV * const sv, const char * const pat, ...); static #else extern void DPPP_(my_sv_setpvf_mg_nocontext)(SV * const sv, const char * const pat, ...); #endif #if defined(NEED_sv_setpvf_mg_nocontext) || defined(NEED_sv_setpvf_mg_nocontext_GLOBAL) #define sv_setpvf_mg_nocontext DPPP_(my_sv_setpvf_mg_nocontext) #define Perl_sv_setpvf_mg_nocontext DPPP_(my_sv_setpvf_mg_nocontext) void DPPP_(my_sv_setpvf_mg_nocontext)(SV * const sv, const char * const pat, ...) { dTHX; va_list args; va_start(args, pat); sv_vsetpvfn(sv, pat, strlen(pat), &args, Null(SV**), 0, Null(bool*)); SvSETMAGIC(sv); va_end(args); } #endif #endif #endif /* sv_setpvf_mg depends on sv_setpvf_mg_nocontext */ #ifndef sv_setpvf_mg # ifdef PERL_IMPLICIT_CONTEXT # define sv_setpvf_mg Perl_sv_setpvf_mg_nocontext # else # define sv_setpvf_mg Perl_sv_setpvf_mg # endif #endif #if (PERL_BCDVERSION >= 0x5004000) && !defined(sv_vsetpvf_mg) # define sv_vsetpvf_mg(sv, pat, args) \ STMT_START { \ sv_vsetpvfn(sv, pat, strlen(pat), args, Null(SV**), 0, Null(bool*)); \ SvSETMAGIC(sv); \ } STMT_END #endif /* Hint: sv_2pv_nolen * Use the SvPV_nolen() or SvPV_nolen_const() macros instead of sv_2pv_nolen(). */ #ifndef sv_2pv_nolen # define sv_2pv_nolen(sv) SvPV_nolen(sv) #endif #ifdef SvPVbyte /* Hint: SvPVbyte * Does not work in perl-5.6.1, ppport.h implements a version * borrowed from perl-5.7.3. */ #if (PERL_BCDVERSION < 0x5007000) #ifndef sv_2pvbyte # define sv_2pvbyte(sv, lp) (sv_utf8_downgrade((sv), 0), SvPV((sv), *(lp))) #endif /* Hint: sv_2pvbyte * Use the SvPVbyte() macro instead of sv_2pvbyte(). */ /* Replace sv_2pvbyte with SvPVbyte */ #undef SvPVbyte #define SvPVbyte(sv, lp) \ ((SvFLAGS(sv) & (SVf_POK|SVf_UTF8)) == (SVf_POK) \ ? ((lp = SvCUR(sv)), SvPVX(sv)) : sv_2pvbyte(sv, &lp)) #endif #else # define SvPVbyte SvPV # define sv_2pvbyte sv_2pv #endif #ifndef sv_2pvbyte_nolen # define sv_2pvbyte_nolen(sv) sv_2pv_nolen(sv) #endif /* Hint: sv_pvn * Always use the SvPV() macro instead of sv_pvn(). */ /* Replace sv_pvn with SvPV */ /* Hint: sv_pvn_force * Always use the SvPV_force() macro instead of sv_pvn_force(). */ /* Replace sv_pvn_force with SvPV_force */ /* If these are undefined, they're not handled by the core anyway */ #ifndef SV_IMMEDIATE_UNREF # define SV_IMMEDIATE_UNREF 0 #endif #ifndef SV_GMAGIC # define SV_GMAGIC 0 #endif #ifndef SV_COW_DROP_PV # define SV_COW_DROP_PV 0 #endif #ifndef SV_UTF8_NO_ENCODING # define SV_UTF8_NO_ENCODING 0 #endif #ifndef SV_CONST_RETURN # define SV_CONST_RETURN 0 #endif #ifndef SV_MUTABLE_RETURN # define SV_MUTABLE_RETURN 0 #endif #ifndef SV_SMAGIC # define SV_SMAGIC 0 #endif #ifndef SV_HAS_TRAILING_NUL # define SV_HAS_TRAILING_NUL 0 #endif #ifndef SV_COW_SHARED_HASH_KEYS # define SV_COW_SHARED_HASH_KEYS 0 #endif #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) #ifndef sv_2pv_flags # define sv_2pv_flags(sv, lp, flags) ({ SV *_sv = (sv); const I32 _flags = (flags); STRLEN *_lp = lp; _lp = _lp ? : &PL_na; (!(_flags & SV_GMAGIC) && SvGMAGICAL(_sv)) ? ({ char *_pv; SvGMAGICAL_off(_sv); _pv = sv_2pv(_sv, _lp); SvGMAGICAL_on(_sv); _pv; }) : sv_2pv(_sv, _lp); }) #endif #ifndef sv_pvn_force_flags # define sv_pvn_force_flags(sv, lp, flags) ({ SV *_sv = (sv); const I32 _flags = (flags); STRLEN *_lp = lp; _lp = _lp ? : &PL_na; (!(_flags & SV_GMAGIC) && SvGMAGICAL(_sv)) ? ({ char *_pv; SvGMAGICAL_off(_sv); _pv = sv_pvn_force(_sv, _lp); SvGMAGICAL_on(_sv); _pv; }) : sv_pvn_force(_sv, _lp); }) #endif #else #ifndef sv_2pv_flags # define sv_2pv_flags(sv, lp, flags) ((PL_Sv = (sv)), (!((flags) & SV_GMAGIC) && SvGMAGICAL(PL_Sv)) ? (SvGMAGICAL_off(PL_Sv), (PL_Xpv = (XPV *)sv_2pv(PL_Sv, (lp) ? (lp) : &PL_na)), SvGMAGICAL_on(PL_Sv), (char *)PL_Xpv) : sv_2pv(PL_Sv, (lp) ? (lp) : &PL_na)) #endif #ifndef sv_pvn_force_flags # define sv_pvn_force_flags(sv, lp, flags) ((PL_Sv = (sv)), (!((flags) & SV_GMAGIC) && SvGMAGICAL(PL_Sv)) ? (SvGMAGICAL_off(PL_Sv), (PL_Xpv = (XPV *)sv_pvn_force(PL_Sv, (lp) ? (lp) : &PL_na)), SvGMAGICAL_on(PL_Sv), (char *)PL_Xpv) : sv_pvn_force(PL_Sv, (lp) ? (lp) : &PL_na)) #endif #endif #if (PERL_BCDVERSION < 0x5008008) || ( (PERL_BCDVERSION >= 0x5009000) && (PERL_BCDVERSION < 0x5009003) ) # define D_PPP_SVPV_NOLEN_LP_ARG &PL_na #else # define D_PPP_SVPV_NOLEN_LP_ARG 0 #endif #ifndef SvPV_const # define SvPV_const(sv, lp) SvPV_flags_const(sv, lp, SV_GMAGIC) #endif #ifndef SvPV_mutable # define SvPV_mutable(sv, lp) SvPV_flags_mutable(sv, lp, SV_GMAGIC) #endif #ifndef SvPV_flags # define SvPV_flags(sv, lp, flags) \ ((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \ ? ((lp = SvCUR(sv)), SvPVX(sv)) : sv_2pv_flags(sv, &lp, flags)) #endif #ifndef SvPV_flags_const # define SvPV_flags_const(sv, lp, flags) \ ((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \ ? ((lp = SvCUR(sv)), SvPVX_const(sv)) : \ (const char*) sv_2pv_flags(sv, &lp, flags|SV_CONST_RETURN)) #endif #ifndef SvPV_flags_const_nolen # define SvPV_flags_const_nolen(sv, flags) \ ((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \ ? SvPVX_const(sv) : \ (const char*) sv_2pv_flags(sv, D_PPP_SVPV_NOLEN_LP_ARG, flags|SV_CONST_RETURN)) #endif #ifndef SvPV_flags_mutable # define SvPV_flags_mutable(sv, lp, flags) \ ((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \ ? ((lp = SvCUR(sv)), SvPVX_mutable(sv)) : \ sv_2pv_flags(sv, &lp, flags|SV_MUTABLE_RETURN)) #endif #ifndef SvPV_force # define SvPV_force(sv, lp) SvPV_force_flags(sv, lp, SV_GMAGIC) #endif #ifndef SvPV_force_nolen # define SvPV_force_nolen(sv) SvPV_force_flags_nolen(sv, SV_GMAGIC) #endif #ifndef SvPV_force_mutable # define SvPV_force_mutable(sv, lp) SvPV_force_flags_mutable(sv, lp, SV_GMAGIC) #endif #ifndef SvPV_force_nomg # define SvPV_force_nomg(sv, lp) SvPV_force_flags(sv, lp, 0) #endif #ifndef SvPV_force_nomg_nolen # define SvPV_force_nomg_nolen(sv) SvPV_force_flags_nolen(sv, 0) #endif #ifndef SvPV_force_flags # define SvPV_force_flags(sv, lp, flags) \ ((SvFLAGS(sv) & (SVf_POK|SVf_THINKFIRST)) == SVf_POK \ ? ((lp = SvCUR(sv)), SvPVX(sv)) : sv_pvn_force_flags(sv, &lp, flags)) #endif #ifndef SvPV_force_flags_nolen # define SvPV_force_flags_nolen(sv, flags) \ ((SvFLAGS(sv) & (SVf_POK|SVf_THINKFIRST)) == SVf_POK \ ? SvPVX(sv) : sv_pvn_force_flags(sv, D_PPP_SVPV_NOLEN_LP_ARG, flags)) #endif #ifndef SvPV_force_flags_mutable # define SvPV_force_flags_mutable(sv, lp, flags) \ ((SvFLAGS(sv) & (SVf_POK|SVf_THINKFIRST)) == SVf_POK \ ? ((lp = SvCUR(sv)), SvPVX_mutable(sv)) \ : sv_pvn_force_flags(sv, &lp, flags|SV_MUTABLE_RETURN)) #endif #ifndef SvPV_nolen # define SvPV_nolen(sv) \ ((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \ ? SvPVX(sv) : sv_2pv_flags(sv, D_PPP_SVPV_NOLEN_LP_ARG, SV_GMAGIC)) #endif #ifndef SvPV_nolen_const # define SvPV_nolen_const(sv) \ ((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \ ? SvPVX_const(sv) : sv_2pv_flags(sv, D_PPP_SVPV_NOLEN_LP_ARG, SV_GMAGIC|SV_CONST_RETURN)) #endif #ifndef SvPV_nomg # define SvPV_nomg(sv, lp) SvPV_flags(sv, lp, 0) #endif #ifndef SvPV_nomg_const # define SvPV_nomg_const(sv, lp) SvPV_flags_const(sv, lp, 0) #endif #ifndef SvPV_nomg_const_nolen # define SvPV_nomg_const_nolen(sv) SvPV_flags_const_nolen(sv, 0) #endif #ifndef SvPV_nomg_nolen # define SvPV_nomg_nolen(sv) ((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \ ? SvPVX(sv) : sv_2pv_flags(sv, D_PPP_SVPV_NOLEN_LP_ARG, 0)) #endif #ifndef SvPV_renew # define SvPV_renew(sv,n) STMT_START { SvLEN_set(sv, n); \ SvPV_set((sv), (char *) saferealloc( \ (Malloc_t)SvPVX(sv), (MEM_SIZE)((n)))); \ } STMT_END #endif #ifndef WARN_ALL # define WARN_ALL 0 #endif #ifndef WARN_CLOSURE # define WARN_CLOSURE 1 #endif #ifndef WARN_DEPRECATED # define WARN_DEPRECATED 2 #endif #ifndef WARN_EXITING # define WARN_EXITING 3 #endif #ifndef WARN_GLOB # define WARN_GLOB 4 #endif #ifndef WARN_IO # define WARN_IO 5 #endif #ifndef WARN_CLOSED # define WARN_CLOSED 6 #endif #ifndef WARN_EXEC # define WARN_EXEC 7 #endif #ifndef WARN_LAYER # define WARN_LAYER 8 #endif #ifndef WARN_NEWLINE # define WARN_NEWLINE 9 #endif #ifndef WARN_PIPE # define WARN_PIPE 10 #endif #ifndef WARN_UNOPENED # define WARN_UNOPENED 11 #endif #ifndef WARN_MISC # define WARN_MISC 12 #endif #ifndef WARN_NUMERIC # define WARN_NUMERIC 13 #endif #ifndef WARN_ONCE # define WARN_ONCE 14 #endif #ifndef WARN_OVERFLOW # define WARN_OVERFLOW 15 #endif #ifndef WARN_PACK # define WARN_PACK 16 #endif #ifndef WARN_PORTABLE # define WARN_PORTABLE 17 #endif #ifndef WARN_RECURSION # define WARN_RECURSION 18 #endif #ifndef WARN_REDEFINE # define WARN_REDEFINE 19 #endif #ifndef WARN_REGEXP # define WARN_REGEXP 20 #endif #ifndef WARN_SEVERE # define WARN_SEVERE 21 #endif #ifndef WARN_DEBUGGING # define WARN_DEBUGGING 22 #endif #ifndef WARN_INPLACE # define WARN_INPLACE 23 #endif #ifndef WARN_INTERNAL # define WARN_INTERNAL 24 #endif #ifndef WARN_MALLOC # define WARN_MALLOC 25 #endif #ifndef WARN_SIGNAL # define WARN_SIGNAL 26 #endif #ifndef WARN_SUBSTR # define WARN_SUBSTR 27 #endif #ifndef WARN_SYNTAX # define WARN_SYNTAX 28 #endif #ifndef WARN_AMBIGUOUS # define WARN_AMBIGUOUS 29 #endif #ifndef WARN_BAREWORD # define WARN_BAREWORD 30 #endif #ifndef WARN_DIGIT # define WARN_DIGIT 31 #endif #ifndef WARN_PARENTHESIS # define WARN_PARENTHESIS 32 #endif #ifndef WARN_PRECEDENCE # define WARN_PRECEDENCE 33 #endif #ifndef WARN_PRINTF # define WARN_PRINTF 34 #endif #ifndef WARN_PROTOTYPE # define WARN_PROTOTYPE 35 #endif #ifndef WARN_QW # define WARN_QW 36 #endif #ifndef WARN_RESERVED # define WARN_RESERVED 37 #endif #ifndef WARN_SEMICOLON # define WARN_SEMICOLON 38 #endif #ifndef WARN_TAINT # define WARN_TAINT 39 #endif #ifndef WARN_THREADS # define WARN_THREADS 40 #endif #ifndef WARN_UNINITIALIZED # define WARN_UNINITIALIZED 41 #endif #ifndef WARN_UNPACK # define WARN_UNPACK 42 #endif #ifndef WARN_UNTIE # define WARN_UNTIE 43 #endif #ifndef WARN_UTF8 # define WARN_UTF8 44 #endif #ifndef WARN_VOID # define WARN_VOID 45 #endif #ifndef WARN_ASSERTIONS # define WARN_ASSERTIONS 46 #endif #ifndef packWARN # define packWARN(a) (a) #endif #ifndef ckWARN # ifdef G_WARN_ON # define ckWARN(a) (PL_dowarn & G_WARN_ON) # else # define ckWARN(a) PL_dowarn # endif #endif #if (PERL_BCDVERSION >= 0x5004000) && !defined(warner) #if defined(NEED_warner) static void DPPP_(my_warner)(U32 err, const char * pat, ...); static #else extern void DPPP_(my_warner)(U32 err, const char * pat, ...); #endif #if defined(NEED_warner) || defined(NEED_warner_GLOBAL) #define Perl_warner DPPP_(my_warner) void DPPP_(my_warner)(U32 err, const char *pat, ...) { SV *sv; va_list args; PERL_UNUSED_ARG(err); va_start(args, pat); sv = vnewSVpvf(pat, &args); va_end(args); sv_2mortal(sv); warn("%s", SvPV_nolen(sv)); } #define warner Perl_warner #define Perl_warner_nocontext Perl_warner #endif #endif #ifndef IVdf # if IVSIZE == LONGSIZE # define IVdf "ld" # define UVuf "lu" # define UVof "lo" # define UVxf "lx" # define UVXf "lX" # elif IVSIZE == INTSIZE # define IVdf "d" # define UVuf "u" # define UVof "o" # define UVxf "x" # define UVXf "X" # else # error "cannot define IV/UV formats" # endif #endif #ifndef NVef # if defined(USE_LONG_DOUBLE) && defined(HAS_LONG_DOUBLE) && \ defined(PERL_PRIfldbl) && (PERL_BCDVERSION != 0x5006000) /* Not very likely, but let's try anyway. */ # define NVef PERL_PRIeldbl # define NVff PERL_PRIfldbl # define NVgf PERL_PRIgldbl # else # define NVef "e" # define NVff "f" # define NVgf "g" # endif #endif #ifndef sv_setuv # define sv_setuv(sv, uv) \ STMT_START { \ UV TeMpUv = uv; \ if (TeMpUv <= IV_MAX) \ sv_setiv(sv, TeMpUv); \ else \ sv_setnv(sv, (double)TeMpUv); \ } STMT_END #endif #ifndef newSVuv # define newSVuv(uv) ((uv) <= IV_MAX ? newSViv((IV)uv) : newSVnv((NV)uv)) #endif #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) #ifndef sv_2uv # define sv_2uv(sv) ({ SV *_sv = (sv); (UV) (SvNOK(_sv) ? SvNV(_sv) : sv_2nv(_sv)); }) #endif #else #ifndef sv_2uv # define sv_2uv(sv) ((PL_Sv = (sv)), (UV) (SvNOK(PL_Sv) ? SvNV(PL_Sv) : sv_2nv(PL_Sv))) #endif #endif #ifndef SvUVX # define SvUVX(sv) ((UV)SvIVX(sv)) #endif #ifndef SvUVXx # define SvUVXx(sv) SvUVX(sv) #endif #ifndef SvUV # define SvUV(sv) (SvIOK(sv) ? SvUVX(sv) : sv_2uv(sv)) #endif #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) #ifndef SvUVx # define SvUVx(sv) ({ SV *_sv = (sv)); SvUV(_sv); }) #endif #else #ifndef SvUVx # define SvUVx(sv) ((PL_Sv = (sv)), SvUV(PL_Sv)) #endif #endif /* Hint: sv_uv * Always use the SvUVx() macro instead of sv_uv(). */ /* Replace sv_uv with SvUVx */ #ifndef sv_uv # define sv_uv(sv) SvUVx(sv) #endif #if !defined(SvUOK) && defined(SvIOK_UV) # define SvUOK(sv) SvIOK_UV(sv) #endif #ifndef XST_mUV # define XST_mUV(i,v) (ST(i) = sv_2mortal(newSVuv(v)) ) #endif #ifndef XSRETURN_UV # define XSRETURN_UV(v) STMT_START { XST_mUV(0,v); XSRETURN(1); } STMT_END #endif #ifndef PUSHu # define PUSHu(u) STMT_START { sv_setuv(TARG, (UV)(u)); PUSHTARG; } STMT_END #endif #ifndef XPUSHu # define XPUSHu(u) STMT_START { sv_setuv(TARG, (UV)(u)); XPUSHTARG; } STMT_END #endif #if !defined(my_strnlen) #if defined(NEED_my_strnlen) static Size_t DPPP_(my_my_strnlen)(const char * str, Size_t maxlen); static #else extern Size_t DPPP_(my_my_strnlen)(const char * str, Size_t maxlen); #endif #if defined(NEED_my_strnlen) || defined(NEED_my_strnlen_GLOBAL) #define my_strnlen DPPP_(my_my_strnlen) #define Perl_my_strnlen DPPP_(my_my_strnlen) Size_t DPPP_(my_my_strnlen)(const char *str, Size_t maxlen) { const char *p = str; while(maxlen-- && *p) p++; return p - str; } #endif #endif #ifdef HAS_MEMCMP #ifndef memNE # define memNE(s1,s2,l) (memcmp(s1,s2,l)) #endif #ifndef memEQ # define memEQ(s1,s2,l) (!memcmp(s1,s2,l)) #endif #else #ifndef memNE # define memNE(s1,s2,l) (bcmp(s1,s2,l)) #endif #ifndef memEQ # define memEQ(s1,s2,l) (!bcmp(s1,s2,l)) #endif #endif #ifndef memEQs # define memEQs(s1, l, s2) \ (sizeof(s2)-1 == l && memEQ(s1, (s2 ""), (sizeof(s2)-1))) #endif #ifndef memNEs # define memNEs(s1, l, s2) !memEQs(s1, l, s2) #endif #ifndef memCHRs # define memCHRs(s, c) ((const char *) memchr("" s "" , c, sizeof(s)-1)) #endif #ifndef MoveD # define MoveD(s,d,n,t) memmove((char*)(d),(char*)(s), (n) * sizeof(t)) #endif #ifndef CopyD # define CopyD(s,d,n,t) memcpy((char*)(d),(char*)(s), (n) * sizeof(t)) #endif #ifdef HAS_MEMSET #ifndef ZeroD # define ZeroD(d,n,t) memzero((char*)(d), (n) * sizeof(t)) #endif #else #ifndef ZeroD # define ZeroD(d,n,t) ((void)memzero((char*)(d), (n) * sizeof(t)), d) #endif #endif #ifndef PoisonWith # define PoisonWith(d,n,t,b) (void)memset((char*)(d), (U8)(b), (n) * sizeof(t)) #endif #ifndef PoisonNew # define PoisonNew(d,n,t) PoisonWith(d,n,t,0xAB) #endif #ifndef PoisonFree # define PoisonFree(d,n,t) PoisonWith(d,n,t,0xEF) #endif #ifndef Poison # define Poison(d,n,t) PoisonFree(d,n,t) #endif #ifndef Newx # define Newx(v,n,t) New(0,v,n,t) #endif #ifndef Newxc # define Newxc(v,n,t,c) Newc(0,v,n,t,c) #endif #ifndef Newxz # define Newxz(v,n,t) Newz(0,v,n,t) #endif #ifdef NEED_mess_sv #define NEED_mess #endif #ifdef NEED_mess #define NEED_mess_nocontext #define NEED_vmess #endif #ifndef croak_sv #if (PERL_BCDVERSION >= 0x5007003) || ( (PERL_BCDVERSION >= 0x5006001) && (PERL_BCDVERSION < 0x5007000) ) # if ( (PERL_BCDVERSION >= 0x5008000) && (PERL_BCDVERSION < 0x5008009) ) || ( (PERL_BCDVERSION >= 0x5009000) && (PERL_BCDVERSION < 0x5010001) ) # define D_PPP_FIX_UTF8_ERRSV_FOR_SV(sv) \ STMT_START { \ SV *_errsv = ERRSV; \ SvFLAGS(_errsv) = (SvFLAGS(_errsv) & ~SVf_UTF8) | \ (SvFLAGS(sv) & SVf_UTF8); \ } STMT_END # else # define D_PPP_FIX_UTF8_ERRSV_FOR_SV(sv) STMT_START {} STMT_END # endif # define croak_sv(sv) \ STMT_START { \ SV *_sv = (sv); \ if (SvROK(_sv)) { \ sv_setsv(ERRSV, _sv); \ croak(NULL); \ } else { \ D_PPP_FIX_UTF8_ERRSV_FOR_SV(_sv); \ croak("%" SVf, SVfARG(_sv)); \ } \ } STMT_END #elif (PERL_BCDVERSION >= 0x5004000) # define croak_sv(sv) croak("%" SVf, SVfARG(sv)) #else # define croak_sv(sv) croak("%s", SvPV_nolen(sv)) #endif #endif #ifndef die_sv #if defined(NEED_die_sv) static OP * DPPP_(my_die_sv)(pTHX_ SV * baseex); static #else extern OP * DPPP_(my_die_sv)(pTHX_ SV * baseex); #endif #if defined(NEED_die_sv) || defined(NEED_die_sv_GLOBAL) #ifdef die_sv # undef die_sv #endif #define die_sv(a) DPPP_(my_die_sv)(aTHX_ a) #define Perl_die_sv DPPP_(my_die_sv) OP * DPPP_(my_die_sv)(pTHX_ SV *baseex) { croak_sv(baseex); return (OP *)NULL; } #endif #endif #ifndef warn_sv #if (PERL_BCDVERSION >= 0x5004000) # define warn_sv(sv) warn("%" SVf, SVfARG(sv)) #else # define warn_sv(sv) warn("%s", SvPV_nolen(sv)) #endif #endif #if ! defined vmess && (PERL_BCDVERSION >= 0x5004000) # if defined(NEED_vmess) static SV * DPPP_(my_vmess)(pTHX_ const char * pat, va_list * args); static #else extern SV * DPPP_(my_vmess)(pTHX_ const char * pat, va_list * args); #endif #if defined(NEED_vmess) || defined(NEED_vmess_GLOBAL) #ifdef vmess # undef vmess #endif #define vmess(a,b) DPPP_(my_vmess)(aTHX_ a,b) #define Perl_vmess DPPP_(my_vmess) SV* DPPP_(my_vmess)(pTHX_ const char* pat, va_list* args) { mess(pat, args); return PL_mess_sv; } # endif #endif #if (PERL_BCDVERSION < 0x5006000) && (PERL_BCDVERSION >= 0x5004000) #undef mess #endif #if !defined(mess_nocontext) && !defined(Perl_mess_nocontext) && (PERL_BCDVERSION >= 0x5004000) #if defined(NEED_mess_nocontext) static SV * DPPP_(my_mess_nocontext)(const char * pat, ...); static #else extern SV * DPPP_(my_mess_nocontext)(const char * pat, ...); #endif #if defined(NEED_mess_nocontext) || defined(NEED_mess_nocontext_GLOBAL) #define mess_nocontext DPPP_(my_mess_nocontext) #define Perl_mess_nocontext DPPP_(my_mess_nocontext) SV* DPPP_(my_mess_nocontext)(const char* pat, ...) { dTHX; SV *sv; va_list args; va_start(args, pat); sv = vmess(pat, &args); va_end(args); return sv; } #endif #endif #ifndef mess #if defined(NEED_mess) static SV * DPPP_(my_mess)(pTHX_ const char * pat, ...); static #else extern SV * DPPP_(my_mess)(pTHX_ const char * pat, ...); #endif #if defined(NEED_mess) || defined(NEED_mess_GLOBAL) #define Perl_mess DPPP_(my_mess) SV* DPPP_(my_mess)(pTHX_ const char* pat, ...) { SV *sv; va_list args; va_start(args, pat); sv = vmess(pat, &args); va_end(args); return sv; } #ifdef mess_nocontext #define mess mess_nocontext #else #define mess Perl_mess_nocontext #endif #endif #endif #if ! defined mess_sv && (PERL_BCDVERSION >= 0x5004000) #if defined(NEED_mess_sv) static SV * DPPP_(my_mess_sv)(pTHX_ SV * basemsg, bool consume); static #else extern SV * DPPP_(my_mess_sv)(pTHX_ SV * basemsg, bool consume); #endif #if defined(NEED_mess_sv) || defined(NEED_mess_sv_GLOBAL) #ifdef mess_sv # undef mess_sv #endif #define mess_sv(a,b) DPPP_(my_mess_sv)(aTHX_ a,b) #define Perl_mess_sv DPPP_(my_mess_sv) SV * DPPP_(my_mess_sv)(pTHX_ SV *basemsg, bool consume) { SV *tmp; SV *ret; if (SvPOK(basemsg) && SvCUR(basemsg) && *(SvEND(basemsg)-1) == '\n') { if (consume) return basemsg; ret = mess(""); SvSetSV_nosteal(ret, basemsg); return ret; } if (consume) { sv_catsv(basemsg, mess("")); return basemsg; } ret = mess(""); tmp = newSVsv(ret); SvSetSV_nosteal(ret, basemsg); sv_catsv(ret, tmp); sv_dec(tmp); return ret; } #endif #endif #ifndef warn_nocontext #define warn_nocontext warn #endif #ifndef croak_nocontext #define croak_nocontext croak #endif #ifndef croak_no_modify #define croak_no_modify() croak_nocontext("%s", PL_no_modify) #define Perl_croak_no_modify() croak_no_modify() #endif #ifndef croak_memory_wrap #if (PERL_BCDVERSION >= 0x5009002) || ( (PERL_BCDVERSION >= 0x5008006) && (PERL_BCDVERSION < 0x5009000) ) # define croak_memory_wrap() croak_nocontext("%s", PL_memory_wrap) #else # define croak_memory_wrap() croak_nocontext("panic: memory wrap") #endif #endif #ifndef croak_xs_usage #if defined(NEED_croak_xs_usage) static void DPPP_(my_croak_xs_usage)(const CV * const cv, const char * const params); static #else extern void DPPP_(my_croak_xs_usage)(const CV * const cv, const char * const params); #endif #if defined(NEED_croak_xs_usage) || defined(NEED_croak_xs_usage_GLOBAL) #define croak_xs_usage DPPP_(my_croak_xs_usage) #define Perl_croak_xs_usage DPPP_(my_croak_xs_usage) void DPPP_(my_croak_xs_usage)(const CV *const cv, const char *const params) { dTHX; const GV *const gv = CvGV(cv); #ifdef PERL_ARGS_ASSERT_CROAK_XS_USAGE PERL_ARGS_ASSERT_CROAK_XS_USAGE; #else assert(cv); assert(params); #endif if (gv) { const char *const gvname = GvNAME(gv); const HV *const stash = GvSTASH(gv); const char *const hvname = stash ? HvNAME(stash) : NULL; if (hvname) croak("Usage: %s::%s(%s)", hvname, gvname, params); else croak("Usage: %s(%s)", gvname, params); } else { /* Pants. I don't think that it should be possible to get here. */ croak("Usage: CODE(0x%" UVxf ")(%s)", PTR2UV(cv), params); } } #endif #endif #ifndef mPUSHs # define mPUSHs(s) PUSHs(sv_2mortal(s)) #endif #ifndef PUSHmortal # define PUSHmortal PUSHs(sv_newmortal()) #endif #ifndef mPUSHp # define mPUSHp(p,l) sv_setpvn(PUSHmortal, (p), (l)) #endif #ifndef mPUSHn # define mPUSHn(n) sv_setnv(PUSHmortal, (NV)(n)) #endif #ifndef mPUSHi # define mPUSHi(i) sv_setiv(PUSHmortal, (IV)(i)) #endif #ifndef mPUSHu # define mPUSHu(u) sv_setuv(PUSHmortal, (UV)(u)) #endif #ifndef mXPUSHs # define mXPUSHs(s) XPUSHs(sv_2mortal(s)) #endif #ifndef XPUSHmortal # define XPUSHmortal XPUSHs(sv_newmortal()) #endif #ifndef mXPUSHp # define mXPUSHp(p,l) STMT_START { EXTEND(sp,1); sv_setpvn(PUSHmortal, (p), (l)); } STMT_END #endif #ifndef mXPUSHn # define mXPUSHn(n) STMT_START { EXTEND(sp,1); sv_setnv(PUSHmortal, (NV)(n)); } STMT_END #endif #ifndef mXPUSHi # define mXPUSHi(i) STMT_START { EXTEND(sp,1); sv_setiv(PUSHmortal, (IV)(i)); } STMT_END #endif #ifndef mXPUSHu # define mXPUSHu(u) STMT_START { EXTEND(sp,1); sv_setuv(PUSHmortal, (UV)(u)); } STMT_END #endif /* Replace: 1 */ #ifndef call_sv # define call_sv perl_call_sv #endif #ifndef call_pv # define call_pv perl_call_pv #endif #ifndef call_argv # define call_argv perl_call_argv #endif #ifndef call_method # define call_method perl_call_method #endif #ifndef eval_sv # define eval_sv perl_eval_sv #endif #if (PERL_BCDVERSION >= 0x5003098) && (PERL_BCDVERSION < 0x5006000) #ifndef eval_pv # define eval_pv perl_eval_pv #endif #endif /* Replace: 0 */ #if (PERL_BCDVERSION < 0x5006000) #ifndef Perl_eval_sv # define Perl_eval_sv perl_eval_sv #endif #if (PERL_BCDVERSION >= 0x5003098) #ifndef Perl_eval_pv # define Perl_eval_pv perl_eval_pv #endif #endif #endif #ifndef PERL_LOADMOD_DENY # define PERL_LOADMOD_DENY 0x1 #endif #ifndef PERL_LOADMOD_NOIMPORT # define PERL_LOADMOD_NOIMPORT 0x2 #endif #ifndef PERL_LOADMOD_IMPORT_OPS # define PERL_LOADMOD_IMPORT_OPS 0x4 #endif #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) # define D_PPP_CROAK_IF_ERROR(cond) ({ SV *_errsv; ((cond) && (_errsv = ERRSV) && (SvROK(_errsv) || SvTRUE(_errsv)) && (croak_sv(_errsv), 1)); }) #else # define D_PPP_CROAK_IF_ERROR(cond) ((cond) && (SvROK(ERRSV) || SvTRUE(ERRSV)) && (croak_sv(ERRSV), 1)) #endif #ifndef G_METHOD # define G_METHOD 64 # ifdef call_sv # undef call_sv # endif # if (PERL_BCDVERSION < 0x5006000) # define call_sv(sv, flags) ((flags) & G_METHOD ? perl_call_method((char *) SvPV_nolen_const(sv), \ (flags) & ~G_METHOD) : perl_call_sv(sv, flags)) # else # define call_sv(sv, flags) ((flags) & G_METHOD ? Perl_call_method(aTHX_ (char *) SvPV_nolen_const(sv), \ (flags) & ~G_METHOD) : Perl_call_sv(aTHX_ sv, flags)) # endif #endif #ifndef G_RETHROW # define G_RETHROW 8192 # ifdef eval_sv # undef eval_sv # endif # if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) # define eval_sv(sv, flags) ({ I32 _flags = (flags); I32 _ret = Perl_eval_sv(aTHX_ sv, (_flags & ~G_RETHROW)); D_PPP_CROAK_IF_ERROR(_flags & G_RETHROW); _ret; }) # else # define eval_sv(sv, flags) ((PL_na = Perl_eval_sv(aTHX_ sv, ((flags) & ~G_RETHROW))), D_PPP_CROAK_IF_ERROR((flags) & G_RETHROW), (I32)PL_na) # endif #endif /* Older Perl versions have broken croak_on_error=1 */ #if (PERL_BCDVERSION < 0x5031002) # ifdef eval_pv # undef eval_pv # if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) # define eval_pv(p, croak_on_error) ({ SV *_sv = Perl_eval_pv(aTHX_ p, 0); D_PPP_CROAK_IF_ERROR(croak_on_error); _sv; }) # else # define eval_pv(p, croak_on_error) ((PL_Sv = Perl_eval_pv(aTHX_ p, 0)), D_PPP_CROAK_IF_ERROR(croak_on_error), PL_Sv) # endif # endif #endif /* This is backport for Perl 5.3.97d and older which do not provide perl_eval_pv */ #ifndef eval_pv #if defined(NEED_eval_pv) static SV * DPPP_(my_eval_pv)(const char * p, I32 croak_on_error); static #else extern SV * DPPP_(my_eval_pv)(const char * p, I32 croak_on_error); #endif #if defined(NEED_eval_pv) || defined(NEED_eval_pv_GLOBAL) #ifdef eval_pv # undef eval_pv #endif #define eval_pv(a,b) DPPP_(my_eval_pv)(aTHX_ a,b) #define Perl_eval_pv DPPP_(my_eval_pv) SV* DPPP_(my_eval_pv)(const char *p, I32 croak_on_error) { dSP; SV* sv = newSVpv(p, 0); PUSHMARK(sp); eval_sv(sv, G_SCALAR); SvREFCNT_dec(sv); SPAGAIN; sv = POPs; PUTBACK; D_PPP_CROAK_IF_ERROR(croak_on_error); return sv; } #endif #endif #if ! defined(vload_module) && defined(start_subparse) #if defined(NEED_vload_module) static void DPPP_(my_vload_module)(U32 flags, SV * name, SV * ver, va_list * args); static #else extern void DPPP_(my_vload_module)(U32 flags, SV * name, SV * ver, va_list * args); #endif #if defined(NEED_vload_module) || defined(NEED_vload_module_GLOBAL) #ifdef vload_module # undef vload_module #endif #define vload_module(a,b,c,d) DPPP_(my_vload_module)(aTHX_ a,b,c,d) #define Perl_vload_module DPPP_(my_vload_module) void DPPP_(my_vload_module)(U32 flags, SV *name, SV *ver, va_list *args) { dTHR; dVAR; OP *veop, *imop; OP * const modname = newSVOP(OP_CONST, 0, name); /* 5.005 has a somewhat hacky force_normal that doesn't croak on SvREADONLY() if PL_compling is true. Current perls take care in ck_require() to correctly turn off SvREADONLY before calling force_normal_flags(). This seems a better fix than fudging PL_compling */ SvREADONLY_off(((SVOP*)modname)->op_sv); modname->op_private |= OPpCONST_BARE; if (ver) { veop = newSVOP(OP_CONST, 0, ver); } else veop = NULL; if (flags & PERL_LOADMOD_NOIMPORT) { imop = sawparens(newNULLLIST()); } else if (flags & PERL_LOADMOD_IMPORT_OPS) { imop = va_arg(*args, OP*); } else { SV *sv; imop = NULL; sv = va_arg(*args, SV*); while (sv) { imop = append_elem(OP_LIST, imop, newSVOP(OP_CONST, 0, sv)); sv = va_arg(*args, SV*); } } { const line_t ocopline = PL_copline; COP * const ocurcop = PL_curcop; const int oexpect = PL_expect; utilize(!(flags & PERL_LOADMOD_DENY), start_subparse(FALSE, 0), #if (PERL_BCDVERSION > 0x5003000) veop, #endif modname, imop); PL_expect = oexpect; PL_copline = ocopline; PL_curcop = ocurcop; } } #endif #endif #ifndef load_module #if defined(NEED_load_module) static void DPPP_(my_load_module)(U32 flags, SV * name, SV * ver, ...); static #else extern void DPPP_(my_load_module)(U32 flags, SV * name, SV * ver, ...); #endif #if defined(NEED_load_module) || defined(NEED_load_module_GLOBAL) #ifdef load_module # undef load_module #endif #define load_module DPPP_(my_load_module) #define Perl_load_module DPPP_(my_load_module) void DPPP_(my_load_module)(U32 flags, SV *name, SV *ver, ...) { va_list args; va_start(args, ver); vload_module(flags, name, ver, &args); va_end(args); } #endif #endif #ifndef newRV_inc # define newRV_inc(sv) newRV(sv) /* Replace */ #endif #ifndef newRV_noinc #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) # define newRV_noinc(sv) ({ SV *_sv = (SV *)newRV((sv)); SvREFCNT_dec((sv)); _sv; }) #else # define newRV_noinc(sv) ((PL_Sv = (SV *)newRV((sv))), SvREFCNT_dec((sv)), PL_Sv) #endif #endif /* * Boilerplate macros for initializing and accessing interpreter-local * data from C. All statics in extensions should be reworked to use * this, if you want to make the extension thread-safe. See ext/re/re.xs * for an example of the use of these macros. * * Code that uses these macros is responsible for the following: * 1. #define MY_CXT_KEY to a unique string, e.g. "DynaLoader_guts" * 2. Declare a typedef named my_cxt_t that is a structure that contains * all the data that needs to be interpreter-local. * 3. Use the START_MY_CXT macro after the declaration of my_cxt_t. * 4. Use the MY_CXT_INIT macro such that it is called exactly once * (typically put in the BOOT: section). * 5. Use the members of the my_cxt_t structure everywhere as * MY_CXT.member. * 6. Use the dMY_CXT macro (a declaration) in all the functions that * access MY_CXT. */ #if defined(MULTIPLICITY) || defined(PERL_OBJECT) || \ defined(PERL_CAPI) || defined(PERL_IMPLICIT_CONTEXT) #ifndef START_MY_CXT /* This must appear in all extensions that define a my_cxt_t structure, * right after the definition (i.e. at file scope). The non-threads * case below uses it to declare the data as static. */ #define START_MY_CXT #if (PERL_BCDVERSION < 0x5004068) /* Fetches the SV that keeps the per-interpreter data. */ #define dMY_CXT_SV \ SV *my_cxt_sv = get_sv(MY_CXT_KEY, FALSE) #else /* >= perl5.004_68 */ #define dMY_CXT_SV \ SV *my_cxt_sv = *hv_fetch(PL_modglobal, MY_CXT_KEY, \ sizeof(MY_CXT_KEY)-1, TRUE) #endif /* < perl5.004_68 */ /* This declaration should be used within all functions that use the * interpreter-local data. */ #define dMY_CXT \ dMY_CXT_SV; \ my_cxt_t *my_cxtp = INT2PTR(my_cxt_t*,SvUV(my_cxt_sv)) /* Creates and zeroes the per-interpreter data. * (We allocate my_cxtp in a Perl SV so that it will be released when * the interpreter goes away.) */ #define MY_CXT_INIT \ dMY_CXT_SV; \ /* newSV() allocates one more than needed */ \ my_cxt_t *my_cxtp = (my_cxt_t*)SvPVX(newSV(sizeof(my_cxt_t)-1));\ Zero(my_cxtp, 1, my_cxt_t); \ sv_setuv(my_cxt_sv, PTR2UV(my_cxtp)) /* This macro must be used to access members of the my_cxt_t structure. * e.g. MYCXT.some_data */ #define MY_CXT (*my_cxtp) /* Judicious use of these macros can reduce the number of times dMY_CXT * is used. Use is similar to pTHX, aTHX etc. */ #define pMY_CXT my_cxt_t *my_cxtp #define pMY_CXT_ pMY_CXT, #define _pMY_CXT ,pMY_CXT #define aMY_CXT my_cxtp #define aMY_CXT_ aMY_CXT, #define _aMY_CXT ,aMY_CXT #endif /* START_MY_CXT */ #ifndef MY_CXT_CLONE /* Clones the per-interpreter data. */ #define MY_CXT_CLONE \ dMY_CXT_SV; \ my_cxt_t *my_cxtp = (my_cxt_t*)SvPVX(newSV(sizeof(my_cxt_t)-1));\ Copy(INT2PTR(my_cxt_t*, SvUV(my_cxt_sv)), my_cxtp, 1, my_cxt_t);\ sv_setuv(my_cxt_sv, PTR2UV(my_cxtp)) #endif #else /* single interpreter */ #ifndef START_MY_CXT #define START_MY_CXT static my_cxt_t my_cxt; #define dMY_CXT_SV dNOOP #define dMY_CXT dNOOP #define MY_CXT_INIT NOOP #define MY_CXT my_cxt #define pMY_CXT void #define pMY_CXT_ #define _pMY_CXT #define aMY_CXT #define aMY_CXT_ #define _aMY_CXT #endif /* START_MY_CXT */ #ifndef MY_CXT_CLONE #define MY_CXT_CLONE NOOP #endif #endif #ifndef SvREFCNT_inc # ifdef PERL_USE_GCC_BRACE_GROUPS # define SvREFCNT_inc(sv) \ ({ \ SV * const _sv = (SV*)(sv); \ if (_sv) \ (SvREFCNT(_sv))++; \ _sv; \ }) # else # define SvREFCNT_inc(sv) \ ((PL_Sv=(SV*)(sv)) ? (++(SvREFCNT(PL_Sv)),PL_Sv) : NULL) # endif #endif #ifndef SvREFCNT_inc_simple # ifdef PERL_USE_GCC_BRACE_GROUPS # define SvREFCNT_inc_simple(sv) \ ({ \ if (sv) \ (SvREFCNT(sv))++; \ (SV *)(sv); \ }) # else # define SvREFCNT_inc_simple(sv) \ ((sv) ? (SvREFCNT(sv)++,(SV*)(sv)) : NULL) # endif #endif #ifndef SvREFCNT_inc_NN # ifdef PERL_USE_GCC_BRACE_GROUPS # define SvREFCNT_inc_NN(sv) \ ({ \ SV * const _sv = (SV*)(sv); \ SvREFCNT(_sv)++; \ _sv; \ }) # else # define SvREFCNT_inc_NN(sv) \ (PL_Sv=(SV*)(sv),++(SvREFCNT(PL_Sv)),PL_Sv) # endif #endif #ifndef SvREFCNT_inc_void # ifdef PERL_USE_GCC_BRACE_GROUPS # define SvREFCNT_inc_void(sv) \ ({ \ SV * const _sv = (SV*)(sv); \ if (_sv) \ (void)(SvREFCNT(_sv)++); \ }) # else # define SvREFCNT_inc_void(sv) \ (void)((PL_Sv=(SV*)(sv)) ? ++(SvREFCNT(PL_Sv)) : 0) # endif #endif #ifndef SvREFCNT_inc_simple_void # define SvREFCNT_inc_simple_void(sv) STMT_START { if (sv) SvREFCNT(sv)++; } STMT_END #endif #ifndef SvREFCNT_inc_simple_NN # define SvREFCNT_inc_simple_NN(sv) (++SvREFCNT(sv), (SV*)(sv)) #endif #ifndef SvREFCNT_inc_void_NN # define SvREFCNT_inc_void_NN(sv) (void)(++SvREFCNT((SV*)(sv))) #endif #ifndef SvREFCNT_inc_simple_void_NN # define SvREFCNT_inc_simple_void_NN(sv) (void)(++SvREFCNT((SV*)(sv))) #endif #ifndef newSV_type #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) # define newSV_type(t) ({ SV *_sv = newSV(0); sv_upgrade(_sv, (t)); _sv; }) #else # define newSV_type(t) ((PL_Sv = newSV(0)), sv_upgrade(PL_Sv, (t)), PL_Sv) #endif #endif #if (PERL_BCDVERSION < 0x5006000) # define D_PPP_CONSTPV_ARG(x) ((char *) (x)) #else # define D_PPP_CONSTPV_ARG(x) (x) #endif #ifndef newSVpvn # define newSVpvn(data,len) ((data) \ ? ((len) ? newSVpv((data), (len)) : newSVpv("", 0)) \ : newSV(0)) #endif #ifndef newSVpvn_utf8 # define newSVpvn_utf8(s, len, u) newSVpvn_flags((s), (len), (u) ? SVf_UTF8 : 0) #endif #ifndef SVf_UTF8 # define SVf_UTF8 0 #endif #ifndef newSVpvn_flags #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) # define newSVpvn_flags(s, len, flags) ({ SV *_sv = newSVpvn(D_PPP_CONSTPV_ARG((s)), (len)); SvFLAGS(_sv) |= ((flags) & SVf_UTF8); ((flags) & SVs_TEMP) ? sv_2mortal(_sv) : _sv; }) #else # define newSVpvn_flags(s, len, flags) ((PL_Sv = newSVpvn(D_PPP_CONSTPV_ARG((s)), (len))), SvFLAGS(PL_Sv) |= ((flags) & SVf_UTF8), (((flags) & SVs_TEMP) ? sv_2mortal(PL_Sv) : PL_Sv)) #endif #endif #ifndef SV_NOSTEAL # define SV_NOSTEAL 16 #endif #if ( (PERL_BCDVERSION >= 0x5007003) && (PERL_BCDVERSION < 0x5008007) ) || ( (PERL_BCDVERSION >= 0x5009000) && (PERL_BCDVERSION < 0x5009002) ) #undef sv_setsv_flags #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) #define sv_setsv_flags(dstr, sstr, flags) \ STMT_START { \ if (((flags) & SV_NOSTEAL) && (sstr) && (SvFLAGS((SV *)(sstr)) & SVs_TEMP)) { \ SvTEMP_off((SV *)(sstr)); \ Perl_sv_setsv_flags(aTHX_ (dstr), (sstr), (flags) & ~SV_NOSTEAL); \ SvTEMP_on((SV *)(sstr)); \ } else { \ Perl_sv_setsv_flags(aTHX_ (dstr), (sstr), (flags) & ~SV_NOSTEAL); \ } \ } STMT_END #else ( \ (((flags) & SV_NOSTEAL) && (sstr) && (SvFLAGS((SV *)(sstr)) & SVs_TEMP)) ? ( \ SvTEMP_off((SV *)(sstr)), \ Perl_sv_setsv_flags(aTHX_ (dstr), (sstr), (flags) & ~SV_NOSTEAL), \ SvTEMP_on((SV *)(sstr)), \ 1 \ ) : ( \ Perl_sv_setsv_flags(aTHX_ (dstr), (sstr), (flags) & ~SV_NOSTEAL), \ 1 \ ) \ ) #endif #endif #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) #ifndef sv_setsv_flags # define sv_setsv_flags(dstr, sstr, flags) \ STMT_START { \ if (((flags) & SV_NOSTEAL) && (sstr) && (SvFLAGS((SV *)(sstr)) & SVs_TEMP)) { \ SvTEMP_off((SV *)(sstr)); \ if (!((flags) & SV_GMAGIC) && (sstr) && SvGMAGICAL((SV *)(sstr))) { \ SvGMAGICAL_off((SV *)(sstr)); \ sv_setsv((dstr), (sstr)); \ SvGMAGICAL_on((SV *)(sstr)); \ } else { \ sv_setsv((dstr), (sstr)); \ } \ SvTEMP_on((SV *)(sstr)); \ } else { \ if (!((flags) & SV_GMAGIC) && (sstr) && SvGMAGICAL((SV *)(sstr))) { \ SvGMAGICAL_off((SV *)(sstr)); \ sv_setsv((dstr), (sstr)); \ SvGMAGICAL_on((SV *)(sstr)); \ } else { \ sv_setsv((dstr), (sstr)); \ } \ } \ } STMT_END #endif #else #ifndef sv_setsv_flags # define sv_setsv_flags(dstr, sstr, flags) \ ( \ (((flags) & SV_NOSTEAL) && (sstr) && (SvFLAGS((SV *)(sstr)) & SVs_TEMP)) ? ( \ SvTEMP_off((SV *)(sstr)), \ (!((flags) & SV_GMAGIC) && (sstr) && SvGMAGICAL((SV *)(sstr))) ? ( \ SvGMAGICAL_off((SV *)(sstr)), \ sv_setsv((dstr), (sstr)), \ SvGMAGICAL_on((SV *)(sstr)), \ 1 \ ) : ( \ sv_setsv((dstr), (sstr)), \ 1 \ ), \ SvTEMP_on((SV *)(sstr)), \ 1 \ ) : ( \ (!((flags) & SV_GMAGIC) && (sstr) && SvGMAGICAL((SV *)(sstr))) ? ( \ SvGMAGICAL_off((SV *)(sstr)), \ sv_setsv((dstr), (sstr)), \ SvGMAGICAL_on((SV *)(sstr)), \ 1 \ ) : ( \ sv_setsv((dstr), (sstr)), \ 1 \ ) \ ) \ ) #endif #endif #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) #ifndef newSVsv_flags # define newSVsv_flags(sv, flags) ({ SV *_sv = newSV(0); sv_setsv_flags(_sv, (sv), (flags)); _sv; }) #endif #else #ifndef newSVsv_flags # define newSVsv_flags(sv, flags) ((PL_Sv = newSV(0)), sv_setsv_flags(PL_Sv, (sv), (flags)), PL_Sv) #endif #endif #ifndef newSVsv_nomg # define newSVsv_nomg(sv) newSVsv_flags((sv), SV_NOSTEAL) #endif #if (PERL_BCDVERSION >= 0x5017005) #ifndef sv_mortalcopy_flags # define sv_mortalcopy_flags(sv, flags) Perl_sv_mortalcopy_flags(aTHX_ (sv), (flags)) #endif #else #ifndef sv_mortalcopy_flags # define sv_mortalcopy_flags(sv, flags) sv_2mortal(newSVsv_flags((sv), (flags))) #endif #endif #ifndef SvMAGIC_set # define SvMAGIC_set(sv, val) \ STMT_START { assert(SvTYPE(sv) >= SVt_PVMG); \ (((XPVMG*) SvANY(sv))->xmg_magic = (val)); } STMT_END #endif #if (PERL_BCDVERSION < 0x5009003) #ifndef SvPVX_const # define SvPVX_const(sv) ((const char*) (0 + SvPVX(sv))) #endif #ifndef SvPVX_mutable # define SvPVX_mutable(sv) (0 + SvPVX(sv)) #endif #ifndef SvRV_set # define SvRV_set(sv, val) \ STMT_START { assert(SvTYPE(sv) >= SVt_RV); \ (((XRV*) SvANY(sv))->xrv_rv = (val)); } STMT_END #endif #else #ifndef SvPVX_const # define SvPVX_const(sv) ((const char*)((sv)->sv_u.svu_pv)) #endif #ifndef SvPVX_mutable # define SvPVX_mutable(sv) ((sv)->sv_u.svu_pv) #endif #ifndef SvRV_set # define SvRV_set(sv, val) \ STMT_START { assert(SvTYPE(sv) >= SVt_RV); \ ((sv)->sv_u.svu_rv = (val)); } STMT_END #endif #endif #ifndef SvSTASH_set # define SvSTASH_set(sv, val) \ STMT_START { assert(SvTYPE(sv) >= SVt_PVMG); \ (((XPVMG*) SvANY(sv))->xmg_stash = (val)); } STMT_END #endif #if (PERL_BCDVERSION < 0x5004000) #ifndef SvUV_set # define SvUV_set(sv, val) \ STMT_START { assert(SvTYPE(sv) == SVt_IV || SvTYPE(sv) >= SVt_PVIV); \ (((XPVIV*) SvANY(sv))->xiv_iv = (IV) (val)); } STMT_END #endif #else #ifndef SvUV_set # define SvUV_set(sv, val) \ STMT_START { assert(SvTYPE(sv) == SVt_IV || SvTYPE(sv) >= SVt_PVIV); \ (((XPVUV*) SvANY(sv))->xuv_uv = (val)); } STMT_END #endif #endif /* Hint: newSVpvn_share * The SVs created by this function only mimic the behaviour of * shared PVs without really being shared. Only use if you know * what you're doing. */ #ifndef newSVpvn_share #if defined(NEED_newSVpvn_share) static SV * DPPP_(my_newSVpvn_share)(pTHX_ const char * s, I32 len, U32 hash); static #else extern SV * DPPP_(my_newSVpvn_share)(pTHX_ const char * s, I32 len, U32 hash); #endif #if defined(NEED_newSVpvn_share) || defined(NEED_newSVpvn_share_GLOBAL) #ifdef newSVpvn_share # undef newSVpvn_share #endif #define newSVpvn_share(a,b,c) DPPP_(my_newSVpvn_share)(aTHX_ a,b,c) #define Perl_newSVpvn_share DPPP_(my_newSVpvn_share) SV * DPPP_(my_newSVpvn_share)(pTHX_ const char *s, I32 len, U32 hash) { SV *sv; if (len < 0) len = -len; if (!hash) PERL_HASH(hash, (char*) s, len); sv = newSVpvn((char *) s, len); sv_upgrade(sv, SVt_PVIV); SvIVX(sv) = hash; SvREADONLY_on(sv); SvPOK_on(sv); return sv; } #endif #endif #ifndef SvSHARED_HASH # define SvSHARED_HASH(sv) (0 + SvUVX(sv)) #endif #ifndef HvNAME_get # define HvNAME_get(hv) HvNAME(hv) #endif #ifndef HvNAMELEN_get # define HvNAMELEN_get(hv) (HvNAME_get(hv) ? (I32)strlen(HvNAME_get(hv)) : 0) #endif #if (PERL_BCDVERSION >= 0x5009002) && (PERL_BCDVERSION <= 0x5009003) /* 5.9.2 and 5.9.3 ignore the length param */ #undef gv_fetchpvn_flags #endif #ifndef GV_NOADD_MASK # define GV_NOADD_MASK 0xE0 #endif #ifndef gv_fetchpvn_flags # define gv_fetchpvn_flags(name, len, flags, sv_type) gv_fetchpv(SvPVX(sv_2mortal(newSVpvn((name), (len)))), ((flags) & GV_NOADD_MASK) ? FALSE : TRUE, (I32)(sv_type)) #endif #ifndef GvSVn # define GvSVn(gv) GvSV(gv) #endif #ifndef isGV_with_GP # define isGV_with_GP(gv) isGV(gv) #endif #ifndef gv_fetchsv # define gv_fetchsv(name, flags, svt) gv_fetchpv(SvPV_nolen_const(name), flags, svt) #endif #ifndef get_cvn_flags # define get_cvn_flags(name, namelen, flags) get_cv(name, flags) #endif #ifndef gv_init_pvn # define gv_init_pvn(gv, stash, ptr, len, flags) gv_init(gv, stash, ptr, len, flags & GV_ADDMULTI ? TRUE : FALSE) #endif /* concatenating with "" ensures that only literal strings are accepted as argument * note that STR_WITH_LEN() can't be used as argument to macros or functions that * under some configurations might be macros */ #ifndef STR_WITH_LEN # define STR_WITH_LEN(s) (s ""), (sizeof(s)-1) #endif #ifndef newSVpvs # define newSVpvs(str) newSVpvn(str "", sizeof(str) - 1) #endif #ifndef newSVpvs_flags # define newSVpvs_flags(str, flags) newSVpvn_flags(str "", sizeof(str) - 1, flags) #endif #ifndef newSVpvs_share # define newSVpvs_share(str) newSVpvn_share(str "", sizeof(str) - 1, 0) #endif #ifndef sv_catpvs # define sv_catpvs(sv, str) sv_catpvn(sv, str "", sizeof(str) - 1) #endif #ifndef sv_setpvs # define sv_setpvs(sv, str) sv_setpvn(sv, str "", sizeof(str) - 1) #endif #ifndef hv_fetchs # define hv_fetchs(hv, key, lval) hv_fetch(hv, key "", sizeof(key) - 1, lval) #endif #ifndef hv_stores # define hv_stores(hv, key, val) hv_store(hv, key "", sizeof(key) - 1, val, 0) #endif #ifndef gv_fetchpvs # define gv_fetchpvs(name, flags, svt) gv_fetchpvn_flags(name "", sizeof(name) - 1, flags, svt) #endif #ifndef gv_stashpvs # define gv_stashpvs(name, flags) gv_stashpvn(name "", sizeof(name) - 1, flags) #endif #ifndef get_cvs # define get_cvs(name, flags) get_cvn_flags(name "", sizeof(name)-1, flags) #endif #ifndef SvGETMAGIC # define SvGETMAGIC(x) STMT_START { if (SvGMAGICAL(x)) mg_get(x); } STMT_END #endif /* That's the best we can do... */ #ifndef sv_catpvn_nomg # define sv_catpvn_nomg sv_catpvn #endif #ifndef sv_catsv_nomg # define sv_catsv_nomg sv_catsv #endif #ifndef sv_setsv_nomg # define sv_setsv_nomg sv_setsv #endif #ifndef sv_pvn_nomg # define sv_pvn_nomg sv_pvn #endif #ifdef SVf_IVisUV #if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) #ifndef SvIV_nomg # define SvIV_nomg(sv) (!SvGMAGICAL((sv)) ? SvIV((sv)) : ({ SV *_sviv = sv_mortalcopy_flags((sv), SV_NOSTEAL); IV _iv = SvIV(_sviv); SvFLAGS((sv)) = (SvFLAGS((sv)) & ~SVf_IVisUV) | (SvFLAGS(_sviv) & SVf_IVisUV); _iv; })) #endif #ifndef SvUV_nomg # define SvUV_nomg(sv) (!SvGMAGICAL((sv)) ? SvUV((sv)) : ({ SV *_svuv = sv_mortalcopy_flags((sv), SV_NOSTEAL); UV _uv = SvUV(_svuv); SvFLAGS((sv)) = (SvFLAGS((sv)) & ~SVf_IVisUV) | (SvFLAGS(_svuv) & SVf_IVisUV); _uv; })) #endif #else #ifndef SvIV_nomg # define SvIV_nomg(sv) (!SvGMAGICAL((sv)) ? SvIV((sv)) : ((PL_Sv = sv_mortalcopy_flags((sv), SV_NOSTEAL)), sv_upgrade(PL_Sv, SVt_PVIV), (SvIVX(PL_Sv) = SvIV(PL_Sv)), (SvFLAGS((sv)) = (SvFLAGS((sv)) & ~SVf_IVisUV) | (SvFLAGS(PL_Sv) & SVf_IVisUV)), SvIVX(PL_Sv))) #endif #ifndef SvUV_nomg # define SvUV_nomg(sv) (!SvGMAGICAL((sv)) ? SvIV((sv)) : ((PL_Sv = sv_mortalcopy_flags((sv), SV_NOSTEAL)), sv_upgrade(PL_Sv, SVt_PVIV), (SvUVX(PL_Sv) = SvUV(PL_Sv)), (SvFLAGS((sv)) = (SvFLAGS((sv)) & ~SVf_IVisUV) | (SvFLAGS(PL_Sv) & SVf_IVisUV)), SvUVX(PL_Sv))) #endif #endif #else #ifndef SvIV_nomg # define SvIV_nomg(sv) (!SvGMAGICAL((sv)) ? SvIV((sv)) : SvIVx(sv_mortalcopy_flags((sv), SV_NOSTEAL))) #endif #ifndef SvUV_nomg # define SvUV_nomg(sv) (!SvGMAGICAL((sv)) ? SvUV((sv)) : SvUVx(sv_mortalcopy_flags((sv), SV_NOSTEAL))) #endif #endif #ifndef SvNV_nomg # define SvNV_nomg(sv) (!SvGMAGICAL((sv)) ? SvNV((sv)) : SvNVx(sv_mortalcopy_flags((sv), SV_NOSTEAL))) #endif #ifndef SvTRUE_nomg # define SvTRUE_nomg(sv) (!SvGMAGICAL((sv)) ? SvTRUE((sv)) : SvTRUEx(sv_mortalcopy_flags((sv), SV_NOSTEAL))) #endif #ifndef sv_catpv_mg # define sv_catpv_mg(sv, ptr) \ STMT_START { \ SV *TeMpSv = sv; \ sv_catpv(TeMpSv,ptr); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef sv_catpvn_mg # define sv_catpvn_mg(sv, ptr, len) \ STMT_START { \ SV *TeMpSv = sv; \ sv_catpvn(TeMpSv,ptr,len); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef sv_catsv_mg # define sv_catsv_mg(dsv, ssv) \ STMT_START { \ SV *TeMpSv = dsv; \ sv_catsv(TeMpSv,ssv); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef sv_setiv_mg # define sv_setiv_mg(sv, i) \ STMT_START { \ SV *TeMpSv = sv; \ sv_setiv(TeMpSv,i); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef sv_setnv_mg # define sv_setnv_mg(sv, num) \ STMT_START { \ SV *TeMpSv = sv; \ sv_setnv(TeMpSv,num); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef sv_setpv_mg # define sv_setpv_mg(sv, ptr) \ STMT_START { \ SV *TeMpSv = sv; \ sv_setpv(TeMpSv,ptr); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef sv_setpvn_mg # define sv_setpvn_mg(sv, ptr, len) \ STMT_START { \ SV *TeMpSv = sv; \ sv_setpvn(TeMpSv,ptr,len); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef sv_setsv_mg # define sv_setsv_mg(dsv, ssv) \ STMT_START { \ SV *TeMpSv = dsv; \ sv_setsv(TeMpSv,ssv); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef sv_setuv_mg # define sv_setuv_mg(sv, i) \ STMT_START { \ SV *TeMpSv = sv; \ sv_setuv(TeMpSv,i); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef sv_usepvn_mg # define sv_usepvn_mg(sv, ptr, len) \ STMT_START { \ SV *TeMpSv = sv; \ sv_usepvn(TeMpSv,ptr,len); \ SvSETMAGIC(TeMpSv); \ } STMT_END #endif #ifndef SvVSTRING_mg # define SvVSTRING_mg(sv) (SvMAGICAL(sv) ? mg_find(sv, PERL_MAGIC_vstring) : NULL) #endif /* Hint: sv_magic_portable * This is a compatibility function that is only available with * Devel::PPPort. It is NOT in the perl core. * Its purpose is to mimic the 5.8.0 behaviour of sv_magic() when * it is being passed a name pointer with namlen == 0. In that * case, perl 5.8.0 and later store the pointer, not a copy of it. * The compatibility can be provided back to perl 5.004. With * earlier versions, the code will not compile. */ #if (PERL_BCDVERSION < 0x5004000) /* code that uses sv_magic_portable will not compile */ #elif (PERL_BCDVERSION < 0x5008000) # define sv_magic_portable(sv, obj, how, name, namlen) \ STMT_START { \ SV *SvMp_sv = (sv); \ char *SvMp_name = (char *) (name); \ I32 SvMp_namlen = (namlen); \ if (SvMp_name && SvMp_namlen == 0) \ { \ MAGIC *mg; \ sv_magic(SvMp_sv, obj, how, 0, 0); \ mg = SvMAGIC(SvMp_sv); \ mg->mg_len = -42; /* XXX: this is the tricky part */ \ mg->mg_ptr = SvMp_name; \ } \ else \ { \ sv_magic(SvMp_sv, obj, how, SvMp_name, SvMp_namlen); \ } \ } STMT_END #else # define sv_magic_portable(a, b, c, d, e) sv_magic(a, b, c, d, e) #endif #if !defined(mg_findext) #if defined(NEED_mg_findext) static MAGIC * DPPP_(my_mg_findext)(const SV * sv, int type, const MGVTBL * vtbl); static #else extern MAGIC * DPPP_(my_mg_findext)(const SV * sv, int type, const MGVTBL * vtbl); #endif #if defined(NEED_mg_findext) || defined(NEED_mg_findext_GLOBAL) #define mg_findext DPPP_(my_mg_findext) #define Perl_mg_findext DPPP_(my_mg_findext) MAGIC * DPPP_(my_mg_findext)(const SV * sv, int type, const MGVTBL *vtbl) { if (sv) { MAGIC *mg; #ifdef AvPAD_NAMELIST assert(!(SvTYPE(sv) == SVt_PVAV && AvPAD_NAMELIST(sv))); #endif for (mg = SvMAGIC (sv); mg; mg = mg->mg_moremagic) { if (mg->mg_type == type && mg->mg_virtual == vtbl) return mg; } } return NULL; } #endif #endif #if !defined(sv_unmagicext) #if defined(NEED_sv_unmagicext) static int DPPP_(my_sv_unmagicext)(pTHX_ SV * const sv, const int type, MGVTBL * vtbl); static #else extern int DPPP_(my_sv_unmagicext)(pTHX_ SV * const sv, const int type, MGVTBL * vtbl); #endif #if defined(NEED_sv_unmagicext) || defined(NEED_sv_unmagicext_GLOBAL) #ifdef sv_unmagicext # undef sv_unmagicext #endif #define sv_unmagicext(a,b,c) DPPP_(my_sv_unmagicext)(aTHX_ a,b,c) #define Perl_sv_unmagicext DPPP_(my_sv_unmagicext) int DPPP_(my_sv_unmagicext)(pTHX_ SV *const sv, const int type, MGVTBL *vtbl) { MAGIC* mg; MAGIC** mgp; if (SvTYPE(sv) < SVt_PVMG || !SvMAGIC(sv)) return 0; mgp = &(SvMAGIC(sv)); for (mg = *mgp; mg; mg = *mgp) { const MGVTBL* const virt = mg->mg_virtual; if (mg->mg_type == type && virt == vtbl) { *mgp = mg->mg_moremagic; if (virt && virt->svt_free) virt->svt_free(aTHX_ sv, mg); if (mg->mg_ptr && mg->mg_type != PERL_MAGIC_regex_global) { if (mg->mg_len > 0) Safefree(mg->mg_ptr); else if (mg->mg_len == HEf_SVKEY) /* Questionable on older perls... */ SvREFCNT_dec(MUTABLE_SV(mg->mg_ptr)); else if (mg->mg_type == PERL_MAGIC_utf8) Safefree(mg->mg_ptr); } if (mg->mg_flags & MGf_REFCOUNTED) SvREFCNT_dec(mg->mg_obj); Safefree(mg); } else mgp = &mg->mg_moremagic; } if (SvMAGIC(sv)) { if (SvMAGICAL(sv)) /* if we're under save_magic, wait for restore_magic; */ mg_magical(sv); /* else fix the flags now */ } else { SvMAGICAL_off(sv); SvFLAGS(sv) |= (SvFLAGS(sv) & (SVp_IOK|SVp_NOK|SVp_POK)) >> PRIVSHIFT; } return 0; } #endif #endif #ifdef USE_ITHREADS #ifndef CopFILE # define CopFILE(c) ((c)->cop_file) #endif #ifndef CopFILEGV # define CopFILEGV(c) (CopFILE(c) ? gv_fetchfile(CopFILE(c)) : Nullgv) #endif #ifndef CopFILE_set # define CopFILE_set(c,pv) ((c)->cop_file = savepv(pv)) #endif #ifndef CopFILESV # define CopFILESV(c) (CopFILE(c) ? GvSV(gv_fetchfile(CopFILE(c))) : Nullsv) #endif #ifndef CopFILEAV # define CopFILEAV(c) (CopFILE(c) ? GvAV(gv_fetchfile(CopFILE(c))) : Nullav) #endif #ifndef CopSTASHPV # define CopSTASHPV(c) ((c)->cop_stashpv) #endif #ifndef CopSTASHPV_set # define CopSTASHPV_set(c,pv) ((c)->cop_stashpv = ((pv) ? savepv(pv) : Nullch)) #endif #ifndef CopSTASH # define CopSTASH(c) (CopSTASHPV(c) ? gv_stashpv(CopSTASHPV(c),GV_ADD) : Nullhv) #endif #ifndef CopSTASH_set # define CopSTASH_set(c,hv) CopSTASHPV_set(c, (hv) ? HvNAME(hv) : Nullch) #endif #ifndef CopSTASH_eq # define CopSTASH_eq(c,hv) ((hv) && (CopSTASHPV(c) == HvNAME(hv) \ || (CopSTASHPV(c) && HvNAME(hv) \ && strEQ(CopSTASHPV(c), HvNAME(hv))))) #endif #else #ifndef CopFILEGV # define CopFILEGV(c) ((c)->cop_filegv) #endif #ifndef CopFILEGV_set # define CopFILEGV_set(c,gv) ((c)->cop_filegv = (GV*)SvREFCNT_inc(gv)) #endif #ifndef CopFILE_set # define CopFILE_set(c,pv) CopFILEGV_set((c), gv_fetchfile(pv)) #endif #ifndef CopFILESV # define CopFILESV(c) (CopFILEGV(c) ? GvSV(CopFILEGV(c)) : Nullsv) #endif #ifndef CopFILEAV # define CopFILEAV(c) (CopFILEGV(c) ? GvAV(CopFILEGV(c)) : Nullav) #endif #ifndef CopFILE # define CopFILE(c) (CopFILESV(c) ? SvPVX(CopFILESV(c)) : Nullch) #endif #ifndef CopSTASH # define CopSTASH(c) ((c)->cop_stash) #endif #ifndef CopSTASH_set # define CopSTASH_set(c,hv) ((c)->cop_stash = (hv)) #endif #ifndef CopSTASHPV # define CopSTASHPV(c) (CopSTASH(c) ? HvNAME(CopSTASH(c)) : Nullch) #endif #ifndef CopSTASHPV_set # define CopSTASHPV_set(c,pv) CopSTASH_set((c), gv_stashpv(pv,GV_ADD)) #endif #ifndef CopSTASH_eq # define CopSTASH_eq(c,hv) (CopSTASH(c) == (hv)) #endif #endif /* USE_ITHREADS */ #if (PERL_BCDVERSION >= 0x5006000) #ifndef caller_cx # if defined(NEED_caller_cx) || defined(NEED_caller_cx_GLOBAL) static I32 DPPP_dopoptosub_at(const PERL_CONTEXT *cxstk, I32 startingblock) { I32 i; for (i = startingblock; i >= 0; i--) { register const PERL_CONTEXT * const cx = &cxstk[i]; switch (CxTYPE(cx)) { default: continue; case CXt_EVAL: case CXt_SUB: case CXt_FORMAT: return i; } } return i; } # endif # if defined(NEED_caller_cx) static const PERL_CONTEXT * DPPP_(my_caller_cx)(pTHX_ I32 level, const PERL_CONTEXT * * dbcxp); static #else extern const PERL_CONTEXT * DPPP_(my_caller_cx)(pTHX_ I32 level, const PERL_CONTEXT * * dbcxp); #endif #if defined(NEED_caller_cx) || defined(NEED_caller_cx_GLOBAL) #ifdef caller_cx # undef caller_cx #endif #define caller_cx(a,b) DPPP_(my_caller_cx)(aTHX_ a,b) #define Perl_caller_cx DPPP_(my_caller_cx) const PERL_CONTEXT * DPPP_(my_caller_cx)(pTHX_ I32 level, const PERL_CONTEXT **dbcxp) { register I32 cxix = DPPP_dopoptosub_at(cxstack, cxstack_ix); register const PERL_CONTEXT *cx; register const PERL_CONTEXT *ccstack = cxstack; const PERL_SI *top_si = PL_curstackinfo; for (;;) { /* we may be in a higher stacklevel, so dig down deeper */ while (cxix < 0 && top_si->si_type != PERLSI_MAIN) { top_si = top_si->si_prev; ccstack = top_si->si_cxstack; cxix = DPPP_dopoptosub_at(ccstack, top_si->si_cxix); } if (cxix < 0) return NULL; /* caller() should not report the automatic calls to &DB::sub */ if (PL_DBsub && GvCV(PL_DBsub) && cxix >= 0 && ccstack[cxix].blk_sub.cv == GvCV(PL_DBsub)) level++; if (!level--) break; cxix = DPPP_dopoptosub_at(ccstack, cxix - 1); } cx = &ccstack[cxix]; if (dbcxp) *dbcxp = cx; if (CxTYPE(cx) == CXt_SUB || CxTYPE(cx) == CXt_FORMAT) { const I32 dbcxix = DPPP_dopoptosub_at(ccstack, cxix - 1); /* We expect that ccstack[dbcxix] is CXt_SUB, anyway, the field below is defined for any cx. */ /* caller() should not report the automatic calls to &DB::sub */ if (PL_DBsub && GvCV(PL_DBsub) && dbcxix >= 0 && ccstack[dbcxix].blk_sub.cv == GvCV(PL_DBsub)) cx = &ccstack[dbcxix]; } return cx; } # endif #endif /* caller_cx */ #endif /* 5.6.0 */ #ifndef IN_PERL_COMPILETIME # define IN_PERL_COMPILETIME (PL_curcop == &PL_compiling) #endif #ifndef IN_LOCALE_RUNTIME # define IN_LOCALE_RUNTIME (PL_curcop->op_private & HINT_LOCALE) #endif #ifndef IN_LOCALE_COMPILETIME # define IN_LOCALE_COMPILETIME (PL_hints & HINT_LOCALE) #endif #ifndef IN_LOCALE # define IN_LOCALE (IN_PERL_COMPILETIME ? IN_LOCALE_COMPILETIME : IN_LOCALE_RUNTIME) #endif #ifndef IS_NUMBER_IN_UV # define IS_NUMBER_IN_UV 0x01 #endif #ifndef IS_NUMBER_GREATER_THAN_UV_MAX # define IS_NUMBER_GREATER_THAN_UV_MAX 0x02 #endif #ifndef IS_NUMBER_NOT_INT # define IS_NUMBER_NOT_INT 0x04 #endif #ifndef IS_NUMBER_NEG # define IS_NUMBER_NEG 0x08 #endif #ifndef IS_NUMBER_INFINITY # define IS_NUMBER_INFINITY 0x10 #endif #ifndef IS_NUMBER_NAN # define IS_NUMBER_NAN 0x20 #endif #ifndef GROK_NUMERIC_RADIX # define GROK_NUMERIC_RADIX(sp, send) grok_numeric_radix(sp, send) #endif #ifndef PERL_SCAN_GREATER_THAN_UV_MAX # define PERL_SCAN_GREATER_THAN_UV_MAX 0x02 #endif #ifndef PERL_SCAN_SILENT_ILLDIGIT # define PERL_SCAN_SILENT_ILLDIGIT 0x04 #endif #ifndef PERL_SCAN_ALLOW_UNDERSCORES # define PERL_SCAN_ALLOW_UNDERSCORES 0x01 #endif #ifndef PERL_SCAN_DISALLOW_PREFIX # define PERL_SCAN_DISALLOW_PREFIX 0x02 #endif #ifndef grok_numeric_radix #if defined(NEED_grok_numeric_radix) static bool DPPP_(my_grok_numeric_radix)(pTHX_ const char * * sp, const char * send); static #else extern bool DPPP_(my_grok_numeric_radix)(pTHX_ const char * * sp, const char * send); #endif #if defined(NEED_grok_numeric_radix) || defined(NEED_grok_numeric_radix_GLOBAL) #ifdef grok_numeric_radix # undef grok_numeric_radix #endif #define grok_numeric_radix(a,b) DPPP_(my_grok_numeric_radix)(aTHX_ a,b) #define Perl_grok_numeric_radix DPPP_(my_grok_numeric_radix) bool DPPP_(my_grok_numeric_radix)(pTHX_ const char **sp, const char *send) { #ifdef USE_LOCALE_NUMERIC #ifdef PL_numeric_radix_sv if (PL_numeric_radix_sv && IN_LOCALE) { STRLEN len; char* radix = SvPV(PL_numeric_radix_sv, len); if (*sp + len <= send && memEQ(*sp, radix, len)) { *sp += len; return TRUE; } } #else /* older perls don't have PL_numeric_radix_sv so the radix * must manually be requested from locale.h */ #include dTHR; /* needed for older threaded perls */ struct lconv *lc = localeconv(); char *radix = lc->decimal_point; if (radix && IN_LOCALE) { STRLEN len = strlen(radix); if (*sp + len <= send && memEQ(*sp, radix, len)) { *sp += len; return TRUE; } } #endif #endif /* USE_LOCALE_NUMERIC */ /* always try "." if numeric radix didn't match because * we may have data from different locales mixed */ if (*sp < send && **sp == '.') { ++*sp; return TRUE; } return FALSE; } #endif #endif #ifndef grok_number #if defined(NEED_grok_number) static int DPPP_(my_grok_number)(pTHX_ const char * pv, STRLEN len, UV * valuep); static #else extern int DPPP_(my_grok_number)(pTHX_ const char * pv, STRLEN len, UV * valuep); #endif #if defined(NEED_grok_number) || defined(NEED_grok_number_GLOBAL) #ifdef grok_number # undef grok_number #endif #define grok_number(a,b,c) DPPP_(my_grok_number)(aTHX_ a,b,c) #define Perl_grok_number DPPP_(my_grok_number) int DPPP_(my_grok_number)(pTHX_ const char *pv, STRLEN len, UV *valuep) { const char *s = pv; const char *send = pv + len; const UV max_div_10 = UV_MAX / 10; const char max_mod_10 = UV_MAX % 10; int numtype = 0; int sawinf = 0; int sawnan = 0; while (s < send && isSPACE(*s)) s++; if (s == send) { return 0; } else if (*s == '-') { s++; numtype = IS_NUMBER_NEG; } else if (*s == '+') s++; if (s == send) return 0; /* next must be digit or the radix separator or beginning of infinity */ if (isDIGIT(*s)) { /* UVs are at least 32 bits, so the first 9 decimal digits cannot overflow. */ UV value = *s - '0'; /* This construction seems to be more optimiser friendly. (without it gcc does the isDIGIT test and the *s - '0' separately) With it gcc on arm is managing 6 instructions (6 cycles) per digit. In theory the optimiser could deduce how far to unroll the loop before checking for overflow. */ if (++s < send) { int digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { digit = *s - '0'; if (digit >= 0 && digit <= 9) { value = value * 10 + digit; if (++s < send) { /* Now got 9 digits, so need to check each time for overflow. */ digit = *s - '0'; while (digit >= 0 && digit <= 9 && (value < max_div_10 || (value == max_div_10 && digit <= max_mod_10))) { value = value * 10 + digit; if (++s < send) digit = *s - '0'; else break; } if (digit >= 0 && digit <= 9 && (s < send)) { /* value overflowed. skip the remaining digits, don't worry about setting *valuep. */ do { s++; } while (s < send && isDIGIT(*s)); numtype |= IS_NUMBER_GREATER_THAN_UV_MAX; goto skip_value; } } } } } } } } } } } } } } } } } } numtype |= IS_NUMBER_IN_UV; if (valuep) *valuep = value; skip_value: if (GROK_NUMERIC_RADIX(&s, send)) { numtype |= IS_NUMBER_NOT_INT; while (s < send && isDIGIT(*s)) /* optional digits after the radix */ s++; } } else if (GROK_NUMERIC_RADIX(&s, send)) { numtype |= IS_NUMBER_NOT_INT | IS_NUMBER_IN_UV; /* valuep assigned below */ /* no digits before the radix means we need digits after it */ if (s < send && isDIGIT(*s)) { do { s++; } while (s < send && isDIGIT(*s)); if (valuep) { /* integer approximation is valid - it's 0. */ *valuep = 0; } } else return 0; } else if (*s == 'I' || *s == 'i') { s++; if (s == send || (*s != 'N' && *s != 'n')) return 0; s++; if (s == send || (*s != 'F' && *s != 'f')) return 0; s++; if (s < send && (*s == 'I' || *s == 'i')) { s++; if (s == send || (*s != 'N' && *s != 'n')) return 0; s++; if (s == send || (*s != 'I' && *s != 'i')) return 0; s++; if (s == send || (*s != 'T' && *s != 't')) return 0; s++; if (s == send || (*s != 'Y' && *s != 'y')) return 0; s++; } sawinf = 1; } else if (*s == 'N' || *s == 'n') { /* XXX TODO: There are signaling NaNs and quiet NaNs. */ s++; if (s == send || (*s != 'A' && *s != 'a')) return 0; s++; if (s == send || (*s != 'N' && *s != 'n')) return 0; s++; sawnan = 1; } else return 0; if (sawinf) { numtype &= IS_NUMBER_NEG; /* Keep track of sign */ numtype |= IS_NUMBER_INFINITY | IS_NUMBER_NOT_INT; } else if (sawnan) { numtype &= IS_NUMBER_NEG; /* Keep track of sign */ numtype |= IS_NUMBER_NAN | IS_NUMBER_NOT_INT; } else if (s < send) { /* we can have an optional exponent part */ if (*s == 'e' || *s == 'E') { /* The only flag we keep is sign. Blow away any "it's UV" */ numtype &= IS_NUMBER_NEG; numtype |= IS_NUMBER_NOT_INT; s++; if (s < send && (*s == '-' || *s == '+')) s++; if (s < send && isDIGIT(*s)) { do { s++; } while (s < send && isDIGIT(*s)); } else return 0; } } while (s < send && isSPACE(*s)) s++; if (s >= send) return numtype; if (len == 10 && memEQ(pv, "0 but true", 10)) { if (valuep) *valuep = 0; return IS_NUMBER_IN_UV; } return 0; } #endif #endif /* * The grok_* routines have been modified to use warn() instead of * Perl_warner(). Also, 'hexdigit' was the former name of PL_hexdigit, * which is why the stack variable has been renamed to 'xdigit'. */ #ifndef grok_bin #if defined(NEED_grok_bin) static UV DPPP_(my_grok_bin)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result); static #else extern UV DPPP_(my_grok_bin)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result); #endif #if defined(NEED_grok_bin) || defined(NEED_grok_bin_GLOBAL) #ifdef grok_bin # undef grok_bin #endif #define grok_bin(a,b,c,d) DPPP_(my_grok_bin)(aTHX_ a,b,c,d) #define Perl_grok_bin DPPP_(my_grok_bin) UV DPPP_(my_grok_bin)(pTHX_ const char *start, STRLEN *len_p, I32 *flags, NV *result) { const char *s = start; STRLEN len = *len_p; UV value = 0; NV value_nv = 0; const UV max_div_2 = UV_MAX / 2; bool allow_underscores = *flags & PERL_SCAN_ALLOW_UNDERSCORES; bool overflowed = FALSE; if (!(*flags & PERL_SCAN_DISALLOW_PREFIX)) { /* strip off leading b or 0b. for compatibility silently suffer "b" and "0b" as valid binary numbers. */ if (len >= 1) { if (s[0] == 'b') { s++; len--; } else if (len >= 2 && s[0] == '0' && s[1] == 'b') { s+=2; len-=2; } } } for (; len-- && *s; s++) { char bit = *s; if (bit == '0' || bit == '1') { /* Write it in this wonky order with a goto to attempt to get the compiler to make the common case integer-only loop pretty tight. With gcc seems to be much straighter code than old scan_bin. */ redo: if (!overflowed) { if (value <= max_div_2) { value = (value << 1) | (bit - '0'); continue; } /* Bah. We're just overflowed. */ warn("Integer overflow in binary number"); overflowed = TRUE; value_nv = (NV) value; } value_nv *= 2.0; /* If an NV has not enough bits in its mantissa to * represent a UV this summing of small low-order numbers * is a waste of time (because the NV cannot preserve * the low-order bits anyway): we could just remember when * did we overflow and in the end just multiply value_nv by the * right amount. */ value_nv += (NV)(bit - '0'); continue; } if (bit == '_' && len && allow_underscores && (bit = s[1]) && (bit == '0' || bit == '1')) { --len; ++s; goto redo; } if (!(*flags & PERL_SCAN_SILENT_ILLDIGIT)) warn("Illegal binary digit '%c' ignored", *s); break; } if ( ( overflowed && value_nv > 4294967295.0) #if UVSIZE > 4 || (!overflowed && value > 0xffffffff ) #endif ) { warn("Binary number > 0b11111111111111111111111111111111 non-portable"); } *len_p = s - start; if (!overflowed) { *flags = 0; return value; } *flags = PERL_SCAN_GREATER_THAN_UV_MAX; if (result) *result = value_nv; return UV_MAX; } #endif #endif #ifndef grok_hex #if defined(NEED_grok_hex) static UV DPPP_(my_grok_hex)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result); static #else extern UV DPPP_(my_grok_hex)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result); #endif #if defined(NEED_grok_hex) || defined(NEED_grok_hex_GLOBAL) #ifdef grok_hex # undef grok_hex #endif #define grok_hex(a,b,c,d) DPPP_(my_grok_hex)(aTHX_ a,b,c,d) #define Perl_grok_hex DPPP_(my_grok_hex) UV DPPP_(my_grok_hex)(pTHX_ const char *start, STRLEN *len_p, I32 *flags, NV *result) { const char *s = start; STRLEN len = *len_p; UV value = 0; NV value_nv = 0; const UV max_div_16 = UV_MAX / 16; bool allow_underscores = *flags & PERL_SCAN_ALLOW_UNDERSCORES; bool overflowed = FALSE; const char *xdigit; if (!(*flags & PERL_SCAN_DISALLOW_PREFIX)) { /* strip off leading x or 0x. for compatibility silently suffer "x" and "0x" as valid hex numbers. */ if (len >= 1) { if (s[0] == 'x') { s++; len--; } else if (len >= 2 && s[0] == '0' && s[1] == 'x') { s+=2; len-=2; } } } for (; len-- && *s; s++) { xdigit = strchr((char *) PL_hexdigit, *s); if (xdigit) { /* Write it in this wonky order with a goto to attempt to get the compiler to make the common case integer-only loop pretty tight. With gcc seems to be much straighter code than old scan_hex. */ redo: if (!overflowed) { if (value <= max_div_16) { value = (value << 4) | ((xdigit - PL_hexdigit) & 15); continue; } warn("Integer overflow in hexadecimal number"); overflowed = TRUE; value_nv = (NV) value; } value_nv *= 16.0; /* If an NV has not enough bits in its mantissa to * represent a UV this summing of small low-order numbers * is a waste of time (because the NV cannot preserve * the low-order bits anyway): we could just remember when * did we overflow and in the end just multiply value_nv by the * right amount of 16-tuples. */ value_nv += (NV)((xdigit - PL_hexdigit) & 15); continue; } if (*s == '_' && len && allow_underscores && s[1] && (xdigit = strchr((char *) PL_hexdigit, s[1]))) { --len; ++s; goto redo; } if (!(*flags & PERL_SCAN_SILENT_ILLDIGIT)) warn("Illegal hexadecimal digit '%c' ignored", *s); break; } if ( ( overflowed && value_nv > 4294967295.0) #if UVSIZE > 4 || (!overflowed && value > 0xffffffff ) #endif ) { warn("Hexadecimal number > 0xffffffff non-portable"); } *len_p = s - start; if (!overflowed) { *flags = 0; return value; } *flags = PERL_SCAN_GREATER_THAN_UV_MAX; if (result) *result = value_nv; return UV_MAX; } #endif #endif #ifndef grok_oct #if defined(NEED_grok_oct) static UV DPPP_(my_grok_oct)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result); static #else extern UV DPPP_(my_grok_oct)(pTHX_ const char * start, STRLEN * len_p, I32 * flags, NV * result); #endif #if defined(NEED_grok_oct) || defined(NEED_grok_oct_GLOBAL) #ifdef grok_oct # undef grok_oct #endif #define grok_oct(a,b,c,d) DPPP_(my_grok_oct)(aTHX_ a,b,c,d) #define Perl_grok_oct DPPP_(my_grok_oct) UV DPPP_(my_grok_oct)(pTHX_ const char *start, STRLEN *len_p, I32 *flags, NV *result) { const char *s = start; STRLEN len = *len_p; UV value = 0; NV value_nv = 0; const UV max_div_8 = UV_MAX / 8; bool allow_underscores = *flags & PERL_SCAN_ALLOW_UNDERSCORES; bool overflowed = FALSE; for (; len-- && *s; s++) { /* gcc 2.95 optimiser not smart enough to figure that this subtraction out front allows slicker code. */ int digit = *s - '0'; if (digit >= 0 && digit <= 7) { /* Write it in this wonky order with a goto to attempt to get the compiler to make the common case integer-only loop pretty tight. */ redo: if (!overflowed) { if (value <= max_div_8) { value = (value << 3) | digit; continue; } /* Bah. We're just overflowed. */ warn("Integer overflow in octal number"); overflowed = TRUE; value_nv = (NV) value; } value_nv *= 8.0; /* If an NV has not enough bits in its mantissa to * represent a UV this summing of small low-order numbers * is a waste of time (because the NV cannot preserve * the low-order bits anyway): we could just remember when * did we overflow and in the end just multiply value_nv by the * right amount of 8-tuples. */ value_nv += (NV)digit; continue; } if (digit == ('_' - '0') && len && allow_underscores && (digit = s[1] - '0') && (digit >= 0 && digit <= 7)) { --len; ++s; goto redo; } /* Allow \octal to work the DWIM way (that is, stop scanning * as soon as non-octal characters are seen, complain only iff * someone seems to want to use the digits eight and nine). */ if (digit == 8 || digit == 9) { if (!(*flags & PERL_SCAN_SILENT_ILLDIGIT)) warn("Illegal octal digit '%c' ignored", *s); } break; } if ( ( overflowed && value_nv > 4294967295.0) #if UVSIZE > 4 || (!overflowed && value > 0xffffffff ) #endif ) { warn("Octal number > 037777777777 non-portable"); } *len_p = s - start; if (!overflowed) { *flags = 0; return value; } *flags = PERL_SCAN_GREATER_THAN_UV_MAX; if (result) *result = value_nv; return UV_MAX; } #endif #endif #if !defined(my_snprintf) #if defined(NEED_my_snprintf) static int DPPP_(my_my_snprintf)(char * buffer, const Size_t len, const char * format, ...); static #else extern int DPPP_(my_my_snprintf)(char * buffer, const Size_t len, const char * format, ...); #endif #if defined(NEED_my_snprintf) || defined(NEED_my_snprintf_GLOBAL) #define my_snprintf DPPP_(my_my_snprintf) #define Perl_my_snprintf DPPP_(my_my_snprintf) int DPPP_(my_my_snprintf)(char *buffer, const Size_t len, const char *format, ...) { dTHX; int retval; va_list ap; va_start(ap, format); #ifdef HAS_VSNPRINTF retval = vsnprintf(buffer, len, format, ap); #else retval = vsprintf(buffer, format, ap); #endif va_end(ap); if (retval < 0 || (len > 0 && (Size_t)retval >= len)) Perl_croak(aTHX_ "panic: my_snprintf buffer overflow"); return retval; } #endif #endif #if !defined(my_sprintf) #if defined(NEED_my_sprintf) static int DPPP_(my_my_sprintf)(char * buffer, const char * pat, ...); static #else extern int DPPP_(my_my_sprintf)(char * buffer, const char * pat, ...); #endif #if defined(NEED_my_sprintf) || defined(NEED_my_sprintf_GLOBAL) #define my_sprintf DPPP_(my_my_sprintf) /* Warning: my_sprintf It's safer to use my_snprintf instead */ /* Replace my_sprintf with my_snprintf */ int DPPP_(my_my_sprintf)(char *buffer, const char* pat, ...) { va_list args; va_start(args, pat); vsprintf(buffer, pat, args); va_end(args); return strlen(buffer); } #endif #endif #ifdef NO_XSLOCKS # ifdef dJMPENV # define dXCPT dJMPENV; int rEtV = 0 # define XCPT_TRY_START JMPENV_PUSH(rEtV); if (rEtV == 0) # define XCPT_TRY_END JMPENV_POP; # define XCPT_CATCH if (rEtV != 0) # define XCPT_RETHROW JMPENV_JUMP(rEtV) # else # define dXCPT Sigjmp_buf oldTOP; int rEtV = 0 # define XCPT_TRY_START Copy(top_env, oldTOP, 1, Sigjmp_buf); rEtV = Sigsetjmp(top_env, 1); if (rEtV == 0) # define XCPT_TRY_END Copy(oldTOP, top_env, 1, Sigjmp_buf); # define XCPT_CATCH if (rEtV != 0) # define XCPT_RETHROW Siglongjmp(top_env, rEtV) # endif #endif #if !defined(my_strlcat) #if defined(NEED_my_strlcat) static Size_t DPPP_(my_my_strlcat)(char * dst, const char * src, Size_t size); static #else extern Size_t DPPP_(my_my_strlcat)(char * dst, const char * src, Size_t size); #endif #if defined(NEED_my_strlcat) || defined(NEED_my_strlcat_GLOBAL) #define my_strlcat DPPP_(my_my_strlcat) #define Perl_my_strlcat DPPP_(my_my_strlcat) Size_t DPPP_(my_my_strlcat)(char *dst, const char *src, Size_t size) { Size_t used, length, copy; used = strlen(dst); length = strlen(src); if (size > 0 && used < size - 1) { copy = (length >= size - used) ? size - used - 1 : length; memcpy(dst + used, src, copy); dst[used + copy] = '\0'; } return used + length; } #endif #endif #if !defined(my_strlcpy) #if defined(NEED_my_strlcpy) static Size_t DPPP_(my_my_strlcpy)(char * dst, const char * src, Size_t size); static #else extern Size_t DPPP_(my_my_strlcpy)(char * dst, const char * src, Size_t size); #endif #if defined(NEED_my_strlcpy) || defined(NEED_my_strlcpy_GLOBAL) #define my_strlcpy DPPP_(my_my_strlcpy) #define Perl_my_strlcpy DPPP_(my_my_strlcpy) Size_t DPPP_(my_my_strlcpy)(char *dst, const char *src, Size_t size) { Size_t length, copy; length = strlen(src); if (size > 0) { copy = (length >= size) ? size - 1 : length; memcpy(dst, src, copy); dst[copy] = '\0'; } return length; } #endif #endif #ifdef SVf_UTF8 #ifndef SvUTF8 # define SvUTF8(sv) (SvFLAGS(sv) & SVf_UTF8) #endif #endif #if (PERL_BCDVERSION == 0x5019001) /* 5.19.1 does not have UTF8fARG, only broken UTF8f */ #undef UTF8f #endif #ifdef SVf_UTF8 #ifndef UTF8f # define UTF8f SVf #endif #ifndef UTF8fARG # define UTF8fARG(u,l,p) newSVpvn_flags((p), (l), ((u) ? SVf_UTF8 : 0) | SVs_TEMP) #endif #endif #define D_PPP_MIN(a,b) (((a) <= (b)) ? (a) : (b)) #ifndef UNICODE_REPLACEMENT # define UNICODE_REPLACEMENT 0xFFFD #endif #ifdef UTF8_MAXLEN #ifndef UTF8_MAXBYTES # define UTF8_MAXBYTES UTF8_MAXLEN #endif #endif #ifndef UTF_START_MARK # define UTF_START_MARK(len) \ (((len) > 7) ? 0xFF : (0xFF & (0xFE << (7-(len))))) #endif #if (PERL_BCDVERSION < 0x5018000) /* On non-EBCDIC was valid before this, */ /* but easier to just do one check */ # undef UTF8_MAXBYTES_CASE #endif #if 'A' == 65 # define D_PPP_BYTE_INFO_BITS 6 /* 6 bits meaningful in continuation bytes */ #ifndef UTF8_MAXBYTES_CASE # define UTF8_MAXBYTES_CASE 13 #endif #else # define D_PPP_BYTE_INFO_BITS 5 /* 5 bits meaningful in continuation bytes */ #ifndef UTF8_MAXBYTES_CASE # define UTF8_MAXBYTES_CASE 15 #endif #endif #ifndef UTF_ACCUMULATION_SHIFT # define UTF_ACCUMULATION_SHIFT D_PPP_BYTE_INFO_BITS #endif #ifdef NATIVE_TO_UTF #ifndef NATIVE_UTF8_TO_I8 # define NATIVE_UTF8_TO_I8(c) NATIVE_TO_UTF(c) #endif #else /* System doesn't support EBCDIC */ #ifndef NATIVE_UTF8_TO_I8 # define NATIVE_UTF8_TO_I8(c) (c) #endif #endif #ifdef UTF_TO_NATIVE #ifndef I8_TO_NATIVE_UTF8 # define I8_TO_NATIVE_UTF8(c) UTF_TO_NATIVE(c) #endif #else /* System doesn't support EBCDIC */ #ifndef I8_TO_NATIVE_UTF8 # define I8_TO_NATIVE_UTF8(c) (c) #endif #endif #ifndef UTF_START_MASK # define UTF_START_MASK(len) \ (((len) >= 7) ? 0x00 : (0x1F >> ((len)-2))) #endif #ifndef UTF_IS_CONTINUATION_MASK # define UTF_IS_CONTINUATION_MASK \ ((U8) (0xFF << UTF_ACCUMULATION_SHIFT)) #endif #ifndef UTF_CONTINUATION_MARK # define UTF_CONTINUATION_MARK \ (UTF_IS_CONTINUATION_MASK & 0xB0) #endif #ifndef UTF_MIN_START_BYTE # define UTF_MIN_START_BYTE \ ((UTF_CONTINUATION_MARK >> UTF_ACCUMULATION_SHIFT) | UTF_START_MARK(2)) #endif #ifndef UTF_MIN_ABOVE_LATIN1_BYTE # define UTF_MIN_ABOVE_LATIN1_BYTE \ ((0x100 >> UTF_ACCUMULATION_SHIFT) | UTF_START_MARK(2)) #endif #if (PERL_BCDVERSION < 0x5007000) /* Was the complement of what should have been */ # undef UTF8_IS_DOWNGRADEABLE_START #endif #ifndef UTF8_IS_DOWNGRADEABLE_START # define UTF8_IS_DOWNGRADEABLE_START(c) \ inRANGE(NATIVE_UTF8_TO_I8(c), \ UTF_MIN_START_BYTE, UTF_MIN_ABOVE_LATIN1_BYTE - 1) #endif #ifndef UTF_CONTINUATION_MASK # define UTF_CONTINUATION_MASK \ ((U8) ((1U << UTF_ACCUMULATION_SHIFT) - 1)) #endif #ifndef UTF8_ACCUMULATE # define UTF8_ACCUMULATE(base, added) \ (((base) << UTF_ACCUMULATION_SHIFT) \ | ((NATIVE_UTF8_TO_I8(added)) \ & UTF_CONTINUATION_MASK)) #endif #ifndef UTF8_ALLOW_ANYUV # define UTF8_ALLOW_ANYUV 0 #endif #ifndef UTF8_ALLOW_EMPTY # define UTF8_ALLOW_EMPTY 0x0001 #endif #ifndef UTF8_ALLOW_CONTINUATION # define UTF8_ALLOW_CONTINUATION 0x0002 #endif #ifndef UTF8_ALLOW_NON_CONTINUATION # define UTF8_ALLOW_NON_CONTINUATION 0x0004 #endif #ifndef UTF8_ALLOW_SHORT # define UTF8_ALLOW_SHORT 0x0008 #endif #ifndef UTF8_ALLOW_LONG # define UTF8_ALLOW_LONG 0x0010 #endif #ifndef UTF8_ALLOW_OVERFLOW # define UTF8_ALLOW_OVERFLOW 0x0080 #endif #ifndef UTF8_ALLOW_ANY # define UTF8_ALLOW_ANY ( UTF8_ALLOW_CONTINUATION \ |UTF8_ALLOW_NON_CONTINUATION \ |UTF8_ALLOW_SHORT \ |UTF8_ALLOW_LONG \ |UTF8_ALLOW_OVERFLOW) #endif #if defined UTF8SKIP /* Don't use official versions because they use MIN, which may not be available */ #undef UTF8_SAFE_SKIP #undef UTF8_CHK_SKIP #ifndef UTF8_SAFE_SKIP # define UTF8_SAFE_SKIP(s, e) ( \ ((((e) - (s)) <= 0) \ ? 0 \ : D_PPP_MIN(((e) - (s)), UTF8SKIP(s)))) #endif #ifndef UTF8_CHK_SKIP # define UTF8_CHK_SKIP(s) \ (s[0] == '\0' ? 1 : ((U8) D_PPP_MIN(my_strnlen((char *) (s), UTF8SKIP(s)), \ UTF8SKIP(s)))) #endif /* UTF8_CHK_SKIP depends on my_strnlen */ #ifndef UTF8_SKIP # define UTF8_SKIP(s) UTF8SKIP(s) #endif #endif #if 'A' == 65 #ifndef UTF8_IS_INVARIANT # define UTF8_IS_INVARIANT(c) isASCII(c) #endif #else #ifndef UTF8_IS_INVARIANT # define UTF8_IS_INVARIANT(c) (isASCII(c) || isCNTRL_L1(c)) #endif #endif #ifndef UVCHR_IS_INVARIANT # define UVCHR_IS_INVARIANT(c) UTF8_IS_INVARIANT(c) #endif #ifdef UVCHR_IS_INVARIANT # if 'A' == 65 # ifdef QUADKIND # define D_PPP_UVCHR_SKIP_UPPER(c) \ (WIDEST_UTYPE) (c) < \ (((WIDEST_UTYPE) 1) << (6 * D_PPP_BYTE_INFO_BITS)) ? 7 : 13 # else # define D_PPP_UVCHR_SKIP_UPPER(c) 7 /* 32 bit platform */ # endif # else /* In the releases this is backported to, UTF-EBCDIC had a max of 2**31-1 */ # define D_PPP_UVCHR_SKIP_UPPER(c) 7 # endif #ifndef UVCHR_SKIP # define UVCHR_SKIP(c) \ UVCHR_IS_INVARIANT(c) ? 1 : \ (WIDEST_UTYPE) (c) < (32 * (1U << ( D_PPP_BYTE_INFO_BITS))) ? 2 : \ (WIDEST_UTYPE) (c) < (16 * (1U << (2 * D_PPP_BYTE_INFO_BITS))) ? 3 : \ (WIDEST_UTYPE) (c) < ( 8 * (1U << (3 * D_PPP_BYTE_INFO_BITS))) ? 4 : \ (WIDEST_UTYPE) (c) < ( 4 * (1U << (4 * D_PPP_BYTE_INFO_BITS))) ? 5 : \ (WIDEST_UTYPE) (c) < ( 2 * (1U << (5 * D_PPP_BYTE_INFO_BITS))) ? 6 : \ D_PPP_UVCHR_SKIP_UPPER(c) #endif #endif #ifdef is_ascii_string #ifndef is_invariant_string # define is_invariant_string(s,l) is_ascii_string(s,l) #endif #ifndef is_utf8_invariant_string # define is_utf8_invariant_string(s,l) is_ascii_string(s,l) #endif /* Hint: is_ascii_string, is_invariant_string is_utf8_invariant_string() does the same thing and is preferred because its name is more accurate as to what it does */ #endif #ifdef ibcmp_utf8 #ifndef foldEQ_utf8 # define foldEQ_utf8(s1,pe1,l1,u1,s2,pe2,l2,u2) \ cBOOL(! ibcmp_utf8(s1,pe1,l1,u1,s2,pe2,l2,u2)) #endif #endif #if defined(is_utf8_string) && defined(UTF8SKIP) #ifndef isUTF8_CHAR # define isUTF8_CHAR(s, e) ( \ (e) <= (s) || ! is_utf8_string(s, UTF8_SAFE_SKIP(s, e)) \ ? 0 \ : UTF8SKIP(s)) #endif #endif #if 'A' == 65 #ifndef BOM_UTF8 # define BOM_UTF8 "\xEF\xBB\xBF" #endif #ifndef REPLACEMENT_CHARACTER_UTF8 # define REPLACEMENT_CHARACTER_UTF8 "\xEF\xBF\xBD" #endif #elif '^' == 95 #ifndef BOM_UTF8 # define BOM_UTF8 "\xDD\x73\x66\x73" #endif #ifndef REPLACEMENT_CHARACTER_UTF8 # define REPLACEMENT_CHARACTER_UTF8 "\xDD\x73\x73\x71" #endif #elif '^' == 176 #ifndef BOM_UTF8 # define BOM_UTF8 "\xDD\x72\x65\x72" #endif #ifndef REPLACEMENT_CHARACTER_UTF8 # define REPLACEMENT_CHARACTER_UTF8 "\xDD\x72\x72\x70" #endif #else # error Unknown character set #endif #if (PERL_BCDVERSION < 0x5031004) /* Versions prior to this accepted things that are now considered * malformations, and didn't return -1 on error with warnings enabled * */ # undef utf8_to_uvchr_buf #endif /* This implementation brings modern, generally more restricted standards to * utf8_to_uvchr_buf. Some of these are security related, and clearly must * be done. But its arguable that the others need not, and hence should not. * The reason they're here is that a module that intends to play with the * latest perls should be able to work the same in all releases. An example is * that perl no longer accepts any UV for a code point, but limits them to * IV_MAX or below. This is for future internal use of the larger code points. * If it turns out that some of these changes are breaking code that isn't * intended to work with modern perls, the tighter restrictions could be * relaxed. khw thinks this is unlikely, but has been wrong in the past. */ /* 5.6.0 is the first release with UTF-8, and we don't implement this function * there due to its likely lack of still being in use, and the underlying * implementation is very different from later ones, without the later * safeguards, so would require extra work to deal with */ #if (PERL_BCDVERSION >= 0x5006001) && ! defined(utf8_to_uvchr_buf) /* Choose which underlying implementation to use. At least one must be * present or the perl is too early to handle this function */ # if defined(utf8n_to_uvchr) || defined(utf8_to_uvchr) || defined(utf8_to_uv) # if defined(utf8n_to_uvchr) /* This is the preferred implementation */ # define D_PPP_utf8_to_uvchr_buf_callee utf8n_to_uvchr # elif /* Must be at least 5.6.1 from #if above; \ If have both regular and _simple, regular has all args */ \ defined(utf8_to_uv) && defined(utf8_to_uv_simple) # define D_PPP_utf8_to_uvchr_buf_callee utf8_to_uv # elif defined(utf8_to_uvchr) /* The below won't work well on error input */ # define D_PPP_utf8_to_uvchr_buf_callee(s, curlen, retlen, flags) \ utf8_to_uvchr((U8 *)(s), (retlen)) # else # define D_PPP_utf8_to_uvchr_buf_callee(s, curlen, retlen, flags) \ utf8_to_uv((U8 *)(s), (retlen)) # endif # endif # if defined(NEED_utf8_to_uvchr_buf) static UV DPPP_(my_utf8_to_uvchr_buf)(pTHX_ const U8 * s, const U8 * send, STRLEN * retlen); static #else extern UV DPPP_(my_utf8_to_uvchr_buf)(pTHX_ const U8 * s, const U8 * send, STRLEN * retlen); #endif #if defined(NEED_utf8_to_uvchr_buf) || defined(NEED_utf8_to_uvchr_buf_GLOBAL) #ifdef utf8_to_uvchr_buf # undef utf8_to_uvchr_buf #endif #define utf8_to_uvchr_buf(a,b,c) DPPP_(my_utf8_to_uvchr_buf)(aTHX_ a,b,c) #define Perl_utf8_to_uvchr_buf DPPP_(my_utf8_to_uvchr_buf) UV DPPP_(my_utf8_to_uvchr_buf)(pTHX_ const U8 *s, const U8 *send, STRLEN *retlen) { UV ret; STRLEN curlen; bool overflows = 0; const U8 *cur_s = s; const bool do_warnings = ckWARN_d(WARN_UTF8); # if (PERL_BCDVERSION < 0x5026000) && ! defined(EBCDIC) STRLEN overflow_length = 0; # endif if (send > s) { curlen = send - s; } else { assert(0); /* Modern perls die under this circumstance */ curlen = 0; if (! do_warnings) { /* Handle empty here if no warnings needed */ if (retlen) *retlen = 0; return UNICODE_REPLACEMENT; } } # if (PERL_BCDVERSION < 0x5026000) && ! defined(EBCDIC) /* Perl did not properly detect overflow for much of its history on * non-EBCDIC platforms, often returning an overlong value which may or may * not have been tolerated in the call. Also, earlier versions, when they * did detect overflow, may have disallowed it completely. Modern ones can * replace it with the REPLACEMENT CHARACTER, depending on calling * parameters. Therefore detect it ourselves in releases it was * problematic in. */ if (curlen > 0 && UNLIKELY(*s >= 0xFE)) { /* First, on a 32-bit machine the first byte being at least \xFE * automatically is overflow, as it indicates something requiring more * than 31 bits */ if (sizeof(ret) < 8) { overflows = 1; overflow_length = (*s == 0xFE) ? 7 : 13; } else { const U8 highest[] = /* 2*63-1 */ "\xFF\x80\x87\xBF\xBF\xBF\xBF\xBF\xBF\xBF\xBF\xBF\xBF"; const U8 *cur_h = highest; for (cur_s = s; cur_s < send; cur_s++, cur_h++) { if (UNLIKELY(*cur_s == *cur_h)) { continue; } /* If this byte is larger than the corresponding highest UTF-8 * byte, the sequence overflows; otherwise the byte is less * than (as we handled the equality case above), and so the * sequence doesn't overflow */ overflows = *cur_s > *cur_h; break; } /* Here, either we set the bool and broke out of the loop, or got * to the end and all bytes are the same which indicates it doesn't * overflow. If it did overflow, it would be this number of bytes * */ overflow_length = 13; } } if (UNLIKELY(overflows)) { ret = 0; if (! do_warnings && retlen) { *retlen = overflow_length; } } else # endif /* < 5.26 */ /* Here, we are either in a release that properly detects overflow, or * we have checked for overflow and the next statement is executing as * part of the above conditional where we know we don't have overflow. * * The modern versions allow anything that evaluates to a legal UV, but * not overlongs nor an empty input */ ret = D_PPP_utf8_to_uvchr_buf_callee( (U8 *) /* Early perls: no const */ s, curlen, retlen, (UTF8_ALLOW_ANYUV & ~(UTF8_ALLOW_LONG|UTF8_ALLOW_EMPTY))); # if (PERL_BCDVERSION >= 0x5026000) && (PERL_BCDVERSION < 0x5028000) /* But actually, more modern versions restrict the UV to being no more than * what an IV can hold, so it could still have gotten it wrong about * overflowing. */ if (UNLIKELY(ret > IV_MAX)) { overflows = 1; } # endif if (UNLIKELY(overflows)) { if (! do_warnings) { if (retlen) { *retlen = D_PPP_MIN(*retlen, UTF8SKIP(s)); *retlen = D_PPP_MIN(*retlen, curlen); } return UNICODE_REPLACEMENT; } else { /* We use the error message in use from 5.8-5.26 */ Perl_warner(aTHX_ packWARN(WARN_UTF8), "Malformed UTF-8 character (overflow at 0x%" UVxf ", byte 0x%02x, after start byte 0x%02x)", ret, *cur_s, *s); if (retlen) { *retlen = (STRLEN) -1; } return 0; } } /* Here, did not overflow, but if it failed for some other reason, and * warnings are off, to emulate the behavior of the real utf8_to_uvchr(), * try again, allowing anything. (Note a return of 0 is ok if the input * was '\0') */ if (UNLIKELY(ret == 0 && (curlen == 0 || *s != '\0'))) { /* If curlen is 0, we already handled the case where warnings are * disabled, so this 'if' will be true, and so later on, we know that * 's' is dereferencible */ if (do_warnings) { *retlen = (STRLEN) -1; } else { ret = D_PPP_utf8_to_uvchr_buf_callee( (U8 *) /* Early perls: no const */ s, curlen, retlen, UTF8_ALLOW_ANY); /* Override with the REPLACEMENT character, as that is what the * modern version of this function returns */ ret = UNICODE_REPLACEMENT; # if (PERL_BCDVERSION < 0x5016000) /* Versions earlier than this don't necessarily return the proper * length. It should not extend past the end of string, nor past * what the first byte indicates the length is, nor past the * continuation characters */ if (retlen && (IV) *retlen >= 0) { unsigned int i = 1; *retlen = D_PPP_MIN(*retlen, curlen); *retlen = D_PPP_MIN(*retlen, UTF8SKIP(s)); do { # ifdef UTF8_IS_CONTINUATION if (! UTF8_IS_CONTINUATION(s[i])) # else /* Versions without the above don't support EBCDIC anyway */ if (s[i] < 0x80 || s[i] > 0xBF) # endif { *retlen = i; break; } } while (++i < *retlen); } # endif } } return ret; } # endif #endif #if defined(UTF8SKIP) && defined(utf8_to_uvchr_buf) #undef utf8_to_uvchr /* Always redefine this unsafe function so that it refuses to read past a NUL, making it much less likely to read off the end of the buffer. A NUL indicates the start of the next character anyway. If the input isn't NUL-terminated, the function remains unsafe, as it always has been. */ #ifndef utf8_to_uvchr # define utf8_to_uvchr(s, lp) \ ((*(s) == '\0') \ ? utf8_to_uvchr_buf(s,((s)+1), lp) /* Handle single NUL specially */ \ : utf8_to_uvchr_buf(s, (s) + UTF8_CHK_SKIP(s), (lp))) #endif #endif /* Hint: utf8_to_uvchr Use utf8_to_uvchr_buf() instead. But ONLY if you KNOW the upper bound of the input string (not resorting to using UTF8SKIP, etc., to infer it). The backported utf8_to_uvchr() will do a better job to prevent most cases of trying to read beyond the end of the buffer */ /* Replace utf8_to_uvchr with utf8_to_uvchr_buf */ #ifdef sv_len_utf8 /* Older Perl versions have broken sv_len_utf8() when passed sv does not have SVf_UTF8 flag set */ /* Also note that SvGETMAGIC() may change presence of SVf_UTF8 flag */ # if (PERL_BCDVERSION < 0x5017005) # undef sv_len_utf8 # if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) # define sv_len_utf8_nomg(sv) ({ SV *_sv2 = (sv); (SvUTF8(_sv2) ? Perl_sv_len_utf8(aTHX_ (!SvGMAGICAL(_sv2) ? _sv2 : sv_mortalcopy_flags(_sv2, SV_NOSTEAL))) : ({ STRLEN _len; SvPV_nomg(_sv2, _len); _len; })); }) # define sv_len_utf8(sv) ({ SV *_sv1 = (sv); SvGETMAGIC(_sv1); sv_len_utf8_nomg(_sv1); }) # else # define sv_len_utf8_nomg(sv) (PL_Sv = (sv), (SvUTF8(PL_Sv) ? Perl_sv_len_utf8(aTHX_ (!SvGMAGICAL(PL_Sv) ? PL_Sv : sv_mortalcopy_flags(PL_Sv, SV_NOSTEAL))) : (SvPV_nomg(PL_Sv, PL_na), PL_na))) # define sv_len_utf8(sv) (PL_Sv = (sv), SvGETMAGIC(PL_Sv), sv_len_utf8_nomg(PL_Sv)) # endif # endif # if defined(__GNUC__) && !defined(PERL_GCC_BRACE_GROUPS_FORBIDDEN) #ifndef sv_len_utf8_nomg # define sv_len_utf8_nomg(sv) ({ SV *_sv = (sv); sv_len_utf8(!SvGMAGICAL(_sv) ? _sv : sv_mortalcopy_flags(_sv, SV_NOSTEAL)); }) #endif # else #ifndef sv_len_utf8_nomg # define sv_len_utf8_nomg(sv) ((PL_Sv = (sv)), sv_len_utf8(!SvGMAGICAL(PL_Sv) ? PL_Sv : sv_mortalcopy_flags(PL_Sv, SV_NOSTEAL))) #endif # endif #endif #ifndef PERL_PV_ESCAPE_QUOTE # define PERL_PV_ESCAPE_QUOTE 0x0001 #endif #ifndef PERL_PV_PRETTY_QUOTE # define PERL_PV_PRETTY_QUOTE PERL_PV_ESCAPE_QUOTE #endif #ifndef PERL_PV_PRETTY_ELLIPSES # define PERL_PV_PRETTY_ELLIPSES 0x0002 #endif #ifndef PERL_PV_PRETTY_LTGT # define PERL_PV_PRETTY_LTGT 0x0004 #endif #ifndef PERL_PV_ESCAPE_FIRSTCHAR # define PERL_PV_ESCAPE_FIRSTCHAR 0x0008 #endif #ifndef PERL_PV_ESCAPE_UNI # define PERL_PV_ESCAPE_UNI 0x0100 #endif #ifndef PERL_PV_ESCAPE_UNI_DETECT # define PERL_PV_ESCAPE_UNI_DETECT 0x0200 #endif #ifndef PERL_PV_ESCAPE_ALL # define PERL_PV_ESCAPE_ALL 0x1000 #endif #ifndef PERL_PV_ESCAPE_NOBACKSLASH # define PERL_PV_ESCAPE_NOBACKSLASH 0x2000 #endif #ifndef PERL_PV_ESCAPE_NOCLEAR # define PERL_PV_ESCAPE_NOCLEAR 0x4000 #endif #ifndef PERL_PV_ESCAPE_RE # define PERL_PV_ESCAPE_RE 0x8000 #endif #ifndef PERL_PV_PRETTY_NOCLEAR # define PERL_PV_PRETTY_NOCLEAR PERL_PV_ESCAPE_NOCLEAR #endif #ifndef PERL_PV_PRETTY_DUMP # define PERL_PV_PRETTY_DUMP PERL_PV_PRETTY_ELLIPSES|PERL_PV_PRETTY_QUOTE #endif #ifndef PERL_PV_PRETTY_REGPROP # define PERL_PV_PRETTY_REGPROP PERL_PV_PRETTY_ELLIPSES|PERL_PV_PRETTY_LTGT|PERL_PV_ESCAPE_RE #endif /* Hint: pv_escape * Note that unicode functionality is only backported to * those perl versions that support it. For older perl * versions, the implementation will fall back to bytes. */ #ifndef pv_escape #if defined(NEED_pv_escape) static char * DPPP_(my_pv_escape)(pTHX_ SV * dsv, char const * const str, const STRLEN count, const STRLEN max, STRLEN * const escaped, const U32 flags); static #else extern char * DPPP_(my_pv_escape)(pTHX_ SV * dsv, char const * const str, const STRLEN count, const STRLEN max, STRLEN * const escaped, const U32 flags); #endif #if defined(NEED_pv_escape) || defined(NEED_pv_escape_GLOBAL) #ifdef pv_escape # undef pv_escape #endif #define pv_escape(a,b,c,d,e,f) DPPP_(my_pv_escape)(aTHX_ a,b,c,d,e,f) #define Perl_pv_escape DPPP_(my_pv_escape) char * DPPP_(my_pv_escape)(pTHX_ SV *dsv, char const * const str, const STRLEN count, const STRLEN max, STRLEN * const escaped, const U32 flags) { const char esc = flags & PERL_PV_ESCAPE_RE ? '%' : '\\'; const char dq = flags & PERL_PV_ESCAPE_QUOTE ? '"' : esc; char octbuf[32] = "%123456789ABCDF"; STRLEN wrote = 0; STRLEN chsize = 0; STRLEN readsize = 1; #if defined(is_utf8_string) && defined(utf8_to_uvchr_buf) bool isuni = flags & PERL_PV_ESCAPE_UNI ? 1 : 0; #endif const char *pv = str; const char * const end = pv + count; octbuf[0] = esc; if (!(flags & PERL_PV_ESCAPE_NOCLEAR)) sv_setpvs(dsv, ""); #if defined(is_utf8_string) && defined(utf8_to_uvchr_buf) if ((flags & PERL_PV_ESCAPE_UNI_DETECT) && is_utf8_string((U8*)pv, count)) isuni = 1; #endif for (; pv < end && (!max || wrote < max) ; pv += readsize) { const UV u = #if defined(is_utf8_string) && defined(utf8_to_uvchr_buf) isuni ? utf8_to_uvchr_buf((U8*)pv, end, &readsize) : #endif (U8)*pv; const U8 c = (U8)u & 0xFF; if (u > 255 || (flags & PERL_PV_ESCAPE_ALL)) { if (flags & PERL_PV_ESCAPE_FIRSTCHAR) chsize = my_snprintf(octbuf, sizeof octbuf, "%" UVxf, u); else chsize = my_snprintf(octbuf, sizeof octbuf, "%cx{%" UVxf "}", esc, u); } else if (flags & PERL_PV_ESCAPE_NOBACKSLASH) { chsize = 1; } else { if (c == dq || c == esc || !isPRINT(c)) { chsize = 2; switch (c) { case '\\' : /* fallthrough */ case '%' : if (c == esc) octbuf[1] = esc; else chsize = 1; break; case '\v' : octbuf[1] = 'v'; break; case '\t' : octbuf[1] = 't'; break; case '\r' : octbuf[1] = 'r'; break; case '\n' : octbuf[1] = 'n'; break; case '\f' : octbuf[1] = 'f'; break; case '"' : if (dq == '"') octbuf[1] = '"'; else chsize = 1; break; default: chsize = my_snprintf(octbuf, sizeof octbuf, pv < end && isDIGIT((U8)*(pv+readsize)) ? "%c%03o" : "%c%o", esc, c); } } else { chsize = 1; } } if (max && wrote + chsize > max) { break; } else if (chsize > 1) { sv_catpvn(dsv, octbuf, chsize); wrote += chsize; } else { char tmp[2]; my_snprintf(tmp, sizeof tmp, "%c", c); sv_catpvn(dsv, tmp, 1); wrote++; } if (flags & PERL_PV_ESCAPE_FIRSTCHAR) break; } if (escaped != NULL) *escaped= pv - str; return SvPVX(dsv); } #endif #endif #ifndef pv_pretty #if defined(NEED_pv_pretty) static char * DPPP_(my_pv_pretty)(pTHX_ SV * dsv, char const * const str, const STRLEN count, const STRLEN max, char const * const start_color, char const * const end_color, const U32 flags); static #else extern char * DPPP_(my_pv_pretty)(pTHX_ SV * dsv, char const * const str, const STRLEN count, const STRLEN max, char const * const start_color, char const * const end_color, const U32 flags); #endif #if defined(NEED_pv_pretty) || defined(NEED_pv_pretty_GLOBAL) #ifdef pv_pretty # undef pv_pretty #endif #define pv_pretty(a,b,c,d,e,f,g) DPPP_(my_pv_pretty)(aTHX_ a,b,c,d,e,f,g) #define Perl_pv_pretty DPPP_(my_pv_pretty) char * DPPP_(my_pv_pretty)(pTHX_ SV *dsv, char const * const str, const STRLEN count, const STRLEN max, char const * const start_color, char const * const end_color, const U32 flags) { const U8 dq = (flags & PERL_PV_PRETTY_QUOTE) ? '"' : '%'; STRLEN escaped; if (!(flags & PERL_PV_PRETTY_NOCLEAR)) sv_setpvs(dsv, ""); if (dq == '"') sv_catpvs(dsv, "\""); else if (flags & PERL_PV_PRETTY_LTGT) sv_catpvs(dsv, "<"); if (start_color != NULL) sv_catpv(dsv, D_PPP_CONSTPV_ARG(start_color)); pv_escape(dsv, str, count, max, &escaped, flags | PERL_PV_ESCAPE_NOCLEAR); if (end_color != NULL) sv_catpv(dsv, D_PPP_CONSTPV_ARG(end_color)); if (dq == '"') sv_catpvs(dsv, "\""); else if (flags & PERL_PV_PRETTY_LTGT) sv_catpvs(dsv, ">"); if ((flags & PERL_PV_PRETTY_ELLIPSES) && escaped < count) sv_catpvs(dsv, "..."); return SvPVX(dsv); } #endif #endif #ifndef pv_display #if defined(NEED_pv_display) static char * DPPP_(my_pv_display)(pTHX_ SV * dsv, const char * pv, STRLEN cur, STRLEN len, STRLEN pvlim); static #else extern char * DPPP_(my_pv_display)(pTHX_ SV * dsv, const char * pv, STRLEN cur, STRLEN len, STRLEN pvlim); #endif #if defined(NEED_pv_display) || defined(NEED_pv_display_GLOBAL) #ifdef pv_display # undef pv_display #endif #define pv_display(a,b,c,d,e) DPPP_(my_pv_display)(aTHX_ a,b,c,d,e) #define Perl_pv_display DPPP_(my_pv_display) char * DPPP_(my_pv_display)(pTHX_ SV *dsv, const char *pv, STRLEN cur, STRLEN len, STRLEN pvlim) { pv_pretty(dsv, pv, cur, pvlim, NULL, NULL, PERL_PV_PRETTY_DUMP); if (len > cur && pv[cur] == '\0') sv_catpvs(dsv, "\\0"); return SvPVX(dsv); } #endif #endif /* If this doesn't exist, it's not needed, so noop */ #ifndef switch_to_global_locale # define switch_to_global_locale() #endif /* Originally, this didn't return a value, but in perls like that, the value * should always be TRUE. Add a return to Perl_sync_locale() when it's * available. And actually do a sync when its not, if locales are available on * this system. */ #ifdef sync_locale # if (PERL_BCDVERSION < 0x5027009) # if (PERL_BCDVERSION >= 0x5021003) # undef sync_locale # define sync_locale() (Perl_sync_locale(aTHX), 1) # elif defined(sync_locale) /* These should be the 5.20 maints*/ # undef sync_locale /* Just copy their defn and return 1 */ # define sync_locale() (new_ctype(setlocale(LC_CTYPE, NULL)), \ new_collate(setlocale(LC_COLLATE, NULL)), \ set_numeric_local(), \ new_numeric(setlocale(LC_NUMERIC, NULL)), \ 1) # elif defined(new_ctype) && defined(LC_CTYPE) # define sync_locale() (new_ctype(setlocale(LC_CTYPE, NULL)), 1) # endif # endif #endif #ifndef sync_locale # define sync_locale() 1 #endif #endif /* _P_P_PORTABILITY_H_ */ /* End of File ppport.h */ ALTree-v1.3.2/CUtils/t/000077500000000000000000000000001412112337500144645ustar00rootroot00000000000000ALTree-v1.3.2/CUtils/t/ALTree-CUtils.t000066400000000000000000000007351412112337500171730ustar00rootroot00000000000000# Before `make install' is performed this script should be runnable with # `make test'. After `make install' it should work as `perl ALTree-CUtils.t' ######################### # change 'tests => 1' to 'tests => last_test_to_print'; use Test::More tests => 1; BEGIN { use_ok('ALTree::CUtils') }; ######################### # Insert your test code below, the Test::More module is use()ed here so read # its man page ( perldoc Test::More ) for help writing this test script. ALTree-v1.3.2/CUtils/t/double_permutation.t000066400000000000000000000020431412112337500205510ustar00rootroot00000000000000# Before `make install' is performed this script should be runnable with # `make test'. After `make install' it should work as `perl CUtils.t' ######################### # change 'tests => 1' to 'tests => last_test_to_print'; use Test::More tests => 3; use Test::Deep; BEGIN { use_ok('ALTree::CUtils') }; ######################### # Insert your test code below, the Test::More module is use()ed here so read # its man page ( perldoc Test::More ) for help writing this test script. $res=ALTree::CUtils::DoublePermutation(2,3, [0, 0.1]); is($res, undef, "undef when bad args"); $res=ALTree::CUtils::DoublePermutation(10, 2, [12.1, 432.2, 123.3, 15.4, 3453.5, 34253.6, 12.7, 23.8, 23.9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20] ); $p=0.00001; cmp_deeply($res, { "pmin" => num(0.2, $p), "chi2" => [ num(0.8, $p), num(0.1, $p)], "distrib_pmin" => [num(0.1, $p), num(0.1, $p), num(0 , $p), num(0.2, $p), num(0.2, $p), num(0.8, $p), num(0.6, $p), num(0.5, $p), num(0.4, $p), num(0.3, $p)] }, "double_permutation"); ALTree-v1.3.2/Changes000066400000000000000000000144231412112337500143150ustar00rootroot00000000000000Revision history for Altree Perl program Version v1.3.2 ============== Vincent Danjean (6): Avoid nested functions Use figlatex instead of texgraphicx Do not require atlas Remove unused _quicksort sub-pragma, no longer supported in Perl 5.27 Add missing include file Update perl XS files Remove old CVS ignore files New release Version v1.3.1 ============== Claire Bardel (1): No RCS version anymore, using 1.00 version by default Vincent Danjean (3): Avoid too precise tests with float datatypes Do not compute more permutation than requested, even with lots of processors New release Version v1.3.0 ============== Vincent Danjean (37): Merge RepeatAssociationQuali and RepeatAssociationQuanti Merge CleanCaseControl, CleanChi2 and CleanQuanti into CleanStats Add gitignore for build files Compute tree representation for efficient stat computation Fix depth computation Refactor code Cleanup C headers Cleanup headers Cleanup name in XS functions ClassicalChi2 as a C function with validation checks Remove perl version of ClassicalChi2 Cleanup and comments in CUtils, add debugging facilities move ALTree/Chi2.pm function into CUtils Rewrite CalculChi2 in C Rewrite Chi2 resampling in C Use Chi2 resampling accelerator... Run altree in tree for an example cleanup Manifest Fix "Use Chi2 resampling accelerator..." memory managed outside inner functions Parallel execution of Chi2 resampling Fix some compilation warnings and protect debugging code Do not compile with debug code by default Fix link so that all functions are found, even if TamuAnova is not loaded Get the R code source of the hypergeometric distribution Add missing MT-aware random functions Use internal mt19937ar_t per thread structure Use the hypergeometric distribution If ALTREE_PARALLEL is set to -1, all available CPU are used Increase compiler warning level Optimize rhyper.c for our use case Remove dependencies on PDL and PDL::GSL::CDF Cleanup version handling Update make-release for git Fix typo in function name Fix linkage for CUtils Bump version, new release Version v1.2.1 ============== Vincent Danjean (5): Update external perl modules Bump version Move to_rewrite.pm into ALTree namespace Update MANIFEST Ignore generated files in SVN Version v1.2 ============== Vincent Danjean (2): pour release 1.2 Pour release avec fix bug Version v1.1.1 ============== Vincent Danjean (3): changement adresse e-mail MacOSX does not handle files with different case For example, altree and ALTree can not be both existing Now, altree is moved into progs/ Version v1.1.0 ============== Claire Bardel (6): ajout de la fonctionalité: éliminer les haplotypes présents en moins de xxx examplaires commit avant la release de la 1.1.0 re-commit pré-release la dernière? la vraie dernière? correction meta-données (email, license) Vincent Danjean (32): check for .tar.gz before trying to create it Stop with an error when input file contains no tree prolongation -> no-prologation, à vérifier... ajout de FillQuanti (pas finie) et modif de ReadCorrespondQuanti doc verification que j'ai bien commité tout debuggage avec Vince bug tableaux fin de FillQuanti, ça marche modif de la doc pour rapporteurs parcoursQuanti et CalculAnova modifiées mais pas finies (non testées) pb avec l'appel de tamuanova bash completion correction bash_completion modif dans la lecture de l'arbre suite adaptation en quanti: affichage marche, pas la permutation Youhou! Ca tourne en quanto anova 1 facteur Qualitatif: correction bugs, déplacement de code et suite du développement ajout du quantitatif pour phase/paup dans altree-convert ajout quanti dans altree-add-S récupération de la distrib de pmin un reste de cvs Ajout de la possibilité de traiter plusieurs fichiers conjointement ajout de nanova.pm Correction de FillHeight Calcul de la matrice d'un arbre correction de bug de la localisation du fait de la modif 9 fichiers correction bug sur all_file foret, calcul des Vi pour tous fichiers Version v1.0.1 ============== Vincent Danjean (9): make-release to create a release Correct make-release for META.yml Check for already existing version earlier modification du numero de version dans le MAKEFILE.PL Version v1.0.0 ============== Vincent Danjean (77): résolution du pb des _ dans les noms, plus de flexibilité dans les noms On garde root selection des arbres selection des arbres (correction bugs) paup exemples phylip/paml exemples bug mineur debut reorg run_altree lecture refaite restructuration Input no CI altree un peu mieux option output-file options correction version paup ignore le root supplémentaire inutile (comme phylip) Deletetion of old Documentation/example_files/ Version 1.0.0 Release 1.0.0 Version v0.9.2 ============== Vincent Danjean (34): Amélioration README Alphy tourne en localisation Renommage chi2.pm en Alphy::Chi2.pm change warn for warning orrection du chemin e la bib cutils lgne 1880 modification in alphy-add-S Addition of example files for case control data prog avec pb ligne 570 plein de modifs partout pour adapter à phylip modifs dans alphy-add-S: il prend les nb cas/controle dans correspond.txt maintenant modifs dans alphy-add-S: opt-s est devenu opt-e doc version fix tests version man alphy-add-S début de man pour alphy-add-S et alphy-convert file to ignore modif du manuel version 0d Switching Alphy to ALTree Version v0.01 ============== Vincent Danjean (8): original version; created by h2xs 1.23 with options -AX -n Alphy::Utils initial import ajout du .bib cvs2svn (1): New repository initialized by cvs2svn. 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\usepackage[latin1]{inputenc}% pour pouvoir taper des accents directement \usepackage[T1]{fontenc}% jolie fontes \usepackage{color}% Pour la couleur (mais pourquoi je l'ai mis ! : % pour xfig) %\usepackage{colortbl}% Pour faire des tableaux avec des cases colorees \usepackage{subfigure}% Pour faire des figures en plusieurs parties \usepackage{boxedminipage}% Pour faire des boxedminipage \usepackage{xspace}% Pour les espaces à la fin des macros \usepackage{amssymb} % \usepackage{times} % Pareil \usepackage{float} % Pour le positionnement H de figure \usepackage{vmargin} % \usepackage{url} % \usepackage{amsmath} \usepackage{threeparttable} % pour les notes dans les tables \usepackage[square]{natbib} \usepackage{lscape} \usepackage{placeins} \usepackage{fancyhdr} \usepackage{url} \usepackage{setspace} \usepackage{alltt} \usepackage{tabularx} \sloppy %\doublespacing %%%%%%%%%%%%%%%%% COMMANDES %%%%%%%%%%%%%%%%%%%%%%%%%%%%% \newcommand{\mysinglespace}{\def\baselinestretch{1.1}} \newcommand{\mydoublespace}{\def\baselinestretch{1.6}} \newcommand{\treevolve}{\texttt{TREEVOLVE}\xspace} \newcommand{\phase}{\texttt{phase}\xspace} \newcommand{\famhap}{\texttt{FamHap}\xspace} \newcommand{\paup}{\texttt{paup}\xspace} \newcommand{\phylip}{\texttt{phylip}\xspace} \newcommand{\paml}{\texttt{paml}\xspace} %TODO est-ce que phyml s'écrit comme ça ? \newcommand{\phyml}{\texttt{phyml}\xspace} \newcommand{\altree}{\texttt{ALTree}\xspace} \renewcommand{\thetable} {\rm\Roman{table}} \renewcommand{\thefigure} {\rm\Roman{figure}} \newcommand{\newchitree}{\texttt{ALTree}\xspace} \newcommand{\etHTname}{altree-add-S} \newcommand{\etHT}{\texttt{ALTree-add-S}\xspace} \newcommand{\rechaploname}{altree-convert} \newcommand{\rechaplo}{\texttt{ALTree-convert}\xspace} \newcommand{\acctran}{\texttt{acctran}\xspace} \newcommand{\deltran}{\texttt{deltran}\xspace} \newcommand{\chisquare}{chi-square\xspace} \newcommand{\chisquares}{chi-squares\xspace} \newcommand{\cmd}[1]{\textit{#1}} \newcommand{\fn}[1]{\textbf{#1}} \newcommand{\prog}[1]{\texttt{#1}} \newcommand{\code}[1]{\texttt{#1}} \newcommand{\ucode}[1]{\code{\textit{#1}}} \newcommand{\ccode}[1]{\code{\textbf{#1}}} \newcommand{\commande}[1]{\texttt{#1}} \newenvironment{source}{% \begin{alltt}% }{% \end{alltt}% } \newenvironment{options}[1][l]{% \noindent% \bgroup% \newcommand{\option}[2]{% \code{##1}& ##2 \\% } \tabularx{\linewidth}{@{}#1X@{}} }{% \endtabularx \egroup% } %%%%%%%%%%%%%%%%% \begin{document} \pagestyle{empty} \pagestyle{myheadings} \title{ALTree: Association and Localisation tests using haplotype phylogenetic Trees } \author{Claire Bardel, Vincent Danjean, Pierre Darlu and Emmanuelle Génin} \date{Version 1.2} \maketitle \tableofcontents \chapter{Introduction} \section{What's new?} \paragraph{Problem with PAUP*} It seems that PAUP* does not run anymore on recent versions of Linux. We have not tested windows or MacOS version. If PAUP* does not work on your system, example files using PAUP* (in the paup directory) will not run because PAUP* output files will not be produced. \paragraph{Version 1.1.0: modification of \newchitree and \etHT to deal with quantitative data} The software now deals with quantitative data. For the association test, series of one-way ANOVA are performed instead of the homogeneity tests. For the localisation test, only the definition of the S character is different for quantitative traits. Currently, \rechaplo has not been modified and does not deal with quantitative data. \section{Overview of the software} This software is designed to perform phylogeny-based analysis: first, it allows the detection of an association between a candidate gene and a disease or a quantitative trait, and second, it enables us to make hypothesis about the susceptibility loci. %\section{Copyright} It contains three programs: \newchitree, \rechaplo and \etHT. The connections between these programs are described in Figure~\ref{fig:altree} %\section{Short description of the programs available in \altree} \begin{figure}[htbp] \includegraphics[width=\linewidth]{overview.fig}\centering \caption{\altree programs} \label{fig:altree} \end{figure} This program is copyrighted (c) by Claire Bardel and Vincent Danjean and is distributed under the GNU General Public License. You are free to re-distribute it under the same license. This software comes with no warranty whatsoever. If you encounter any problem, please, send a bug report to Claire Bardel at the following e-mail: Claire.Bardel@univ-lyon1.fr %The complete text of the GNU General Public %License can be found in the annexe~\ref{GPL} on page~\pageref{GPL}. \subsection{\newchitree} \subsubsection{Association test} The test consists in performing series of nested tests at different level of a phylogenetic tree. These tests compare either the number of cases and controls (for case/control data) in the different groups (or clades) defined on the tree or the variance of the trait within each clade to the variance between these different clades (for quantitative data). The nested algorithm is detailed on Figure~\ref{fig:nesting_algo} (figure from \citet{Bardel05}, slightly modified). Then, a global p-value is calculated for the tree by using a permutation procedure such as the one described by \citet{Ge03} and \citet{Becker04}. \begin{figure}[h] \begin{center} \includegraphics[width=0.8\linewidth]{altree-q.fig} \caption{Description of the nested clade analysis (without the permutation procedure)} \label{fig:nesting_algo} \end{center} \vspace{-0.4cm} {\small (A) shows the homogeneity test or the ANOVA performed at level k (between clades $C_1$ and $C_2$). Then (B), a test will be performed at the following level (k+1), between all the sub-clades descending from clades $C_1$ and $C_2$, i.e between clades $C_{1.1}$, $C_{1.2}$, $C_{2.1}$ and $C_{2.2}$. % If it is % significant the analysis ends because an association is detected. % When the permutation procedure is used, all the tests are considered % as non significant and the p-values are evaluated \textit{a posteriori}. } \end{figure} \subsubsection{Localisation of the susceptibility loci} To perform the localisation analysis, for each haplotype $h$, the user must previously define a new character (called character $S$) whose state depends on the proportion of cases (resp. individual with high quantitative trait values) carrying haplotype $h$ and optimise it on the haplotype phylogeny. The program \newchitree then looks for sites that co-mutates with the character $S$ by calculating a co-mutation index called $V_{i}$ for each site $i$ and for each character state transition ($0 \rightarrow 1$ for example). The higher the $V_{i}$, the higher the probability of $i$ being the susceptibility site. \bigskip The method implemented in \newchitree has been fully described in~\citet{Bardel05}. Please refer to this article for a more complete description. \subsection{\rechaplo} Before running \newchitree, you will generally have to reconstruct haplotypes %(see section \ref{sec:require} for a description of usable %programs). The output of the haplotype reconstruction programs are totally different from the input files necessary for the phylogenetic reconstruction programs. \rechaplo was then written to convert the outputs of haplotype reconstruction programs to input files for phylogenetic reconstruction programs. It may be particularly useful if you want to use \paup because \paup has a very high number of options. If you use \rechaplo, an input file with all the options necessary to further run \newchitree is produced. Currently, \rechaplo can deal with two haplotype reconstruction programs: \phase~\citep{Stephens01, Stephens03} and \famhap~\citep{Becker04} and can produce files for three phylogeny reconstruction programs: \paup~\citep{Swofford02}, \phylip~\citep{Felsenstein04} and \paml~\citep{YangPAML}. \subsection{\etHT}\label{description_etiquette} \enlargethispage{1cm} To perform the localisation analysis, a new character $S$ must be added to each haplotype $h$. The state of $S$ depends on the proportion of cases (resp. individual with high quantitative trait values) carrying the haplotype $h$. You can use your own criterion to determine the state of $S$ and add it manually to the input file of the phylogeny reconstruction program that will optimise the character states changes on the tree. If you do not want to add the character $S$ manually, you can use \etHT. For case/control data, the state of the character $S$ is allocated depending on the proportion ($p_h$) of cases carrying the haplotype $h$ compared to the proportion $p_0$ of cases in the whole sample. \begin{itemize} \item if $p_h < p_0-\epsilon\sqrt{\frac{p_h\times(1-p_h)}{n_h}}$, $S$ is coded ``C'' or ``0'' (high number of controls); \item if $p_h > p_0+\epsilon\sqrt{\frac{p_h\times(1-p_h)}{n_h}}$, $S$ is coded ``G'' or ``1'' (high number of cases); \item else, $S$ is coded ``?'' (undetermined). \end{itemize} with $n_h$ being the number of individuals carrying the haplotype $h$. For quantitative data, the state of ``S'' depends on the mean of the quantitative trait in a given branch of the tree $\mu$, the mean of the quantitative trait in the whole data set $\mu_0$ and the standard deviation of the quantitative trait in the whole data set, $\sigma_0$. \begin{itemize} \item if $\mu> \mu_0 + \epsilon \times \displaystyle{\frac{\sigma_0}{\sqrt{n}}}\quad$ ``S'' is coded ``H'' (high level); \item if $\mu< \mu_0 - \epsilon \times \displaystyle{\frac{\sigma_0}{\sqrt{n}}}\quad$ ``S'' is coded ``L'' (low level); \item else, ``S'' is coded ``?'' (undetermined) \end{itemize} $n$ being the sample size, and $\epsilon$, an inflation coefficient to be chosen by the user. \subsection{Computation time (in 2005)} We measured the computation time on a Pentium III, 930 MHz, 512 Mo of RAM. We used a data set of 363 individuals (cases and controls) genotyped for 7 SNPs defining 33 different haplotypes. The reconstructed phylogenetic tree had 6 levels. On this data set, the association test runs in about 24 hours (p-value evaluated by 100~000 permutations, the complexity of the program being linear with respect to the number of permutations). The localisation test runs in about 10 seconds (2~000 equiparsimonious trees analysed, the complexity of the program being linear with respect to the number of analysed trees). In fact, for the association test, the computation time increases with the number of permutation and with the number of levels in the tree (the number of levels being tightly linked to the number of haplotypes in the data sets, which depends on the number of SNPs and of the LD between the SNPs). We tested the software for up to 1000 SNPs corresponding to 417 haplotypes. In this case, the association test runs in about 6 minutes (for one permutation only). Three to four minutes should be added per supplementary permutation. With such a data set, we can see that the evaluation of the p-values with the permutation procedure (10~000 to 100~000 are required) is not realistic on this kind of computer. However, the software can be used to look for association without using the permutation procedure. The localisation test runs very quickly and depends on the number of equiparsimonious trees analysed. On the data set with 1000 SNPs, the localisation test runs in 10 seconds for one tree. \chapter{Installing the software} The software can run on various Linux/Unix platform. %and on MacOS X. \section{Requirements} \label{sec:require} \subsection{Phylogeny reconstruction programs} Before using \altree, you must build a phylogeny of the haplotypes. Three phylogeny software are compatible with our program: \begin{itemize} \item \paup~\cite{Swofford02}: available at \url{http://paup.csit.fsu.edu/}. This software is not free software and must be purchased (100\$ for the unix version). \item \phylip~\cite{Felsenstein04}: freely available at \url{http://evolution.genetics.washington.edu/phylip.html} (only usable for the association test) \item \paml~\cite{YangPAML}: freely available at \url{http://abacus.gene.ucl.ac.uk/software/paml.html}. As stated by its author, \paml is not good at tree making. So we advise you to use another software to build the tree (for example, \phyml~\cite{Guindon03} and then to use \paml to estimate the character states at each node. \end{itemize} \textit{\paragraph{Note:} Currently, only the outputs from the parsimony method implemented in \paup (command \texttt{set}, option \texttt{criterion} set to ``parsimony'') and in \phylip (program \texttt{mix}) are compatible with our software. If you want to use maximum likelihood (ML), we suggest you to use your favorite software to compute the ML tree and then, to use \paml to estimate the character states at each node. } \subsection{Required tools} \prog{perl} is required to run \altree. \prog{perl} version 5.8.7 or higher should work. Lower versions can work, but they have not been tested. If you want to build the program from sources, you will also need a C compiler such as \prog{gcc} and the GNU \prog{make} program. They are available on most Unix plateforms. Otherwise, a debian package containing the binary files is available.%For MacOS X, \prog{gcc} and %\prog{make} are available with other tools on the development CD of %the OS. \section{Installation on a linux platform} To install this module type the following:\\ \begin{source} perl Makefile.PL make make test make install \end{source} \noindent If you prefer to install it in your home directory, then type the following: \begin{source} perl Makefile.PL PREFIX=~ make make test make install \end{source} \noindent In this case, do not forget to add \verb+~+\prog{/bin} in your \prog{PATH} and \verb+~+\prog{/lib/perl/\textit{perl\_version}/} in \prog{PERL5LIB} if they are not already present. For example: \begin{source} PATH=~/bin:$PATH export PATH PERL5LIB=~/lib/perl/5.8.7/:$PERL5LIB export PERL5LIB \end{source} \vspace{0.5cm} %Inclure les differentes platformes sur lesquelles ça tourne.\\ %Voir avec Vince; installation des bibliothèques perl, installation de la bibliothèque C. Avec Linux, paquet debian dispo sur page Vince. Voir si on peut compiler le C pour windows et/ou macOSX. \chapter{\rechaplo } This program converts the output of the haplotype reconstruction programs to input for phylogeny reconstruction programs. Each option has a long name (which must be preceded by -{}-) and some of them also have a short name (which must be preceded by -). \section{Summary of the different options} \begin{options} \option{-{}-version}{program version} \option{-{}-short-help|-h}{brief help message} \option{-{}-help}{help message with option descriptions} \option{-{}-man}{full documentation} \option{-{}-first-input-file|-i \ucode{file}}{Input file 1} \option{-{}-second-input-file|-j \ucode{file}}{Input file 2 (not mandatory, see explanations below)} \option{-{}-output-file|-o \ucode{file}}{Output file 1} \option{-{}-case-control-output|-c \ucode{file}}{Output containing the number of cases/controls} \option{-{}-reconstruct-prog|-r \ccode{phase|famhap}}{Name of the haplotype reconstruction program} \option{-{}-phylo-prog|-p \ccode{paup|phylip}}{Name of the phylogeny reconstruction program} \option{-{}-data-type|-t \ccode{DNA|NUM}}{Type of data: DNA (ATGCU) or NUM (0-9)} \end{options} \section{How to get help?}\label{help} \subsection{option -{}-short-help or -h} This option displays a short help message which recapitulates all the options available. \subsection{option -{}-help} This option displays a message with a description of the different options. \subsection{option -{}-man} This option displays the man page for the program. \subsection{option -{}-version} This option gives the number of the version currently used. \section{Input files} This program takes as input files the output files of the haplotype recontruction programs. Currently, only \phase (for case/control data) and \famhap (for family data) output files are allowed, but we plan to extend the number of haplotype recontruction programs usable. The name of the haplotype reconstruction program used to generate the input files must be specified after the -r option. \subsection{Using \phase output file} Two different cases must be considered: \begin{itemize} \item The case-control status of each individual has been specified in the input file for phase and phase has been run with the -c-1 option. In this case only one input file is necessary for \rechaplo: the phase output file (let's call it out.phase). In this case, the program must be run like this: \\ \begin{source} \rechaploname -r \ccode{phase} -i \ucode{out.phase} -other\_options \end{source} \item The case-control status of each individual has not been specified in the input file for phase. In this case, two input files are necessary: the phase output file (out.phase) and another file which specifies the disease status for each individual (status.phase). This file consists in two rows: the first contains the individual's ID and the second, their disease status (0=control, 1=case). In this case, the program must be run like this: \\ \begin{source} \rechaploname -r \ccode{phase} -i \ucode{out.phase} -j \ucode{status.phase} -other\_options \end{source} \end{itemize} \subsection{Using \famhap output files} The program \rechaplo is designed to use files generated with \famhap15 (and not with \famhap12!), \famhap16 has not been tested yet. Two options are necessary: \begin{description} \item [dp] : to take the disease status into account in the haplotype reconstruction \item [P] : to make sure that all the haplotypes are present in the output file \end{description} Two input files are necessary for \rechaplo: the \famhap output file whose name has been chosen by the user (let's call it out.famhap), and the output file called input\_name\_H1\_HAPLOTYPES. In this case, the program must be run like this: \\ \begin{source} \rechaploname -r \ccode{famhap} -i \ucode{out.famhap} -j \ucode{H1\_HAPLOTYPES} -other\_options \end{source} \section{Output files} Two different output files are generated: \begin{description} \item [The main output file. ] Its name should follow the -o option. This file is an input file for the phylogeny reconstruction programs \paup, \paml or \phylip. \item [The second output file. ] Its name should follow the -c option. It contains the number of times a given haplotype is carried by case and control individuals. \end{description} %wo kinds of output files can be generated depending on the phylogeny %econstruction program you want to use (\paml and \phylip use the same %ype of input files). The name of the phylogeny reconstruction program should follow the -p option. \subsection{Generating \paup input files (*.paup)} The file generated is a nexus file containing the options for \paup necessary to run \newchitree after \paup. This is only an example of a paup file: we choose to root the tree using an ancestral sequence, but this is not necessary and this file should be modified according to your data. Examples of \paup input files can be found in the test directory: they are labeled *.paup. %In the output file, the name of each haplotype is formed by the %concatenation of an haplotype number (Hxxx), and of the number of %cases (mxxx) and controls (cxxx) carrying this haplotype. %A character %is added to each haplotype: its state is 2 or C for all the haplotypes %and must be set to 1 or G for the ancestral sequence. This character %is set only to be sure that the phylogeny reconstruction program %correctly draw the tree. It does not change the results of the %analysis, and it can be removed from the file. The output file is not a valid \paup input file. Some options are indicated within square brackets and must be specified by the user before running \paup: \begin{itemize} \item the sequence of the ancestral haplotype \item the maximum number of trees \paup must find \item the method to optimise character state changes (\acctran/\deltran) \item the name of the different files generated \item the number of trees described by paup in the log file (we advise you to keep all the trees, and to limit the number of trees that are analysed later, when running \newchitree). \end{itemize} The chosen option must be put out of the square brackets because \paup ignores what is written within square brackets. \subsection{Generating \phylip or \paml input files (*.phy)} The file generated is the simplest phylip (also used by \paml) format. The first line contains the number of haplotypes and the number of sites and the following lines contains an identifier for the haplotype (Hxxx) and the haplotype sequence. %A character is added to each %haplotype: its state is 0 or C for all the haplotypes and must be set %to 1 or G for the ancestral sequence. This character is set only to be sure that the phylogeny reconstruction program correctly draw the tree. It does not change the results of the analysis, and it can be removed from the file. %In this file, you must either add the sequence of the ancestral haplotype in %the file out.phylip and prepare a file named ``ancestors'' containing this %sequence (don't forget to add the character 1 at the end of the %sequence), or eliminate this sequence and modify the number of %sequences accordingly if you want to use an outgroup to root the tree. \subsection{The second output file}\label{description_correspond} The name of the second output file must follow the -c option. This file contains the number of times a given haplotype is found in cases and controls. The file format is the following: the label of each haplotype and the number of cases and controls carrying it are specified, separated by spaces or tabulations. The number of cases carrying a given haplotype is preceded by the letter ``m'' and the number of controls is preceded by the letter ``c''. Example of such a file: \\ \begin{tabular}{ccc} H002 & m015 & c001\\ H003 & m000 & c001\\ H001 & m000 & c002\\ %H000\_anc & m000 & c000\\ \end{tabular} Other examples may be found in the test directory. These files are always labeled ``nb\_cas\_control.txt''. \section{Other options} \subsection{The phylogeny reconstruction program} You must specify the name of the phylogeny reconstruction software that will be used after the option -p or -{}-phylo-prog option so that the corresponding output file can be generated. \subsection{The haplotype reconstruction program} The name of the haplotype reconstruction program (\famhap or \phase) must be specified after the option -r or -{}-recontruct-prog. \subsection{The type of data} The user must specify if the data are of type DNA (ATGC) or NUM (number from 0 to 9, for the current version of the program, numbers superior to 9 cannot be used). It must be specified after the -r option. %\subsection{Name of the main output file} %With the -o option, the user chooses the name of the output file. If -o is omitted, the standard output will be used. \chapter{\etHT} This program adds a new character (named $S$) to each haplotype corresponding to its disease status. Each option has a long name (which must be preceded by -{}-) and some of them also have a short name (which must be preceded by -). \section{Summary of the different options} \begin{options} \option{-{}-version}{program version} \option{-{}-short-help|-h}{brief help message} \option{-{}-help}{help message with option descriptions} \option{-{}-man}{full documentation} \option{-{}-first-input-file|-i \ucode{file}}{Input file 1} \option{-{}-second-input-file|-j \ucode{file}}{Input file 2: nb cases/controls per haplotype} \option{-{}-output-file|-o \ucode{file}}{Output file} %-r & Haplotype reconstruction program\\ \option{-{}-epsilon|-e \ucode{number}}{$\epsilon$ parameter} \option{-{}-data-type|-t \ccode{DNA|SNP}}{data type: SNP or DNA} \option{-{}-proportion|-p \ucode{number}}{proportion of cases in the sample} \option{-{}-data-qual|q \ccode{qualitative|quantitative}}{data type: qualitative or quantitative} \option{-{}-outgroup|-g \ucode{outgroup\_name}} {Name of the outgroup (if necessary)} \option{-{}-low|-l}{forces the state of character $S$ to be ``?'' for haplotypes carried by 1 individual} \end{options} %\section{Description} %This program use a paup input file (input.paup) as input file, and generate a new paup input file (input\_et.paup) after having added a new character S to each haplotype. % %S excluded from the reconstruction of the tree, but included for the apomorphy recontrsuction -> modif of the paup block %les 2 facon de coder le caractere S. %Pb pour 1 ind. \section{How to get help?} See the same section for the program \rechaplo (page \pageref{help}). \section{Input files } \subsection{The sequence file (-i option)} The name of the input file containing the sequences must be specified after the -i option. This input file must be a valid \paup (nexus) or \phylip/\paml input file. If it is a \paup file, make sure that the line following the description of the last haplotype in the data block includes a semi colon only. \subsection{The trait file (-j option)} The name of the file containing informations about the trait must be specified after the -j option. \begin{itemize} \item If your trait is quantitative, the file must contain haplotype labels followed by the quantitative values measured for the individuals carrying these haplotypes. or homozygous individuals, quantitative values must be repeated twice; \item If your data are qualitative, the file must contain haplotype labels folled by the number of cases and controls carrying this haplotype separated by spaces or tabulations. The number of cases should be preceded by a "m" (or the word "case", possibly followed by a "$\_$"), the number of controls should be preceded by the letter "c" (or the word "control", possibly followed by a "$\_$"). \end{itemize} Examples: \begin{minipage}{0.45\linewidth} \begin{center} \begin{tabular}{ccc} \multicolumn{3}{c}{Case/control data}\\ H002 & m12 & c5 \\ H019 & m2 & c6 \\ H007 & m54 & c78 \\ \end{tabular} \end{center} \end{minipage} \begin{minipage}{0.45\linewidth} \begin{center} \begin{tabular}{ccccc} \multicolumn{3}{c}{Quantitative data}\\ H008 & 9.54 & 11.45\\ H005 & 7.73 & 11.43 & 10.6 & 13.8\\ H018 & 8.98 \\ \end{tabular} \end{center} \end{minipage} \section{Output file (-o option)} The name of the output file can be specified after the -o option. If the -o option is not present, the standard output is used. The output file is a \paup or \paml input file. The character $S$ is coded ``G'' or ``1'' for cases or high values of the quantitative trait and ``C'' or ``0'' for controls or low values of the quantitative trait. In the \paup input file generated, a new command is added, which excludes the character $S$ from the tree reconstruction process, and includes it in the table of apomorphies. If you want to use \paml, no such command exists. We advise you to reconstruct the phylogeny on the data set without the character $S$ by using your favorite phylogeny reconstruction program. Then, you give that tree and the data-set with the S-character to \paml to obtain the apomorphie list. \section{Other options} \subsection{Proportion of cases in the sample (qualitative data only)} The proportion of cases in the sample must be specified after the -p option. \subsection{The epsilon value} It corresponds to the parameter $\epsilon$ (see the description of the program in section \ref{description_etiquette}, page \pageref{description_etiquette}). If $\epsilon$ is high, haplotypes will more often have a character $S$ coded ``?''. To give an idea, in our article~\citep{Bardel05}, $\epsilon$ was set to 1. \subsection{Data type: sequence} The -t option must be followed either by \cmd{SNP} or by \cmd{DNA}. \cmd{SNP} should be used if you have numerical data (characters coded from 0 to 9). \cmd{DNA} must be used if you have DNA data (A, T, G, C). \subsection{Data type: trait} The software can deal with qualitative data (case/control) or quantitative data. The -q (or --data-qual) option must be followed by either \cmd{qualitative} or \cmd{quantitative}, depending on your data. \subsection{Haplotypes carried by only 1 individual} The -l option is not mandatory: if it is present, $S$ is coded ``?'' for all the haplotypes present only once in the sample, whatever the disease status of the individual carrying it. If -l is not specified, the state of $S$ will be chosen according to the formula (see section \ref{description_etiquette}, page \pageref{description_etiquette}). \subsection{Name of the outgroup} If the outgroup is not specified in the file containing the number of cases an controls but is in the file containing the sequences, the name of the outgroup must be provided to \etHT so that the program can identify the outgroup sequence. For this sequence, the state of the character $S$ will be ``?''. \chapter{\newchitree} This program can perform either an association test or a localisation test. Each option has a long name (which must be preceded by -{}-) and some of them also have a short name (which must be preceded by -). \section{Summary of the different options} \begin{options}[p{.54\linewidth}] \option{-{}-version}{program version} \option{-{}-short-help|-h}{brief help message} \option{-{}-help}{help message with option descriptions} \option{-{}-man}{full documentation} \option{-{}-association|-a}{perform the association test} \option{-{}-s-localisation|-l}{perform the localisation test} \option{-{}-first-input-file|-i \ucode{file}}{output file from phylogeny program} \option{-{}-second-input-file|-j \ucode{file}}{nb cases/controls per haplotype} \option{-{}-output-file|-o \ucode{file}}{output file} \option{-{}-data-type|-t \ccode{DNA}|\ccode{SNP}}{type of data} \option{-{}-data-qual|-q \hspace*{\fill}\ccode{qualitative|quantitative}}{data type: qualitative or quantitative} \option{-{}-remove-outgroup }{remove the outgroup sequence for the analysis} \option{-{}-outgroup \ucode{outgroup\_name}}{specify the name of the outgroup sequence} \option{-{}-anc-seq \ucode{ancestral\_sequence}}{ancestral sequence (only useful with \phylip)} \option{-{}-tree-building-program|-p \hspace*{\fill}\ccode{PHYLIP}|\ccode{PAUP}|\ccode{PAML}}{phylip or paup or paml} %\option{-{}-splitmode|-s \ccode{nosplit}|\ccode{chi2split}}{} \option{-{}-no-prolongation}{no prolongation of branches} \option{-{}-chi2-threshold|-n \ucode{value}}{threshold value} \option{-{}-permutations|-r \ucode{number}}{number of permutations to perform} \option{-{}-number-of-trees-to-analyse \ucode{number}}{total number of trees to analyse} \option{-{}-tree-to-analyse \ucode{number}}{number of the tree to analyse} \option{-{}-s-site-number \ucode{number}}{position of the $S$ character in the sequence} \option{-{}-s-site-characters \hspace*{\fill}\ucode{anc\_state}\ccode{->}\ucode{der\_state}}{ancestral state -> derived state for $S$} \option{-{}-co-evo|-e \ccode{simple}|\ccode{double}}{simple or double} \option{-{}-print-tree}{print the tree with the character state changes in the output file} \end{options} \section{How to get help?} See the same section for the program \rechaplo (page \pageref{help}). \section{General options} These options are used both for association and for localisation test. \subsection{First input file (option -{}-first-input-file or -i)} This file is the output file of the phylogeny reconstruction program. \subsubsection{If \paup is used} To run \newchitree, some informations must be present in the input file for \newchitree (=output file of \paup). In particular, the apomorphy list and a table contining branch lengths must be present (though branch lengths are not taken into account in the analysis, they are juste used to check if they are consistent with the apomorphy list). For these information to be present, in the \cmd{describetrees} command you must use the following options: \cmd{brlens=yes} and \cmd{apolist=yes}. Examples of \paup input files containing the options necessary to run \newchitree are provided in the \code{test/paup} directory. These files are labeled \fn{*.paup}. \subsubsection{If \phylip is used} The input file for \newchitree is the output file named ``outfile'' by \phylip. Currently, \newchitree only works with output data from the program \texttt{MIX} (0/1 data). We plan to adapt it to other reconstruction program. To generate a correct input file for \newchitree, you must use different options for \phylip depending on your rooting method: \begin{itemize} \item If you want to root the tree using an outgroup: you must root the tree on the chosen outgroup by using the option \cmd{o}. \item If you want to root the tree using the ancestral character states: you have to prepare a file named \fn{ancestors} containing the ancestral sequence. Then, when running \phylip, you must use the option \cmd{a} (see the \phylip manual for more information).\\ %To run \newchitree, the ancestral sequence must be present in the sample, so we advise you to root the tree using this ancestral sequence as outgroup by using the option \cmd{o}. \\ % In this case, you will have to use the option ``-{}-anc-seq'' when running \newchitree. \end{itemize} Moreover, the states at all nodes of the tree must appear in the output file, so you must set the option \cmd{5} to \cmd{yes}. \subsubsection{If \paml is used} The input file for \newchitree is the output file named ``rst'' by \paml. \subsection{The trait input file (option -{}-second-input-file or -j)} If you analyze case/control data, this input file consists in lines containing the label of each haplotype followed by the number of cases and controls carrying it separated by spaces or tabulations. The number of cases should be preceded by a ``m``(or the word ``case'', possibly followed by a ``\_''), the number of controls should be preceded by the letter ``c'' (or the word ``control'', possibly followed by a ``\_'').\\ Example of such files are given in the test directory. These files are always labeled \fn{nb\_cas\_control.txt}. If your trait is quantitative, the file must contain haplotype labels followed by the quantitative values measured for the individuals carrying these haplotypes. or homozygous individuals, quantitative values must be repeated twice. \subsection{Output file (option -{}-output-file or -o)} You can choose the name of the output file by using the -{}-output-file or -o option. If this option is not specified, the standard output is used. \subsection{Name of the phylogeny program used (option -{}-tree-building-program or -p )} After the option -p, you must specify which phylogeny reconstruction program (\paup, \phylip or \paml) was used to generate the first input file. \subsection{Data type: sequence (option -{}-data-type or -t)} The option -t must be followed either by \cmd{SNP} or by \cmd{DNA}. \cmd{SNP} should be used if you have numerical data (from 0 to 9). \cmd{DNA} must be used if you have DNA data (A, T, G, C). Warning: the DNA option currently does not work if you have reconstructed the phylogeny with phylip. \subsection{Data type: trait (option -{}-data-qual or -q)} The software can deal with qualitative data (case/control) or quantitative data. The -q (or ­{}-data-qual) option must be followed by either qualitative or quantitative, depending on your data. \subsection{Print tree (option -{}-print-tree)} If this option is specified, the tree with the character state changes along the branches will be written in the output file. It may especially be useful when you are performing the localisation analysis, because in this case, the tree is not written in the output file by default. \textit{Warning: if several trees are analysed, with the -{}-print-tree option, they will \emph{all} be printed in the output file.} \section{Association test (option -{}-association or -a)} When the -a option is used, the program will perform the phylogeny-based association test. \subsection{Options specific to the association test} %\subsubsection{Root method (-{}-root-method)} %To perform the association test, the tree must be rooted. Depending on your data, you may want to root either on an ancetral sequence (-{}-root-method ancestor) or on an outgroup (-{}-root-method outgroup). %\begin{center} %%\begin{boxedminipage}[width=0.5\linewidth] %\includegraphics[width=0.45\linewidth]{anc_outg.fig} %%\end{boxedminipage} %\end{center} %\subsubsection{Name of the root (-{}-root)} %This option must be followed by the name of the sequence you choose to root the tree (either the outgroup or the ancestor). \subsubsection{Removing the outgroup (option -{}-remove-outgroup)} The outgroup may either be a sequence of the sample for which the number of cases and controls carrying it is defined or a sequence for which we don't have any cases or controls (for example, an ape sequence). In this last case, the outgroup must be removed from the sample before the analysis. It is possible by specifying the option -{}-remove outgroup. \subsubsection{Name of the outgroup (option -{}-outgroup)} This option will be useful in two cases: \begin{itemize} \item If you work on an unrooted tree (with \paml or \paup): for the association test, the tree \emph{must be rooted} because the analysis starts from the root. You must then specify the name of the sequence you choose as outgroup after the option -{}-outgroup and \newchitree will perform the rooting. \item If you want to remove an outgroup from the analysis: if you work with \phylip, you will have to specify the name of the outgroup which should be removed after the option -{}-outgroup. This is not necessary with \paup because the outgroup is identified by a star in the paup output file, so \newchitree can find it. \end{itemize} \subsubsection{Number of permutations (option -{}-permutations or -r)} The program can compute a type I error corrected for multiple testing associated with the test by using a permutation procedure such as the one described in~\citet{Ge03} and in~\citet{Becker04}. In this case, the user must define the number of permutations to perform to evaluate the type I error by using the -{}-permutation (or -r) option. This number should be high, but the higher it is, the longer the computation time will be. Depending on the studied data sets, we suggest this number to be chosen between 10000 and 100000. \subsubsection{Threshold for chi-square significance (option chi2-threshold or -n)} If you do not want to compute the exact type I error by permutation, a significance threshold for the \chisquares can be chosen by the user using the -{}-chi2-threshold (or -n) option. In this case, you must put the -{}-permutation option to zero. \subsubsection{Branch prolongation (option -{}-no-prolongation)} If the -{}-no-prolongation option is specified in the command line, the different branches of the tree will not be prolonged. (see figure~\ref{fig:option_b}). \begin{figure}[htb] \begin{tabular}{|l|c|c|} \cline{2-3} \multicolumn{1}{c|}{}& \includegraphics[width=0.4\linewidth, subfig=1]{option_b.fig} & \includegraphics[width=0.4\linewidth, subfig=2]{option_b.fig} \\ \cline{2-3} \multicolumn{1}{c|}{}& With the -{}-no-prolongation option & Without the -{}-no-prolongation option \\ \cline{2-3} \multicolumn{1}{c|}{}&\multicolumn{2}{|c|}{The \chisquares are calculated between\footnote{The nosplit pattern of \chisquare is used}:} \\ \hline Level 1:& 1 - 2 and 3 & 1 2 and 3 \\ Level 2:& 2.1 - 2.2 - 3.1 - 3.2 & 1 - 2.1 - 2.2 - 3.1 and 3.2 \\ Level 3:& 3.2.1 and 3.2.2 & 1 - 2.1 - 2.2 - 3.1 - 3.2.1 and 3.2.2\\ \hline \end{tabular} \caption{Effect of the -b option} \label{fig:option_b} \end{figure} \textit{Warning: This option is currently under development. At present, the program has only been tested \emph{without} the \fn{-{}-no-prolongation} option specified. If you choose not to, you may encounter some problems.} \subsubsection{Ancestral sequence (option -{}-anc-seq)} This option is only necessary when the tree is rooted using an ancestral sequencce with \phylip. In this case, the ancestral sequence not being in the output file of \phylip, \newchitree cannot read it directly. So, you have to enter it manually after the -{}-anc-seq option. \subsubsection{Choice of the tree that will be analysed (option -{}-tree-to-analyse)} This option enables the user to specify the number of the tree that will be analysed among all the equiparsimonious trees present in the input file (the -{}-tree-to-analyse must be followed by the number of the chosen tree in the input file). If this option is not specified, the tree will be randomly drawn among all the equiparsimonious trees. \subsection{Description of the output file} Examples of output files are displayed in the test directory. They are labelled *.asso. The output file shows the tree, with the number of cases an controls at each nodes. At the root of the tree, there is a list of the different tests performed on the tree: the level of the test is indicated within square brackets, followed by the number of degrees of freedom (df=), the value of the \chisquare test and the corresponding p-value. In a second part of the file, a list of the p-values estimated by permutations (but non corrected for multiple testing) for each level of the tree is provided. Then, the last line gives the corrected p-value for the test. \section{Localisation test (option -{}-s-localisation or -l)} \subsection{Options specific to the localisation} \subsubsection{Number of trees (option -{}-number-of-trees-to-analyse)} With this option, you choose the number of trees to use in the localisation test. These trees are randomly sampled without replacement among all the equiparsimonious trees in the first input file. \subsubsection{-{}-s-site-number } With this option, you specify the position of the character $S$ in the haplotypes. The first site is numbered 1. \subsubsection{ -{}-s-site-characters ancestral state -> derived state} With this option, you specify which state is the ancestral state and which state is the derived state for the character $S$. The two states must be separated by the symbol ``->''. For example, if the character $S$ has two states 1 and 2, 1 being the ancestral state, you will use the option as follows: \\ \newchitree [other options ] -{}-s-site-characters ``1->2''\\ Be careful: this option is \emph{case sensitive} and the \emph{quotes are mandatory}. \subsubsection{ -{}-co-evo|e simple|double} This option enables the user to choose how the $V_{i}$ are calculated. \paragraph{option ''simple''} This option corresponds to the calculation of $V_{i}$ described in \citet{Bardel05}. Please refer to this publication for more information. \paragraph{option ''double''} This option corresponds to a new method to calculate $V_{i}$. This method seems to be more appropriate because it takes into account the two senses of character state changes. \\ Here is a short description of this new calculation method (one studied tree): \begin{itemize} \item Let $E^{0 \rightarrow 1}_{i}$ be the number of expected co-mutations of $S$ (2 character states: T [control] and M [case]) and $i$ (2 character states 0 and 1) $$E^{0 \rightarrow 1}_{i}=\frac{(m^{0 \rightarrow 1}_{i}\times s^{T \rightarrow M})+(m^{1 \rightarrow 0}_{i}\times s^{M \rightarrow T})}{b}$$ \\ where: \begin{description} \item[$m^{0 \rightarrow 1}_{i}$ (resp. $m^{1 \rightarrow 0}_{i}$)~:] nb transitions $0 \rightarrow 1$ (resp. $1 \rightarrow 0$) of $i$ \item[$s^{T \rightarrow M}$ (resp.$ s^{M \rightarrow T}$)~:] nb transitions $T \rightarrow M$ (resp. $M \rightarrow T$) of $S$ \item[$b$~:] nb branches of tree $t$ \end{description} \item Let $R^{0 \rightarrow 1}_{i}$ be the number of observed co-mutations of $S$ and $i$ on tree $t$ \item $V^{0 \rightarrow 1}_{i}$ is calculated as defined in \cite{Bardel05}: \end{itemize} $$\boxed{ \left\{\begin{array}{ll} V^{0 \rightarrow 1}_{i}=0 & if\ E^{0 \rightarrow 1}_{i}=0 \\ V^{0 \rightarrow 1}_{i}=\frac{\displaystyle{R^{0 \rightarrow 1}_{i}-E^{0 \rightarrow 1}_{i}}}% {\displaystyle{\sqrt{E^{0 \rightarrow 1}_{i}}}} & if \ E^{0 \rightarrow 1}_{i} \ne 0 \end{array} \right. }$$ If more than one tree is studied, the $V^{0 \rightarrow 1}_{i}$ must be summed for all the trees. \subsection{Description of the output file} The output file contains only a list of the different $V_i$ (in ascending order) for the different sites and the different character state transitions. The sites with the highest $V_i$ are putative susceptibility sites. \chapter{Example files} The \fn{test} directory contains example files for the three phylogeny reconstruction programs. The files are grouped in four directories: \begin{itemize} \item \fn{create\_file} which contains files and instructions necessary to obtain \paup or \paml/\phylip file formats from output files of the haplotype reconstruction program. \item \fn{\paup}, \fn{\phylip} and \fn{\paml} which contain files and instructions necessary to perfom association and localisation tests \end{itemize} In each directory, all the input and output files for all the programs and a bash script containing the different command lines are provided. % TODO Ajouter le changement des chemins!! \section{Obtention of input files for phylogeny reconstruction programs} The \fn{create\_file} directory is divided into 2 sub-directories: \fn{paup\_file} and \fn{phy-paml\_file}. In these directories, we present how to obtain input files for \paup and \phylip (or \paml) from output files of the haplotype reconstruction programs \phase and \famhap. \subsection{Creating \paup input files from \phase output file} The \fn{paup\_file} directory contains case/control data (12 SNPs genotyped for 100 case and 100 control individuals). The haplotypes are reconstructed using \phase and the \paup input file is generated using \rechaplo. The different files available in this directory are the following: \begin{description} \item [caco.phase~:] an input file for \phase containing the disease status for each individual \item [caco.phase.out~:] the main \phase output file. It is used as the input file for \rechaplo \item [caco.phase.out\_*~:] other \phase output files. They are not useful to run \altree \item [caco.prepaup~:] the main \rechaplo output file. It must be completed to become a valid \paup input file \item [nb\_cas\_control.txt~:] the \rechaplo output file containing the number of cases and controls carrying each haplotype \item [create\_file~:] a bash script containing the two command lines to run respectively \phase and \rechaplo \end{description} \begin{figure}[htb] \includegraphics[width=\linewidth]{create_file_paup.fig}\centering \caption{Summary of the files and programs used to obtain input files for \paup} \label{fig:create_paup} \end{figure} \subsection{Creating \phylip/\paml input files from \famhap output files} The \fn{phy-paml\_file} directory contains family data (10 SNPs genotyped for 100 trios: 2 parents + 1 affected child). The haplotypes are reconstructed using \famhap and the \phylip/\paml input file is generated using \rechaplo. The different files available in this directory are the following: \begin{description} \item [fam19\_0~:] an input file for \famhap (linkage format without headers) \item [trio.fmh and fam19\_0\_H1\_HAPLOTYPES~:] the two \famhap output files used by \rechaplo \item [fam19\_0\_*~:] all other \famhap output files. They are not useful to run \altree \item [trio.phy~:] the main \rechaplo output file. It is an input file for \phylip \item [nb\_cas\_control.txt~:] the \rechaplo output file containing the number of cases and controls carrying each haplotype \item [create\_file~:] a bash script containing the two command lines to run respectively \famhap and \rechaplo \end{description} % These example files correspond to two %situations: %\begin{itemize} %\item case/control data (100 case and 100 control individuals): they are analysed using \paup %\item family data (100 trios: 2 parents + 1 affected child): they are analysed using \phylip or \paml %\end{itemize} \begin{figure}[htb] \includegraphics[width=0.9\linewidth]{create_file_phy.fig}\centering \caption{Summary of the files and programs used to obtain input files for \phylip or \paml} \label{fig:create_phy} \end{figure} \section{Analysing \paup files} In the \fn{``test/paup/''} directory, six sub-directories can be found, each corresponding to a different way to root (or not) the tree using \paup: \begin{itemize} \item \fn{ancestor\_absent}: In this directory, the tree is rooted using an ancestral sequence which is not in the data set (it can be a consensus sequence for example) \item \fn{ancestor\_present}: In this directory, the tree is rooted using an ancestral sequence which is in the data set (it can be the most frequent haplotype in the sample for example) \item \fn{outgr\_absent}: In this directory, the tree is rooted using an outgroup which is not carried by case or control individuals (it can be an ape sequence for example) \item \fn{outgr\_present}: In this directory, the tree is rooted using an outgroup which is in the data set \item \fn{unrooted\_absent}: In this directory, the tree is not rooted with \paup. For the analysis, \newchitree roots the tree using an outgroup (we choose the sequence H000), but \emph{do not} take the outgroup into account for the association test \item \fn{unrooted\_present}: In this directory, the tree is not rooted with \paup. For the analysis, \newchitree roots the tree using an outgroup (we choose the sequence H000), and this haplotype \emph{is} taken into account for the association test \end{itemize} All these directories are split in two sub-directories containing the files used to perform the association test (directory \fn{association}) or the localisation test (directory \fn{localisation}) \emph{Warning: For the localisation test, as the rooting is not necessary, the question of the presence or not of an outgroup is irrelevant put the -{}-permutation to zero(directories unrooted\_absent and unrooted\_present). The two localisation sub-directories thus only correspond to two different data sets analysed with \altree.} \subsection{Association test} All the association directories contain the same files: \begin{description} \item [caco.paup~:] the valid \paup file \item [nb\_cas\_control.txt~:] the file containing the number of time each haplotype is carried by case and control individuals \item [test.res.log~:] the \paup output file which is used as an \newchitree input file \item [test.tree:~] the other \paup output file, which is not useful for \newchitree \item [1\_caco.asso:~] the \newchitree output file. The number of permutation being limited to 1, the corrected p-value doesn't mean anything! \item [run\_altree:~] a bash script containing the two command lines to run respectively \paup and \newchitree (association test) \end{description} \begin{figure}[htb] \includegraphics[width=0.95\linewidth]{association_paup.fig}\centering \caption{Summary of the different files and programs used for the association test (using \paup)} \label{fig:paup_asso} \end{figure} \subsection{Localisation test} All the localisation directories contain the same files: \begin{description} \item [caco.paup:~] the valid \paup file \item [nb\_cas\_control.txt~:] the file containing the number of time each haplotype is carried by case and control individuals \item [et\_caco.paup:~] the output file of \etHT. It is a valid \paup input file in which the character $S$ has been added \item [test.res.log~:] the \paup output file which is used as an \newchitree input file \item [test.tree:~] the other \paup output file, which is not useful for \newchitree \item [caco.loc:~] the \newchitree output file, result of the localisation test \item [run-prog:~] a bash script containing the three command lines to run respectively \etHT, \paup and then \newchitree (localisation test) \end{description} \begin{figure}[htb] \includegraphics[width=\linewidth]{localisation_paup.fig}\centering \caption{Summary of the different files and programs used for the localisation test (using \paup)} \label{fig:paup_loc} \end{figure} \section{Analysing \phylip files} In the \fn{\phylip} directory, four sub-directories can be found, corresponding to various rooting methods. These directories are similar to the ones described for \paup. They contains only one sub-directory named \fn{association}. For the moment, \altree cannot deal with \phylip files as input files for the localisation test because when there are ambiguities in the apomorphie reconstructions, \phylip keeps them in the output file and the state ``?'' is assigned to the ambiguous character. At present, \altree cannot deal with these ambiguities. \subsection{Association test} All the association directories contain almost the same files: \begin{description} \item [trio.phy:~] the \phylip input file \item [nb\_cas\_controls.txt:~] it contains the number of time each haplotype is carried by case and control individuals \item [outfile:~] the \phylip output file which is used as an \newchitree input file \item [outtre:~] the other \phylip output file, which is not useful for \newchitree \item [1\_trio\_phy.asso:~] the \newchitree output file, result of the localisation test \item [run-altree:~] a bash script containing the two command lines to run respectively \phylip and \newchitree (association test) \item [ancestors:~] it contains the ancestral sequence. This file is needed only if the tree is rooted using an ancestral sequence (\fn{ancestor\_absent} and \fn{ancestor\_present} directories) \end{description} \begin{figure}[htb] \centering \includegraphics[width=0.9\linewidth]{association_phylip.fig} \caption{Summary of the different files and programs used for the association test (using \phylip)} \label{fig:phylip_asso} \end{figure} \section{Analysing \paml files} In the directory \fn{\paml}, three sub-directories can be found: \begin{description} \item [tree\_building\_using\_phyML:~] as stated by its author, \paml is not a very good tool for tree reconstruction. In this example, we choose to reconstruct the phylogenetic tree using the software \phyml~\citep{Guindon03}. The phylogenetic reconstruction step has been performed in this directory \item[\fn{unrooted\_absent} and \fn{unrooted\_present}:~] which are similar to ones described for \paup. \end{description} \subsection{Phylogenetic tree reconstruction using \phyml} The files necessary for the phylogenetic reconstruction can be found in the directory \fn{tree\_building\_using\_phyML}. The input file for \phyml is the phylip format file named \fn{trio2.phy}. The options used to run \phyml are specified in the file \fn{run\_phyml}. The other files in the directory are \phyml output files. In the following, we will only use the file \fn{trio2.phy\_phyml\_tree.txt} which contains the reconstructed phylogenetic tree. \subsection{Association test} The two \fn{association} directories contain the same files: \begin{description} \item [trio2.phy:~] the \phylip format file containing the sequences. It is used as an input file for \paml \item [nb\_cas\_controls.txt:~] it contains the number of time each haplotype is carried by case and control individuals \item [trio2.phy\_phyml\_tree.txt:~] the output file of \phyml. It is also used as an input file for \paml \item [baseml.ctl:~] the parameter file used by \paml \item [rst:~] the \paml output file which will be used by \newchitree. It contains the apomorphy list and the tree structure \item[2base.t, lnf, mlb, rst1 and rub:~] all the other \paml output files. They are not useful for \newchitree \item [1\_trio\_ML.asso:~] the \newchitree output file, result of the association test \item [run\_altree:~] a bash script containing the two command lines to run respectively \paml and \newchitree (association test) \end{description} \begin{figure}[htb] \includegraphics[width=0.9\linewidth]{association_paml.fig}\centering \caption{Summary of the different files and programs used for the association test (using \paml)} \label{fig:paml_asso} \end{figure} \subsection{Localisation test} With \paml, only unrooted trees are obtained. These unrooted trees can be directly analysed with \newchitree, so the question of the presence or absence of an outgroup is irrelevant. Only one localisation directory exists, it is located in the directory \fn{unrooted\_present}. The \fn{localisation} directory contains the following files: \begin{description} \item[trio2.phy:~] the \phylip format file without the character $S$ \item [et\_trio2.phy:~] the \phylip format file including the character $S$. It is one of the input file for \paml \item [nb\_cas\_controls.txt:~] contains the number of time each haplotype is carried by case and control individuals \item [trio2.phy\_phyml\_tree.txt:~] the output file of \phyml (tree reconstructed without taking the character $S$ into account). It is also an input file for \paml \item [baseml.ctl:~] the parameter file used by \paml \item [rst:~] the \paml output file which will be used by \newchitree. It contains the apomorphy list and the tree structure \item[2base.t, lnf, mlb, rst1 and rub:~] all the other \paml output files. They are not useful for \newchitree \item [trio2.loc:~] the \newchitree output file, result of the localisation test \item [run-prog:~] a bash script containing the three command lines to run respectively \etHT, \paml and \newchitree (localisation test) \end{description} \begin{figure}[htb] \includegraphics[width=\linewidth]{localisation_paml.fig}\centering \caption{Summary of the different files and programs used for the localisation test (using \paml)} \label{fig:paml_loc} \end{figure} \chapter{URLs where programs can be downloaded} \section{Haplotype reconstruction programs} \famhap \url{http://www.uni-bonn.de/%7Eumt70e/becker.html} \phase \url{http://www.stat.washington.edu/stephens/software.html} \section{Phylogeny reconstruction programs} \paup \url{http://paup.csit.fsu.edu/} \phylip \url{http://evolution.genetics.washington.edu/phylip.html} \paml \url{http://abacus.gene.ucl.ac.uk/software/paml.html} \phyml \url{http://atgc.lirmm.fr/phyml/} \bibliographystyle{plainnat} \bibliography{stage} \end{document} \annexe \chapter{GNU GENERAL PUBLIC LICENSE} \label{GPL} \begin{center} {\Large GNU GENERAL PUBLIC LICENSE} \\ Version 2, June 1991 \end{center} Copyright (C) 1989, 1991 Free Software Foundation, Inc. \\ 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA \\ Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. \section{Preamble} The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Library General Public License instead.) You can apply it to your programs, too. When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things. To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it. For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights. We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software. Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations. Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all. The precise terms and conditions for copying, distribution and modification follow. \section{GNU GENERAL PUBLIC LICENSE} \subsection{TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION} 0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you". Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does. 1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program. You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee. 2. 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If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License. 9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation. 10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally. \section{NO WARRANTY} 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 12. 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It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. Copyright (C) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program. You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker. , 1 April 1989 Ty Coon, President of Vice This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. \end{document} % LocalWords: outgroup paup ALTree-v1.3.2/Documentation/stage.bib000066400000000000000000000716241412112337500174220ustar00rootroot00000000000000%Pour month: mettre les trois premièeres lettres du nom du mois en anglais, sans accolades ex: month=APR, % % Mettre and others au lieu de et al. % @Article{Abecasis00, author = {G R Abecasis and W O Cookson}, title = {G{O}{L}{D}--graphical overview of linkage disequilibrium}, journal = {Bioinformatics}, year = {2000}, OPTkey = {}, volume = {16}, number = {2}, pages = {182-183}, month = {Mar}, OPTnote = {}, OPTannote = {} } @Article{Almasy01, author = {L Almasy and J D Terwilliger and D Nielsen and T D Dyer and D Zaykin and J Blangero}, title = {{G}{A}{W}12: {S}imulated genome scan , sequence, and family data for a common disease}, journal = {Genet epidemiol}, year = {2001}, OPTkey = {}, volume = {21 (Suppl 1)}, OPTnumber = {}, 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{Phylogenetic Analysis by Maximum Likelihood}, note = {http://abacus.gene.ucl.ac.uk/software/paml.html}, OPTkey = {}, OPTmonth = {}, OPTyear = {}, OPTannote = {} } @Article{Zaykin02, author = {D V Zaykin and P H Westfall and S S Young and M A Karnoub and M J Wagner and M G Ehm}, title = {Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals}, journal = {Hum Hered}, year = {2002}, OPTkey = {}, volume = {53}, OPTnumber = {}, pages = {79--91}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } % 0370475 (JID) @Article{Zhang02, Author="K Zhang and P Calabrese and M Nordborg and F Sun", Title="{Haplotype block structure and its applications to association studies: power and study designs}", Journal="Am J Hum Genet", Year="2002", Volume="71", Number="6", Pages="1386-1394", Month="Dec" } @Article{Zhao00, author = {J H Zhao and D Curtis and P C Sham}, title = {Model-free analysis and permutation tests for allelic associations}, journal = {Hum Hered}, year = {2000}, OPTkey = {}, volume = {50}, OPTnumber = {}, pages = {133--139}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Zhao03, author = {H Zhao and R Pfeiffer and M H Gail}, title = {Haplotype analysis in population genetics and association studies}, journal = {Pharmacogenomics}, year = {2003}, OPTkey = {}, volume = {4}, number = {2}, pages = {171--178}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } @Article{Zhu01, author = {X Zhu and R S Cooper and G Chen and A Luke and R Eltson}, title = {Localization of the {Q}1 mutation by cladistic analysis}, journal = {Genet Epidemiol}, year = {2001}, OPTkey = {}, volume = {21 (Suppl.1)}, OPTnumber = {}, pages = {S594--S599}, OPTmonth = {}, OPTnote = {}, OPTannote = {} } ALTree-v1.3.2/MANIFEST000066400000000000000000000236051412112337500141550ustar00rootroot00000000000000.gitignore ALTree/Base.pm ALTree/Chi2.pm ALTree/Foret.pm ALTree/Import.pm ALTree/Input.pm ALTree/Nanova.pm ALTree/Node.pm ALTree/Sens.pm ALTree/Site.pm ALTree/SiteCollection.pm ALTree/SitePerForet.pm ALTree/SitePerTree.pm ALTree/SiteSens.pm ALTree/SiteSensPerForet.pm ALTree/SiteSensPerTree.pm ALTree/to_rewrite.pm ALTree/Tree.pm ALTree/Utils.pm bash_completion Changes CUtils/c_sources/chisq.c CUtils/c_sources/chisq.h CUtils/c_sources/datatype.h CUtils/c_sources/debug.h CUtils/c_sources/double_permutation.c CUtils/c_sources/double_permutation.h CUtils/c_sources/fisher.c CUtils/c_sources/fisher.h CUtils/c_sources/Makefile.PL CUtils/c_sources/mt19937ar.c CUtils/c_sources/mt19937ar.h CUtils/c_sources/MYMETA.json CUtils/c_sources/myrand.c CUtils/c_sources/myrand.h CUtils/c_sources/resampling.c CUtils/c_sources/resampling.h CUtils/c_sources/rhyper.c CUtils/c_sources/rhyper.h CUtils/c_sources/stats.c CUtils/c_sources/stats.h CUtils/c_sources/z.c CUtils/c_sources/z.h CUtils/const-c.inc CUtils/const-xs.inc CUtils/CUtils.xs CUtils/fallback/const-c.inc CUtils/fallback/const-xs.inc CUtils/lib/ALTree/CUtils.pm CUtils/Makefile.PL CUtils/MYMETA.json CUtils/ppport.h CUtils/t/ALTree-CUtils.t CUtils/t/double_permutation.t Documentation/fig/altree-q.fig Documentation/fig/anc_outg.fig Documentation/fig/association_paml.fig Documentation/fig/association_paup.fig Documentation/fig/association_phylip.fig Documentation/fig/create_file_paup.fig Documentation/fig/create_file_phy.fig Documentation/fig/localisation_paml.fig Documentation/fig/localisation_paup.fig Documentation/fig/option_b.fig Documentation/fig/option_b.subfig Documentation/fig/overview.fig Documentation/Makefile Documentation/manual.tex Documentation/stage.bib Makefile.PL MANIFEST This list of files MYMETA.json progs/altree progs/altree-add-S progs/altree-convert README t/ALTree.t test/create_file/paup_file/caco.phase test/create_file/paup_file/caco.phase.out test/create_file/paup_file/caco.phase.out_freqs test/create_file/paup_file/caco.phase.out_monitor test/create_file/paup_file/caco.phase.out_pairs test/create_file/paup_file/caco.phase.out_recom test/create_file/paup_file/caco.prepaup test/create_file/paup_file/create_file test/create_file/paup_file/nb_cas_control.txt test/create_file/phy-paml_file/create_file test/create_file/phy-paml_file/fam19_0 test/create_file/phy-paml_file/fam19_0.gm test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt test/create_file/phy-paml_file/nb_cas_control.txt test/create_file/phy-paml_file/NUM test/create_file/phy-paml_file/trio.fmh test/create_file/phy-paml_file/trio.phy test/create_file/phy-paml_file/trio.prephy test/paml/tree_building_using_phyML/run_phyML test/paml/tree_building_using_phyML/trio2.phy test/paml/tree_building_using_phyML/trio2.phy_phyml_lk.txt test/paml/tree_building_using_phyML/trio2.phy_phyml_stat.txt test/paml/tree_building_using_phyML/trio2.phy_phyml_tree.txt test/paml/unrooted_absent/association/1_trio_ML.asso test/paml/unrooted_absent/association/2base.t test/paml/unrooted_absent/association/baseml.ctl test/paml/unrooted_absent/association/lnf test/paml/unrooted_absent/association/mlb test/paml/unrooted_absent/association/nb_cas_control.txt test/paml/unrooted_absent/association/rst test/paml/unrooted_absent/association/rst1 test/paml/unrooted_absent/association/rub test/paml/unrooted_absent/association/run_altree test/paml/unrooted_absent/association/trio2.phy test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt test/paml/unrooted_present/association/1_trio_ML.asso test/paml/unrooted_present/association/2base.t test/paml/unrooted_present/association/baseml.ctl test/paml/unrooted_present/association/lnf test/paml/unrooted_present/association/mlb test/paml/unrooted_present/association/nb_cas_control.txt test/paml/unrooted_present/association/rst test/paml/unrooted_present/association/rst1 test/paml/unrooted_present/association/rub test/paml/unrooted_present/association/run_altree test/paml/unrooted_present/association/trio2.phy test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt test/paml/unrooted_present/localisation/2base.t test/paml/unrooted_present/localisation/baseml.ctl test/paml/unrooted_present/localisation/et_trio2.phy test/paml/unrooted_present/localisation/lnf test/paml/unrooted_present/localisation/mlb test/paml/unrooted_present/localisation/nb_cas_controls.txt test/paml/unrooted_present/localisation/rst test/paml/unrooted_present/localisation/rst1 test/paml/unrooted_present/localisation/rub test/paml/unrooted_present/localisation/run-prog test/paml/unrooted_present/localisation/trio2.loc test/paml/unrooted_present/localisation/trio2.phy test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt test/paup/ancestor_absent/association/1_caco.asso test/paup/ancestor_absent/association/caco.paup test/paup/ancestor_absent/association/nb_cas_control.txt test/paup/ancestor_absent/association/run_altree test/paup/ancestor_absent/association/test.res.log test/paup/ancestor_absent/association/test.tree test/paup/ancestor_absent/localisation/caco.loc test/paup/ancestor_absent/localisation/caco.paup test/paup/ancestor_absent/localisation/et_caco.paup test/paup/ancestor_absent/localisation/nb_cas_control.txt test/paup/ancestor_absent/localisation/run-prog test/paup/ancestor_absent/localisation/test.res.log test/paup/ancestor_absent/localisation/test.tree test/paup/ancestor_present/association/1_caco.asso test/paup/ancestor_present/association/caco.paup test/paup/ancestor_present/association/nb_cas_control.txt test/paup/ancestor_present/association/run_altree test/paup/ancestor_present/association/test.res.log test/paup/ancestor_present/association/test.tree test/paup/ancestor_present/localisation/caco.loc test/paup/ancestor_present/localisation/caco.paup test/paup/ancestor_present/localisation/et_caco.paup test/paup/ancestor_present/localisation/nb_cas_control.txt test/paup/ancestor_present/localisation/run-prog test/paup/ancestor_present/localisation/test.res.log test/paup/ancestor_present/localisation/test.tree test/paup/outgr_absent/association/1_caco.asso test/paup/outgr_absent/association/caco.paup test/paup/outgr_absent/association/nb_cas_control.txt test/paup/outgr_absent/association/run_altree test/paup/outgr_absent/association/test.res.log test/paup/outgr_absent/association/test.tree test/paup/outgr_absent/localisation/caco.loc test/paup/outgr_absent/localisation/caco.paup test/paup/outgr_absent/localisation/et_caco.paup test/paup/outgr_absent/localisation/nb_cas_control.txt test/paup/outgr_absent/localisation/run-prog test/paup/outgr_absent/localisation/test.res.log test/paup/outgr_absent/localisation/test.tree test/paup/outgr_present/association/1_caco.asso test/paup/outgr_present/association/caco.paup test/paup/outgr_present/association/nb_cas_control.txt test/paup/outgr_present/association/run_altree test/paup/outgr_present/association/test.res.log test/paup/outgr_present/association/test.tree test/paup/outgr_present/localisation/caco.loc test/paup/outgr_present/localisation/caco.paup test/paup/outgr_present/localisation/et_caco.paup test/paup/outgr_present/localisation/nb_cas_control.txt test/paup/outgr_present/localisation/run-prog test/paup/outgr_present/localisation/test.res.log test/paup/outgr_present/localisation/test.tree test/paup/unrooted_absent/association/1_caco.asso test/paup/unrooted_absent/association/caco.paup test/paup/unrooted_absent/association/nb_cas_control.txt test/paup/unrooted_absent/association/run_altree test/paup/unrooted_absent/association/test.res.log test/paup/unrooted_absent/association/test.tree test/paup/unrooted_absent/localisation/caco.loc test/paup/unrooted_absent/localisation/caco.paup test/paup/unrooted_absent/localisation/et_caco.paup test/paup/unrooted_absent/localisation/nb_cas_control.txt test/paup/unrooted_absent/localisation/run-prog test/paup/unrooted_absent/localisation/test.res.log test/paup/unrooted_absent/localisation/test.tree test/paup/unrooted_present/association/1_caco.asso test/paup/unrooted_present/association/caco.paup test/paup/unrooted_present/association/nb_cas_control.txt test/paup/unrooted_present/association/run_altree test/paup/unrooted_present/association/test.res.log test/paup/unrooted_present/association/test.tree test/paup/unrooted_present/localisation/caco.loc test/paup/unrooted_present/localisation/caco.paup test/paup/unrooted_present/localisation/et_caco.paup test/paup/unrooted_present/localisation/nb_cas_control.txt test/paup/unrooted_present/localisation/run-prog test/paup/unrooted_present/localisation/test.res.log test/paup/unrooted_present/localisation/test.tree test/phylip/ancestor_absent/association/1_trio_phy.asso test/phylip/ancestor_absent/association/ancestors test/phylip/ancestor_absent/association/nb_cas_controls.txt test/phylip/ancestor_absent/association/outfile test/phylip/ancestor_absent/association/outtree test/phylip/ancestor_absent/association/run_altree test/phylip/ancestor_absent/association/trio.phy test/phylip/ancestor_present/association/1_trio_phy.asso test/phylip/ancestor_present/association/ancestors test/phylip/ancestor_present/association/nb_cas_controls.txt test/phylip/ancestor_present/association/outfile test/phylip/ancestor_present/association/outtree test/phylip/ancestor_present/association/run_altree test/phylip/ancestor_present/association/trio.phy test/phylip/outgroup_absent/association/1_trio_phy.asso test/phylip/outgroup_absent/association/nb_cas_controls.txt test/phylip/outgroup_absent/association/outfile test/phylip/outgroup_absent/association/outtree test/phylip/outgroup_absent/association/run_altree test/phylip/outgroup_absent/association/trio.phy test/phylip/outgroup_present/association/1_trio_phy.asso test/phylip/outgroup_present/association/nb_cas_controls.txt test/phylip/outgroup_present/association/outfile test/phylip/outgroup_present/association/outtree test/phylip/outgroup_present/association/run_altree test/phylip/outgroup_present/association/trio.phy ALTree-v1.3.2/MANIFEST.SKIP000066400000000000000000000010621412112337500147130ustar00rootroot00000000000000# Version control files and dirs. \bRCS\b \bCVS\b ,v$ .cvsignore$ ^\.svn\b ^\.git\b /\.svn\b # Makemaker generated files and dirs. ^MANIFEST\. ^Makefile$ ^CUtils.*/Makefile$ blib/ ^MakeMaker-\d ^MYMETA.yml$ /MYMETA.yml$ # Temp, old and emacs backup files. ~$ \.old$ ^#.*#$ ^\.# .*\.swp$ # Distributions ^altree-.*\.tar\.gz$ # Documentation ^Documentation/fig/.*\.pdftex(_t)?$ ^Documentation/fig/.*\.pstex(_t)?$ ^Documentation/fig/.*\.subfig\.mk$ ^Documentation/fig/.*_[0-9]+\.fig$ # Other .*\.o$ ^make-release$ ^Documentation/example_files ^altree_enleve$ ALTree-v1.3.2/Makefile.PL000066400000000000000000000014111412112337500147650ustar00rootroot00000000000000use 5.008004; use ExtUtils::MakeMaker; # See lib/ExtUtils/MakeMaker.pm for details of how to influence # the contents of the Makefile that is written. WriteMakefile( NAME => 'altree', PMLIBDIRS => [ 'ALTree' ], DIR => [ 'CUtils' ], VERSION_FROM => 'progs/altree', depend => { Makefile => '$(VERSION_FROM)' }, LICENSE => 'perl', PREREQ_PM => {}, # e.g., Module::Name => 1.1 ($] >= 5.005 ? ## Add these new keywords supported since 5.005 (ABSTRACT_FROM => 'progs/altree', # retrieve abstract from module AUTHOR => 'Claire Bardel ') : ()), EXE_FILES => [qw (progs/altree progs/altree-add-S progs/altree-convert)], ); ALTree-v1.3.2/README000066400000000000000000000026411412112337500137010ustar00rootroot00000000000000ALTree version 0.92 =================== The README is used to introduce the module and provide instructions on how to install the module, any machine dependencies it may have (for example C compilers and installed libraries) and any other information that should be provided before the module is installed. A README file is required for CPAN modules since CPAN extracts the README file from a module distribution so that people browsing the archive can use it get an idea of the modules uses. It is usually a good idea to provide version information here so that people can decide whether fixes for the module are worth downloading. INSTALLATION To install this module type the following: perl Makefile.PL make make test make install If you prefer to install it in your home directory, then type the following: perl Makefile.PL PREFIX=~ make make test make install In this case, do not forget to add ~/bin in your PATH and ~/lib/perl/"perl_version"/ in PERL5LIB if they are not already present. DEPENDENCIES This module requires these other modules and libraries: blah blah blah COPYRIGHT AND LICENCE Put the correct copyright and licence information here. Copyright (C) 2005 by Claire Bardel This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.4 or, at your option, any later version of Perl 5 you may have available. ALTree-v1.3.2/bash_completion000066400000000000000000000056371412112337500161220ustar00rootroot00000000000000#shopt -s extglob _altree_option_list() { "${COMP_WORDS[0]}" --help 2> /dev/null | \ sed -e '0,/^Options/d;/^ --/{s/^ //;s/^--\(man\|help\).*/--\1/;p};d' } _altree() { local cur prev cmd opts i lopt # options with argument local OLD_IFS="$IFS" IFS=' ' local options_full=($(_altree_option_list)) IFS="$OLD_IFS" local options_noarg=(${options_full[@]##* *}) #echo "options_noarg=${options_noarg[@]}" options_noarg=(${options_noarg[@]//"|"/" -"}) #echo "options_noarg=${options_noarg[@]}" local options=(${options_full[@]// */}) options=(${options[@]//"|"/" -"}) #echo "options=${options[@]}" IFS="|" local pat_options="${options[*]}" local pat_options_noarg="${options_noarg[*]}" IFS="$OLD_IFS" #echo "pat_options=$pat_options" COMPREPLY=() cur="$2" prev="$3" local loaded_options=() for (( i=1; $i<$COMP_CWORD; i++ )); do if [[ ${COMP_WORDS[i]} == @($pat_options) ]]; then loaded_options[${#loaded_options[@]}]=${COMP_WORDS[i]} if [[ ${COMP_WORDS[i]} != @($pat_options_noarg) ]]; then i=$(( $i + 1 )) fi fi done local options_full_r=(${options_full[@]/ *}) #echo "options_full_r=${options_full_r[@]}" for lopt in "${loaded_options[@]}"; do #echo "lopt=$lopt" options_full_r=(${options_full_r[@]##$lopt*}) options_full_r=(${options_full_r[@]##*"|${lopt/-}"*}) done #echo "options_full_r=${options_full_r[@]}" local options_r=(${options_full_r[@]//"|"/" -"}) if [[ "$prev" == @($pat_options) && ! "$prev" == @($pat_options_noarg) ]]; then cmd="$prev" #echo ok pour $prev fi if [[ "$cur" == -* ]]; then opts="${options_r[@]}" local result local long_opts="${options_r[@]##-[^-]*}" result=$(compgen -W '$long_opts' -- "$cur") # hide small options from users, but complete them if # there is no other possible options if [ "$result" = "" ]; then result=$(compgen -W '$opts' -- "$cur") fi COMPREPLY=(${COMPREPLY[@]:-} $result) return fi if [ -z "$cmd" ]; then local long_opts="${options_r[@]##-[^-]*}" COMPREPLY=(${COMPREPLY[@]:-} $(compgen -W '$long_opts' -- "$cur")) return fi for lopt in "${options_full[@]}" last; do case "$lopt" in "$prev"*\ *) break ;; *"|${prev#-}"*\ *) break ;; esac done if [ "$lopt" = last ]; then echo "BUG, please report (with the value '$prev')" fi lopt=${lopt#* } case "$lopt" in *"|"*) # Multiple choices. Continuing... ;; *) # Stick with default bash completion return ;; esac lopt=${lopt//'"'/} lopt=${lopt//'|'/ } COMPREPLY=(${COMPREPLY[@]:-} $(compgen -W '$lopt' -- "$cur")) return } complete -o bashdefault -o default -F _altree altree 2> /dev/null \ || complete -o default -F _altree altree ALTree-v1.3.2/make-release000077500000000000000000000043601412112337500153020ustar00rootroot00000000000000#!/bin/sh set -e VERSION=$(cat progs/altree | \ sed -e '/our.*VERSION/s/.*qv(\([0-9.]\+\)).*/\1/p;d') if [ "$VERSION" = "" ]; then echo "Unable to read current version. Aborting." exit 1 fi FORCE="" while [ $# != 0 ]; do case "$1" in --force) echo "--force enabled. Disabling sanity check..." FORCE=yes ;; --dry-run|-n) echo "--dry-run enabled. No real release will be done." DRYRUN="echo DRY-RUN: " ;; --) shift break ;; -*) echo "Unknown option $1" echo "Aborting" exit 1 ;; *) break; ;; esac shift done echo "Creating version '$VERSION'" set -x [ -f Makefile ] || perl Makefile.PL make Makefile || true make realclean make -C Documentation distclean set +x if [ "$(git status --short --untracked)" != "" ]; then echo "************************************" echo "* Not all files are commited/cleaned" echo "* Please correct before creating a release" echo "* (use 'git status --short --untracked' to look for problematic files)" echo "* (use 'git stash -a' to remove them temporarely)" echo "************************************" if [ "$FORCE" ]; then echo "* !!! WARNING: --force enabled : type 'ENTER to continue'" echo "************************************" read a else exit 1 fi fi perl Makefile.PL if [ "$(make distcheck 2>&1 1>/dev/null | grep -v "^No such file: META.yml$")" != "" ]; then echo "************************************" echo "* Not all files are in MANIFEST (or removed from it)" echo "* Please correct before creating a release" echo "* (use 'make distcheck' to look for problematic files" echo "************************************" if [ "$FORCE" ]; then echo "* !!! WARNING: --force enabled : type 'ENTER to continue'" echo "************************************" read a else exit 1 fi fi make disttest make dist echo "************************************" echo "* SUCCESS !" echo "************************************" echo "* Release created in altree-$VERSION.tar.gz" echo "* Do not forget to create a git tag and push it" echo "* You need to copy this file to the web site" echo "* and tell Vince to update the debian package" echo "************************************" ALTree-v1.3.2/progs/000077500000000000000000000000001412112337500141505ustar00rootroot00000000000000ALTree-v1.3.2/progs/altree000077500000000000000000001550601412112337500153610ustar00rootroot00000000000000#! /usr/bin/perl use strict; use diagnostics; use warnings; use Getopt::Long qw(:config permute); use Pod::Usage; use Data::Dumper; srand(654321); use version; our $VERSION = qv(1.3.2); # Positionner la variable PERL5LIB si besoin # PERL5LIB est une variable comme PATH, sauf qu'elle ne sert pas à # trouver les programmes, mais plutôt les modules de perl # En bash : # export PERL5LIB=/chemin/vers/modules/perl:/chemin/vers/autres/modules # En tcsh : # setenv PERL5LIB /chemin/vers/modules/perl:/chemin/vers/autres/modules # Si les modules sont installés dans les emplacements standard de # perl, c'est inutile use ALTree::Chi2 (); use ALTree::Import; use ALTree::Utils qw(erreur); use ALTree::Input qw(PrepareTree); #use Newchi2treeUtils; use Math::TamuAnova; #use NAnova; use ALTree::Nanova; ########################################### ######## GLOBAL VARIABLES ######### ########################################### # Variable $nodes # Ref on Hash of ('id' => Node) # my $nodes; # Variable $sites # Ref on Hash of ('site_nb' -> Site) # my $sites; ########################################### ######## CONSTANTES ######### ########################################### package SplitMode; use constant NOSPLIT => 0; use constant CHI2SPLIT => 1; package CoEvo; use constant SIMPLE => 0; use constant DOUBLE => 1; package RootMeth; use constant OUTG => 0; use constant ANC => 1; package SignUtil; use constant NO => 0; use constant YES => 1; package Seuil; use constant SAMPLESIZE => 5; use constant P_VAL_CHI2 => 0.01; use constant P_VAL_TESTPROP => 0.01; use constant ONLY_CASE => 3; package DataQual; use constant QUALI => 0; use constant QUANTI => 1; use ALTree::to_rewrite; package main; ########################################### ######### BUILDING OF THE TREE ########## ########################################### # Outgroup is not removed from the hash nodes. # It is only removed from the list of children of it's father sub RemoveOutgroup { my $tree=shift; my $outgroup=shift; my($father_outgr)=$outgroup->GetFather(); $father_outgr->DeleteChild($outgroup); } # Outgroup is put again in the list of children of it's father sub AddOutgroup { my($outgroup)=shift; my($father_outgr)=$outgroup->GetFather(); $father_outgr->AddChild($outgroup); } sub NbFils { my($node)=shift; return $node->NbChildren(); } sub Name { my($node)=shift; return $node->Name(); } ########################################################### ####### CHECK FUNCTIONS ################################### ########################################################### # Do some check on the tree # Return true (1) if the outgroup need to be removed sub CheckCorrespondance { my($tree)=shift; my($correspondance)=shift; my($name_corres)=shift; my($outgroup)=shift; my($ret)=0; #Check if all the leaf are defined in $correspondance foreach my $node ($tree->GetNodesList()) { my($nb_fils)=$node->NbChildren(); if ($nb_fils == 0) { # We are on a leaf if (not defined $correspondance->{$node->GetId()}) { if (defined($outgroup) && ($node->GetId() eq $outgroup)) { $ret=1; } else { #$node->SetCase(0); #$node->SetControl(0); if (not defined($outgroup)) { erreur("The leaf '". $node->Name(). "' is not in the input file ". "'$name_corres'.\nPerhaps this is the". " outgroup and you need to remove it (option". " --remove-outgroup).\n". "Please, check you data\n", 0); } else { erreur("The leaf '". $node->Name(). "' is not in the input file ". "'$name_corres'.\nPlease, check you data\n", 0); } } } } } # Check if all the entries for correspondance whose name begin by # H are leafs in the tree foreach my $clef (keys %{$correspondance}) { if (not $tree->HasNodeIndex($clef)) { erreur("Node '$clef' found in '$name_corres' does". " not exist in the tree. You have probably". " forgot to remove the haplotype corresponding". " to the ancestor.\nPlease, check the input file". " '$name_corres'.\n", 0); } if ($tree->GetRoot()->Name() eq $clef) { next; } else { my($nb_fils)=$tree->GetNode($clef)->NbChildren(); if ($nb_fils!=0) { erreur("'$clef' present in $name_corres is a". " internal node (not a leaf) in the tree\n". "Please, check your data"); } } } return $ret; } ################################################# ######## PARCOURS ET REMPLISSAGE ARBRE ######### ################################################# #REWRITE: sub CalculChi2 #REWRITE: sub parcours_nosplit_chi2split sub FillCaseControl { my($present_node)=shift; my($correspondance)=shift; if ($present_node->NbChildren()==0) { my($id); $id=$present_node->{"id"}; if (not defined $present_node->{"case"}) {# car sinon, pb pour H000 $present_node->{"case"} = $correspondance->{$id}->{"case"}; } if (not defined $present_node->{"control"}) { $present_node->{"control"} = $correspondance->{$id}->{"control"}; } #print $present_node->{"id"}, " m:", $present_node->{"case"}, " c:", $present_node->{"control"}, " "; } else { my($child); # print $present_node->{"id"}, " "; #123456 for $child ($present_node->GetChildrenList()) { FillCaseControl($child, $correspondance); $present_node->{"case"}+=$child->{"case"}; $present_node->{"control"}+=$child->{"control"}; } #print $present_node->{"id"}, " m:", $present_node->{"case"}," c:", $present_node->{"control"}," "; } } ######## QUANTITATIF ######## sub FillQuanti { my($present_node)=shift; my($correspondance)=shift; if ($present_node->NbChildren()==0) { my($id); $id=$present_node->{"id"}; #if (not defined $present_node->{"quanti"}) { # car sinon, pb pour H000 #$present_node->{"quanti"}=[]; #print "cor: ", Dumper($correspondance->{$id}), "\n"; foreach my $corresp (@{$correspondance->{$id}}) { $present_node->AddQuanti($corresp->[0], $corresp->[1]); } #} #DEBUG print STDERR $present_node->{"id"}, " " ; #DEBUG for (my $i=0; $i< scalar (@{$present_node->{"quanti"}}); $i++) { #DEBUG print STDERR $present_node->{"quanti"}->[$i]->[0], " (" ,$present_node->{"quanti"}->[$i]->[1], ") "; #DEBUG } #DEBUG print STDERR "\n"; } else { my($child); for $child ($present_node->GetChildrenList()) { FillQuanti($child, $correspondance); foreach my $quanti (@{$child->GetQuantiList()}) { $present_node->AddQuanti($quanti->[0], $quanti->[1]); } } #DEBUG print STDERR $present_node->{"id"}, " " ; #DEBUG for (my $i=0; $i< scalar (@{$present_node->{"quanti"}}); $i++) { #DEBUG print STDERR $present_node->{"quanti"}->[$i]->[0], " (" ,$present_node->{"quanti"}->[$i]->[1], ") "; #DEBUG } #DEBUG print STDERR "\n"; } } #REWRITE: sub ParcoursQuanti #REWRITE: sub CalculAnovaOneWay ################################################## ######## AFFICHAGE DE L' ARBRE ################## ################################################## sub LongueurTrait { my($node)=shift; my($level)=shift; return(" "x$level."------"); } sub AffichageParLevel # Ne prend pas une fonction pour l'affichage { my ($racine)=shift; my ($len)=6; my $AffichageInterne; $AffichageInterne= sub { my ($node) = shift; my ($start) = shift; # début commun à tout ce noeud (et descendants) my ($up) = shift; # quand on est au dessus de ce noeud my ($here) =shift; # quand on affiche ce noeud my ($down) =shift; # quand on est au dessous de ce noeud my($nb_fils)=NbFils($node); my($i); if ($nb_fils >= 1) { $AffichageInterne->($node->GetChild(0), $start.$up.(" "x$len), " ", "/", "|"); } for ($i=1; $i<$nb_fils/2; $i++) { $AffichageInterne->($node->GetChild($i), $start.$up.(" "x$len), "|", "|", "|"); } print $start.$here.("-"x$len)."* ", Name($node), "\n"; for ( ;$i < $nb_fils-1; $i++) { $AffichageInterne->($node->GetChild($i), $start.$down.(" "x$len), "|", "|", " "); } if ($nb_fils > 1) { $AffichageInterne->($node->GetChild($nb_fils-1), $start.$down.(" "x$len), "|", "\\", " "); } }; $AffichageInterne->($racine, "", " ", "-", " "); } sub AffichageArbre # Prend une fonction pour l'affichage { my ($racine)=shift; my ($function)=shift; my ($len)=4; my $AffichageInterne; $AffichageInterne= sub { my ($node) = shift; my ($start) = shift; # début commun à tout ce noeud (et descendants) my ($up) = shift; # quand on est au dessus de ce noeud my ($here) =shift; # quand on affiche ce noeud my ($down) =shift; # quand on est au dessous de ce noeud my ($at) =shift; # quand on les autres lignes de ce noeud my($nb_fils)=NbFils($node); my($i, $j, $sep); my (@tableau)=split (/\n/, $function->($node)); if ($nb_fils >= 1) { $AffichageInterne->($node->{"children"}->[0], $start.$up.(" "x$len), " ", "/", "|", "|"); } for ($i=1; $i<$nb_fils/2; $i++) { $AffichageInterne->($node->{"children"}->[$i], $start.$up.(" "x$len), "|", "|", "|", "|"); } print $start.$here.("-"x$len)."* ", $tableau[0], "\n"; if ($nb_fils > 1) { $sep="|"; } else { $sep=" "; } for ($j=1; $j<=$#tableau; $j++) { print $start.$at.(" "x$len).$sep." ", $tableau[$j], "\n"; } # print $start.$here.("-"x$len)."* ", $function->($node), "\n"; for ( ;$i < $nb_fils-1; $i++) { $AffichageInterne->($node->{"children"}->[$i], $start.$down.(" "x$len), "|", "|", "|", "|"); } if ($nb_fils > 1) { $AffichageInterne->($node->{"children"}->[$nb_fils-1], $start.$down.(" "x$len), "|", "\\", " ", " "); } }; $AffichageInterne->($racine, "", " ", "-", " ", " "); } ############################################################### ## FONCTION DEFINISSANT LES INFOS QUI VONT ETRE AFFICHEES ##### ############################################################### # Return results of the test: ddl, p_value, significatif or not, texte and warning sub TestInfos { my($node)=shift; return InfosAffichees($node, 2); # my($chaine)=Name($node)."\n"; # my($lbl_test)=0; # my $test; # if (defined $node->{"res_test"}) { # for $test (@{$node->{"res_test"}}) { # $chaine.="[".$test->{"level"}."]"." ddl= ".$test->{"ddl"}. # " chi2= ".$test->{"chi2"}. # " p_value_chi2= ".$test->{"p_val"}. # } # } # return($chaine); } sub AssociationInfos { my($node)=shift; return InfosAffichees($node, 1); } sub TreeInfos { my($node)=shift; return InfosAffichees($node, 0); } sub InfosQuanti { my($node)=shift; return InfosAffichees($node, 3); } sub InfosQuantiNoperm { my($node)=shift; return InfosAffichees($node, 4); } #Return ddl, level, pvalues and chi2 #REWRITE: sub InfosAffichees ########################################################## ######## MODIFICATIONS/CALCULS SUR L'ARBRE ############### ########################################################## sub FusionBrNulles { my($present_node)=shift; my($child); my($nb_fils)=NbFils($present_node); $present_node->{"label"}=$present_node->{"id"}; $present_node->RecordOrigFather(); if ($nb_fils != 0) { # on n'est pas dans une feuille $present_node->AddOldChild($present_node->GetChildrenList()); $present_node->ForgetChildren(); foreach $child ($present_node->GetOldChildrenList()) { if (! FusionBrNulles($child)) { $present_node->AddChild($child); } } if (not $present_node->HasFather()) { return 0; } if (not defined $present_node->{"br_len"}) { print STDERR "Branch lenght not defined for ", $present_node->{"id"}, "\n"; exit 1; } elsif ($present_node->GetBrLen() == 0) { # branche nulle #print "brnulle ", $present_node->{"id"}, " "; foreach $child (@{$present_node->{"children"}}) { $child->{"father"}=$present_node->{"father"}; #remplace father #print "father's name ", $present_node->GetFather()->Name(),"\n"; $present_node->GetFather()->AddChild($child); } $present_node->{"father"}->{"label"}.="+(".$present_node->{"label"}.")"; return 1; } } return 0; } ########################################################## ################### CLEAN FUNCTION ###################### ########################################################## sub CleanStats { my($tree)=shift; foreach my $node ($tree->GetNodesList()) { $node->EraseCase(); $node->EraseControl(); $node->EraseQuanti(); delete $node->{"res_test"}; } } ########################################################## ########### FUNCTIONS FOR ASSOCIATION TEST ############### ########################################################## ############ QUALITATIF ############### # From the hash correspondance, fill the variables necessary for Resampling sub Correspond2Resampling { my($correspondance)=shift; my($haploID, $ref_effectif, $total_mal, $total_tem); foreach $haploID (keys %{$correspondance}) { $ref_effectif->{$haploID}=$correspondance->{$haploID}->{"case"}+ $correspondance->{$haploID}->{"control"}; $total_mal+=$correspondance->{$haploID}->{"case"}; $total_tem+=$correspondance->{$haploID}->{"control"}; } # DEBUG print "total_mal=$total_mal total_tem=$total_tem\n"; return ($total_mal, $total_tem, $ref_effectif); } sub Resampling # repompée intégralement de tree_resampling puis modifiée.... { my($total_mal) = shift; my($total_tem) = shift; my($ref_effectif) = shift; # ref on a hash: keys=H002 value= nbmal+nb_tem my($clefs, $alea, $i); my($new_correspondance); foreach $clefs (keys %{$ref_effectif}) { $new_correspondance->{$clefs}->{"case"}=0; $new_correspondance->{$clefs}->{"control"}=0; for ($i=0; $i<$ref_effectif->{$clefs}; $i++) { $alea=rand($total_mal+$total_tem); # print "alea=$alea"; if ($alea < $total_mal) { # print "inf\n"; $total_mal--; $new_correspondance->{$clefs}->{"case"}++; $new_correspondance->{$clefs}->{"control"}+=0; } else { # print "sup\n"; $total_tem--; $new_correspondance->{$clefs}->{"control"}++; $new_correspondance->{$clefs}->{"case"}+=0; } } # print "clefs:$clefs nb_mal=$nb_mal{$clefs}, nb_tem=$nb_tem{$clefs}\n"; } return ($new_correspondance); } sub computeTreeStructure($) { my $racine=shift; my $nextIndex=shift; my (@leaf_refs, @leaf_depth, @leaf_parent, @nleaf_parent); my $nleaf2id={}; # Hash $node -> [index, $node->Father()] my $computeNLeaf; $computeNLeaf = sub { my $nodeList=shift; my $max_depth=0; my $nextIndex=0; my @childNodeList=(); my $parent; foreach my $node (@{$nodeList}) { push @childNodeList, $node->GetChildrenList(); } if (scalar(@childNodeList) > 0) { ($max_depth,$nextIndex)=$computeNLeaf->(\@childNodeList, $nextIndex); } foreach my $node (@{$nodeList}) { # Si on est un noeud interne sans id, on définit un index if (NbFils($node) != 0 && !exists($nleaf2id->{$node})) { $nleaf2id->{$node}=[$nextIndex++, $node->Father()]; } } if (scalar(@childNodeList) == 1) { # Dans le cas où on a juste une seule branche, on "fusionne" # avec le noeud père (on lui assigne à ce dernier le même index # que nous) my $parent=$childNodeList[0]->Father(); if (defined($parent)) { $nleaf2id->{$parent}=[$nleaf2id->{$childNodeList[0]}->[0], $parent->Father()] ; } } if (scalar(@childNodeList) > 0) { $max_depth++; } return ($max_depth, $nextIndex); }; my ($max_depth,$nbIntNodes)=$computeNLeaf->([$racine], 0); foreach my $node (keys(%{$nleaf2id})) { my ($id_my, $parent)=@{$nleaf2id->{$node}}; if (!defined($parent) || !exists($nleaf2id->{$parent})) { $nleaf_parent[$id_my]=-1; } else { my $id_parent=$nleaf2id->{$parent}->[0]; if ($id_parent != $id_my) { $nleaf_parent[$id_my]=$id_parent; } } } my $computeLeaf; $computeLeaf = sub { my $nodeList=shift; my $depth=shift; my @childNodeList=(); my @leafList=(); foreach my $node (@{$nodeList}) { if (NbFils($node) != 0) { push @childNodeList, $node->GetChildrenList(); } else { push @leafList, $node; } } if (scalar(@childNodeList) > 0) { my $rec_depth=$depth; if (scalar(@childNodeList) > 1) { $rec_depth++; } $computeLeaf->(\@childNodeList, $rec_depth); } foreach my $node (@leafList) { push @leaf_refs, $node; push @leaf_depth, $depth; push @leaf_parent, $nleaf2id->{$node->Father()}->[0]; } return; }; $computeLeaf->([$racine], 0); return (\@leaf_refs, \@leaf_depth, \@leaf_parent, \@nleaf_parent, $max_depth); } sub computeChi2 { my $leaf_refs=shift; my $leaf_depth=shift; my $leaf_parent=shift; my $nleaf_parent=shift; my $max_depth=shift; my $correspondance=shift; my $prolonge=shift; my $sign_util=shift; my @results; my $nb_leaves=scalar(@{$leaf_refs}); my $first_leaf=0; my $nb_used_leaves=0; my @intNodes; my %next_intNodes_id; for(my $depth = $max_depth; $depth > 0; $depth--) { my @leaves; my @prev_intNodes_id=keys %next_intNodes_id; %next_intNodes_id=(); my $next_first_leaf; { my $i; for ($i=$first_leaf; $i<$nb_leaves && $leaf_depth->[$i] == $depth; $i++) { my $id=$leaf_refs->[$i]->GetId(); push @leaves, $correspondance->{$id}; my $parent=$leaf_parent->[$i]; if ($parent != -1) { $next_intNodes_id{$parent} = 1; $intNodes[$parent]->{"case"} += $correspondance->{$id}->{"case"}; $intNodes[$parent]->{"control"} += $correspondance->{$id}->{"control"}; } } $next_first_leaf=$i; } if ($prolonge == 1) { for (my $i=$next_first_leaf; $i<$nb_leaves; $i++) { my $id=$leaf_refs->[$i]->GetId(); push @leaves, $correspondance->{$id}; } } foreach my $id (@prev_intNodes_id) { push @leaves, $intNodes[$id]; my $parent=$nleaf_parent->[$id]; if ($parent != -1) { $next_intNodes_id{$parent} = 1; $intNodes[$parent]->{"case"} += $intNodes[$id]->{"case"}; $intNodes[$parent]->{"control"} += $intNodes[$id]->{"control"}; } } my $nb_used_leaves=$next_first_leaf - $first_leaf; $first_leaf=$next_first_leaf; my($test_results)={}; CalculChi2(\@leaves, scalar(@leaves)-1, $test_results, $sign_util ); unshift @results, $test_results->{"chi2"}; } return \@results; } sub RepeatAssociation { my($tree)=shift; my($dataqual)=shift; my($correspondance)=shift; my($prolonge)=shift; my($nb_permutation)= shift; my($sign_util)=SignUtil::NO; my($racine)=$tree->GetRoot(); my($ligne_stats)=[]; print "\n Number of permutation: $nb_permutation\n"; my($value_per_line, $test_res); my($corrected_values); if ($dataqual == DataQual::QUALI) { my($leaf_refs,$leaf_depth,$leaf_parent,$nleaf_parent, $max_depth) =computeTreeStructure($racine); $value_per_line=$max_depth; if(0) { my $res=computeChi2($leaf_refs,$leaf_depth,$leaf_parent,$nleaf_parent, $max_depth, $correspondance, $prolonge, $sign_util); push @{$ligne_stats}, @{$res}; $value_per_line=scalar(@{$res}); my($total_mal, $total_tem, $effectif); ($total_mal, $total_tem, $effectif)=Correspond2Resampling($correspondance); for (my $i=0; $i<$nb_permutation; $i++) { my $new_correspondance=Resampling($total_mal, $total_tem, $effectif); my $res=computeChi2($leaf_refs,$leaf_depth,$leaf_parent,$nleaf_parent, $max_depth, $new_correspondance, $prolonge, $sign_util); push @{$ligne_stats}, @{$res}; } } my $resamp=ALTree::CUtils::ResamplingChi2( $leaf_refs, $leaf_depth, $leaf_parent, $nleaf_parent, $max_depth, $prolonge, $nb_permutation, 0 ); $ligne_stats=$resamp->{"chi2s"}; $corrected_values=ALTree::CUtils::DoublePermutation ($nb_permutation+1, $value_per_line, $ligne_stats); } else { foreach $test_res (@{$racine->{"res_test"}}) { # Si on n'a qu'une seule branche, la p-value n'est pas définie if ($test_res->{"nb_facteurs"} > 1) { $value_per_line++; } } StockeQuanti($ligne_stats, $racine); # F values corresponding to the real data are put to @{$ligne_F} #print STDERR Dumper($correspondance), "\n"; for (my $i=0; $i<$nb_permutation; $i++) { CleanStats($tree); AssociationQuanti($racine, $correspondance, $prolonge, $sign_util); StockeQuanti($ligne_stats, $racine); } $corrected_values=ALTree::CUtils::DoublePermutation ($nb_permutation+1, $value_per_line, $ligne_stats); } return($value_per_line, $corrected_values); } ############ QUANTITATIF ############### # From the hash correspondance, fill the variables necessary for Resampling sub Correspond2ResamplingQuanti { my($correspondance)=shift; my($haploID, $nbval_per_haplo, @valeurs_tot); foreach $haploID (keys %{$correspondance}) { $nbval_per_haplo->{$haploID}=scalar(@{$correspondance->{$haploID}}); foreach my $valeurs (@{$correspondance->{$haploID}}) { push (@valeurs_tot, $valeurs->[0]); } } #DEBUG print STDERR" TOUTES VAL:\n"; #DEBUG foreach my $val (@valeurs_tot) { #DEBUG print STDERR $val, " " ; #DEBUG } #DEBUG print STDERR"\n"; #DEBUG print STDERR " NB_VAL_PER_HAPLO "; #DEBUG foreach $haploID (keys %{$nbval_per_haplo}) { #DEBUG print STDERR $haploID, " " ,$nbval_per_haplo->{$haploID}, "\n"; #DEBUG } return (\@valeurs_tot, $nbval_per_haplo); } sub ResamplingQuanti { my $valeurs_tot = shift; my $nbval_per_haplo = shift; my $new_correspondance; my $num_haplo=0; foreach my $haploID (keys %{$nbval_per_haplo}) { $num_haplo++; for (my $i=0; $i<$nbval_per_haplo->{$haploID}; $i++) { my $nb= scalar (@{$valeurs_tot}); my $alea = int(rand($nb)); # Je récupère bien un nb entre 0 et le dernier élément du tab #DEBUG print STDERR "ALEA$haploID ", $alea , " "; $new_correspondance->{$haploID}->[$i]->[0]=$valeurs_tot->[$alea]; $new_correspondance->{$haploID}->[$i]->[1]=$num_haplo; splice(@{$valeurs_tot}, $alea, 1); } } #DEBUG print "\n TEST\n"; #DEBUG foreach my $haploID (keys(%{$new_correspondance})) { #DEBUG print STDERR $haploID , " " ; #DEBUG for (my $i=0; $i{$haploID}}); $i++) { #DEBUG print STDERR $new_correspondance->{$haploID}->[$i]->[0], " "; #DEBUG } #DEBUG print STDERR "\n"; #DEBUG } return ($new_correspondance); } sub StockeQuanti { my($ligne_chi2)=shift; my $racine=shift; my $test_res; foreach $test_res (@{$racine->{"res_test"}}) { # Si on n'a qu'une seule branche, la p-value n'est pas définie if ($test_res->{"nb_facteurs"} > 1) { push @{$ligne_chi2}, $test_res->{"F"}; } } # Fill a 2*n table: each line containig chi2 and each columns # corresponding to one repetition #push (@{$table_of_line}, \@ligne_chi2); } sub AssociationQuanti { my($racine)=shift; my($correspondance)=shift; my($prolonge)=shift; my($sign_util)=shift; my($valeur_tot, $nbval_per_haplo, $new_correspondance); ($valeur_tot, $nbval_per_haplo)=Correspond2ResamplingQuanti($correspondance); ($new_correspondance)=ResamplingQuanti($valeur_tot, $nbval_per_haplo); # DEBUG my($haploID); #foreach $haploID (keys %{$new_correspondance}) { # print "Haplo: $haploID mal= ",$new_correspondance->{$haploID}->{"case"}, " tem=", $new_correspondance->{$haploID}->{"control"},"\n"; #} #print "\n"; FillQuanti($racine,$new_correspondance); ParcoursQuanti($racine->{"children"}, $prolonge, SplitMode::NOSPLIT, $racine, $sign_util); } ########################################################## ################# LOCALISATION ########################### ########################################################## sub CalculateRit { my($tree)=shift; my($s_site_nb)=shift; my($s_state)=shift; my($co_evo)=shift; my($clef); my($info_mutation); my($s_t, $s_t_rev)=(0,0); my($s_sitesens_per_tree)=$tree->GetSite($s_site_nb) ->GetSens($s_state); if (not defined($s_sitesens_per_tree)) { warn("No S site (number $s_site_nb)". " with sens '".$s_state->GetLabel()."' found\n"); } # Calcul du Rit # Notation des commentaires: le s_site mute de T->M foreach my $node ($s_sitesens_per_tree->GetNodesList()) { foreach my $sitesens_per_tree ($node->GetApoList()) { if ($sitesens_per_tree == $s_sitesens_per_tree) { # on profite du fait pour incrémenter le nombre de # mutation de s_site # (On aurait aussi pu globalement incrémenter s_t # de la taille du tableau du premier foreach : # en effet, on passe ici une fois pour chaque # foreach du second niveau) $s_t++; } else { # le sitesens co-mute par ex de 1->2 $sitesens_per_tree->IncRit(); } } } if ($co_evo == CoEvo::DOUBLE){ # On 'retourne' le sens s_state $s_state->Switch(); my $s_sitesens_per_tree_rev=$tree->GetSite($s_site_nb) ->GetSens($s_state); # On le remet dans le bon sens après l'avoir tout tourneboulé $s_state->Switch(); if (defined($s_sitesens_per_tree_rev)) { # Calcul du Rit foreach my $node ($s_sitesens_per_tree_rev->GetNodesList()) { foreach my $sitesens_per_tree ($node->GetApoList()) { if ($sitesens_per_tree == $s_sitesens_per_tree_rev) { # nombre de mutation inverse du s_site (M->T) # (même remarque que précédemment) $s_t_rev++; } else { # le sitesens co-mute de 2->1 avec s_site M->T # donc on incrémente Rit pour sitesens 1->2 $sitesens_per_tree->GetSensRev()->IncRit(); } } } } } elsif ($co_evo == CoEvo::SIMPLE){ } else { die "Invalid value for co_evo: $co_evo - should be 0 or 1\n"; } return($s_t, $s_t_rev); } sub CalculateEit { my($tree)=shift; # Comme d'hab my($s_site_nb)=shift; # Pas utile ici ! my($s_t)=shift; # nombre de fois où S mute T->M my($s_t_rev)=shift; # nombre de fois où S mute M->T my($b_t)=shift; # nombre de branches au total dans l'arbre # (après fusion des branches nulles) # Calcul du Eit (et implicitement le Mit) foreach my $site_per_tree ($tree->GetSitesList()) { foreach my $sitesens_per_tree ($site_per_tree->GetSensList()) { $sitesens_per_tree-> SetEit(($sitesens_per_tree->GetMit()*$s_t+ $sitesens_per_tree->GetSensRev()->GetMit()*$s_t_rev) /$b_t); # print " m_it= ", $sitesens_per_tree->GetMit(),"\n"; # print $site_per_tree->GetSiteNb()," E_i ", $sitesens_per_tree->GetEit(), "\n"; # print " R_it= ", $sitesens_per_tree->GetRit(), "\n"; # print " V_it= ", $sitesens_per_tree->GetVit(),"\n"; } } } sub PrintAllVit { my($tree)=shift; my($s_site_nb)=shift; my($mutation , $sens); foreach my $site_per_tree ($tree->GetSitesList()) { if ($site_per_tree->GetSiteNb() == $s_site_nb) { next; } foreach my $sitesens_per_tree ($site_per_tree->GetSensList()) { print "mutation= ",$site_per_tree->GetSiteNb(), "\t"; print "sens= ", $sitesens_per_tree->GetSensLabel(),"\n"; print " m_it= ", $sitesens_per_tree->GetMit(), " R_it= ", $sitesens_per_tree->GetRit(), " E_it= ", $sitesens_per_tree->GetEit(), " V_it= ", $sitesens_per_tree->GetVit(),"\n"; } } } sub PrintAllVi { my($foret)=shift; my($s_site_nb)=shift; my($mutation , $sens); foreach my $site_per_foret ($foret->GetSitesList()) { if ($site_per_foret->GetSiteNb() == $s_site_nb) { next; } foreach my $sitesens_per_foret ($site_per_foret->GetSensList()) { print "mutation= ",$site_per_foret->GetSiteNb(), "\t"; print "sens= ", $sitesens_per_foret->GetSensLabel(),"\t"; print " V_i= ", $sitesens_per_foret->GetVi(),"\n"; } } } # Pour chaque site, on a choisi un sens en fonction du Vi (max) et on # affiche le tableau des Vi pour tous les sites et pour le sens choisi sub PrintViMax { my($foret)=shift; my($s_site_nb)=shift; foreach my $site ($foret->GetViMaxSiteList()) { if ($site->GetSiteNb() == $s_site_nb) { next; } print "site number ", $site->GetSiteNb(), "\n"; foreach my $sens ($site->GetViMaxSensList()) { print "\tsens ", $sens->GetSensLabel(), "\t"; print "V_i = ", $sens->GetVi(), "\n"; } } } # Affiche le tableau de tous les Vi, pour tes les sites et pour tous # les sens (triés par ordre décroissant) sub PrintViMaxSens { my($foret)=shift; my($s_site_nb)=shift; foreach my $sens ($foret->GetViMaxSensList()) { if ($sens->GetSiteNb() == $s_site_nb) { next; } print "site number ", $sens->GetSiteNb(), "\t"; print "\tsens ", $sens->GetSensLabel(), "\t"; print "V_i = ", $sens->GetVi(), "\n"; } } ########################################################### # Fonctions du prog principal ############################# ########################################################### sub check_tree_numbers { my $num_tree_in_file=shift; my $user_tree_numbers=shift; my @tree_numbers; my %selected_trees; for my $tree_num (@{$user_tree_numbers}) { if ($tree_num < 1) { erreur("Invalid tree-to-analyse $tree_num\n", 0); } elsif ($tree_num > $num_tree_in_file) { erreur("Invalid tree-to-analyse $tree_num (only $num_tree_in_file in file)\n", 0); } if (defined($selected_trees{$tree_num})) { erreur("Invalid tree-to-analyse $tree_num (already selected)\n", 0); } $selected_trees{$tree_num}=1; # Correspondance entre les numéros de l'utilisateur et les # indices dans le tableau (ie commence à 1 ou à 0) push @tree_numbers, $tree_num-1; } return \@tree_numbers; } sub select_trees { my $max=shift; my $nb=shift; my @tab; for (my $i=0; $i<$max; $i++) { $tab[$i]=$i; } my @selected; for (my $i=0; $i<$nb; $i++) { my $alea=int(rand($max--)); push @selected, $tab[$alea]; splice(@tab, $alea, 1); } return \@selected; } sub PrintTree { my $tree=shift; my ($racine)=$tree->GetRoot(); AffichageArbre($racine, \&TreeInfos); print "\n\n"; } sub SwitchRoot { my $tree= shift; my $outgroup=shift; my $root=$outgroup->GetFather(); $tree->ChangeRoot($root); my $newracine=$tree->GetRoot(); } ################################################################ #################### TRAITE PLS FICHIERS ####################### ################################################################ sub TraiteSeveralFiles { #DEBUG print STDERR "Pool rés des fichiers\n"; my $res_files = shift; my ($nb_files); my $p_finale=0; my $pmin_min=99; my @distrib=(); for (my $i=0; $i<=$#$res_files; $i++) { shift(@{$res_files->[$i]->{"distrib_pmin"}}); push (@distrib, @{$res_files->[$i]->{"distrib_pmin"}}); if ( $res_files->[$i]->{"pmin"} < $pmin_min) { $pmin_min = $res_files->[$i]->{"pmin"}; } } print "La pmin minimale est $pmin_min, la taille de la distrib pmin est ", scalar(@distrib), "\n"; # sort {$a <=> $b} @distrib; # trie du plus petit au plus grand my $compte=0; foreach my $elem (@distrib) { $compte ++; #DEBUG print STDERR "elem=$elem\n"; if ($elem<=$pmin_min) { $p_finale ++; } } # } else { return $p_finale/$compte; # } } ########################################################### sub manage_options { my %options; my $result; my $choix={ "data-type" => { "snp" => DataType::SNP, "dna" => DataType::DNA, }, "data-qual" => { "quantitative" => DataQual::QUANTI, "qualitative" => DataQual::QUALI, }, "rootmeth" => { "outgroup" => RootMeth::OUTG, "ancestor" => RootMeth::ANC, }, "tree-building-program" => { "phylip" => PhylProg::PHYLIP, "paup" => PhylProg::PAUP, "paml" => PhylProg::PAML, }, "splitmode" => { "chi2split" => SplitMode::CHI2SPLIT, "nosplit" => SplitMode::NOSPLIT, }, "co-evo" => { "simple" => CoEvo::SIMPLE, "double" => CoEvo::DOUBLE, }, }; my $handle_choix = sub { my $option=shift; my $value=shift; foreach my $key (keys %{$choix->{$option}}) { if ($key=~/^$value/i) { $options{$option."-value"}=$choix->{$option}->{$key}; return; } } die "Option '$option': unauthorized value '$value'\n"; }; my $handle_args = sub { my $name=shift; die "What about '$name' ?\n"; }; my $handle_progname = sub { my $name=shift; die "What about '$name' ?\n"; }; %options=("<>" => $handle_args); foreach my $option (keys %{$choix}) { $options{$option}=$handle_choix; } GetOptions (\%options, "version", "short-help|h", "help", "man", "association|a!", # !!! demander pour le ! à Vince "s-localisation|l!", "first-input-file|i=s", "second-input-file|j=s", "output-file|o=s", "data-type|t=s", "data-qual|q=s", "remove-outgroup!", "outgroup=s", "tree-building-program|p=s", "splitmode|s=s", "no-prolongation!", "chi2-threshold|n=f", "permutations|r=i", "number-of-trees-to-analyse=i", "tree-to-analyse=i@", "s-site-number=i", "s-site-characters=s", "co-evo|e=s", "print-tree!", "anc-seq=s", "nb-files=i", "<>", ) or pod2usage(2); if (defined($options{"version"})) { print $0, " version ", $VERSION, "\n"; print "(Perl version ", $], ")\n"; exit 0; } if (defined($options{"short-help"})) { pod2usage(-exitstatus => 0, -verbose => 0); } if (defined($options{"help"})) { pod2usage(-exitstatus => 0, -verbose => 1); } if (defined($options{"man"})) { pod2usage(-exitstatus => 0, -verbose => 2); } delete($options{"<>"}); foreach my $option (keys %{$choix}) { delete($options{$option}); if (exists($options{$option."-value"})) { $options{$option}=$options{$option."-value"}; delete($options{$option."-value"}); } } return \%options; } sub main { my($rec_program); my $result; my $options; my $option_require = sub { my $option=shift; my $texte=shift; if (not exists($options->{$option})) { my $msg="Error: option '$option' needed"; if (defined($texte)) { $msg.="\n".$texte; } pod2usage("Error: option '$option' required"); } }; my $option_value = sub { my $option=shift; my $default=shift; my $msg=shift; if (not exists($options->{$option})) { if (defined $msg) { print STDERR $msg, "\n"; } return $default; } return $options->{$option}; }; my $option_selected = sub { my $option=shift; my $texte=shift; if (not exists($options->{$option})) { my $msg="option '$option' not selected"; if (defined($texte)) { $msg.="\n".$texte; } return 0; } else { return 1; } }; $options=manage_options(); my($prolonge)=$option_value->("prolongation", 1); my($print_tree)=$option_value->("print-tree", 0); $option_require->("tree-building-program"); my($phylo_program)=$option_value->("tree-building-program"); my($association)=$option_value->("association", 0); my $nb_files = $option_value->("nb-files", 0); if ($nb_files == 0) { $nb_files=1 } $option_require->("first-input-file"); my $input_files=$option_value->("first-input-file"); my @input_files=split(/:/, $input_files); my $nb_read_files = scalar(@input_files); if ($nb_read_files != $nb_files) { erreur("The number of files really given ($nb_read_files) is not equal to". " the number of files specified in the option --nb-files ($nb_files)\n",0) } # name of the file containing haploID, nb case and nb control my($tot_name_corres)=$option_value->("second-input-file", "correspond.txt"); my @tab_name_corres = split(/:/, $tot_name_corres); my($s_loc)=$option_value->("s-localisation", 0); if (!$association && !$s_loc) { erreur("Should I perform the association test or the". " localisation test ?\n(use option '--association'". " or '--s-localisation'.)\n", 1); } if ($option_selected->("output-file")) { my $out=$option_value->("output-file"); open(STDOUT, '>', $out) or erreur("Unable to write in '$out': $!\n", 0); } my $datatype; my $ancetre=""; if ($phylo_program == PhylProg::PHYLIP) { $option_require->("data-type"); $datatype=$option_value->("data-type"); if ($option_selected->("anc-seq")) { $ancetre=$option_value->("anc-seq"); } } my $dataqual=""; if ($association == 1) { $option_require->("data-qual"); $dataqual = $option_value->("data-qual"); } ########################################################### # Récupération et précalcul des arbres qu'on va utiliser ########################################################### my @trees; my @res_files; #contient les ref sur les résultats de chaque fichier analysé my($all_files_foret)=ALTree::Foret->New(); my $s_site_nb; { for (my $file=1; $file<=$nb_files; $file ++) { my $input=$input_files[$file-1]; #DEBUG print STDERR $input, "\n"; print STDERR "Analyzing file number $file\n"; my ($input_file)=ALTree::Input::ReadInputFile1($input, $phylo_program, $datatype, $ancetre); my $num_trees_in_file=$input_file->{"nb_trees"}; my(@no_tree); my($user_tree_numbers)=$option_value->("tree-to-analyse", \@no_tree); my $tree_numbers=check_tree_numbers($num_trees_in_file, $user_tree_numbers); my $nb_tree_selected=scalar(@{$tree_numbers}); if ($association) { if ($nb_tree_selected == 0) { $tree_numbers=select_trees($num_trees_in_file, 1); } elsif ($nb_tree_selected > 1) { erreur("Only one tree can be selected for association\n"); } } if ($s_loc) { if ($nb_tree_selected == 0) { my($trees_to_analyse)= $option_value->("number-of-trees-to-analyse", undef); if (not defined($trees_to_analyse)) { print STDERR "Warning: no option". "number-of-trees-to-analyse or tree-to-analyse:". " using all ($num_trees_in_file)". " trees"; $trees_to_analyse=$num_trees_in_file; } if ($trees_to_analyse>$num_trees_in_file) { erreur("Invalid number of trees to analyse :". " your file contains only". " $num_trees_in_file trees\n", 0); } if ($trees_to_analyse<1) { erreur("Not enought trees to analyse". " ($trees_to_analyse)\n", 0); } $tree_numbers=select_trees($num_trees_in_file, $trees_to_analyse); } elsif ($nb_tree_selected > $num_trees_in_file) { erreur("Invalid number of trees to analyse :". " your file contains only". " $num_trees_in_file trees\n", 0); } } my $anctype=$input_file->{"anctype"}; if ($anctype == ANC::Rooted && ($option_selected->("outgroup") || $option_selected->("remove-outgroup"))) { erreur("You cannot use the options '--outgroup' or". " '--remove-outgroup' because your input file '" .$input_file->{"filename"}."' contains trees rooted". " with an ancestral sequence.\n", 1); } if ($anctype == ANC::OutGroup) { my $outgroup=$input_file->{"outgroup"}; if (defined($outgroup)) { if ($option_value->("outgroup", $outgroup) ne $outgroup) { erreur("The option '--outgroup' tell me to use '". $option_value->("outgroup")."' as an outgroup ". "whereas the file '".$input_file->{"filename"}. "' contains trees rooted with the outgroup '". $outgroup."'.\n", 1); } } else { $input_file->{"outgroup"}=$option_value->("outgroup", undef); } } my ($switchroot)=""; if ($anctype == ANC::Unrooted) { $input_file->{"outgroup"}=$option_value->("outgroup", undef); $switchroot=$option_value->("outgroup", 0); } if ($option_selected->("remove-outgroup") && not defined($input_file->{"outgroup"})) { if ($anctype == ANC::OutGroup) { erreur("You tell me to remove the outgroup for the". " analyses. ". "The input file '".$input_file->{"filename"}. "' contains trees rooted using ". "an outgroup but I cannot automaticaly find which". "one has been used.\nPlease, provide me the". "outgroup (option '--outgroup')\n", 0); } else { erreur("You tell me to remove the outgroup for the". " analyses, ". "however, I do not know what is the outgroup\n". "Please, use the '--outgroup' option\n", 0); } } if ($association && $anctype == ANC::Unrooted && not defined($input_file->{"outgroup"})) { erreur("I need a rooted tree to perform the association". " test. However, the input file '". $input_file->{"filename"}."' contains unrooted trees\n". "Please, provide me an outgroup (option '--outgroup')\n" , 1); #erreur("I need a rooted tree to perform the association". # " test.\nThe input file '".$input_file->{"filename"}. # "' contains trees rooted using ". # "an outgroup\nbut I cannot automaticaly find which one". # " has been used.\nPlease, provide me the outgroup". # " (option '--outgroup')\n" # , 1); } my $remove_outgroup=$option_value->("remove-outgroup", 0); my @trees =(); for my $num_tree (@{$tree_numbers}) { my $file_tree=PrepareTree($phylo_program, $input_file, $datatype, $ancetre, $num_tree); push @trees, $file_tree; my ($tree)=$file_tree->{"tree"}; my $outgroup; if (defined($input_file->{"outgroup"})) { $outgroup=$tree->GetNode($input_file->{"outgroup"}); if (not defined($outgroup)) { erreur ("I cannot find the outgroup '". $input_file->{"outgroup"}."' in the". " tree number ".($file_tree->{"index"}+1). " in file '".$input_file->{"filename"}. "'. It does not correspond to any node!\n", 0); } if (!$switchroot) { if ($outgroup->GetFather() != $tree->GetRoot()) { erreur("The outgroup '".$outgroup->Name(). "' is not just under the root ". "for the tree number ". ($file_tree->{"index"}+1). " in file '".$input_file->{"filename"}. "'.\nDo you choose the rigth outgroup ?\n", 0); } } } if ($switchroot) { SwitchRoot($tree, $outgroup); } if ($remove_outgroup) { RemoveOutgroup($tree, $outgroup); } if ($print_tree) { PrintTree($tree); } if ($s_loc && defined($file_tree->{"has_ambiguity"})) { erreur("Some apomorphies are ambiguous in the". " tree number ".($file_tree->{"index"}+1). " in file '".$input_file->{"filename"}. "' (I find the character state '?').". " It cannot be used for the localisation test.\n", 0); } } print STDERR "read done\n"; ########################################################### # Let's go. D'abord pour l'association ########################################################### if ($association == 1) { my($splitmode)=SplitMode::NOSPLIT; # nosplit est imposé # name of the file containing haploID, nb case and nb control my($name_corres)= $tab_name_corres[$file-1]; if ($name_corres eq "") { die "check the number of file containing case/controle. There should ". "be as many such files as first input files\n"; } my($correspondance); # ref on a hash containing haploID refferring to # a hash containing nb case and nb control # or to a tab containing the different quantitative values if ($dataqual == DataQual::QUALI) { $correspondance=ALTree::Input::ReadCorrespondQuali($name_corres); } elsif ($dataqual == DataQual::QUANTI) { $correspondance=ALTree::Input::ReadCorrespondQuanti($name_corres); } else { erreur("invalid choice for option data-qual, $dataqual. It should be either qualitative or quantitative", 0); } my($file_tree)=$trees[0]; my($tree)=$file_tree->{"tree"}; my($outgroup)=$file_tree->{"file"}->{"outgroup"}; if (CheckCorrespondance($tree, $correspondance, $name_corres, $outgroup)) { if (!$option_selected->("remove-outgroup")) { print STDERR "Warning: assuming option '--remove-outgroup' as". " the outgroup '".$outgroup. "' is not in the file '".$name_corres."'\n"; RemoveOutgroup($tree, $tree->GetNode($outgroup)); } } else { if ($option_selected->("remove-outgroup")) { erreur("You tell me to remove the outgroup '$outgroup',". " however it is present in the file '". $name_corres.". Please, check your data.'\n", 0); } } #print "\n"; FusionBrNulles($tree->GetRoot()); # Structure changée, on recalcul... $tree->FillHeight(); $tree->FillLevel(); if ($dataqual == DataQual::QUALI) { FillCaseControl($tree->GetRoot(),$correspondance); } else { FillQuanti($tree->GetRoot(),$correspondance); } print "\n"; my $racine=$tree->GetRoot(); my @children=$racine->GetChildrenList(); # EN DEVELOPPEMENT: NANOVA # { # my $mat; # print "TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT\n"; # $mat=ALTree::Nanova::Tree2mat($tree->GetRoot()); # ALTree::Nanova::WriteMat($mat); # my $values = []; # my $groups = []; # my $nb_term=0; # ALTree::Nanova::FillTableaux($tree->GetRoot(), $values, $groups, $nb_term); # print "Values:\n"; # foreach my $val (@{$values}) { # print $val, "\t"; # } # print "\n"; # print "Groups:\n"; # foreach my $group (@{$groups}) { # print $group, "\t"; # } # print "\n"; # print "*********\n"; # my $una_results; # $una_results = NAnova::UnbalancedNestedANOVA($mat, $groups, $values); # my $i=1; # foreach my $res (@{$una_results}) { # print "Level $i\tF=",$res->{"F"}, "\tp-value=",$res->{"p_value"}, "\n"; # $i++; # } # } # print "TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT\n"; $option_require->("permutations", "The number of permutations used to calculate". " exact p-values must be specified or set to 0\n"); my $permutation=$option_value->("permutations"); my($sign_util); if ($permutation==0) { #TODO, passer quanti my($seuil_chi2)=$option_value->("chi2-threshold", 0.01, "Using default chi2 threshold 0.01"); ALTree::Chi2::definition_p_chi2($seuil_chi2, 0.01); # mettre une option # pour seuil test_prop $sign_util = SignUtil::YES # on a besoin de la significativité } elsif ($permutation>0) { $sign_util = SignUtil::NO; # on n'a pas besoin de la sign } else { die "invalid value for the number of permutation: $permutation\n"; } print STDERR "Starting tree analysis\n"; if ($dataqual == DataQual::QUALI) { parcours_nosplit_chi2split(\@children, $prolonge, $splitmode, $racine, $sign_util); } else { ParcoursQuanti(\@children, $prolonge, $splitmode, $racine, $sign_util); } { print STDERR "Starting permutations\n"; if ($permutation==0) { if ($dataqual == DataQual::QUALI) { AffichageArbre($racine, \&TestInfos); } else { AffichageArbre($racine, \&InfosQuantiNoperm); } } elsif ($permutation>0) { my($value_per_line, $corrected_values); if ($dataqual == DataQual::QUALI) { AffichageArbre($racine, \&AssociationInfos); } else { AffichageArbre($racine, \&InfosQuanti); } ($value_per_line, $corrected_values)=RepeatAssociation ($tree, $dataqual, $correspondance, $prolonge,$permutation); print "\n"; print "p_val for each level:\n"; my($i); for ($i=0; $i<$value_per_line; $i++) { print "level ", $i+1, " p-value (non corrected) ", $corrected_values->{"chi2"}->[$i], "\n"; } print "corrected minimal p_value in the tree: ", $corrected_values->{"pmin"}, "\n";# at level TODO\n"; if ($nb_files>1) { $res_files[$file-1]=$corrected_values; #print STDERR "RRR", $res_files[$file-1]->{"distrib_pmin"}->[O], "\n"; } } else { die "invalid value for the number of permutation: $permutation\n"; } } } ########################################################### # Let's go. Et pour la localisation ########################################################### if ($s_loc==1) { #$option_require->("splitmode"); #my($splitmode)=$option_value->("splitmode"); print "Localisation method using S-character\n"; $option_require->("s-site-number"); $s_site_nb=$option_value->("s-site-number"); $option_require->("s-site-characters"); my($s_char_state)=$option_value->("s-site-characters"); $option_require->("co-evo"); my($co_evo_type)=$option_value->("co-evo"); # print "co_evo_type=$co_evo_type\n"; #DEBUG print "s_char_state=$s_char_state\n"; if (not ($s_char_state =~ m/([A-Za-z0-9]+)\s*[-=_]*[>]\s*([A-Za-z0-9]+)/)) { erreur("Invalid character change for character". " S. It should be Anc -> Der\n", 0); } my($s_anc)=$1; my($s_der)=$2; my($s_state)= ALTree::Sens->New($s_anc." --> ".$s_der); my($foret)=ALTree::Foret->New(); #$Data::Dumper::Indent = 0; for my $file_tree (@trees) { my $tree=$file_tree->{"tree"}; my ($b_t)=$tree->GetNbBrNonNulle(); # print "NB branches: $b_t\n"; my $site=$tree->GetSite($s_site_nb); if (not defined($site)) { erreur("Invalid value ($s_site_nb) for". " --s-site-number\n", 0); } my($s_t, $s_t_rev)=CalculateRit($tree, $s_site_nb, $s_state, $co_evo_type); CalculateEit($tree, $s_site_nb, $s_t, $s_t_rev, $b_t); $foret->AddTree($tree); $all_files_foret->AddTree($tree); } $foret->CalculVi(); #PrintAllVit($foret, $s_site_nb);# Non trié #PrintViMax($foret, $s_site_nb); # Affiche la liste en choisissant #pour chaque sit, juste le meilleur sens print "\n"; print "Results:\n"; PrintViMaxSens($foret, $s_site_nb); } } if ($association == 1) { if ($nb_files>1) { my $p_finale = TraiteSeveralFiles(\@res_files, $nb_files); print "\n############################################\n"; print "p_value for the $nb_files files = $p_finale\n"; } } if ($s_loc == 1) { if ($nb_files>1) { $all_files_foret->CalculVi(); print "\n############################################\n"; print "Results for all the files\n"; PrintViMaxSens($all_files_foret, $s_site_nb); } } } } sub PleinInfos { my $node=shift; my $suite=""; #"\nligne suivante\net encore après\n "; if (defined ($node->{"father"})) { return Name($node). "\nFrom: ". Name($node->{"father"}).$suite; } else { return Name($node).$suite; } } use FileHandle; use IPC::Open2; sub my_test { my $pid; $pid = open2(*Reader, *Writer, "phylip mix" ); print Writer "r\no\n6\nw\na\n5\ny\nweight\nr\n"; while () { print "PHYL: ", $_; } } #my_test; #exit 0; main; #man perlpod __END__ =head1 NAME altree - Association and Localisation tests using phylogenetic Trees =head1 SYNOPSIS altree [options] Options: --version program version --short-help|h brief help message --help help message with options descriptions --man full documentation --association|a perform the association test --s-localisation|l perform the localisation using the S character --first-input-file|i result_file from phylogeny reconstruction programs --second-input-file|j file containing the nb of cases/controls carrying an haplotype --output-file|o output_file --data-type|t DNA|SNP --data-qual|q qualitative|quantitative --outgroup outgroup_name --remove-outgroup --tree-building-program|p phylip|paup|paml --splitmode|s nosplit|chi2split --no-prolongation --chi2-threshold|n value --permutations|r number --number-of-trees-to-analyse number --tree-to-analyse number --s-site-number number --s-site-characters ancestral state -> derived state --co-evo|e simple|double --print-tree --anc-seq ancestral sequence (only with phylip) --nb-files number of input files to analyse (only for association test) =head1 OPTIONS =over 8 =item B<--version> Print the program version and exits. =item B<--short-help> Print a brief help message and exits. =item B<--help> Print a help message with options descriptions and exits. =item B<--man> Prints the manual page and exits. =item B<--association|a> Perform the association test =item B<--s-localisation|l> Localise the susceptibility locus using the "S-character method" =item B<--first-input-file|i> F Input file 1 (paup, phylip or paml results file). If several input files are analysed, their names must be separated by colons. Example: input1:input2 etc =item B<--second-input-file|j> F Input file 2, default F. The number of input file 2 must be the same as the number of input file 1. The name of the different input file 2 must be separated by colons =item B<--output-file|o> F Output file =item B<--data-type|t> C|C Type of data: DNA (ATGCU) or SNP (0-1) =item B<--data-qual|q> C|C Analyse qualitative (case/control) or quantitative data =item B<--outgroup> outgroup Root the tree with this outgroup =item B<--remove-outgroup> Remove the outgroup of the tree before performing the tests =item B<--tree-building-program|p> C|C|C Phylogeny reconstruction program =item B<--splitmode|s> C|C how tests are performed from a level to another =item B<--no-prolongation> No prolongation of branches in the tree =item B<--chi2-threshold|n> value Significance threshold for chi2 (default value 0.01) =item B<--permutations|r> number Number of permutations used to calculate exact p_values (Only for association test) =item B<--number-of-trees-to-analyse> number Number of trees to analyse in the localisation analysis (only for localisation method using S-character) =item B<--tree-to-analyse> number With this option, you can specify the tree to use (instead of random). Can be used several times to specify multiple trees. =item B<--s-site-number> number Number of the S character site in the sequence (only for localisation method using S-character) =item B<--s-site-characters> transition Character states for the S character: ancestral state -> derived state ex: G->C or 0->1 (only for localisation method using S-character) =item B<--co-evo|e> C|C Type of co-evolution indice simple: only the anc -> der transition of S is used double: the two possible transitions are used =item B<--print-tree> If this option is selected, the tree will be printed to the output =item B<--anc-seq> anc_seq With this option, you can specify the ancestral sequence. This option is only useful when the tree is reconstructed using the mix program of phylip with the ancestral states specified in the file "ancestors" =item B<--nb-files> number With this option, you specify the number of input files (1 and 2) to analyse This option only works for the association test. Be careful if the number of trees is not the same for the different input files: if the chosen tree doesn't exist in one file, the program wil not work correctly =back =head1 DESCRIPTION B performs (a) an association test between a candidate gene and disease or a quantitative trait (b) a localsation tests: it allows to detect which SNP is involved in the determinism of the disease or the quantitative trait These two tests are based on the analysis of haplotype phylogenetic trees. =cut ALTree-v1.3.2/progs/altree-add-S000077500000000000000000000360051412112337500163040ustar00rootroot00000000000000#!/usr/bin/perl #Ce programme etiquette les haplotypes malades (ajout d'un G) ou témoins (ajout d'un C), en fonction d'un seuil de malade et témoins qui le porte. #Le programme prend en entrée un fichier .paup, et redonne un autre .paup use strict; use diagnostics; use warnings; use Getopt::Long; # qw(:config permute); use Pod::Usage; #use Getopt::Std; our($opt_h,$opt_i, $opt_o, $opt_e, $opt_p, $opt_t, $opt_l, $opt_j, $opt_g, $opt_q); our $VERSION; $VERSION = sprintf "0.%03d", q$Revision: 427 $ =~ /(\d+)/g; sub DefineAncDer { my $data_type=shift; if ($data_type == 0) { my $tem=0; my $mal=1; return ($tem, $mal); } elsif ($data_type == 1) { my $tem="C"; my $mal="G"; return ($tem, $mal); } } sub ReadCorrespond { my($name_correspond) =shift; my $data_qual = shift; my($ligne, @tableau); my(%correspondance); open (CORRESP, '<', $name_correspond) || die "Unable to open file $name_correspond: $!\n"; while ($ligne=) { chomp($ligne); if ($ligne =~ /^$/) { next; } ####### Qualitative data ###### if ($data_qual eq "quali") { @tableau=split(/\s+/, $ligne); if ($#tableau != 2) { die "error in $name_correspond: not 3 columns at line '$ligne'\n"; } else { $tableau[2]=~ s/c//; $tableau[1]=~ s/m//; if ($tableau[1] =~ /c/ || $tableau[2] =~ /m/) { die "You have probably exchanged the order of cases and controls in file $name_correspond. It should be: haplo_name m_case_number c_control_number\n"; } $correspondance{$tableau[0]}->{"case"}=$tableau[1]+0; $correspondance{$tableau[0]}->{"control"}=$tableau[2]+0; } } else { ##### Quantitative data ####### @tableau = split(/\s+/, $ligne); my @quant_val = splice(@tableau, 1); $correspondance{$tableau[0]}=\@quant_val; } } #my($clefs); #DEBUG # foreach $clefs (keys %correspondance) { # print "$clefs case: ", $correspondance{$clefs}->{"case"}, "\n"; # print "$clefs, control: ",$correspondance{$clefs}->{"control"}, "\n"; # } return(\%correspondance); } sub calcul_moyenne_variance { my $correspondance = shift; my $somme=0; my $nb_val=0; my $somme_carres=0; foreach my $haplo (keys %{$correspondance}) { foreach my $elem (@{$correspondance->{$haplo}}) { $nb_val++; $somme+=$elem; $somme_carres+=$elem*$elem; } } my $moyenne = $somme/$nb_val; my $variance = $somme_carres/$nb_val-$moyenne*$moyenne; return ($moyenne, sqrt($variance)); } sub calcul_moyenne_nbind { my $tableau = shift; my $somme = 0; my $nb_ind=scalar(@{$tableau}); foreach my $elem (@{$tableau}) { $somme+=$elem; } return ($somme/$nb_ind, $nb_ind); } sub test_quanti_bilateral { my $moy_gen = shift; my $ec_type_gen = shift; my $moy_loc = shift; my $nb_ind_loc = shift; my $epsilon = shift; if ($moy_loc > ($moy_gen + $epsilon*$ec_type_gen/sqrt($nb_ind_loc))) { return "eleve"; } elsif ($moy_loc < ($moy_gen - $epsilon*$ec_type_gen/sqrt($nb_ind_loc))) { return "faible"; } else { return "?"; } } sub travail { my($seuil)=shift; my($data_type)=shift; my($proportion_malades)=shift; my $low =shift; my $name_correspond=shift; my $outgroup = shift; my $data_qual = shift; my($ligne); my($temoin, $malade, $sequence, $nom, $debut, $ancetre); my($anc, $num_car, $prop_mal, $prop_tem); my(@tableau, @tab2); my($tem, $mal)=DefineAncDer($data_type); my($correspondance)=ReadCorrespond($name_correspond,$data_qual); #foreach my $clefs (keys %{$correspondance}) { # print "$clefs case ", $correspondance->{$clefs}->{"case"}, "\n"; # print "$clefs, control ",$correspondance->{$clefs}->{"control"}, "\n"; # } my $found_outgroup=0; my $ici = 0; my $phylo_prog= "Phylip"; my $compteur=0; while ($ligne=){ chomp($ligne); if ($ligne =~/^$/) { next; } $compteur++; my $diese='#'; if ($ligne =~ /^\s*$diese[N|n]exus\s*$/) { $phylo_prog="PAUP"; } if ($phylo_prog eq "PAUP") { if ($ligne =~ /^\s*matrix\s*$/) { print $ligne, "\n"; $ici=1; next } if ($ligne =~ /^\s*;\s*$/) { $ici=0; } if ($ligne =~ /^\s*\[/) { next; } } else { if ($compteur>1) { $ici=1; } } if ($ici==0 && $phylo_prog eq "PAUP") { if ($ligne =~ /dimension ntax=([0-9]+)\s+nchar=([0-9]+);/) { $num_car=$2+1; print "dimension ntax=$1 nchar=", $num_car, ";\n"; }elsif ($ligne =~ /format symbols=\"([0-9ATGCU]+)\"/) { my($format)=$1; my($format_old)=$1; $format =~ tr/GC//d; $ligne =~ s/$format_old/${format}CG/; print $ligne, "\n"; } elsif ($ligne =~ /ancstates\s+\*anc\s+vector\s*=\s*([0-9ATCG]+)\s*;/) { $anc=$1; $anc=$anc."?"; $ligne =~ s/$1/$anc/; print $ligne,"\n"; } elsif ($ligne=~ /begin paup;/) { print $ligne,"\n"; print "exclude $num_car; \n"; } elsif ($ligne=~ /\s*describetrees/) { print "include $num_car;\n"; print $ligne,"\n"; } elsif ($ligne =~ /^\s*([0-9]+)\s+([0-9]+)$/) { $num_car=$2+1; print "$1\t$num_car\n"; } else { print $ligne, "\n"; } } elsif ($ici==0 && $phylo_prog eq "Phylip") { if ($ligne =~ /^\s*([0-9]+)\s+([0-9]+)\s*$/) { print $1, "\t", $2+1, "\n"; } else { die "Strange line $ligne in Phylip file\n"; } } elsif ($ici==1) { if ($ligne =~ /^\s+$/) { next; } elsif ($ligne =~ /^\s*\[.+\]$/) { # print STDERR "TTTTT\n"; next; } else { @tableau=split(/\s+/, $ligne); $sequence=$tableau[1]; $nom=$tableau[0]; #DEBUG print "$nom $outgroup\n"; if ($nom eq $outgroup){ # $ancetre=$sequence."?"; print "$nom $sequence?\n"; $found_outgroup++; next; } # } else { #if ($debut =~ /^\s*H[0-9]{3}_m[0-9]{3}_c[0-9]{3}/) { # @tab2=split(/_/,$debut); # print $tab2[0],"\n"; # $temoin=$tab2[2]; # $temoin =~ s/c//; # print STDERR "temoin=$temoin\n"; # $malade=$tab2[1]; # $malade =~ s/m//; # if ($malade =~ /c/ || $temoin =~ /m/) { # die "You have probably interverti cases and controls in file correspond.txt. It should be: haplo_name m_case_number c_control_number\n"; # } # if ($debut eq $anc_name){ # $found_anc++; # } #$nom=$tableau[0]; # print "$nom\n"; ###### QUALITATIVE ###### if ($data_qual eq "quali") { if (not exists ($correspondance->{$nom})){ print STDERR "$nom is not found in the file $name_correspond. Assuming it is the outgroup.\nThe number of cases and controls affected to this sequence is set to 0\n"; $correspondance->{$nom}->{"case"}=0; $correspondance->{$nom}->{"control"}=0; } $malade=$correspondance->{$nom}->{"case"}; $temoin=$correspondance->{$nom}->{"control"}; if ($malade == 0 && $temoin == 0) { print STDERR "$nom is carried by 0 cases and 0 controls. The state ? has been attributed to the S character\n"; $sequence.="?"; print "$nom ", $sequence, "\n"; next; } # print " $nom mal=$malade\n"; $prop_mal=$malade/($malade+$temoin); $prop_tem=$temoin/($malade+$temoin); # print "M=$malade T=$temoin\n"; #print "test=$test\n"; # if ($test==0) { # test: difference |mal-tem| >=seuil # if ($malade > $temoin && $malade-$temoin>=$seuil) { #$sequence.="G"; # } elsif ($malade < $temoin && $temoin-$malade>=$seuil) { # $sequence.="C"; # } else { # $sequence.="?"; # } #} elsif ($test==1) { # if ($malade+$temoin==1) { #$sequence.="?"; if ( $malade+$temoin <= $low) { $sequence.="?"; } else { if ($prop_mal>$proportion_malades+ $seuil*sqrt($prop_mal*$prop_tem/($malade+$temoin))) { $sequence.=$mal; } elsif ($prop_mal<$proportion_malades- $seuil*sqrt($prop_mal*$prop_tem/($malade+$temoin))) { $sequence.=$tem; } else { $sequence.="?"; } #} } print "$nom ", $sequence, "\n"; #"_m$malade", "_c$temoin\t", $sequence, "\n"; } else { ###### QUANTITATIVE ####### if (not exists ($correspondance->{$nom})){ print STDERR "$nom is not found in the file". "$name_correspond\n"; } my ($moyenne_gen, $ec_type) = calcul_moyenne_variance ($correspondance); my ($moyenne_loc, $nb_ind)= calcul_moyenne_nbind ($correspondance->{$nom}); #DEBUG print "$nom\n"; #DEBUG print "Moyenne: $moyenne_gen\n"; #DEBUG print "Variance: $ec_type\n"; #DEBUG print "Moyenne locale: $moyenne_loc\n"; #DEBUG print "nb_ind: $nb_ind\n"; if ($nb_ind <= $low) { $sequence.="?"; } else { if (test_quanti_bilateral($moyenne_gen, $ec_type, $moyenne_loc, $nb_ind, $seuil) eq "eleve") { $sequence.=$mal; } elsif (test_quanti_bilateral($moyenne_gen, $ec_type, $moyenne_loc, $nb_ind, $seuil) eq "faible") { $sequence.=$tem; } else { $sequence.="?"; } } print "$nom ", $sequence, "\n"; } } } } #print "anc? $found_anc\n"; if ($found_outgroup==0 && $outgroup ne "nooutgroup") { die "outgroup not found in the file\n"; } elsif ($found_outgroup ==1 && $outgroup eq "noanc") { die " false outgroup found\n"; } elsif ($found_outgroup > 1) { die "Too many outgroups found ($found_outgroup outgroup)"; } } sub usage { my $msg =shift; my($progname) =shift; print STDERR "Error! ".$msg; print STDERR "usage :$progname [options]\n"; print STDERR " Options :\n"; print STDERR " [-h] this help\n"; print STDERR " -i input file\n"; print STDERR " -j input2 file (correspond.txt)\n"; print STDERR " -o output file\n"; print STDERR " -t data type: SNP or DNA\n"; # ancienne option -t test: 0= mal-tem>seuil 1= seuil proportion0+/-sqr(pq/n)] print STDERR " -p proportion of cases in the whole data set\n"; print STDERR " -e epsilon parameter\n"; print STDERR " -q quantitative or qualitative data\n"; print STDERR " [-g] name of the outgroup\n"; print STDERR " -l if an haplotype is present equal or less than -l times, the state of S will be set to ?\n"; } sub main { my($progname); my($seuil, $test, $proportion); my %options= ( "first-input-file" => \$opt_i, "second-input-file" => \$opt_j, "output-file" => \$opt_o, "epsilon" => \$opt_e, "data-type" => \$opt_t, "proportion" => \$opt_p, "outgroup" => \$opt_g, "low" => \$opt_l, "data-qual" => \$opt_q, ); #getopts('ho:i:j:e:t:p:l'); GetOptions (\%options, "version", "short-help|h", "help", "man", "first-input-file|i=s", "second-input-file|j=s", "output-file|o=s", "epsilon|e=s", "data-type|t=s", "proportion|p=s", "outgroup|g=s", "low|l=i", "data-qual|q=s", ) or pod2usage(2); if (defined($options{"version"})) { print $0, " version ", $VERSION, "\n"; print "(Perl version ", $], ")\n"; exit 0; } if (defined($options{"short-help"})) { pod2usage(-exitstatus => 0, -verbose => 0); } if (defined($options{"help"})) { pod2usage(-exitstatus => 0, -verbose => 1); } if (defined($options{"man"})) { pod2usage(-exitstatus => 0, -verbose => 2); } if ($opt_i) { open(STDIN, '<', $opt_i) or die "Impossible to open $opt_i : $!" ; } my $correspond_name; if ($opt_j) { $correspond_name=$opt_j; } else { $correspond_name="correspond.txt" } if ($opt_o) { open(STDOUT, '>', $opt_o) or die "Impossible to open $opt_o : $!" ; } if ($opt_e) { $seuil=$opt_e; } else { usage("The epsilon parameter is not defined!!\n", $progname); } my($data_type); if (defined($opt_t)) { if ($opt_t =~ /[Dd][Nn][Aa]/) { $data_type=1; } elsif ($opt_t =~ /[Ss][Nn][Ps]/) { $data_type=0; } else { usage("The data type (SNP or DNA) is missing\n", $progname); } # if (defined($opt_t)) { # if ($opt_t==0) { # $test=0; # } elsif ($opt_t==1) { # $test=1; # } else { # $test=-999; # print STDERR "illegal value of opt_t\n"; # } # } else { # die "manque le numero du test: 0: mal-tem=seuil 1: seuil=P0+/-sqr(pq/n)!!\n"; # } my($low); # Si $low !=0, if only one case or one control, then the state of S is ? if (not defined $opt_l) { die "The minimum number of haplotype should be set by -l\n"; } else { $low=$opt_l; } my $data_qual; if (!$opt_q) { die "data-qual must be specified\n"; } elsif ($opt_q eq "qualitative") { $data_qual="quali"; } elsif ($opt_q eq "quantitative") { $data_qual="quanti"; } else { die "Invalid value for data-qual (opt_q)\n"; } if ($data_qual eq "quali") { if ($opt_p) { $proportion=$opt_p; } else { usage("The proportion of cases in the sample is missing!\n", $progname); } } my $outgroup="nooutgroup"; if ($opt_g) { $outgroup = $opt_g; } travail($seuil, $data_type, $proportion, $low, $correspond_name, $outgroup, $data_qual); } } main; __END__ =head1 NAME altree-add-S - Title... =head1 SYNOPSIS altree-add-S [options] Options: --version program version --short-help|h brief help message --help help message with options descriptions --man full documentation --first-input-file|i input file 1 --second-input-file|j input file 2 data concerning the trait (qualitative or quantitative) --output-file|o output file --epsilon|e epsilon value --data-type|t data type: SNP or DNA --proportion|p proportion of cases in the sample (for qualitative data only) --data-qual|q data type: qualitative or quantitative [--outgroup|g] name of the outgroup --low|l if an haplotype is present equal or less than -l times, the state of S will be set to "?" =head1 OPTIONS =over 8 =item B<--version> Print the program version and exits. =item B<--short-help> Print a brief help message and exits. =item B<--help> Print a help message with options descriptions and exits. =item B<--man> Prints the manual page and exits. =item B<--first-input-file|i> Input file 1 (paup or phylip file) =item B<--second-input-file|j> Input file 2, contains the number of times a given haplotypes is carried by case and control individuals (qualitative data) or the quantitative values correqsponding to a givent haplotype (quantitative data) =item B<--output-file|o> Output file =item B<--epsilon|e> espilon parameter (see formula in the documentation) =item B<--data-type|t> Type of data: DNA (ATGCU) or SNP (0-1) =item B<--proportion|p> Proportion of case individuals in the sample =item B<--outgroup|g> Name of the outgroup (if it is not in the file containing the number of cases and controls per haplotype) =item B<--data-qual|q> Specify if the data are qualitative or quantitative =item B<--low|l> if an haplotype is present equal or less than -l times, the state of S will be set to "?" =back =head1 DESCRIPTION B adds a new character (called "character S") to each haplotype in the input file according to the number of cases and controls carrying it. =cut ALTree-v1.3.2/progs/altree-convert000077500000000000000000000544221412112337500170370ustar00rootroot00000000000000#! /usr/bin/perl # This program trasforms output files from different haplotype reconstructions programs (Phase, FAMHAP, ...) into input files for phylogeny reconstruction programs (PAUP or Phylip) use strict; use diagnostics; use warnings; use Getopt::Long; # qw(:config permute); use Pod::Usage; #use Getopt::Std; our($opt_h, $opt_r, $opt_i, $opt_j, $opt_o, $opt_t, $opt_p, $opt_c, $opt_q, $opt_s); our $VERSION; $VERSION = sprintf "0.%03d", q$Revision: 290 $ =~ /(\d+)/g; ##### FONCTIONS ANNEXES GLOBALES POUR TOUS LES INPUTS #### sub print_hash_ind { my($hash_ind)=shift; my($clef); print "AFFICHAGE\n"; foreach $clef (keys %{$hash_ind}) { print $clef ," ", $hash_ind->{$clef}->{"statut"}, " ", $hash_ind->{$clef}->{"haplo1"}, " ", $hash_ind->{$clef}->{"haplo2"}, "\n"; } } #Verification that # - the hash contains 2 haplo per individual # - the statut is defined sub VerifyHashInd { my($hash_ind)=shift; my($nb_loci)=shift; my($ind); foreach $ind (keys %{$hash_ind}) { if ((!exists $hash_ind->{$ind}->{"statut"}) && (!$opt_j)) { die "Statut are not available in the input file: You should either provide a second input file (option -j ) or add it in the input file of phase and use the -c-1 option of phase"; } elsif ((!exists $hash_ind->{$ind}->{"haplo1"}) || (!exists $hash_ind->{$ind}->{"haplo2"})) { die "Undefined haplotypes for individual $ind\n"; } elsif ((length($hash_ind->{$ind}->{"haplo1"}) != $nb_loci) || (length($hash_ind->{$ind}->{"haplo2"}) != $nb_loci)) { my($long)=length($hash_ind->{$ind}->{"haplo1"}); die "$nb_loci, $long, Bad haplotype sequence length for individual: $ind\n"; } } } ############################ ##### READ PHASE OUTPUT ##### #Read information in the phase outfile (option -c) #The info are stored in a hash{num_ind}->{"info"} # (info=statut[if available], haplo1, haplo2) sub ReadPhase { my($file)=shift; # Do we have to read statut in INPUT1 or not (use INPUT2)? my($read_statut)=shift; my($mark)=0; my(%hash_ind); my($passe_par_la)=0; #indicates if a section is read in the input file my($ligne, $nb_loci); my($file_has_statut)=0; #=1 when we are sure that info about statut are in the file open(INPUT1, '<', $file) || die "Unable to open '$file': $!\n"; while ($ligne=) { chomp($ligne); if ($ligne =~ /^BEGIN (OUTFILE_LIST|BESTPAIRS1|INPUT_SUMMARY)$/) { if ($mark != 0) { die "Nested sections ! \n"; } if ($1 eq "OUTFILE_LIST") { $mark=2; } elsif ($1 eq "INPUT_SUMMARY") { $mark=3; } else { $mark=1; } if ($passe_par_la & (1<<($mark-1)) ) { die "Double section 'BEGIN $1' !\n"; } $passe_par_la |= (1<<($mark-1)); next; } if ($ligne =~ /^END (OUTFILE_LIST|BESTPAIRS1|INPUT_SUMMARY)$/) { if ($mark == 0) { die "Section $1 ends before start ! \n"; } $mark=0; next; } if ($mark==1) { my ($ligne2, $ligne3, $statut, $ind); if ($ligne !~ /^([01])\s+([0-9A-Za-z\#_-]+)$/) { print STDERR "Skipping strange line : $ligne\n"; } else { $statut=$1; $ind=$2; my $i; for ($i=1; $i<=2; $i++) { $ligne2=; chomp($ligne2); $ligne2 =~ tr/()[] //d; # faire aussi un s/(-1)/?/; $ligne2 =~ s/-1/?/g; $hash_ind{$ind}->{"haplo".$i}=$ligne2; } if ($read_statut) { $hash_ind{$ind}->{"statut"}=$statut; } } } if ($mark==2) { if ($ligne =~ / : p-value for testing cases vs controls$/) { $file_has_statut=1; } } if ($mark==3){ if ($ligne =~ /^Number of Loci: ([0-9]+)$/) { $nb_loci=$1; } } } close(INPUT1); if ($passe_par_la != 7) { print "PASSE PAR LA=$passe_par_la \n"; die "The program has either read too many sections or not enough!\n"; } if ($file_has_statut == 0 && $read_statut == 1) { die "Statut are not available in the input file: You should either provide a second input file (option -j ) or add it in the input file of phase and use the -c-1 option of phase" } if (%hash_ind) { #not empty return \%hash_ind, $nb_loci; } else { die "Error in reading Input 1: info have not been stored correctly in the hash. Check your input file?\n"; } } #To add statut info in the hash when it's not available in INPUT1 sub ReadStatut { my ($file)=shift; my ($hash_ind)=shift; my(@tableau, $ligne); open(INPUT2, '<', $file) || die "Unable to open '$file': $!\n"; while ($ligne=) { chomp($ligne); @tableau=split(/\s+/, $ligne); if (!exists($hash_ind->{$tableau[0]})) { die "This individual doesn't exist in $opt_i: $tableau[0] !\n"; } $hash_ind->{$tableau[0]}->{"statut"}=$tableau[1]; } close(INPUT2); my($ind); foreach $ind (keys %{$hash_ind}) { if (!exists($hash_ind->{$tableau[0]}->{"statut"})) { die "No statut was found for individual $ind !\n"; } } } ########################################## #### READ FAMHAP OUTPUT ################## #Read information in the FAMHAP outfile ( outfile=file1) #The info are stored in a hash{haploID}=haplotype_sequence sub ReadFAMHAPOutfile { my($file1)=shift; my($ligne, , $ligne2, @tableau, %hashHaploID); my($haplo, $HaploID); my($nb_loci, $nb_haplo); open(FAMHAPOUT, '<', $file1) || die "Unable to open '$file1': $!\n"; while ($ligne=) { chomp($ligne); if ($ligne =~ /^Selected loci:/) { chomp($ligne); @tableau=split(/\s+/, $ligne); $nb_loci=$#tableau-1; } if ($ligne =~ /HaploiD: ([0-9]+)/) { $HaploID=$1; @tableau=split(/\s+/, $ligne); $haplo=""; my($i); if (not defined $nb_loci) { die "Problem in the input file: nb_loci could not be read: $nb_loci\n"; } else { for ($i=0; $i<$nb_loci; $i++) { $haplo.=$tableau[$i]; # Je ne vérifie pas que les alleles font bien un seul # caractère (une seuk chiffre ou une seule lettre... } } #hash dont clef=HaploID, et valeur = la seq de l'haplotype if ($HaploID ne "") { $hashHaploID{$HaploID}=$haplo; #DEBUG print "haplo=$haplo, hashHaploID=$HaploID hashHaploID{haplo}= $hashHaploID{$HaploID}\n"; } else { die "Problem in the input file, HaploID could not be correctly read: $HaploID\n"; } } } close(FAMHAPOUT); return (\%hashHaploID, $nb_loci); } #Read information in the FAMHAP Hx_MOSTLIKELI (file2) #uses the hashHaploID sub ReadFAMHAPMostLikeli { my($file2)=shift; my($hashHaploID)=shift; my($ligne, $FT, $FID, $FNT, $MT, $MNT); my(%hash_ind); open(OUTHAPLO, '<', $file2) || die "Unable to open '$file2': $!\n"; my($index)=0; while ($ligne=) { chomp($ligne); if ($ligne =~ /^\s*FID\s+PID\s+HAPLO1\s+HAPLO2\s+HAPLO3\s+HAPLO4\s+LIKELIHOOD_WEIGHT/) { $index=1; next; } if ($index==1) { if ($ligne =~ /^\s*(\d+)\s+(.+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(.+)/) { $FID=$1; $FT=$3; $FNT=$4; $MT=$5; $MNT=$6; # print "hashHaploID3= $hashHaploID->{$3}\n"; $hash_ind{$FID."0"}->{"haplo1"}=$hashHaploID->{$FNT}; $hash_ind{$FID."0"}->{"haplo2"}=$hashHaploID->{$MNT}; $hash_ind{$FID."0"}->{"statut"}=0; $hash_ind{$FID."1"}->{"haplo1"}=$hashHaploID->{$FT}; $hash_ind{$FID."1"}->{"haplo2"}=$hashHaploID->{$MT}; $hash_ind{$FID."1"}->{"statut"}=1; } elsif ($ligne =~ /^$/) { next; } else { print "strange line $ligne\n"; } } } close(OUTHAPLO); return(\%hash_ind); } # call the different function involved in the reading of FAMHAP input file and storage of the infoin a hash{num_ind}->{"info"} (info=statut[if available], haplo1, haplo2) sub ReadFAMHAP { my($file1)=shift; my($file2)=shift; my($hashHaploID, $hash_ind); my($haplo); my($nb_loci); ($hashHaploID, $nb_loci)=ReadFAMHAPOutfile($file1); ($hash_ind)= ReadFAMHAPMostLikeli($file2, $hashHaploID); #print "nb_haplo= $nb_haplo, nb_loci=$nb_loci\n"; # foreach $haplo (keys %{$hashHaploID}) { # print "haplo: $haplo hash=$hashHaploID->{$haplo}\n"; # } # print_hash_ind($hash_ind); return($hash_ind, $nb_loci); } ########################################## #### DATA TRANSFO ######################## sub TransfoData { my($hash_ind)=shift; my($data_quali)=shift; my($j)=1; my($ind, %hash_haplo); foreach $ind (keys %{$hash_ind}) { if ($data_quali eq "quali") { if (($hash_ind->{$ind}->{"statut"} != 0) && ($hash_ind->{$ind}->{"statut"} !=1)) { die "Invalid disease statut for individual $ind: ", $hash_ind->{$ind}->{"statut"}, "\n"; } else { my($i); for ($i=1; $i<=2; $i++) { $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[$hash_ind->{$ind}->{"statut"}]++; $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[0]+=0; # moche mais pour eviter les non défini dans affichage $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[1]+=0; if (!exists $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[2]) { $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[2]=$j; $j++; } } } } else { # In this case, $hash_haplo is a hash with $haplo as keys and a # ref on a tab containing the quantitative values as values. for (my $i=1; $i<=2; $i++) { push (@{$hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->{"valeurs"}}, $hash_ind->{$ind}->{"statut"}); if (!exists $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->{"name"}) { $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->{"name"}=$j; $j++; } } } } my($nb_haplo); $nb_haplo=keys %hash_haplo; # print "Nb_haplo= $nb_haplo\n"; return \%hash_haplo, $nb_haplo; } ########################################### #### BUILDING OF DIFFERENT OUTPUT FILE #### #Affiche juste les haplo. Surtout pour debug sub AfficheHashHaplo { my($hash_haplo)=shift; my($haplo); foreach $haplo (keys %{$hash_haplo}) { printf "H%.3i_c%.3i_m%.3i\t%s\n", $hash_haplo->{$haplo}->[2],$hash_haplo->{$haplo}->[0], $hash_haplo->{$haplo}->[1], $haplo; # print "hash_haplo->{$haplo}->[1]", $hash_haplo->{$haplo}->[1], "\n"; } } # Prepare a file (correspond.txt) in which the number of cases and the number of controls are specified for each haplotype. sub MakeCorrespondanceFile { my($hash_haplo)=shift; my($file_corres)=shift; my $data_quali = shift; my $seuil = shift; my($haplo); open (CORRESP, '>', $file_corres) || die "Unable to open correspond.txt: $!\n"; my $hash_haplo_sorted; # ref on tab containing the haplotypes sorted on the number of individuals carrying them if ($data_quali eq "quali") { $hash_haplo_sorted = SortNbhaploQuali($hash_haplo, $seuil); } else { $hash_haplo_sorted = SortNbhaploQuanti($hash_haplo, $seuil); } # foreach $haplo (keys %{$hash_haplo}) { foreach $haplo (@{$hash_haplo_sorted}) { #new version with sorted sequences if ($data_quali eq "quali") { printf CORRESP "H%.3i\tm%.3i\tc%.3i\n", $hash_haplo->{$haplo}->[2],$hash_haplo->{$haplo}->[1], $hash_haplo->{$haplo}->[0]; } else { printf CORRESP "H%.3i\t", $hash_haplo->{$haplo}->{"name"}; foreach my $valeurs (@{$hash_haplo->{$haplo}->{"valeurs"}}) { print CORRESP "$valeurs\t"; } print CORRESP "\n"; } } close(CORRESP); } # Select and sort the haplotypes that will appear in the paup file and in the correspondance file. Does not work with phylip yet sub SortNbhaploQuali { my $hash_haplo = shift; my $seuil = shift; my @hash_haplo_sorted = sort { $hash_haplo->{$a}->[0]+$hash_haplo->{$a}->[1] <=> $hash_haplo->{$b}->[0]+$hash_haplo->{$b}->[1] } (grep { $hash_haplo->{$_}->[0]+$hash_haplo->{$_}->[1]>$seuil } (keys %{$hash_haplo})); return \@hash_haplo_sorted; } sub SortNbhaploQuanti { my $hash_haplo = shift; my $seuil =shift; my @hash_haplo_sorted = sort { $#$hash_haplo->{$a}->{"valeurs"} <=> $#$hash_haplo->{$b}->{"valeurs"} } (grep { $hash_haplo->{$_}->[0]+$hash_haplo->{$_}->[1]>$seuil } (keys %{$hash_haplo})); return \@hash_haplo_sorted; } # Read the opt_t and define the character to add to the ancestral sequence ($anc) and to the other haplotypes ($der). Also define the "format symbol for paup. sub ReadDataType { my($data_type)=shift; # my ($der, $anc); my($write_data_type); if ($data_type eq "DNA") { $write_data_type="ATGCU"; # $anc="G"; # $der="C"; } elsif ($data_type eq "NUM") { $write_data_type="0123456789"; # $anc="1"; # $der="0"; } else { die "Invalid data type specified in opt_t: $opt_t. You should use DNA or NUM\n"; } return ($write_data_type); # return ($anc, $der, $write_data_type); } #Build a PAUP OUTFILE sub BuildPAUP { my($file)=shift; my($hash_haplo)=shift; my($nb_haplo)=shift; my($nb_loci)=shift; my($data_type)=shift; my($file_corres)= shift; my $data_quali=shift; my $seuil = shift; #my($der, $anc); my($write_data_type); MakeCorrespondanceFile($hash_haplo, $file_corres, $data_quali, $seuil); #($anc, $der, $write_data_type)=ReadDataType($data_type); ($write_data_type)=ReadDataType($data_type); my $hash_haplo_sorted; if ($data_quali eq "quali") { $hash_haplo_sorted = SortNbhaploQuali($hash_haplo, $seuil); } else { $hash_haplo_sorted = SortNbhaploQuanti($hash_haplo, $seuil); } open(OUTPAUP, '>', $file) || die "Unable to open '$file': $!\n"; print OUTPAUP "#Nexus\n"; print OUTPAUP "Begin data;\n"; print OUTPAUP "dimension ntax=",$#$hash_haplo_sorted+1," nchar=", $nb_loci,";\n"; print OUTPAUP "format symbols=\"$write_data_type\" missing=?;\n"; print OUTPAUP "matrix\n"; my($haplo); # foreach $haplo (keys %{$hash_haplo}) { # printf OUTPAUP "H%.3i_m%.3i_c%.3i\t%s%s\n", $hash_haplo->{$haplo}->[2],$hash_haplo->{$haplo}->[1], $hash_haplo->{$haplo}->[0], $haplo, $der; # a modifier si je fais un deuxième fichier de sortie... foreach $haplo (@{$hash_haplo_sorted}) { if ($data_quali eq "quali") { printf OUTPAUP "H%.3i\t%s\n", $hash_haplo->{$haplo}->[2], $haplo;#, $der; } else { printf OUTPAUP "H%.3i\t%s\n", $hash_haplo->{$haplo}->{"name"}, $haplo; } } print OUTPAUP "H000_ancetre [add ancestral haplotype]\n";#$anc\n"; print OUTPAUP ";\n"; print OUTPAUP "end;\n"; print OUTPAUP "begin assumptions;\n"; print OUTPAUP "ancstates *anc vector = [add ancestral haplotype];\n"; print OUTPAUP "end;\n"; print OUTPAUP "begin paup;\n"; print OUTPAUP "set nowarnreset autoclose maxtrees = [2000] increase=[no - Auto AutoInc = 100] monitor = no taxlabels = full\n"; print OUTPAUP "root=lundberg warnroot=no opt=[deltran - acctran] ancstates=anc;\n"; print OUTPAUP "hsearch;\n"; print OUTPAUP "savetrees [from=1 to=1] file=[test.tree] root=yes format=altnexus;\n"; print OUTPAUP "cleartrees nowarn=yes;\n"; print OUTPAUP "gettrees rooted=yes file=[test.tree];\n"; print OUTPAUP "log file = [test.res.log] replace=[yes - no];\n"; print OUTPAUP "describetrees [all] /plot=[cladogram - phylogram] brlens=yes rootmethod=lundberg apolist=yes;\n"; print OUTPAUP "log stop;\n"; print OUTPAUP "end;\n"; print OUTPAUP "quit;\n"; print OUTPAUP "[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]\n"; close(OUTPAUP); } #Build a PHYLIP OUTFILE sub BuildPHYLIP { my ($file)=shift; my($hash_haplo)=shift; my($nb_haplo)=shift; my($nb_loci)=shift; my($data_type)=shift; my($file_corres)=shift; # my ($der, $anc); my($write_data_type); #### SI ON UTILISE PHYLIP? FAIRE UN TEST: on doit avoir du 0/1 ou du ATGCU... SInon, marche pas! MakeCorrespondanceFile($hash_haplo, $file_corres); # ($anc, $der, $write_data_type)=ReadDataType($data_type); ($write_data_type)=ReadDataType($data_type); open(OUTPHYLIP, '>', $file) || die "Unable to open '$file': $!\n"; print OUTPHYLIP "\t", $nb_haplo+1, "\t", $nb_loci+1, "\n"; my($haplo); foreach $haplo (keys %{$hash_haplo}) {#### SI ON UTILISE PHYLIP? FAIRE UN TEST: on doit avoir du 0/1 ou du ATGCU... SInon, marche pas! printf OUTPHYLIP "H%.3i%s\t%s\n", $hash_haplo->{$haplo}->[2]," ", $haplo;#, $der; } # print OUTPHYLIP "H000_anc ", "\t", "[ancestral sequence]\n";#$anc\n"; close(OUTPHYLIP); # print STDERR "Don't forget to prepare the ancestor file containing the ancestor sequence followed by the character $anc\n"; } ############################################ sub main { my($progname, $rec_program); my %options= ( "first-input-file" => \$opt_i, "second-input-file" => \$opt_j, "output-file" => \$opt_o, "case-control-output" => \$opt_c, "data-type" => \$opt_t, "phylo-prog" => \$opt_p, "reconstruct-prog" => \$opt_r, "data-quali" => \$opt_q, "nbind-threshold" => \$opt_s, ); #getopts('hr:i:j:o:t:p:'); GetOptions (\%options, "version", "short-help|h", "help", "man", "first-input-file|i=s", "second-input-file|j=s", "output-file|o=s", "case-control-output|c=s", "data-type|t=s", "phylo-prog|p=s", "reconstruct-prog|r=s", "data-quali|q=s", "nbind-threshold|s=i", ) or pod2usage(2); if (defined($options{"version"})) { print $0, " version ", $VERSION, "\n"; print "(Perl version ", $], ")\n"; exit 0; } if (defined($options{"short-help"})) { pod2usage(-exitstatus => 0, -verbose => 0); } if (defined($options{"help"})) { pod2usage(-exitstatus => 0, -verbose => 1); } if (defined($options{"man"})) { pod2usage(-exitstatus => 0, -verbose => 2); } # if ($opt_h) { # ($progname = $0) =~ s|^.*/([^/]*)$|$1|; # print STDERR "usage : $progname \n"; # print STDERR "\t-r Haplotype reconstruction program\n"; # print STDERR "\t-i Input file 1\n"; # print STDERR "\t[-j Input file 2]\n"; # print STDERR "\t-o Output file \n"; # print STDERR "\t-t Type of data: DNA (ATGCU) or NUM (0-9)\n"; # print STDERR "\t-p Phylogeny reconstruction program\n"; # print STDERR "\t-h: this help\n"; # exit (1); # } if ($opt_r){ $rec_program = $opt_r; } else { die "Name of the haplotype reconstruction program used missing: opt_r\n"; } if (!$opt_i) { # Principal outfile of haplotypic reconstruction program die "No input file\n"; } if (!$opt_o) { # Output file for a phylogeny reconstruction program die "No output file\n"; } if (!$opt_c) { # Output file for a phylogeny reconstruction program die "No case-control statut output file\n"; } my($phylo_program); if ($opt_p){ $phylo_program = $opt_p; } else { die "Name of the phylogeny reconstruction program used missing: opt_p\n"; } if (!$opt_t){ die "Type of data: opt_t (DNA or NUM) not specified!\n"; #il faudra peut-etre vérifier que les données sont bien du bon type??? } my $data_quali; if (! $opt_q){ die "Data quality: opt_q, (qualitative or quantitative) not specified!\n"; } if (not defined $opt_s){ die "Nb ind threshold: opt_s not specified!\n"; } my($hash_ind, $hash_statut, $hash_haplo); my($nb_haplo, $nb_loci); if ($rec_program =~ /^[Pp][Hh][Aa][Ss][Ee]$/) { ($hash_ind, $nb_loci)=ReadPhase($opt_i, !$opt_j); VerifyHashInd($hash_ind, $nb_loci); if ($opt_j) { ReadStatut($opt_j, $hash_ind); } } elsif ($rec_program =~ /^[Ff][Aa][Mm][Hh][Aa][Pp]$/) { if (!$opt_j) { die "No file H1_MOSTLIKELI or H0_MOSTLIKELI provided\n"; } else { ($hash_ind, $nb_loci)=ReadFAMHAP($opt_i, $opt_j); VerifyHashInd($hash_ind, $nb_loci); } } else { die "Unknown software. Check the -r option! \n"; } if ($opt_q =~ /^[Qq][Uu][Aa][Ll][Ii][Tt][Aa][Tt][Ii][Vv][Ee]$/) { $data_quali="quali"; } elsif ($opt_q =~ /^[Qq][Uu][Aa][Nn][Tt][Ii][Tt][Aa][Tt][Ii][Vv][Ee]$/) { $data_quali="quanti"; } else { die "Unknown data_qual. Check the -q option! \n"; } #print_hash_ind($hash_ind); ($hash_haplo, $nb_haplo)=TransfoData($hash_ind, $data_quali); # AfficheHashHaplo($hash_haplo); # pour verifier if ($phylo_program =~ /^[Pp][Aa][Uu][Pp]$/) { BuildPAUP($opt_o, $hash_haplo, $nb_haplo, $nb_loci, $opt_t, $opt_c, $data_quali, $opt_s) } elsif ($phylo_program =~ /^[Pp][Hh][Yy][Ll][Ii][Pp]$/) { BuildPHYLIP($opt_o, $hash_haplo, $nb_haplo, $nb_loci, $opt_t, $opt_c); } else { die "Unknown phylogeny software. Check the -p option! \n"; } } main; __END__ =head1 NAME altree-convert - Title... =head1 SYNOPSIS altree-convert [options] Options: --version program version --short-help|h brief help message --help help message with options descriptions --man full documentation --first-input-file|i input file 1 --second-input-file|j input file 2 (not mandatory) --output-file|o output file --case-control-output|c output containing the nb cases/controls --data-type|t DNA|NUM --phylo-prog|p PAUP|PHYLIP --reconstruct-prog|r PHASE|FAMHAP --data-quali|q Type of data: qualitative or quantitative --nbind-threshold|s Minimum number of individuals ecquired to keep an haplotype =head1 OPTIONS =over 8 =item B<--version> Print the program version and exits. =item B<--short-help> Print a brief help message and exits. =item B<--help> Print a help message with options descriptions and exits. =item B<--man> Prints the manual page and exits. =item B<--first-input-file|i> Input file 1 (output of the haplotype reconstruction program) =item B<--second-input-file|j> Input file 2 (second output of famhap or file containig the disease status) =item B<--output-file|o> Output file =item B<--case-control-output|c> Output file containing the number of cases and controls carrying each haplotype =item B<--data-type|t> C|C Type of data: DNA (ATGCU) or SNP (0-1) =item B<--phylo-prog|p> C|C Phylogeny reconstruction program =item B C Haplotype reconstruction program =item B C Type of data analyzed =item B Minimal number of individuals carrying an haplotype recquired to keep it for further analysis. If you want to keep all haplotypes, you must affect 0 to this variable =back =head1 DESCRIPTION B will read the given input file(s) and generate an input file for the phylogenetic reconstruction software paup or phylip/paml =cut ALTree-v1.3.2/t/000077500000000000000000000000001412112337500132615ustar00rootroot00000000000000ALTree-v1.3.2/t/ALTree.t000066400000000000000000000007261412112337500145670ustar00rootroot00000000000000# Before `make install' is performed this script should be runnable with # `make test'. After `make install' it should work as `perl ALTree.t' ######################### # change 'tests => 1' to 'tests => last_test_to_print'; use Test::More tests => 1; BEGIN { use_ok('ALTree::Import') }; ######################### # Insert your test code below, the Test::More module is use()ed here so read # its man page ( perldoc Test::More ) for help writing this test script. ALTree-v1.3.2/test/000077500000000000000000000000001412112337500137755ustar00rootroot00000000000000ALTree-v1.3.2/test/create_file/000077500000000000000000000000001412112337500162375ustar00rootroot00000000000000ALTree-v1.3.2/test/create_file/paup_file/000077500000000000000000000000001412112337500202035ustar00rootroot00000000000000ALTree-v1.3.2/test/create_file/paup_file/caco.phase000066400000000000000000000143441412112337500221400ustar00rootroot00000000000000200 12 P 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760 SSSSSSSSSSSS 1 1 222222222222 222222222222 1 2 222222222222 222222222222 1 3 222222222222 112221111121 1 4 222222222222 222212222222 1 5 222221111122 112221111112 1 6 222222222222 222222222222 1 7 222222222222 112221112112 1 8 222222222222 222222222222 1 9 112221111112 222222222222 1 10 112221111112 222222222222 1 11 112221111112 112221112112 1 12 112221111112 222222222222 1 13 222222222222 112222222222 1 14 112221111112 222222222222 1 15 222221122222 222222222222 1 16 112221111112 112222222222 1 17 112222222222 222222222222 1 18 222222222222 222222222222 1 19 222222222222 112222222222 1 20 222222222222 222212222222 1 21 112221112222 112222222222 1 22 222221111121 112221111112 1 23 222221111121 222222222222 1 24 112221111112 222212222222 1 25 112221111112 222222222222 1 26 222222222222 112221111112 1 27 222222222222 112221112112 1 28 222222222222 222222222222 1 29 112221111122 222222222222 1 30 222222222222 112221112222 1 31 222221111122 222222222222 1 32 221122222222 112222222222 1 33 112221111112 222222222222 1 34 222222222222 112221111112 1 35 112221112112 112221111122 1 36 222222222222 222222222222 1 37 112221111121 222222222222 1 38 112221111122 222222222222 1 39 222222222222 222221111122 1 40 221222222221 112221111112 1 41 222222222222 222222222222 1 42 221222222221 222222222222 1 43 112221112112 222221111121 1 44 222222222222 222222222222 1 45 112221112112 222222222222 1 46 222222222222 112222222222 1 47 112221111121 112221111121 1 48 222222222222 222222222222 1 49 112221111112 222222222222 1 50 222222222222 112221111112 1 51 222222222222 221122222222 1 52 222222222222 112221111121 1 53 222222222222 222222222222 1 54 222222222222 222221111121 1 55 222222222222 112221111112 1 56 112221112222 222222222222 1 57 221222222221 112221111112 1 58 222221111122 112221111122 1 59 222221122222 112221112222 1 60 222222222222 112221112112 1 61 222222222222 222222222222 1 62 222222222222 222212222222 1 63 222222222222 222222222222 1 64 222221111112 112222222222 1 65 222222222222 222222222222 1 66 221222222221 222221111121 1 67 112222222222 222222222222 1 68 222222222222 112221111112 1 69 222222222222 222222222222 1 70 112221111121 112221111112 1 71 222222222222 221222222221 1 72 222222222222 222212222222 1 73 222222222222 222222222222 1 74 222222222222 222222222222 1 75 222212222222 222212222222 1 76 222221111112 222221111121 1 77 222222222222 222222222222 1 78 222222222222 222222222222 1 79 112221111112 112221112112 1 80 112221111112 112221111122 1 81 221222222221 222222222222 1 82 221122222222 222222222222 1 83 222222222222 112221111112 1 84 222221111121 112221112112 1 85 222222222222 112222222222 1 86 222222222222 112221111112 1 87 221222222221 222222222222 1 88 222221111122 222222222222 1 89 221122222222 222222222222 1 90 222222222222 222222222222 1 91 112221111122 112222222222 1 92 112221111112 112221111112 1 93 221122222222 112221111121 1 94 112222222222 222222222222 1 95 222222222222 112221111121 1 96 222222222222 112221111112 1 97 222222222222 222222222222 1 98 222222222222 112221111122 1 99 222222222222 112221111122 1 100 222222222222 222222222222 0 101 222222222222 222222222222 0 102 222222222222 221122222222 0 103 222222222222 222222222222 0 104 222222222222 112221111112 0 105 222222222222 222222222222 0 106 222221111121 222222222222 0 107 112221111122 222222222222 0 108 222222222222 222221111121 0 109 222222222222 222222222222 0 110 222222222222 112221111122 0 111 222221111121 222222222222 0 112 222222222222 222221111112 0 113 221122222222 222222222222 0 114 222222222222 222222222222 0 115 112222222222 222222222222 0 116 222221111121 221122222222 0 117 222222222222 222222222222 0 118 222222222222 222222222222 0 119 112221112222 222222222222 0 120 222221122222 222222222222 0 121 222222222222 222222222222 0 122 222222222222 222222222222 0 123 222221111121 222221111121 0 124 222222222222 222221111112 0 125 222222222222 112222222222 0 126 222222222222 222222222222 0 127 112222222222 112221111122 0 128 112221111112 222222222222 0 129 222221122222 222222222222 0 130 222222222222 222222222222 0 131 222222222222 222212222222 0 132 222222222222 222222222222 0 133 222222222222 222222222222 0 134 222222222222 222222222222 0 135 222221111121 222221111121 0 136 222222222222 222222222222 0 137 221122222222 222222222222 0 138 222221111121 222222222222 0 139 222222222222 112221111121 0 140 222222222222 222221111122 0 141 222222222222 222222222222 0 142 222221122222 222222222222 0 143 222222222222 222222222222 0 144 221222222221 222222222222 0 145 221222222221 222222222222 0 146 222222222222 222222222222 0 147 222212222222 222222222222 0 148 222222222222 222221111121 0 149 112221112222 222222222222 0 150 222222222222 222222222222 0 151 222212222222 222222222222 0 152 222222222222 112221111122 0 153 222221111112 221222222221 0 154 222222222222 222222222222 0 155 222222222222 222222222222 0 156 112222222222 222222222222 0 157 222222222222 222222222222 0 158 112221112112 222222222222 0 159 222221111112 222222222222 0 160 222222222222 222222222222 0 161 222222222222 112221111112 0 162 222222222222 222222222222 0 163 221222222221 222222222222 0 164 222222222222 221222222221 0 165 112222222222 222222222222 0 166 222222222222 222222222222 0 167 221122222222 222222222222 0 168 222222222222 112221111112 0 169 222222222222 222221111121 0 170 222222222222 222222222222 0 171 112222222222 112221111122 0 172 222222222222 222221122222 0 173 222222222222 222222222222 0 174 221222222221 222222222222 0 175 222222222222 222222222222 0 176 112221111112 222222222222 0 177 222222222222 222222222222 0 178 222222222222 222222222222 0 179 222222222222 222222222222 0 180 112221111122 222222222222 0 181 222212222222 222222222222 0 182 222222222222 222222222222 0 183 222221111121 222222222222 0 184 112221111112 112221111112 0 185 222222222222 221222222221 0 186 222212222222 112222222222 0 187 222222222222 222222222222 0 188 222222222222 112221112112 0 189 112221111121 222221111112 0 190 112221111112 221122222222 0 191 112221111112 222222222222 0 192 222222222222 222222222222 0 193 222222222222 222222222222 0 194 222222222222 112221111112 0 195 112221111112 222222222222 0 196 222222222222 112222222222 0 197 112222222222 222222222222 0 198 112221111121 112221111112 0 199 222222222222 222222222222 0 200 222222222222 222222222222 ALTree-v1.3.2/test/create_file/paup_file/caco.phase.out000066400000000000000000001017121412112337500227420ustar00rootroot00000000000000************************************************************* **** **** **** Output from PHASE v2.0.2 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/cbardel/phase/phase.2.0.2.linux/PHASE -c-1 caco.phase caco.phase.out 100 1 100 END COMMAND_LINE BEGIN OUTFILE_LIST caco.phase.out_freqs : haplotype frequency estimates caco.phase.out_pairs : most likely haplotype pairs for each individual caco.phase.out_recom : estimates of recombination parameters caco.phase.out_signif : p-value for testing cases vs controls caco.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 200 Number of Loci: 12 Positions of loci: 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file caco.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 222222222222 224.000000 2 222221122222 6.000000 3 222221111122 6.000000 4 222221111121 20.000000 5 222221111112 5.000000 6 222212222222 12.000000 7 221222222221 14.000000 8 221122222222 11.000000 9 112222222222 20.000000 10 112221112222 6.000000 11 112221112112 11.000000 12 112221111122 14.000000 13 112221111121 10.000000 14 112221111112 41.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY 1: (1,1) 2: (1,1) 3: (1,13) 4: (1,6) 5: (3,14) 6: (1,1) 7: (1,11) 8: (1,1) 9: (1,14) 10: (1,14) 11: (11,14) 12: (1,14) 13: (1,9) 14: (1,14) 15: (1,2) 16: (9,14) 17: (1,9) 18: (1,1) 19: (1,9) 20: (1,6) 21: (9,10) 22: (4,14) 23: (1,4) 24: (6,14) 25: (1,14) 26: (1,14) 27: (1,11) 28: (1,1) 29: (1,12) 30: (1,10) 31: (1,3) 32: (8,9) 33: (1,14) 34: (1,14) 35: (11,12) 36: (1,1) 37: (1,13) 38: (1,12) 39: (1,3) 40: (7,14) 41: (1,1) 42: (1,7) 43: (4,11) 44: (1,1) 45: (1,11) 46: (1,9) 47: (13,13) 48: (1,1) 49: (1,14) 50: (1,14) 51: (1,8) 52: (1,13) 53: (1,1) 54: (1,4) 55: (1,14) 56: (1,10) 57: (7,14) 58: (3,12) 59: (2,10) 60: (1,11) 61: (1,1) 62: (1,6) 63: (1,1) 64: (1,14) 65: (1,1) 66: (4,7) 67: (1,9) 68: (1,14) 69: (1,1) 70: (13,14) 71: (1,7) 72: (1,6) 73: (1,1) 74: (1,1) 75: (6,6) 76: (4,5) 77: (1,1) 78: (1,1) 79: (11,14) 80: (12,14) 81: (1,7) 82: (1,8) 83: (1,14) 84: (4,11) 85: (1,9) 86: (1,14) 87: (1,7) 88: (1,3) 89: (1,8) 90: (1,1) 91: (9,12) 92: (14,14) 93: (8,13) 94: (1,9) 95: (1,13) 96: (1,14) 97: (1,1) 98: (1,12) 99: (1,12) 100: (1,1) 101: (1,1) 102: (1,8) 103: (1,1) 104: (1,14) 105: (1,1) 106: (1,4) 107: (1,12) 108: (1,4) 109: (1,1) 110: (1,12) 111: (1,4) 112: (1,5) 113: (1,8) 114: (1,1) 115: (1,9) 116: (4,8) 117: (1,1) 118: (1,1) 119: (1,10) 120: (1,2) 121: (1,1) 122: (1,1) 123: (4,4) 124: (1,5) 125: (1,9) 126: (1,1) 127: (9,12) 128: (1,14) 129: (1,2) 130: (1,1) 131: (1,6) 132: (1,1) 133: (1,1) 134: (1,1) 135: (4,4) 136: (1,1) 137: (1,8) 138: (1,4) 139: (1,13) 140: (1,3) 141: (1,1) 142: (1,2) 143: (1,1) 144: (1,7) 145: (1,7) 146: (1,1) 147: (1,6) 148: (1,4) 149: (1,10) 150: (1,1) 151: (1,6) 152: (1,12) 153: (5,7) 154: (1,1) 155: (1,1) 156: (1,9) 157: (1,1) 158: (1,11) 159: (1,5) 160: (1,1) 161: (1,14) 162: (1,1) 163: (1,7) 164: (1,7) 165: (1,9) 166: (1,1) 167: (1,8) 168: (1,14) 169: (1,4) 170: (1,1) 171: (9,12) 172: (1,2) 173: (1,1) 174: (1,7) 175: (1,1) 176: (1,14) 177: (1,1) 178: (1,1) 179: (1,1) 180: (1,12) 181: (1,6) 182: (1,1) 183: (1,4) 184: (14,14) 185: (1,7) 186: (6,9) 187: (1,1) 188: (1,11) 189: (4,14) 190: (8,14) 191: (1,14) 192: (1,1) 193: (1,1) 194: (1,14) 195: (1,14) 196: (1,9) 197: (1,9) 198: (13,14) 199: (1,1) 200: (1,1) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 3 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 1 4 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 5 2 2 2 2 2 1 1 1 1 1 (2) 2 1 1 2 2 2 1 1 1 1 1 (1) 2 1 6 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 7 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 1 8 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 9 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 10 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 11 1 1 2 2 2 1 1 1 2 1 1 2 1 1 2 2 2 1 1 1 1 1 1 2 1 12 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 13 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 14 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 15 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 16 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 17 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 18 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 19 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 20 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 21 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 22 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 2 1 23 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 1 24 2 2 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 25 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 26 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 27 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 1 28 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 29 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 30 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 31 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 1 32 2 2 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 33 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 34 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 35 1 1 2 2 2 1 1 1 2 1 1 2 1 1 2 2 2 1 1 1 1 1 2 2 1 36 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 37 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 1 38 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 39 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 1 40 2 2 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 2 1 41 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 42 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 43 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 2 1 1 2 1 44 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 45 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 1 46 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 47 1 1 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 2 1 1 48 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 49 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 50 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 51 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 52 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 1 53 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 54 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 1 55 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 56 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 57 2 2 1 2 2 2 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 1 1 2 1 58 2 2 2 2 2 1 1 1 1 1 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 59 2 2 2 2 2 1 1 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 1 60 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 1 61 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 62 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 63 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 64 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 65 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 66 2 2 2 2 2 1 1 1 1 1 2 1 2 2 1 2 2 2 2 2 2 2 2 1 1 67 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 68 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 69 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 70 1 1 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 2 1 71 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 72 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 73 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 74 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 75 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 76 2 2 2 2 2 1 1 1 1 1 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 77 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 78 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 79 1 1 2 2 2 1 1 1 2 1 1 2 1 1 2 2 2 1 1 1 1 1 1 2 1 80 1 1 2 2 2 1 1 1 1 1 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 81 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 82 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 83 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 84 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 2 1 1 2 1 85 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 86 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 87 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 1 88 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 1 89 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 90 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 91 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 92 1 1 2 2 2 1 1 1 1 1 1 2 1 1 2 2 2 1 1 1 1 1 1 2 1 93 2 2 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 1 1 94 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 1 95 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 1 96 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 1 97 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 98 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 99 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 1 100 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 101 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 102 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 0 103 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 104 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 105 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 106 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 107 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 108 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 109 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 110 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 111 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 112 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 0 113 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 0 114 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 115 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 116 2 2 2 2 2 1 1 1 1 1 2 1 2 2 1 1 2 2 2 2 2 2 2 2 0 117 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 118 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 119 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 0 120 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 0 121 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 122 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 123 2 2 2 2 2 1 1 1 1 1 2 1 2 2 2 2 2 1 1 1 1 1 2 1 0 124 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 0 125 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 126 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 127 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 128 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 129 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 0 130 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 131 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 132 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 133 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 134 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 135 2 2 2 2 2 1 1 1 1 1 2 1 2 2 2 2 2 1 1 1 1 1 2 1 0 136 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 137 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 0 138 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 139 (2) (2) 2 2 2 2 2 2 2 2 2 2 (1) (1) 2 2 2 1 1 1 1 1 2 1 0 140 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 2 0 141 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 142 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 0 143 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 144 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 145 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 146 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 147 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 148 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 149 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 2 2 2 0 150 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 151 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 152 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 153 2 2 2 2 2 1 1 1 1 1 1 2 2 2 1 2 2 2 2 2 2 2 2 1 0 154 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 155 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 156 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 157 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 158 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 0 159 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 0 160 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 161 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 162 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 163 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 164 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 165 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 166 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 167 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 0 168 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 169 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 170 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 171 1 1 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 172 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 0 173 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 174 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 175 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 176 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 177 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 178 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 179 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 180 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2 0 181 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 0 182 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 183 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 0 184 1 1 2 2 2 1 1 1 1 1 1 2 1 1 2 2 2 1 1 1 1 1 1 2 0 185 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 1 0 186 2 2 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 187 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 188 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 2 1 1 2 0 189 2 2 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 2 0 190 2 2 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 191 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 192 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 193 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 194 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 195 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 1 2 0 196 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 197 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 2 0 198 1 1 2 2 2 1 1 1 1 1 2 1 1 1 2 2 2 1 1 1 1 1 1 2 0 199 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 0 200 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 1 1 = = = = = = = = = = = = = = = = = = = = = = = = 1 2 = = = = = = = = = = = = = = = = = = = = = = = = 1 3 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 1 4 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 1 5 2 2 = = = = = = = = (2) = 1 1 = = = = = = = = (1) = 1 6 = = = = = = = = = = = = = = = = = = = = = = = = 1 7 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 1 8 = = = = = = = = = = = = = = = = = = = = = = = = 1 9 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 10 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 11 = = = = = = = = 2 = = = = = = = = = = = 1 = = = 1 12 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 13 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 14 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 15 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 1 16 = = = = = 2 2 2 2 2 2 = = = = = = 1 1 1 1 1 1 = 1 17 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 18 = = = = = = = = = = = = = = = = = = = = = = = = 1 19 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 20 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 1 21 = = = = = 2 2 2 = = = = = = = = = 1 1 1 = = = = 1 22 2 2 = = = = = = = = 2 1 1 1 = = = = = = = = 1 2 1 23 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 1 24 2 2 = = 1 2 2 2 2 2 2 = 1 1 = = 2 1 1 1 1 1 1 = 1 25 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 26 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 27 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 1 28 = = = = = = = = = = = = = = = = = = = = = = = = 1 29 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 1 30 2 2 = = = 2 2 2 = = = = 1 1 = = = 1 1 1 = = = = 1 31 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 1 32 2 2 1 1 = = = = = = = = 1 1 2 2 = = = = = = = = 1 33 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 34 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 35 = = = = = = = = 2 = 1 = = = = = = = = = 1 = 2 = 1 36 = = = = = = = = = = = = = = = = = = = = = = = = 1 37 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 1 38 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 1 39 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 1 40 2 2 1 = = 2 2 2 2 2 2 1 1 1 2 = = 1 1 1 1 1 1 2 1 41 = = = = = = = = = = = = = = = = = = = = = = = = 1 42 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 1 43 2 2 = = = = = = 1 = 2 1 1 1 = = = = = = 2 = 1 2 1 44 = = = = = = = = = = = = = = = = = = = = = = = = 1 45 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 1 46 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 47 = = = = = = = = = = = = = = = = = = = = = = = = 1 48 = = = = = = = = = = = = = = = = = = = = = = = = 1 49 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 50 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 51 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 1 52 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 1 53 = = = = = = = = = = = = = = = = = = = = = = = = 1 54 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 1 55 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 56 2 2 = = = 2 2 2 = = = = 1 1 = = = 1 1 1 = = = = 1 57 2 2 1 = = 2 2 2 2 2 2 1 1 1 2 = = 1 1 1 1 1 1 2 1 58 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 59 2 2 = = = = = 2 = = = = 1 1 = = = = = 1 = = = = 1 60 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 1 61 = = = = = = = = = = = = = = = = = = = = = = = = 1 62 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 1 63 = = = = = = = = = = = = = = = = = = = = = = = = 1 64 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 65 = = = = = = = = = = = = = = = = = = = = = = = = 1 66 = = 2 = = 1 1 1 1 1 = = = = 1 = = 2 2 2 2 2 = = 1 67 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 68 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 69 = = = = = = = = = = = = = = = = = = = = = = = = 1 70 = = = = = = = = = = 2 1 = = = = = = = = = = 1 2 1 71 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 1 72 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 1 73 = = = = = = = = = = = = = = = = = = = = = = = = 1 74 = = = = = = = = = = = = = = = = = = = = = = = = 1 75 = = = = = = = = = = = = = = = = = = = = = = = = 1 76 = = = = = = = = = = 2 1 = = = = = = = = = = 1 2 1 77 = = = = = = = = = = = = = = = = = = = = = = = = 1 78 = = = = = = = = = = = = = = = = = = = = = = = = 1 79 = = = = = = = = 2 = = = = = = = = = = = 1 = = = 1 80 = = = = = = = = = = 2 = = = = = = = = = = = 1 = 1 81 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 1 82 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 1 83 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 84 2 2 = = = = = = 1 = 2 1 1 1 = = = = = = 2 = 1 2 1 85 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 86 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 87 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 1 88 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 1 89 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 1 90 = = = = = = = = = = = = = = = = = = = = = = = = 1 91 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 1 92 = = = = = = = = = = = = = = = = = = = = = = = = 1 93 2 2 1 1 = 2 2 2 2 2 = 2 1 1 2 2 = 1 1 1 1 1 = 1 1 94 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 1 95 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 1 96 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 1 97 = = = = = = = = = = = = = = = = = = = = = = = = 1 98 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 1 99 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 1 100 = = = = = = = = = = = = = = = = = = = = = = = = 0 101 = = = = = = = = = = = = = = = = = = = = = = = = 0 102 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 0 103 = = = = = = = = = = = = = = = = = = = = = = = = 0 104 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 105 = = = = = = = = = = = = = = = = = = = = = = = = 0 106 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 107 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 0 108 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 109 = = = = = = = = = = = = = = = = = = = = = = = = 0 110 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 0 111 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 112 = = = = = 2 2 2 2 2 2 = = = = = = 1 1 1 1 1 1 = 0 113 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 0 114 = = = = = = = = = = = = = = = = = = = = = = = = 0 115 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 116 = = 2 2 = 1 1 1 1 1 = 1 = = 1 1 = 2 2 2 2 2 = 2 0 117 = = = = = = = = = = = = = = = = = = = = = = = = 0 118 = = = = = = = = = = = = = = = = = = = = = = = = 0 119 2 2 = = = 2 2 2 = = = = 1 1 = = = 1 1 1 = = = = 0 120 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 0 121 = = = = = = = = = = = = = = = = = = = = = = = = 0 122 = = = = = = = = = = = = = = = = = = = = = = = = 0 123 = = = = = = = = = = = = = = = = = = = = = = = = 0 124 = = = = = 2 2 2 2 2 2 = = = = = = 1 1 1 1 1 1 = 0 125 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 126 = = = = = = = = = = = = = = = = = = = = = = = = 0 127 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 0 128 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 129 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 0 130 = = = = = = = = = = = = = = = = = = = = = = = = 0 131 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 0 132 = = = = = = = = = = = = = = = = = = = = = = = = 0 133 = = = = = = = = = = = = = = = = = = = = = = = = 0 134 = = = = = = = = = = = = = = = = = = = = = = = = 0 135 = = = = = = = = = = = = = = = = = = = = = = = = 0 136 = = = = = = = = = = = = = = = = = = = = = = = = 0 137 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 0 138 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 139 (2) (2) = = = 2 2 2 2 2 = 2 (1) (1) = = = 1 1 1 1 1 = 1 0 140 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 0 141 = = = = = = = = = = = = = = = = = = = = = = = = 0 142 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 0 143 = = = = = = = = = = = = = = = = = = = = = = = = 0 144 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 145 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 146 = = = = = = = = = = = = = = = = = = = = = = = = 0 147 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 0 148 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 149 2 2 = = = 2 2 2 = = = = 1 1 = = = 1 1 1 = = = = 0 150 = = = = = = = = = = = = = = = = = = = = = = = = 0 151 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 0 152 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 0 153 = = 2 = = 1 1 1 1 1 1 2 = = 1 = = 2 2 2 2 2 2 1 0 154 = = = = = = = = = = = = = = = = = = = = = = = = 0 155 = = = = = = = = = = = = = = = = = = = = = = = = 0 156 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 157 = = = = = = = = = = = = = = = = = = = = = = = = 0 158 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 0 159 = = = = = 2 2 2 2 2 2 = = = = = = 1 1 1 1 1 1 = 0 160 = = = = = = = = = = = = = = = = = = = = = = = = 0 161 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 162 = = = = = = = = = = = = = = = = = = = = = = = = 0 163 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 164 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 165 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 166 = = = = = = = = = = = = = = = = = = = = = = = = 0 167 = = 2 2 = = = = = = = = = = 1 1 = = = = = = = = 0 168 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 169 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 170 = = = = = = = = = = = = = = = = = = = = = = = = 0 171 = = = = = 2 2 2 2 2 = = = = = = = 1 1 1 1 1 = = 0 172 = = = = = 2 2 = = = = = = = = = = 1 1 = = = = = 0 173 = = = = = = = = = = = = = = = = = = = = = = = = 0 174 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 175 = = = = = = = = = = = = = = = = = = = = = = = = 0 176 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 177 = = = = = = = = = = = = = = = = = = = = = = = = 0 178 = = = = = = = = = = = = = = = = = = = = = = = = 0 179 = = = = = = = = = = = = = = = = = = = = = = = = 0 180 2 2 = = = 2 2 2 2 2 = = 1 1 = = = 1 1 1 1 1 = = 0 181 = = = = 2 = = = = = = = = = = = 1 = = = = = = = 0 182 = = = = = = = = = = = = = = = = = = = = = = = = 0 183 = = = = = 2 2 2 2 2 = 2 = = = = = 1 1 1 1 1 = 1 0 184 = = = = = = = = = = = = = = = = = = = = = = = = 0 185 = = 2 = = = = = = = = 2 = = 1 = = = = = = = = 1 0 186 2 2 = = 1 = = = = = = = 1 1 = = 2 = = = = = = = 0 187 = = = = = = = = = = = = = = = = = = = = = = = = 0 188 2 2 = = = 2 2 2 = 2 2 = 1 1 = = = 1 1 1 = 1 1 = 0 189 2 2 = = = = = = = = 2 1 1 1 = = = = = = = = 1 2 0 190 2 2 1 1 = 2 2 2 2 2 2 = 1 1 2 2 = 1 1 1 1 1 1 = 0 191 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 192 = = = = = = = = = = = = = = = = = = = = = = = = 0 193 = = = = = = = = = = = = = = = = = = = = = = = = 0 194 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 195 2 2 = = = 2 2 2 2 2 2 = 1 1 = = = 1 1 1 1 1 1 = 0 196 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 197 2 2 = = = = = = = = = = 1 1 = = = = = = = = = = 0 198 = = = = = = = = = = 2 1 = = = = = = = = = = 1 2 0 199 = = = = = = = = = = = = = = = = = = = = = = = = 0 200 = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = = = = = = = = = = = = = = = = = = = = = = 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = = = = = 1.00 1.00 = = = = = = = = 0.72 = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 1.00 = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 = = = = 0.93 0.93 = = = = = = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = 0.96 0.96 1.00 1.00 = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 0.99 0.99 = = = = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = = = = = 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = 1.00 1.00 = = = = = 1.00 = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = = = = = = = = 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = 1.00 = = = 1.00 = = = = = = = = 1.00 = = 1.00 1.00 = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.99 0.99 = = = = = = 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = 0.98 0.98 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = 1.00 = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 1.00 1.00 = = 0.96 = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 0.93 0.93 = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS ALTree-v1.3.2/test/create_file/paup_file/caco.phase.out_freqs000066400000000000000000000036001412112337500241370ustar00rootroot00000000000000 index haplotype E(freq) S.E E[Freq(0)] S.E.(0) E[Freq(1)] S.E.(1) 1 222222222222 0.555115 0.004229 0.627410 0.004332 0.482823 0.006273 2 222222222212 0.000025 0.000249 0.000050 0.000499 0.000000 0.000035 3 222221122222 0.015025 0.000248 0.020050 0.000495 0.010000 0.000016 4 222221112112 0.000048 0.000342 0.000044 0.000468 0.000050 0.000500 5 222221111122 0.015246 0.002172 0.006150 0.002782 0.024345 0.003072 6 222221111121 0.052410 0.002982 0.065479 0.002162 0.039336 0.005284 7 222221111112 0.014906 0.002744 0.021017 0.002393 0.008794 0.004801 8 222212222222 0.029875 0.000545 0.024750 0.001089 0.035000 0.000022 9 221222222221 0.035000 0.000009 0.035000 0.000021 0.035000 0.000017 10 221122222222 0.027300 0.000712 0.030000 0.000043 0.024601 0.001445 11 112222222222 0.054835 0.004194 0.047490 0.004155 0.062177 0.006272 12 112221112222 0.015000 0.000014 0.010000 0.000027 0.020000 0.000029 13 112221112112 0.027452 0.000342 0.009956 0.000468 0.044950 0.000500 14 112221111122 0.034853 0.002226 0.028950 0.002820 0.040755 0.003133 15 112221111121 0.022491 0.003126 0.009421 0.002138 0.035564 0.005464 16 112221111112 0.100019 0.002729 0.063883 0.002348 0.136156 0.004803 17 112221111111 0.000050 0.000477 0.000050 0.000496 0.000050 0.000496 18 112212222222 0.000125 0.000545 0.000250 0.001089 0.000000 0.000020 19 111122222222 0.000175 0.000673 0.000000 0.000021 0.000349 0.001370 ALTree-v1.3.2/test/create_file/paup_file/caco.phase.out_monitor000066400000000000000000000015641412112337500245150ustar00rootroot00000000000000-613.766 -613.357 -613.393 -613.016 -613.967 -613.729 -613.375 -614.267 -613.225 -614.541 -613.865 -615.541 -613.931 -612.346 -614.596 -614.393 -614.534 -613.869 -613.663 -613.636 -613.661 -614.697 -614.782 -613.689 -613.687 -613.223 -614.346 -613.48 -613.441 -613.017 -613.231 -613.324 -614.747 -614.169 -614.61 -613.456 -613.649 -613.52 -614.671 -615.592 -615.045 -614.39 -614.256 -613.451 -614.576 -613.898 -613.09 -613.859 -613.1 -612.794 -614.097 -614.181 -615.393 -613.269 -613.612 -613.473 -613.996 -613.887 -614.126 -615.226 -616.669 -613.957 -613.176 -613.049 -613.82 -613.907 -613.262 -613.53 -613.178 -614.283 -616.27 -614.025 -613.885 -613.431 -614.968 -614.325 -613.745 -614.61 -613.915 -613.513 -613.473 -614.055 -613.018 -613.077 -613.283 -613.654 -613.29 -613.179 -613.47 -612.917 -615.48 -612.41 -614.563 -613.713 -613.457 -614.041 -616.037 -613.439 -614.21 -614.558 ALTree-v1.3.2/test/create_file/paup_file/caco.phase.out_pairs000066400000000000000000000243101412112337500241360ustar00rootroot00000000000000IND: 1 222222222222 , 222222222222 , 1.000 IND: 2 222222222222 , 222222222222 , 1.000 IND: 3 222222222222 , 112221111121 , 0.792 222221111121 , 112222222222 , 0.206 IND: 4 222222222222 , 222212222222 , 1.000 IND: 5 222221111122 , 112221111112 , 0.725 222221111112 , 112221111122 , 0.275 IND: 6 222222222222 , 222222222222 , 1.000 IND: 7 222222222222 , 112221112112 , 0.999 IND: 8 222222222222 , 222222222222 , 1.000 IND: 9 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 10 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 11 112221112112 , 112221111112 , 1.000 IND: 12 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 13 222222222222 , 112222222222 , 1.000 IND: 14 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 15 222222222222 , 222221122222 , 1.000 IND: 16 112222222222 , 112221111112 , 1.000 IND: 17 222222222222 , 112222222222 , 1.000 IND: 18 222222222222 , 222222222222 , 1.000 IND: 19 222222222222 , 112222222222 , 1.000 IND: 20 222222222222 , 222212222222 , 1.000 IND: 21 112222222222 , 112221112222 , 1.000 IND: 22 222221111121 , 112221111112 , 0.931 222221111112 , 112221111121 , 0.068 IND: 23 222222222222 , 222221111121 , 1.000 IND: 24 222212222222 , 112221111112 , 0.998 IND: 25 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 26 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 27 222222222222 , 112221112112 , 0.999 IND: 28 222222222222 , 222222222222 , 1.000 IND: 29 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 30 222222222222 , 112221112222 , 0.999 IND: 31 222222222222 , 222221111122 , 1.000 IND: 32 222222222222 , 111122222222 , 0.040 221122222222 , 112222222222 , 0.960 IND: 33 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 34 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 35 112221112112 , 112221111122 , 1.000 IND: 36 222222222222 , 222222222222 , 1.000 IND: 37 222222222222 , 112221111121 , 0.791 222221111121 , 112222222222 , 0.207 IND: 38 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 39 222222222222 , 222221111122 , 1.000 IND: 40 221222222221 , 112221111112 , 0.999 IND: 41 222222222222 , 222222222222 , 1.000 IND: 42 222222222222 , 221222222221 , 1.000 IND: 43 222221111121 , 112221112112 , 0.995 IND: 44 222222222222 , 222222222222 , 1.000 IND: 45 222222222222 , 112221112112 , 0.999 IND: 46 222222222222 , 112222222222 , 1.000 IND: 47 112221111121 , 112221111121 , 1.000 IND: 48 222222222222 , 222222222222 , 1.000 IND: 49 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 50 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 51 222222222222 , 221122222222 , 1.000 IND: 52 222222222222 , 112221111121 , 0.793 222221111121 , 112222222222 , 0.205 IND: 53 222222222222 , 222222222222 , 1.000 IND: 54 222222222222 , 222221111121 , 1.000 IND: 55 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 56 222222222222 , 112221112222 , 0.999 IND: 57 221222222221 , 112221111112 , 0.999 IND: 58 222221111122 , 112221111122 , 1.000 IND: 59 222221122222 , 112221112222 , 1.000 IND: 60 222222222222 , 112221112112 , 0.999 IND: 61 222222222222 , 222222222222 , 1.000 IND: 62 222222222222 , 222212222222 , 1.000 IND: 63 222222222222 , 222222222222 , 1.000 IND: 64 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 65 222222222222 , 222222222222 , 1.000 IND: 66 222221111121 , 221222222221 , 1.000 IND: 67 222222222222 , 112222222222 , 1.000 IND: 68 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 69 222222222222 , 222222222222 , 1.000 IND: 70 112221111121 , 112221111112 , 0.998 IND: 71 222222222222 , 221222222221 , 1.000 IND: 72 222222222222 , 222212222222 , 1.000 IND: 73 222222222222 , 222222222222 , 1.000 IND: 74 222222222222 , 222222222222 , 1.000 IND: 75 222212222222 , 222212222222 , 1.000 IND: 76 222221111121 , 222221111112 , 0.999 IND: 77 222222222222 , 222222222222 , 1.000 IND: 78 222222222222 , 222222222222 , 1.000 IND: 79 112221112112 , 112221111112 , 1.000 IND: 80 112221111122 , 112221111112 , 1.000 IND: 81 222222222222 , 221222222221 , 1.000 IND: 82 222222222222 , 221122222222 , 1.000 IND: 83 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 84 222221111121 , 112221112112 , 0.994 IND: 85 222222222222 , 112222222222 , 1.000 IND: 86 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 87 222222222222 , 221222222221 , 1.000 IND: 88 222222222222 , 222221111122 , 1.000 IND: 89 222222222222 , 221122222222 , 1.000 IND: 90 222222222222 , 222222222222 , 1.000 IND: 91 112222222222 , 112221111122 , 1.000 IND: 92 112221111112 , 112221111112 , 1.000 IND: 93 222221111121 , 111122222222 , 0.016 221122222222 , 112221111121 , 0.980 IND: 94 222222222222 , 112222222222 , 1.000 IND: 95 222222222222 , 112221111121 , 0.792 222221111121 , 112222222222 , 0.206 IND: 96 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 97 222222222222 , 222222222222 , 1.000 IND: 98 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 99 222222222222 , 112221111122 , 0.953 222221111122 , 112222222222 , 0.047 IND: 100 222222222222 , 222222222222 , 1.000 IND: 101 222222222222 , 222222222222 , 1.000 IND: 102 222222222222 , 221122222222 , 1.000 IND: 103 222222222222 , 222222222222 , 1.000 IND: 104 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 105 222222222222 , 222222222222 , 1.000 IND: 106 222222222222 , 222221111121 , 1.000 IND: 107 222222222222 , 112221111122 , 0.953 222221111122 , 112222222222 , 0.047 IND: 108 222222222222 , 222221111121 , 1.000 IND: 109 222222222222 , 222222222222 , 1.000 IND: 110 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 111 222222222222 , 222221111121 , 1.000 IND: 112 222222222222 , 222221111112 , 0.999 IND: 113 222222222222 , 221122222222 , 1.000 IND: 114 222222222222 , 222222222222 , 1.000 IND: 115 222222222222 , 112222222222 , 1.000 IND: 116 222221111121 , 221122222222 , 0.995 IND: 117 222222222222 , 222222222222 , 1.000 IND: 118 222222222222 , 222222222222 , 1.000 IND: 119 222222222222 , 112221112222 , 0.999 IND: 120 222222222222 , 222221122222 , 1.000 IND: 121 222222222222 , 222222222222 , 1.000 IND: 122 222222222222 , 222222222222 , 1.000 IND: 123 222221111121 , 222221111121 , 1.000 IND: 124 222222222222 , 222221111112 , 0.999 IND: 125 222222222222 , 112222222222 , 1.000 IND: 126 222222222222 , 222222222222 , 1.000 IND: 127 112222222222 , 112221111122 , 1.000 IND: 128 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 129 222222222222 , 222221122222 , 1.000 IND: 130 222222222222 , 222222222222 , 1.000 IND: 131 222222222222 , 222212222222 , 1.000 IND: 132 222222222222 , 222222222222 , 1.000 IND: 133 222222222222 , 222222222222 , 1.000 IND: 134 222222222222 , 222222222222 , 1.000 IND: 135 222221111121 , 222221111121 , 1.000 IND: 136 222222222222 , 222222222222 , 1.000 IND: 137 222222222222 , 221122222222 , 1.000 IND: 138 222222222222 , 222221111121 , 1.000 IND: 139 222222222222 , 112221111121 , 0.790 222221111121 , 112222222222 , 0.209 IND: 140 222222222222 , 222221111122 , 1.000 IND: 141 222222222222 , 222222222222 , 1.000 IND: 142 222222222222 , 222221122222 , 1.000 IND: 143 222222222222 , 222222222222 , 1.000 IND: 144 222222222222 , 221222222221 , 1.000 IND: 145 222222222222 , 221222222221 , 1.000 IND: 146 222222222222 , 222222222222 , 1.000 IND: 147 222222222222 , 222212222222 , 1.000 IND: 148 222222222222 , 222221111121 , 1.000 IND: 149 222222222222 , 112221112222 , 0.999 IND: 150 222222222222 , 222222222222 , 1.000 IND: 151 222222222222 , 222212222222 , 1.000 IND: 152 222222222222 , 112221111122 , 0.953 222221111122 , 112222222222 , 0.047 IND: 153 222221111112 , 221222222221 , 0.998 IND: 154 222222222222 , 222222222222 , 1.000 IND: 155 222222222222 , 222222222222 , 1.000 IND: 156 222222222222 , 112222222222 , 1.000 IND: 157 222222222222 , 222222222222 , 1.000 IND: 158 222222222222 , 112221112112 , 0.999 IND: 159 222222222222 , 222221111112 , 0.999 IND: 160 222222222222 , 222222222222 , 1.000 IND: 161 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 162 222222222222 , 222222222222 , 1.000 IND: 163 222222222222 , 221222222221 , 1.000 IND: 164 222222222222 , 221222222221 , 1.000 IND: 165 222222222222 , 112222222222 , 1.000 IND: 166 222222222222 , 222222222222 , 1.000 IND: 167 222222222222 , 221122222222 , 1.000 IND: 168 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 169 222222222222 , 222221111121 , 1.000 IND: 170 222222222222 , 222222222222 , 1.000 IND: 171 112222222222 , 112221111122 , 1.000 IND: 172 222222222222 , 222221122222 , 1.000 IND: 173 222222222222 , 222222222222 , 1.000 IND: 174 222222222222 , 221222222221 , 1.000 IND: 175 222222222222 , 222222222222 , 1.000 IND: 176 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 177 222222222222 , 222222222222 , 1.000 IND: 178 222222222222 , 222222222222 , 1.000 IND: 179 222222222222 , 222222222222 , 1.000 IND: 180 222222222222 , 112221111122 , 0.952 222221111122 , 112222222222 , 0.048 IND: 181 222222222222 , 222212222222 , 1.000 IND: 182 222222222222 , 222222222222 , 1.000 IND: 183 222222222222 , 222221111121 , 1.000 IND: 184 112221111112 , 112221111112 , 1.000 IND: 185 222222222222 , 221222222221 , 1.000 IND: 186 222222222222 , 112212222222 , 0.044 222212222222 , 112222222222 , 0.956 IND: 187 222222222222 , 222222222222 , 1.000 IND: 188 222222222222 , 112221112112 , 0.999 IND: 189 222221111121 , 112221111112 , 0.930 222221111112 , 112221111121 , 0.069 IND: 190 221122222222 , 112221111112 , 0.998 IND: 191 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 192 222222222222 , 222222222222 , 1.000 IND: 193 222222222222 , 222222222222 , 1.000 IND: 194 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 195 222222222222 , 112221111112 , 0.983 222221111112 , 112222222222 , 0.017 IND: 196 222222222222 , 112222222222 , 1.000 IND: 197 222222222222 , 112222222222 , 1.000 IND: 198 112221111121 , 112221111112 , 0.998 IND: 199 222222222222 , 222222222222 , 1.000 IND: 200 222222222222 , 222222222222 , 1.000 ALTree-v1.3.2/test/create_file/paup_file/caco.phase.out_recom000066400000000000000000000245221412112337500241320ustar00rootroot00000000000000293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760 0.000393544 5.9584 2.78669 0.478486 0.907596 0.158427 0.431209 0.788454 13.8816 2.06328 0.680348 0.251305 0.000842323 1.08612 7.74698 0.474669 0.727604 0.239732 0.373648 1.38996 8.19752 1.53227 0.437247 0.481374 0.000501811 0.63859 6.14959 0.776848 0.914494 0.212711 0.680679 1.28448 2.76135 2.25261 0.782005 0.762761 0.000501811 0.35663 8.50227 0.647782 0.964044 1.12601 1.25164 1.10936 1.90244 3.6517 0.504571 0.774254 0.000501811 0.686356 2.59719 0.821315 4.54061 0.927993 1.3787 1.88739 2.37621 6.69966 3.14301 0.712516 0.000396019 0.609389 1.12981 0.793391 3.92241 0.667248 0.404491 5.32804 4.75679 5.29492 3.00877 0.714 0.000396019 1.01892 0.354522 1.20873 3.53214 0.741759 1.35392 1.87064 2.36135 2.87143 1.26124 1.71964 0.000913344 1.01892 0.354522 1.20873 3.53214 0.741759 1.35392 1.87064 2.36135 2.87143 1.26124 1.71964 0.000913344 0.55879 0.285401 1.87581 2.01506 0.50696 2.63465 0.548832 1.36601 1.09042 0.443662 1.04189 0.0015277 0.212784 0.383514 2.17963 2.02966 0.602139 1.74228 1.00479 0.793666 0.670155 0.674405 1.10535 0.00172172 0.159812 0.776429 0.724332 2.37289 1.69288 2.05219 0.620925 1.12593 0.89822 0.126828 0.93602 0.00172172 0.255633 2.52472 0.323786 0.670771 1.01491 0.93974 0.785882 1.29485 0.444514 0.294244 0.796798 0.000827408 0.255633 2.52472 0.323786 0.670771 1.01491 0.93974 0.785882 1.29485 0.444514 0.294244 0.796798 0.000893151 0.255633 2.52472 0.323786 0.670771 1.01491 0.93974 0.785882 1.29485 0.444514 0.294244 0.796798 0.000893151 0.263042 3.60246 0.707909 1.6794 0.399298 0.487905 2.46552 1.63285 0.481498 0.573436 0.894465 0.000893151 0.628483 2.22971 0.419829 4.70987 0.339169 0.164367 2.11849 2.84196 0.337126 1.20103 1.52597 0.000619779 1.96986 3.78823 0.381201 1.3402 0.901981 0.110315 10.7129 0.970935 0.167448 1.17331 2.17489 0.000619779 1.02913 2.60199 0.470211 2.17014 0.757432 0.0819351 3.31205 1.57794 0.653834 1.95803 3.05827 0.000579136 0.437032 4.74419 0.318081 2.40608 1.79029 0.125117 2.40972 1.40938 1.53931 1.70629 8.114 0.000493112 0.437032 4.74419 0.318081 2.40608 1.79029 0.125117 2.40972 1.40938 1.53931 1.70629 8.114 0.000493112 0.437032 4.74419 0.318081 2.40608 1.79029 0.125117 2.40972 1.40938 1.53931 1.70629 8.114 0.000556703 0.205758 3.26153 0.166431 2.7438 1.83267 0.0717762 4.11834 2.23163 1.59649 1.55087 23.4534 0.000556703 0.967693 3.2332 0.270524 3.51909 0.927165 0.0706149 6.09127 4.46106 1.2243 1.24533 8.94261 0.00046314 0.858345 5.21641 1.22155 10.3817 0.689881 0.0348355 3.33685 2.61933 0.26534 1.55307 2.28225 0.000299332 0.858345 5.21641 1.22155 10.3817 0.689881 0.0348355 3.33685 2.61933 0.26534 1.55307 2.28225 0.000256893 1.12621 2.65456 1.4211 12.0118 1.47357 0.0931941 1.93862 1.07823 0.132265 0.57923 0.820739 0.000682131 0.904678 1.31413 0.647389 2.38102 1.60222 0.0695488 2.39623 2.0952 0.299529 0.633664 0.390174 0.000506873 1.68088 1.63226 0.233432 0.837155 1.36457 0.402704 5.3887 2.73777 0.332061 0.710795 0.498783 0.000994281 0.690701 5.99665 0.42252 0.377934 0.563832 0.863182 1.26285 2.3585 0.148397 0.276137 0.629108 0.00071791 0.610459 9.4824 0.387895 0.492498 0.748158 0.350406 3.77555 0.650523 0.0832566 0.660904 1.29876 0.000751561 1.05574 3.53967 1.92913 0.663982 0.367085 0.553336 1.15397 0.831754 0.118419 0.805286 0.335954 0.000757216 0.507496 2.50378 1.37262 0.277072 0.12487 0.492137 0.992083 2.24816 0.141455 1.09332 0.649853 0.00144192 0.507496 2.50378 1.37262 0.277072 0.12487 0.492137 0.992083 2.24816 0.141455 1.09332 0.649853 0.00144192 0.507496 2.50378 1.37262 0.277072 0.12487 0.492137 0.992083 2.24816 0.141455 1.09332 0.649853 0.00144192 0.767595 2.6833 0.673001 0.123868 0.31185 0.183895 0.447101 1.22549 0.125028 1.7495 0.439553 0.00144192 0.73171 3.14024 0.364529 1.07809 0.145666 0.537411 1.54528 3.72108 0.135661 0.593142 0.162865 0.0011741 1.31497 2.90026 0.423836 0.956265 0.129051 0.228587 0.975658 2.69 0.103604 0.397242 0.408239 0.0011018 0.843377 1.06037 1.33429 0.328627 0.172458 0.298123 1.97036 6.32333 0.0840604 0.867668 1.71433 0.00188551 0.843377 1.06037 1.33429 0.328627 0.172458 0.298123 1.97036 6.32333 0.0840604 0.867668 1.71433 0.00188551 0.843377 1.06037 1.33429 0.328627 0.172458 0.298123 1.97036 6.32333 0.0840604 0.867668 1.71433 0.00228349 0.544733 2.03465 0.385509 0.419972 0.81303 0.324088 2.51971 5.07115 0.302963 0.386811 0.29537 0.00132019 0.544733 2.03465 0.385509 0.419972 0.81303 0.324088 2.51971 5.07115 0.302963 0.386811 0.29537 0.000859738 0.544733 2.03465 0.385509 0.419972 0.81303 0.324088 2.51971 5.07115 0.302963 0.386811 0.29537 0.000859738 0.577999 7.16535 0.385263 1.60087 0.482222 0.171995 2.59068 12.0276 0.377708 0.100748 0.244712 0.000267063 0.697694 8.0023 0.902351 1.74028 0.475204 0.209502 7.75016 9.11962 1.88054 0.294206 0.522119 0.000252571 0.777215 4.56699 1.70631 0.947164 0.369479 0.354722 7.40219 27.0101 2.99285 0.304155 1.57146 0.000103749 1.35947 12.3759 1.36378 1.00808 1.14485 0.538304 2.19587 36.5218 3.07189 1.174 4.49054 0.000628479 0.688601 3.54671 2.85515 1.04413 0.689995 0.520923 2.09665 15.7393 1.97669 0.465015 2.77933 0.000409634 0.384245 2.15014 1.4627 0.894328 0.385081 0.6711 1.34657 12.7344 1.7203 0.506701 0.444575 0.000763361 0.616874 3.07039 0.918025 0.361446 0.913791 0.492172 1.59125 7.35629 1.13232 0.125114 1.07445 0.000644813 1.64041 5.75504 0.992744 0.578422 1.04756 0.508682 2.31144 6.63557 0.723735 0.369314 0.539037 0.000655114 1.64041 5.75504 0.992744 0.578422 1.04756 0.508682 2.31144 6.63557 0.723735 0.369314 0.539037 0.000655114 0.532735 4.45448 0.278809 0.950375 3.5983 1.05751 4.14759 3.67538 1.24414 1.44933 0.482119 0.000408163 1.51914 6.31296 0.311119 0.533448 6.49628 3.79084 3.06401 5.98743 3.71607 1.43767 0.298164 0.000408163 0.546431 4.15327 0.169109 1.8052 1.61026 1.30777 9.01325 3.01198 0.624283 0.695788 0.343475 0.000482584 0.546431 4.15327 0.169109 1.8052 1.61026 1.30777 9.01325 3.01198 0.624283 0.695788 0.343475 0.000492712 0.150016 4.20697 0.154941 2.03509 2.48652 2.9537 4.17654 3.9858 0.313526 0.3567 0.448938 0.00104376 0.164929 4.44581 0.16806 1.90766 2.80991 2.71451 0.779617 9.90555 0.185808 1.29391 0.774224 0.000921771 0.173033 1.67379 0.406793 1.12893 2.4188 2.66242 3.21667 5.15603 0.490716 0.502179 8.68997 0.000744675 0.113874 3.72866 0.965066 2.82437 1.88532 3.47211 6.23989 2.13207 0.667858 0.16731 3.10385 0.000708798 0.459591 2.41596 1.1741 2.63217 3.77093 14.2416 4.4189 2.41986 0.752112 0.223213 0.710983 0.000370101 1.14965 8.47595 0.429888 6.59756 1.32764 5.23542 3.51894 2.42752 0.988876 1.38453 1.44539 0.000202928 0.810258 22.0796 0.222888 10.5268 0.408837 2.69115 1.18015 0.292964 1.13989 0.61598 0.822454 0.000202928 1.27261 2.3716 1.00372 6.09695 1.19042 2.06562 2.23196 0.774424 1.3878 0.528261 4.49754 0.000623611 1.20713 3.18335 1.45189 6.42081 0.304712 0.463984 2.14754 1.73793 0.547199 0.779745 2.52063 0.000623611 1.20713 3.18335 1.45189 6.42081 0.304712 0.463984 2.14754 1.73793 0.547199 0.779745 2.52063 0.000623611 0.441788 3.69336 2.71974 2.5619 0.338974 0.445481 2.17073 0.447888 0.350851 0.426347 2.40122 0.000398511 1.2016 2.61458 5.25041 4.52563 2.80915 0.175812 4.28717 0.896315 0.691304 0.965578 2.40004 0.000398511 0.850091 5.75161 3.07562 1.39333 2.34886 0.283995 7.81433 0.706485 0.521203 0.805188 1.95562 0.000574314 0.850091 5.75161 3.07562 1.39333 2.34886 0.283995 7.81433 0.706485 0.521203 0.805188 1.95562 0.000574314 0.949821 12.2918 2.10568 1.2036 1.46687 0.181435 1.93669 0.996414 0.286215 0.373217 1.10946 0.000574314 0.59557 6.57884 5.46132 1.06696 0.856059 0.13611 1.1837 2.55758 0.238076 1.49261 0.803682 0.000388315 0.813744 12.2097 3.37485 3.10051 1.63998 0.171107 2.36551 10.409 0.18225 1.42194 0.637549 0.000388315 0.937362 2.07701 1.94727 5.32289 0.867615 0.302658 4.61473 21.5677 0.132355 1.71254 0.957763 0.000443264 0.542432 1.52006 1.74095 11.7113 1.31718 0.510762 4.97927 13.5078 0.755393 1.88324 0.999278 0.000443264 0.374565 1.18049 2.04795 6.1762 0.840161 0.531692 2.20385 37.304 0.774564 6.75428 0.958776 0.000443264 0.329483 1.58026 2.24534 4.27244 0.410483 0.648674 2.28327 57.8324 0.800175 3.25358 1.10229 0.000370709 0.704408 1.10358 1.74587 11.0683 0.150022 1.12998 4.41563 28.4381 0.874559 6.17282 1.37797 0.000492933 0.983631 3.23438 5.13202 8.45855 0.484695 0.620607 3.12965 22.4364 1.03345 1.84397 0.881356 0.000157606 1.22074 11.7435 2.61503 3.31152 0.225625 0.995412 4.935 6.79874 1.73535 2.10761 0.834729 0.000406557 0.761067 6.99674 1.16149 4.03154 0.192392 0.539269 2.65324 4.02536 0.954411 0.929972 1.65554 0.000406557 2.00378 7.24102 0.795962 12.4883 0.314985 0.703411 1.84454 7.84488 1.7019 0.518936 0.460079 0.000170653 1.69248 4.78386 0.519634 6.24708 0.0812359 0.534058 1.97235 3.35377 0.831196 0.264399 0.228781 0.000213689 1.69248 4.78386 0.519634 6.24708 0.0812359 0.534058 1.97235 3.35377 0.831196 0.264399 0.228781 0.000447429 0.971073 1.84156 1.42048 6.82482 0.131073 0.9533 0.642353 2.01859 0.584758 0.379496 0.112628 0.000720377 2.3193 2.03893 1.08889 9.09212 0.183816 0.666393 0.871415 1.18396 0.956273 0.162195 0.134702 0.000387185 2.3193 2.03893 1.08889 9.09212 0.183816 0.666393 0.871415 1.18396 0.956273 0.162195 0.134702 0.000192591 2.10795 5.46576 2.78584 16.2581 0.630966 0.618288 1.65547 1.61205 5.85926 0.366595 0.149156 0.000312601 0.936756 4.58622 0.6424 4.49982 1.63617 0.228948 2.8828 5.78363 1.38357 0.47729 0.302353 0.000354182 1.1666 1.32848 1.32603 2.53522 2.41363 0.261496 3.04003 4.00776 1.20925 0.341897 1.80799 0.00125954 0.55311 1.27387 0.282124 1.08977 2.34851 0.291991 3.71516 3.41684 0.735741 0.882259 2.87549 0.000416418 0.55311 1.27387 0.282124 1.08977 2.34851 0.291991 3.71516 3.41684 0.735741 0.882259 2.87549 0.00079303 0.884978 1.21613 0.197333 0.945915 2.60808 1.07709 1.40486 2.35847 1.07769 0.738796 1.30497 0.00079303 0.898302 3.5575 0.166039 0.929205 0.71007 4.78685 0.670292 1.79181 1.12095 0.759846 1.04495 0.000956429 0.184011 3.67472 0.112583 0.0907919 0.877149 2.20834 0.121293 0.368791 0.370334 0.549633 1.08698 0.00117186 1.23755 1.58815 0.131135 0.043515 1.08794 0.670353 0.330936 0.450556 0.33746 0.44397 1.48593 0.00177964 0.742412 6.41323 0.0618267 0.117384 0.377021 1.72284 0.641983 0.439912 0.495258 0.74687 2.73297 0.00177964 0.347945 3.99902 0.0831539 0.198085 0.694899 1.21558 0.958362 1.89391 1.58313 0.567526 1.33721 0.000614328 0.256175 2.84897 0.706956 0.114828 0.363835 2.90409 0.658347 2.37268 8.70424 2.36469 3.25852 0.000905162 0.269834 0.897171 0.941207 0.0696426 0.417761 4.21433 0.924518 6.77901 3.48419 3.16389 0.951384 ALTree-v1.3.2/test/create_file/paup_file/caco.prepaup000066400000000000000000000022071412112337500225070ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=15 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H004 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 H000_ancetre [add ancestral haplotype] ; end; begin assumptions; ancstates *anc vector = [add ancestral haplotype]; end; begin paup; set nowarnreset autoclose maxtrees = [2000] increase=[no - Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=[deltran - acctran] ancstates=anc; hsearch; savetrees [from=1 to=1] file=[test.tree] root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=[test.tree]; log file = [test.res.log] replace=[yes - no]; describetrees [all] /plot=[cladogram - phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/create_file/paup_file/create_file000077500000000000000000000005631412112337500223770ustar00rootroot00000000000000#!/bin/sh -x # To run phase ~/phase/phase.2.0.2.linux/PHASE -c-1 caco.phase caco.phase.out 100 1 100 # To obtain a paup input file ../../../altree-convert -i caco.phase.out -p paup \ -t NUM -r phase -c nb_cas_control.txt -o caco.prepaup # Warning: the file caco.prepaup is not a valid paup input file. # You must select options, file names, etc before running paup ALTree-v1.3.2/test/create_file/paup_file/nb_cas_control.txt000066400000000000000000000003221412112337500237260ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H004 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/create_file/phy-paml_file/000077500000000000000000000000001412112337500207655ustar00rootroot00000000000000ALTree-v1.3.2/test/create_file/phy-paml_file/NUM000066400000000000000000000010151412112337500213440ustar00rootroot00000000000000H019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 ALTree-v1.3.2/test/create_file/phy-paml_file/create_file000077500000000000000000000004121412112337500231520ustar00rootroot00000000000000#!/bin/sh -x # To run Famhap: ~/FAMHAP/FAMHAP15/famhap15 fam19_0 trio.fmh dp P # To obtain phylip/paml input files using altree-convert ../../../altree-convert -i trio.fmh \ -j fam19_0_H1_HAPLOTYPES -p phylip -r famhap -t NUM \ -c nb_cas_control.txt -o trio.phy ALTree-v1.3.2/test/create_file/phy-paml_file/fam19_0000066400000000000000000000374521412112337500220570ustar00rootroot000000000000000 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 2 1 1 1 1 1 1 2 2 0 2 0 0 2 1 1 1 1 1 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 0 3 1 2 1 2 2 1 1 1 2 2 2 1 1 2 2 1 1 2 1 2 1 2 2 1 1 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 2 1 1 1 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 2 1 3 1 2 1 2 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 1 1 2 2 1 0 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 1 2 2 2 1 1 2 2 0 0 2 1 1 2 1 1 1 2 1 2 2 2 1 1 1 2 1 2 1 2 1 1 2 3 1 2 1 2 1 2 1 1 1 2 1 2 2 2 2 1 2 2 1 2 2 2 1 1 3 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 2 1 2 1 2 1 1 1 3 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 3 3 1 2 1 2 1 2 2 1 2 2 2 2 2 1 1 2 1 1 1 1 1 1 1 1 4 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 4 2 0 0 2 1 1 1 2 1 2 1 2 1 2 1 1 2 1 2 1 2 1 2 1 1 4 3 1 2 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 2 2 2 2 2 1 1 5 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 5 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1 5 3 1 2 1 2 1 2 2 1 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 6 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 1 2 1 2 1 2 1 1 6 2 0 0 2 1 1 1 1 2 2 2 2 2 2 2 1 1 2 1 2 1 1 1 1 1 6 3 1 2 1 2 1 1 1 1 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 7 1 0 0 1 1 1 2 1 1 2 2 1 2 1 1 1 1 1 2 1 2 1 2 1 1 7 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 1 1 2 2 2 2 2 2 1 1 7 3 1 2 2 2 1 2 1 1 2 2 1 2 1 1 1 1 1 2 1 2 1 2 1 1 8 1 0 0 1 1 1 2 1 1 1 2 1 2 2 1 1 2 2 1 2 1 2 1 1 2 8 2 0 0 2 1 1 1 2 1 2 2 2 2 2 2 1 1 1 2 1 2 1 1 1 1 8 3 1 2 2 2 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 2 1 9 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 9 2 0 0 2 1 2 1 1 1 2 1 2 1 1 1 2 2 2 2 2 2 2 2 1 1 9 3 1 2 2 2 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1 10 1 0 0 1 1 1 1 1 2 1 2 1 2 1 2 2 1 2 1 2 1 2 2 1 1 10 2 0 0 2 1 1 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 10 3 1 2 1 2 1 1 1 2 1 2 1 2 1 2 2 1 2 1 2 1 2 1 1 1 11 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 2 1 1 11 2 0 0 2 1 1 2 1 1 1 2 1 2 2 1 2 2 2 2 1 2 2 2 1 1 11 3 1 2 1 2 2 1 1 1 2 1 2 1 1 2 2 2 2 2 2 1 2 2 1 1 12 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 2 1 1 12 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 1 1 1 12 3 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 13 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 1 2 1 2 1 2 1 1 13 2 0 0 2 1 1 1 1 2 1 2 1 2 2 2 2 1 2 1 1 1 2 1 1 1 13 3 1 2 1 2 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 14 1 0 0 1 1 1 2 2 1 2 2 2 1 2 1 1 2 1 2 1 2 1 2 1 1 14 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 2 1 14 3 1 2 2 2 2 1 1 2 2 2 1 2 1 2 2 1 2 1 2 1 2 1 1 1 15 1 0 0 1 1 1 1 1 2 1 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 15 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1 15 3 1 2 1 2 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 16 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 2 1 2 1 2 1 1 1 16 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 16 3 1 2 1 2 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 17 1 0 0 1 1 1 2 1 1 2 1 1 1 2 1 1 2 2 2 2 1 2 2 1 1 17 2 0 0 2 1 1 1 1 2 1 2 1 2 2 2 1 1 1 2 1 2 1 2 1 1 17 3 1 2 1 2 2 1 1 2 1 2 1 2 1 2 2 1 2 2 1 2 2 2 1 1 18 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 1 18 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 1 1 1 1 1 1 1 2 18 3 1 2 1 2 1 1 2 1 2 2 2 1 2 2 1 1 2 1 2 1 2 1 1 1 19 1 0 0 1 1 1 1 1 2 1 2 1 2 2 2 2 1 1 1 1 1 1 1 2 1 19 2 0 0 2 1 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1 19 3 1 2 1 2 1 2 1 1 1 2 1 2 2 1 2 2 1 2 1 2 1 2 2 1 20 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 2 1 1 20 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 2 20 3 1 2 2 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 2 21 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 1 1 2 21 2 0 0 2 1 2 1 1 1 2 2 2 1 2 2 1 1 2 1 2 1 2 1 1 1 21 3 1 2 1 2 1 1 2 1 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 22 1 0 0 1 1 1 1 1 2 1 2 1 2 1 2 2 1 2 1 2 1 2 2 1 1 22 2 0 0 2 1 2 2 1 1 2 2 1 1 1 1 2 2 2 2 2 2 2 2 1 1 22 3 1 2 2 2 1 2 1 1 1 2 1 1 1 1 2 2 2 2 2 2 2 2 1 1 23 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 23 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 23 3 1 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 24 1 0 0 1 1 2 1 1 2 1 2 1 2 1 2 2 1 2 2 1 2 2 2 1 1 24 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 2 1 24 3 1 2 2 2 2 2 1 1 1 2 1 2 1 1 2 2 2 1 1 1 2 1 1 2 25 1 0 0 1 1 1 2 1 1 2 2 1 2 2 1 1 2 2 1 2 1 2 1 1 2 25 2 0 0 2 1 2 1 1 1 2 1 2 1 1 2 2 1 2 1 2 1 2 1 2 1 25 3 1 2 1 2 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 2 26 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 1 26 2 0 0 2 1 2 2 1 1 2 2 2 2 1 1 2 2 1 2 1 2 1 2 1 1 26 3 1 2 2 2 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1 27 1 0 0 1 1 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1 27 2 0 0 2 1 1 2 2 1 2 1 2 1 2 1 1 2 1 2 1 1 1 2 1 1 27 3 1 2 2 2 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 1 1 1 28 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 1 2 1 2 1 2 1 1 28 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 1 28 3 1 2 2 2 1 1 1 1 2 2 1 1 2 2 1 1 2 2 2 2 2 2 1 1 29 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 1 1 2 1 2 1 2 1 1 2 29 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 29 3 1 2 2 2 2 2 1 1 2 2 2 2 1 1 1 1 2 2 2 2 2 2 1 1 30 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 2 1 1 1 1 1 30 2 0 0 2 1 2 1 1 1 2 2 2 1 1 2 2 1 1 2 1 2 1 2 2 1 30 3 1 2 1 2 1 2 2 1 2 2 2 2 2 1 1 2 1 1 2 1 1 1 1 2 31 1 0 0 1 1 1 1 1 1 1 2 1 1 1 2 2 1 2 2 2 2 2 2 1 1 31 2 0 0 2 1 2 1 1 1 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 1 31 3 1 2 1 2 1 2 1 1 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 1 32 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 1 2 1 2 1 2 2 1 32 2 0 0 2 1 1 1 1 2 1 2 1 2 2 2 2 1 2 2 1 2 2 2 1 1 32 3 1 2 2 2 2 1 1 2 2 2 2 2 1 2 2 1 1 2 1 2 1 2 2 1 33 1 0 0 1 1 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1 33 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 1 33 3 1 2 1 2 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 1 1 1 34 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 2 2 1 2 1 2 1 1 2 34 2 0 0 2 1 2 2 1 1 2 2 2 2 1 1 1 2 1 1 1 1 1 1 2 2 34 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1 2 35 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 35 2 0 0 2 1 1 1 1 1 1 2 1 2 2 2 2 1 2 1 1 1 2 1 1 1 35 3 1 2 2 2 2 1 1 1 2 2 2 2 1 2 2 1 2 1 2 1 2 1 1 1 36 1 0 0 1 1 2 1 1 1 1 2 1 1 1 2 2 1 2 2 1 2 2 2 1 1 36 2 0 0 2 1 2 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 2 1 1 36 3 1 2 1 2 1 1 1 1 2 2 1 1 2 2 1 1 2 2 2 2 2 2 1 1 37 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 37 2 0 0 2 1 2 1 1 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 37 3 1 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 38 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 1 38 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 2 1 1 1 1 38 3 1 2 1 2 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 2 1 1 1 1 39 1 0 0 1 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 2 1 2 1 1 2 39 2 0 0 2 1 1 2 1 1 1 2 1 2 2 1 2 2 2 1 1 1 2 1 1 2 39 3 1 2 2 2 2 2 1 1 2 2 2 2 1 1 1 2 2 1 2 1 2 1 1 2 40 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 40 2 0 0 2 1 1 2 2 1 2 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 40 3 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 2 41 1 0 0 1 1 1 2 2 1 2 1 2 1 2 1 1 2 1 2 1 1 1 2 2 1 41 2 0 0 2 1 2 2 1 1 2 2 2 2 1 1 2 1 1 2 1 2 1 2 2 1 41 3 1 2 2 2 2 2 1 1 1 2 1 2 1 1 2 2 2 1 1 1 2 1 1 2 42 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 1 2 1 2 1 2 1 1 42 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 2 42 3 1 2 1 2 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 43 1 0 0 1 1 1 1 2 1 2 1 2 1 2 1 1 2 2 2 2 2 2 2 1 1 43 2 0 0 2 1 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 43 3 1 2 1 2 1 2 2 1 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 44 1 0 0 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 2 1 2 1 1 1 44 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 44 3 1 2 1 2 1 2 1 1 1 2 1 2 1 1 2 1 2 1 2 1 2 1 1 2 45 1 0 0 1 1 1 2 2 1 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1 45 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1 45 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 46 1 0 0 1 1 1 1 1 2 1 2 1 2 2 2 2 1 1 1 1 1 1 1 2 1 46 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 2 1 1 46 3 1 2 1 2 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 2 1 1 47 1 0 0 1 1 1 2 2 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 47 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1 47 3 1 2 2 2 2 2 1 1 2 2 2 2 1 1 1 2 1 2 1 2 1 2 2 1 48 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 1 1 1 48 2 0 0 2 1 1 1 1 2 1 2 1 2 2 2 1 1 2 2 2 2 2 2 1 1 48 3 1 2 2 2 2 1 1 2 2 2 2 2 1 2 2 1 2 2 2 2 2 2 1 1 49 1 0 0 1 1 2 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 2 1 49 2 0 0 2 1 2 2 1 1 2 2 2 2 1 1 2 1 1 1 1 1 1 1 2 2 49 3 1 2 2 2 2 2 1 1 2 2 2 2 1 1 2 2 1 1 1 1 1 1 2 2 50 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 1 50 2 0 0 2 1 1 1 1 1 1 2 1 1 1 2 2 1 2 2 2 2 2 2 1 1 50 3 1 2 1 2 1 1 2 1 2 1 2 1 2 1 1 2 2 2 2 2 2 2 1 1 51 1 0 0 1 1 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1 51 2 0 0 2 1 1 2 1 1 1 1 1 1 2 1 1 2 2 2 2 1 2 2 1 1 51 3 1 2 1 2 1 2 1 1 2 1 1 1 2 1 1 2 2 2 2 1 2 2 1 1 52 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 2 1 1 52 2 0 0 2 1 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1 52 3 1 2 2 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 1 2 2 2 1 1 53 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 53 2 0 0 2 1 2 1 1 1 2 1 2 1 1 2 2 1 2 2 2 2 2 2 1 1 53 3 1 2 2 2 1 1 2 1 2 1 2 1 2 2 1 1 1 2 1 2 1 2 2 1 54 1 0 0 1 1 1 2 2 1 2 2 2 2 2 1 1 2 2 1 2 1 2 1 1 2 54 2 0 0 2 1 1 1 2 1 2 1 2 1 2 2 1 2 2 2 2 1 2 2 1 1 54 3 1 2 1 2 2 1 1 1 2 1 2 1 1 2 2 2 1 2 1 1 1 2 2 1 55 1 0 0 1 1 1 1 1 1 1 2 1 1 2 2 2 1 2 2 1 2 2 2 1 1 55 2 0 0 2 1 2 1 1 2 1 2 1 2 2 2 1 1 1 1 1 1 1 2 1 1 55 3 1 2 1 2 1 2 1 1 1 1 1 1 2 2 2 1 2 1 1 1 2 1 1 1 56 1 0 0 1 1 2 1 1 1 1 1 1 1 1 2 2 2 2 2 1 1 2 2 1 1 56 2 0 0 2 1 2 1 1 1 2 1 2 1 1 2 1 2 1 2 1 1 1 2 2 1 56 3 1 2 1 2 2 2 1 1 1 2 1 2 1 1 2 1 2 1 1 1 2 1 1 2 57 1 0 0 1 1 2 1 1 2 1 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 57 2 0 0 2 1 1 1 1 2 1 2 1 2 1 2 2 1 2 2 2 2 2 2 1 1 57 3 1 2 2 2 2 1 1 1 1 1 1 1 2 1 1 2 2 2 2 2 2 2 1 1 58 1 0 0 1 1 1 2 1 1 2 2 1 2 2 2 1 1 1 1 1 1 1 1 1 2 58 2 0 0 2 1 1 1 2 1 2 2 2 1 2 2 1 1 1 2 1 2 1 2 1 1 58 3 1 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 2 1 59 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 2 1 1 2 1 2 1 2 2 1 59 2 0 0 2 1 1 2 1 1 2 2 1 2 2 1 1 2 1 2 1 2 1 2 2 1 59 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 2 1 2 1 2 1 2 2 1 60 1 0 0 1 1 1 1 1 1 2 1 1 1 2 2 1 2 2 2 2 1 2 2 1 1 60 2 0 0 2 1 1 1 2 1 2 1 2 1 2 1 1 2 1 2 1 2 1 2 1 1 60 3 1 2 1 2 1 1 1 1 2 1 1 1 2 1 1 2 2 2 2 2 2 2 1 1 61 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 2 2 61 2 0 0 2 1 1 2 1 1 1 2 1 2 2 1 2 2 2 2 1 2 2 2 1 1 61 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 2 1 2 1 2 1 2 2 1 62 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 2 1 62 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 1 1 1 62 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 63 1 0 0 1 1 1 2 1 1 2 2 1 2 2 1 1 2 2 1 2 1 2 1 1 2 63 2 0 0 2 1 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1 63 3 1 2 1 2 2 1 1 1 2 2 2 1 1 2 2 1 1 2 1 2 1 2 2 1 64 1 0 0 1 1 2 1 1 1 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 64 2 0 0 2 1 1 1 1 1 2 2 1 2 2 2 1 1 1 2 1 2 1 2 1 1 64 3 1 2 1 2 1 1 1 1 2 2 1 2 2 2 1 1 1 2 1 2 1 2 1 1 65 1 0 0 1 1 1 2 1 1 2 2 1 2 2 1 1 1 2 2 2 2 2 2 1 1 65 2 0 0 2 1 1 2 2 1 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 65 3 1 2 1 2 2 2 1 1 2 1 2 1 1 2 1 1 2 1 2 1 2 1 1 1 66 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 2 1 2 2 2 2 2 2 1 1 66 2 0 0 2 1 1 1 1 1 2 1 1 1 2 2 1 2 2 2 2 2 2 2 1 1 66 3 1 2 2 2 1 1 2 1 2 1 2 1 2 2 1 2 2 2 2 2 2 2 1 1 67 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 1 2 1 2 1 2 1 1 67 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 2 2 1 2 1 2 1 1 1 67 3 1 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 68 1 0 0 1 1 2 1 1 1 2 1 2 1 1 2 1 1 2 1 2 1 2 1 1 1 68 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 2 2 1 1 1 68 3 1 2 2 2 2 1 1 2 2 2 2 2 1 2 1 1 2 1 2 2 2 1 1 1 69 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1 2 69 2 0 0 2 1 1 1 2 1 2 2 2 1 2 2 1 1 1 1 1 1 1 1 1 1 69 3 1 2 2 2 2 1 1 2 2 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 70 1 0 0 1 1 1 2 2 1 2 1 2 1 2 1 1 2 1 2 1 1 1 2 1 1 70 2 0 0 2 1 1 1 2 1 2 2 2 1 2 2 1 1 2 1 2 1 2 1 1 2 70 3 1 2 1 2 2 1 1 2 1 2 1 2 1 2 2 1 2 2 1 2 2 2 1 1 71 1 0 0 1 1 1 2 2 1 2 1 2 1 2 1 1 2 1 2 1 1 1 2 1 1 71 2 0 0 2 1 1 1 2 1 2 2 2 1 2 2 1 1 1 2 1 2 1 2 1 1 71 3 1 2 1 2 2 1 1 1 1 2 1 1 1 2 2 1 2 2 1 2 2 2 1 1 72 1 0 0 1 1 2 1 1 1 1 1 1 1 1 2 2 1 2 1 1 1 2 1 1 1 72 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 2 2 72 3 1 2 1 2 2 2 1 1 1 2 1 2 1 1 2 1 2 1 1 1 2 1 1 2 73 1 0 0 1 1 1 2 1 1 1 2 1 2 2 1 2 2 2 1 2 1 2 1 1 2 73 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 1 2 1 73 3 1 2 1 2 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 2 1 74 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 74 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 74 3 1 2 1 2 1 1 2 2 2 2 2 2 2 2 1 1 2 1 2 1 2 1 1 1 75 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 2 1 1 75 2 0 0 2 1 1 1 1 1 2 2 1 1 2 2 1 1 1 2 1 2 1 2 1 1 75 3 1 2 2 2 1 1 2 1 2 2 2 1 2 2 1 1 1 1 1 1 2 1 1 1 76 1 0 0 1 1 1 1 1 1 2 1 1 1 2 2 1 2 2 2 2 1 2 2 1 1 76 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 1 76 3 1 2 2 2 1 1 1 1 2 2 1 1 2 2 1 1 2 2 2 2 2 2 1 1 77 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 1 1 1 1 1 1 2 1 77 2 0 0 2 1 2 2 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 77 3 1 2 1 2 1 2 2 1 2 1 2 1 2 1 1 2 1 2 1 1 1 2 1 1 78 1 0 0 1 1 2 1 1 1 1 2 1 1 1 2 2 1 2 2 1 2 2 2 1 1 78 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 78 3 1 2 2 2 2 1 1 2 1 2 1 2 1 2 2 1 2 1 1 1 2 1 1 1 79 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 2 2 79 2 0 0 2 1 1 1 2 1 2 1 2 1 2 2 1 2 2 2 2 1 2 2 1 1 79 3 1 2 1 2 1 1 1 1 2 1 1 1 2 2 1 2 2 2 2 1 2 2 2 1 80 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 80 2 0 0 2 1 2 2 1 1 2 2 2 2 1 1 2 2 1 2 1 2 1 2 1 1 80 3 1 2 1 2 1 2 2 1 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1 81 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 1 1 1 2 1 2 1 2 2 1 81 2 0 0 2 1 1 1 2 1 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 1 81 3 1 2 1 2 2 1 1 2 2 2 2 2 1 2 1 1 1 2 1 2 1 2 2 1 82 1 0 0 1 1 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 2 1 1 82 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 1 1 2 1 2 1 2 1 1 82 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 1 2 2 2 2 2 2 1 1 83 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 83 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1 83 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 84 1 0 0 1 1 1 1 1 2 1 2 1 2 2 2 1 1 1 2 1 2 1 2 1 1 84 2 0 0 2 1 2 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 2 2 1 1 84 3 1 2 2 2 1 2 2 1 2 2 2 2 2 1 1 1 2 2 2 2 2 2 1 1 85 1 0 0 1 1 1 1 1 1 2 2 1 1 2 2 1 1 2 2 2 2 2 2 1 1 85 2 0 0 2 1 1 1 1 1 2 2 1 1 2 2 1 1 2 2 2 2 2 2 1 1 85 3 1 2 1 2 1 1 1 1 2 2 1 1 2 2 1 1 2 2 2 2 2 2 1 1 86 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 2 1 2 1 2 1 1 1 86 2 0 0 2 1 2 1 1 1 2 2 2 1 1 2 2 1 1 2 1 2 1 2 1 1 86 3 1 2 2 2 1 2 2 1 2 2 2 2 2 1 1 2 2 1 2 1 2 1 1 1 87 1 0 0 1 1 2 1 1 1 1 1 1 1 1 2 2 2 2 2 1 1 2 2 1 1 87 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 87 3 1 2 1 2 2 1 1 2 1 2 1 2 1 2 2 1 2 1 1 1 2 1 1 1 88 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1 2 88 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 88 3 1 2 1 2 2 1 1 2 2 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 89 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 2 1 2 1 2 1 1 1 89 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 1 1 1 1 1 1 2 1 89 3 1 2 2 2 1 1 2 1 2 2 2 1 2 2 1 1 2 1 2 1 2 1 1 2 90 1 0 0 1 1 2 1 1 1 2 1 2 1 1 1 2 2 2 2 2 2 2 2 1 1 90 2 0 0 2 1 1 1 2 1 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 1 90 3 1 2 2 2 1 1 1 2 1 2 1 2 1 2 2 1 2 2 2 2 2 2 1 1 91 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 2 1 2 1 2 1 1 1 91 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 1 91 3 1 2 1 2 2 1 1 2 2 2 2 2 1 2 2 1 2 2 2 2 2 2 1 1 92 1 0 0 1 1 2 2 1 1 2 2 1 2 1 1 2 1 2 2 2 2 2 2 1 1 92 2 0 0 2 1 2 2 1 1 2 2 2 2 1 1 2 2 2 1 2 1 2 1 1 2 92 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 1 2 2 1 2 1 2 1 1 2 93 1 0 0 1 1 1 1 1 2 2 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 93 2 0 0 2 1 1 1 1 1 1 2 1 1 2 2 1 1 2 2 2 2 2 2 1 1 93 3 1 2 1 2 1 1 1 1 2 2 1 1 1 2 1 1 1 2 1 2 1 2 1 1 94 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 1 1 2 1 2 1 2 1 1 1 94 2 0 0 2 1 2 2 1 1 2 2 2 2 1 2 1 1 2 1 2 1 2 1 1 1 94 3 1 2 2 2 2 2 1 1 2 2 2 2 1 1 1 1 2 2 2 2 2 2 1 1 95 1 0 0 1 1 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1 95 2 0 0 2 1 2 1 1 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 95 3 1 2 2 2 1 2 1 1 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1 96 1 0 0 1 1 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 96 2 0 0 2 1 1 2 2 1 2 2 2 2 2 2 1 1 1 2 2 2 1 2 1 1 96 3 1 2 2 2 2 1 1 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 97 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 2 2 2 2 2 1 1 97 2 0 0 2 1 1 1 1 1 2 1 1 1 2 1 1 2 2 2 2 2 2 2 1 1 97 3 1 2 2 2 1 1 1 1 2 1 1 1 2 1 1 2 2 2 2 2 2 2 1 1 98 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 2 1 2 1 2 1 1 1 98 2 0 0 2 1 2 2 1 1 2 2 2 1 1 1 2 2 2 1 2 2 2 2 1 1 98 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1 99 1 0 0 1 1 1 2 2 1 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 99 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 2 1 99 3 1 2 1 2 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1 ALTree-v1.3.2/test/create_file/phy-paml_file/fam19_0.gm000066400000000000000000000001371412112337500224470ustar00rootroot00000000000000MARKERID NAME LOCATION 1 L1 0 2 L2 1 3 L3 2 4 L4 3 5 L5 4 6 L6 5 7 L7 6 8 L8 7 9 L9 8 10 L10 9 ALTree-v1.3.2/test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES000066400000000000000000000125541412112337500241530ustar00rootroot00000000000000HAPLOTYPE EXPLANATIONS with weight >= 0.05 UNDER H1, i.e. depending on disease status. For nuclear families: HAPLO1=father's transmitted haplotype. HAPLO2=father's nontransmitted haplotype. HAPLO3=mother's transmitted haplotype. HAPLO4=mother's nontransmitted haplotype. Transmission is assigned with respect to first affected child of the family. Haplotpyes are coded as a single integer. See outputfile. Selected loci: 1 2 3 4 5 6 7 8 9 10 FID PID HAPLO1 HAPLO2 HAPLO3 HAPLO4 LIKELIHOOD_WEIGHT 0 parental_haplotypes 721 721 174 224 1.000000 1 parental_haplotypes 734 174 481 174 1.000000 2 parental_haplotypes 58 62 750 32 1.000000 3 parental_haplotypes 480 494 720 481 1.000000 4 parental_haplotypes 734 734 30 480 1.000000 5 parental_haplotypes 494 480 734 480 1.000000 6 parental_haplotypes 174 480 236 480 1.000000 7 parental_haplotypes 128 718 718 494 1.000000 8 parental_haplotypes 721 46 480 236 1.000000 9 parental_haplotypes 174 480 734 30 1.000000 10 parental_haplotypes 30 482 480 736 1.000000 11 parental_haplotypes 734 174 58 734 1.000000 12 parental_haplotypes 174 482 480 482 1.000000 13 parental_haplotypes 174 480 480 58 1.000000 14 parental_haplotypes 670 480 480 721 1.000000 15 parental_haplotypes 480 46 480 734 1.000000 16 parental_haplotypes 494 480 494 494 1.000000 17 parental_haplotypes 538 174 494 32 1.000000 18 parental_haplotypes 174 494 480 161 0.681434 18 parental_haplotypes 494 174 160 481 0.318566 19 parental_haplotypes 49 480 734 174 1.000000 20 parental_haplotypes 734 174 735 480 1.000000 21 parental_haplotypes 481 734 160 750 1.000000 22 parental_haplotypes 30 482 670 670 1.000000 23 parental_haplotypes 494 480 494 480 1.000000 24 parental_haplotypes 538 494 721 480 1.000000 25 parental_haplotypes 174 721 735 32 1.000000 26 parental_haplotypes 174 494 734 720 1.000000 27 parental_haplotypes 734 174 480 538 1.000000 28 parental_haplotypes 174 480 174 494 1.000000 29 parental_haplotypes 718 481 718 494 1.000000 30 parental_haplotypes 484 480 721 174 1.000000 31 parental_haplotypes 174 30 750 174 1.000000 32 parental_haplotypes 721 174 494 58 1.000000 33 parental_haplotypes 734 174 480 720 1.000000 34 parental_haplotypes 734 721 705 721 1.000000 35 parental_haplotypes 734 734 224 58 1.000000 36 parental_haplotypes 174 538 174 734 1.000000 37 parental_haplotypes 480 160 494 750 1.000000 38 parental_haplotypes 720 480 484 480 1.000000 39 parental_haplotypes 718 49 721 58 1.000000 40 parental_haplotypes 174 480 481 544 1.000000 41 parental_haplotypes 538 481 721 718 1.000000 42 parental_haplotypes 480 174 481 174 1.000000 43 parental_haplotypes 494 30 732 734 1.000000 44 parental_haplotypes 30 32 705 480 1.000000 45 parental_haplotypes 734 480 734 480 1.000000 46 parental_haplotypes 480 49 482 174 1.000000 47 parental_haplotypes 705 481 734 480 1.000000 48 parental_haplotypes 734 480 494 46 1.000000 49 parental_haplotypes 721 736 721 705 1.000000 50 parental_haplotypes 494 174 30 174 1.000000 51 parental_haplotypes 174 734 538 46 1.000000 52 parental_haplotypes 730 494 734 174 1.000000 53 parental_haplotypes 481 160 46 734 1.000000 54 parental_haplotypes 721 494 58 494 1.000000 55 parental_haplotypes 58 174 544 482 1.000000 56 parental_haplotypes 538 58 705 58 1.000000 57 parental_haplotypes 558 480 30 494 1.000000 58 parental_haplotypes 737 160 480 174 1.000000 59 parental_haplotypes 734 481 721 174 0.857527 59 parental_haplotypes 721 494 734 161 0.142473 60 parental_haplotypes 174 58 30 480 1.000000 61 parental_haplotypes 721 481 734 58 1.000000 62 parental_haplotypes 734 735 734 480 1.000000 63 parental_haplotypes 161 734 734 174 0.074654 63 parental_haplotypes 721 174 174 734 0.925346 64 parental_haplotypes 224 673 174 224 1.000000 65 parental_haplotypes 718 174 544 480 1.000000 66 parental_haplotypes 494 734 62 174 1.000000 67 parental_haplotypes 480 174 494 720 0.450625 67 parental_haplotypes 494 160 480 734 0.549375 68 parental_haplotypes 718 32 484 174 1.000000 69 parental_haplotypes 705 734 480 160 1.000000 70 parental_haplotypes 538 480 494 161 1.000000 71 parental_haplotypes 538 480 174 480 1.000000 72 parental_haplotypes 538 32 705 481 1.000000 73 parental_haplotypes 721 62 480 735 1.000000 74 parental_haplotypes 494 494 480 480 1.000000 75 parental_haplotypes 482 734 160 174 1.000000 76 parental_haplotypes 174 58 174 494 1.000000 77 parental_haplotypes 480 161 538 544 1.000000 78 parental_haplotypes 538 174 480 480 1.000000 79 parental_haplotypes 175 481 58 494 1.000000 80 parental_haplotypes 480 480 734 720 1.000000 81 parental_haplotypes 705 174 494 174 1.000000 82 parental_haplotypes 734 482 718 480 1.000000 83 parental_haplotypes 734 734 734 494 1.000000 84 parental_haplotypes 494 32 718 174 1.000000 85 parental_haplotypes 174 174 174 174 1.000000 86 parental_haplotypes 480 494 734 160 0.617218 86 parental_haplotypes 494 480 720 174 0.382782 87 parental_haplotypes 538 58 480 174 1.000000 88 parental_haplotypes 705 734 480 494 1.000000 89 parental_haplotypes 494 480 161 480 1.000000 90 parental_haplotypes 30 734 494 174 1.000000 91 parental_haplotypes 734 160 494 174 1.000000 92 parental_haplotypes 718 670 721 734 1.000000 93 parental_haplotypes 128 480 174 46 1.000000 94 parental_haplotypes 718 160 718 736 1.000000 95 parental_haplotypes 174 734 736 494 1.000000 96 parental_haplotypes 705 32 484 750 1.000000 97 parental_haplotypes 174 494 30 174 1.000000 98 parental_haplotypes 734 160 734 662 1.000000 99 parental_haplotypes 480 544 494 481 1.000000 ALTree-v1.3.2/test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt000066400000000000000000000034331412112337500254040ustar00rootroot00000000000000M1 M2 Alleles1 Alleles2 NHAPLOTYPES dprime delta2 DFchisq chisquare 1 2 2 2 200 1.000000 0.334187 1 66.837 1 3 2 2 200 0.002933 0.000002 1 0.000 1 4 2 2 200 0.452991 0.080837 1 16.167 1 5 2 2 200 0.853249 0.671707 1 134.341 1 6 2 2 200 0.631761 0.318491 1 63.698 1 7 2 2 200 0.101981 0.005106 1 1.021 1 8 2 2 200 0.055953 0.003007 1 0.601 1 9 2 2 200 0.072351 0.002570 1 0.514 1 10 2 2 200 0.580537 0.087377 1 17.475 2 3 2 2 200 1.000000 0.074923 1 14.985 2 4 2 2 200 1.000000 0.196661 1 39.332 2 5 2 2 200 1.000000 0.362211 1 72.442 2 6 2 2 200 1.000000 0.266674 1 53.335 2 7 2 2 200 0.401341 0.109652 1 21.930 2 8 2 2 200 0.208701 0.022642 1 4.528 2 9 2 2 200 0.346168 0.081576 1 16.315 2 10 2 2 200 0.507389 0.022305 1 4.461 3 4 2 2 200 1.000000 0.380974 1 76.195 3 5 2 2 200 0.330493 0.022593 1 4.519 3 6 2 2 200 0.786724 0.173891 1 34.778 3 7 2 2 200 0.741935 0.060584 1 12.117 3 8 2 2 200 0.308756 0.022256 1 4.451 3 9 2 2 200 0.741935 0.060584 1 12.117 3 10 2 2 200 0.815668 0.025887 1 5.177 4 5 2 2 200 0.214403 0.019627 1 3.925 4 6 2 2 200 0.084552 0.005272 1 1.054 4 7 2 2 200 0.655661 0.124191 1 24.838 4 8 2 2 200 0.147089 0.008185 1 1.637 4 9 2 2 200 0.655661 0.124191 1 24.838 4 10 2 2 200 0.729701 0.054382 1 10.876 5 6 2 2 200 0.832816 0.510643 1 102.129 5 7 2 2 200 0.196932 0.020635 1 4.127 5 8 2 2 200 0.025432 0.000451 1 0.090 5 9 2 2 200 0.168563 0.015118 1 3.024 5 10 2 2 200 0.510800 0.062411 1 12.482 6 7 2 2 200 0.382004 0.057165 1 11.433 6 8 2 2 200 0.012390 0.000128 1 0.026 6 9 2 2 200 0.348248 0.047508 1 9.502 6 10 2 2 200 0.193641 0.012183 1 2.437 7 8 2 2 200 0.904762 0.625108 1 125.022 7 9 2 2 200 0.957333 0.916487 1 183.297 7 10 2 2 200 0.862857 0.263215 1 52.643 8 9 2 2 200 0.857143 0.561039 1 112.208 8 10 2 2 200 0.846939 0.193653 1 38.731 9 10 2 2 200 0.862857 0.263215 1 52.643 ALTree-v1.3.2/test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt000066400000000000000000000034321412112337500260100ustar00rootroot00000000000000M1 M2 Alleles1 Alleles2 NHAPLOTYPES dprime delta2 DFchisq chisquare 1 2 2 2 200 1.000000 0.176574 1 35.315 1 3 2 2 200 0.392097 0.010018 1 2.004 1 4 2 2 200 0.554676 0.071298 1 14.260 1 5 2 2 200 0.901961 0.662078 1 132.416 1 6 2 2 200 0.628731 0.354774 1 70.955 1 7 2 2 200 0.210021 0.012016 1 2.403 1 8 2 2 200 0.252254 0.021605 1 4.321 1 9 2 2 200 0.204515 0.010095 1 2.019 1 10 2 2 200 0.204319 0.017659 1 3.532 2 3 2 2 200 1.000000 0.121928 1 24.386 2 4 2 2 200 1.000000 0.433623 1 86.725 2 5 2 2 200 1.000000 0.143701 1 28.740 2 6 2 2 200 1.000000 0.196745 1 39.349 2 7 2 2 200 0.497517 0.160440 1 32.088 2 8 2 2 200 0.439335 0.100379 1 20.076 2 9 2 2 200 0.377665 0.104344 1 20.869 2 10 2 2 200 0.053484 0.000647 1 0.129 3 4 2 2 200 1.000000 0.281184 1 56.237 3 5 2 2 200 0.285714 0.004329 1 0.866 3 6 2 2 200 0.386385 0.092521 1 18.504 3 7 2 2 200 0.209726 0.008274 1 1.655 3 8 2 2 200 0.398496 0.030477 1 6.095 3 9 2 2 200 0.155844 0.004048 1 0.810 3 10 2 2 200 0.503106 0.006977 1 1.395 4 5 2 2 200 0.534884 0.053958 1 10.792 4 6 2 2 200 0.002408 0.000003 1 0.001 4 7 2 2 200 0.356991 0.085257 1 17.051 4 8 2 2 200 0.180721 0.027232 1 5.446 4 9 2 2 200 0.339576 0.068349 1 13.670 4 10 2 2 200 0.411136 0.016570 1 3.314 5 6 2 2 200 0.899329 0.590736 1 118.147 5 7 2 2 200 0.444115 0.043727 1 8.745 5 8 2 2 200 0.454732 0.057137 1 11.427 5 9 2 2 200 0.463032 0.042114 1 8.423 5 10 2 2 200 0.184783 0.017747 1 3.549 6 7 2 2 200 0.522293 0.082801 1 16.560 6 8 2 2 200 0.161508 0.009868 1 1.974 6 9 2 2 200 0.534286 0.076771 1 15.354 6 10 2 2 200 0.182959 0.012708 1 2.542 7 8 2 2 200 0.977604 0.766800 1 153.360 7 9 2 2 200 0.978559 0.848432 1 169.686 7 10 2 2 200 0.835931 0.102394 1 20.479 8 9 2 2 200 0.976077 0.677278 1 135.456 8 10 2 2 200 0.816934 0.078463 1 15.693 9 10 2 2 200 0.844720 0.118009 1 23.602 ALTree-v1.3.2/test/create_file/phy-paml_file/nb_cas_control.txt000066400000000000000000000010151412112337500245100ustar00rootroot00000000000000H019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 ALTree-v1.3.2/test/create_file/phy-paml_file/trio.fmh000066400000000000000000000107341412112337500224430ustar00rootroot00000000000000File fam19_0 passed to main function. command: /home/cbardel/FAMHAP/FAMHAP15/famhap15 fam19_0 trio.fmh dp P Input seems to have no column headings. Program proceeds. Infile has 26 columns. It is assumed to have 10 marker(s). 300 individuals were read. 100 families were read. Mendel Check successful. No distortions encountered. The following loci were selected: 1 2 3 4 5 6 7 8 9 10 Only families fully genotyped at these loci will be included into the frequency estimation. independent case chromosomes: 200 control chromosomes: 200 Internal Recoding. CODING MARKER 1. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 2. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 3. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 4. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 5. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 6. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 7. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 8. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 9. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 CODING MARKER 10. Allele 0 Code 0 Allele 1 Code 1 Allele 2 Code 2 HAPLOTYPE ESTIMATION WITH DOUBLED PARAMETER SET: Selected loci: 1 2 3 4 5 6 7 8 9 10 Number of alleles at the loci: 2 2 2 2 2 2 2 2 2 2 Haplotype parameters at beginning (not doubled): 1024 Loglikelihood -1105.715154 9 iterations were performed. 1 1 1 1 1 2 2 2 2 1 HaploiD: 30 FreqAff 0.045000 FreqUnaff 0.015000 1 1 1 1 2 1 1 1 1 1 HaploiD: 32 FreqAff 0.000000 FreqUnaff 0.040000 1 1 1 1 2 1 2 2 2 1 HaploiD: 46 FreqAff 0.005000 FreqUnaff 0.025000 1 1 1 1 2 2 1 1 1 2 HaploiD: 49 FreqAff 0.005000 FreqUnaff 0.010000 1 1 1 1 2 2 2 1 2 1 HaploiD: 58 FreqAff 0.025000 FreqUnaff 0.050000 1 1 1 1 2 2 2 2 2 1 HaploiD: 62 FreqAff 0.005000 FreqUnaff 0.010000 1 1 2 1 1 1 1 1 1 1 HaploiD: 128 FreqAff 0.010000 FreqUnaff 0.000000 1 1 2 1 2 1 1 1 1 1 HaploiD: 160 FreqAff 0.011593 FreqUnaff 0.040833 1 1 2 1 2 1 1 1 1 2 HaploiD: 161 FreqAff 0.005373 FreqUnaff 0.014119 1 1 2 1 2 1 2 2 2 1 HaploiD: 174 FreqAff 0.128034 FreqUnaff 0.180048 1 1 2 1 2 1 2 2 2 2 HaploiD: 175 FreqAff 0.005000 FreqUnaff 0.000000 1 1 2 2 2 1 1 1 1 1 HaploiD: 224 FreqAff 0.010000 FreqUnaff 0.010000 1 1 2 2 2 1 2 2 1 1 HaploiD: 236 FreqAff 0.005000 FreqUnaff 0.005000 1 2 2 2 2 1 1 1 1 1 HaploiD: 480 FreqAff 0.126493 FreqUnaff 0.191914 1 2 2 2 2 1 1 1 1 2 HaploiD: 481 FreqAff 0.025000 FreqUnaff 0.045881 1 2 2 2 2 1 1 1 2 1 HaploiD: 482 FreqAff 0.010000 FreqUnaff 0.030000 1 2 2 2 2 1 1 2 1 1 HaploiD: 484 FreqAff 0.020000 FreqUnaff 0.000000 1 2 2 2 2 1 2 2 2 1 HaploiD: 494 FreqAff 0.108507 FreqUnaff 0.097205 2 1 1 1 1 2 2 1 2 1 HaploiD: 538 FreqAff 0.055000 FreqUnaff 0.010000 2 1 1 1 2 1 1 1 1 1 HaploiD: 544 FreqAff 0.010000 FreqUnaff 0.015000 2 1 1 1 2 1 2 2 2 1 HaploiD: 558 FreqAff 0.005000 FreqUnaff 0.000000 2 1 2 1 1 2 1 2 2 1 HaploiD: 662 FreqAff 0.000000 FreqUnaff 0.005000 2 1 2 1 1 2 2 2 2 1 HaploiD: 670 FreqAff 0.010000 FreqUnaff 0.010000 2 1 2 1 2 1 1 1 1 2 HaploiD: 673 FreqAff 0.000000 FreqUnaff 0.005000 2 1 2 2 1 1 1 1 1 2 HaploiD: 705 FreqAff 0.045000 FreqUnaff 0.005000 2 1 2 2 1 1 2 2 2 1 HaploiD: 718 FreqAff 0.055000 FreqUnaff 0.010000 2 1 2 2 1 2 1 1 1 1 HaploiD: 720 FreqAff 0.011914 FreqUnaff 0.017253 2 1 2 2 1 2 1 1 1 2 HaploiD: 721 FreqAff 0.074627 FreqUnaff 0.025000 2 1 2 2 1 2 2 1 2 1 HaploiD: 730 FreqAff 0.005000 FreqUnaff 0.000000 2 1 2 2 1 2 2 2 1 1 HaploiD: 732 FreqAff 0.005000 FreqUnaff 0.000000 2 1 2 2 1 2 2 2 2 1 HaploiD: 734 FreqAff 0.143459 FreqUnaff 0.092747 2 1 2 2 1 2 2 2 2 2 HaploiD: 735 FreqAff 0.010000 FreqUnaff 0.010000 2 1 2 2 2 1 1 1 1 1 HaploiD: 736 FreqAff 0.005000 FreqUnaff 0.015000 2 1 2 2 2 1 1 1 1 2 HaploiD: 737 FreqAff 0.005000 FreqUnaff 0.000000 2 1 2 2 2 1 2 2 2 1 HaploiD: 750 FreqAff 0.010000 FreqUnaff 0.015000 200 independent case chromosomes could be incorporated into the analysis. 200 independent control chromosomes could be incorporated into the analysis. The following families could be incorporated into the estimation: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 All families could be incorporated. NUMBER OF PARAMETERS DIFFERENT FROM ZERO-1 = 34. Total number of haplotype explanations:290 ALTree-v1.3.2/test/create_file/phy-paml_file/trio.phy000066400000000000000000000014111412112337500224610ustar00rootroot00000000000000 36 11 H019 2122121111 H026 2111212221 H004 2122112221 H020 1222211112 H034 2122211112 H027 1111221112 H023 1111212221 H016 2121122221 H002 1111122221 H015 1222211121 H006 1222212221 H001 1222211111 H010 1121211112 H028 1222211211 H024 2122122211 H017 1111211111 H009 1111222121 H007 1121212221 H033 2121211112 H008 2122122221 H029 2122211111 H003 1121111111 H035 1121212222 H013 2122121112 H032 2121121221 H025 2122212221 H021 2111122121 H030 1122212211 H031 2122122121 H012 1111222221 H005 2122122222 H011 1121211111 H022 2122111112 H014 2111211111 H018 1122211111 ALTree-v1.3.2/test/create_file/phy-paml_file/trio.prephy000066400000000000000000000014111412112337500231700ustar00rootroot00000000000000 36 11 H019 2122121111 H026 2111212221 H004 2122112221 H020 1222211112 H034 2122211112 H027 1111221112 H023 1111212221 H016 2121122221 H002 1111122221 H015 1222211121 H006 1222212221 H001 1222211111 H010 1121211112 H028 1222211211 H024 2122122211 H017 1111211111 H009 1111222121 H007 1121212221 H033 2121211112 H008 2122122221 H029 2122211111 H003 1121111111 H035 1121212222 H013 2122121112 H032 2121121221 H025 2122212221 H021 2111122121 H030 1122212211 H031 2122122121 H012 1111222221 H005 2122122222 H011 1121211111 H022 2122111112 H014 2111211111 H018 1122211111 ALTree-v1.3.2/test/paml/000077500000000000000000000000001412112337500147265ustar00rootroot00000000000000ALTree-v1.3.2/test/paml/tree_building_using_phyML/000077500000000000000000000000001412112337500220605ustar00rootroot00000000000000ALTree-v1.3.2/test/paml/tree_building_using_phyML/run_phyML000077500000000000000000000002511412112337500237210ustar00rootroot00000000000000#!/bin/sh # In this example, we choose the substitution model GTR (option M # selected three times). For the other options, we keep the default # values phyml_linux ALTree-v1.3.2/test/paml/tree_building_using_phyML/trio2.phy000066400000000000000000000014361412112337500236450ustar00rootroot00000000000000 36 10 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC ALTree-v1.3.2/test/paml/tree_building_using_phyML/trio2.phy_phyml_lk.txt000066400000000000000000000000141412112337500263510ustar00rootroot00000000000000-125.922930 ALTree-v1.3.2/test/paml/tree_building_using_phyML/trio2.phy_phyml_stat.txt000066400000000000000000000015171412112337500267270ustar00rootroot00000000000000 - PHYML v2.4.4 - . Sequence file : [trio2.phy] . Model of nucleotides substitution : GTR . Initial tree : [BIONJ] . Number of taxa : 36 . Likelihood : loglk = -125.92293 . Discrete gamma model : No . Nucleotides frequencies : - f(A)= 0.00000 - f(C)= 0.53889 - f(G)= 0.46111 - f(T)= 0.00000 . GTR relative rate parameters : A <-> C 1.00000 A <-> G 1.00000 A <-> T 1.00000 C <-> G 1.00000 C <-> T 1.00000 G <-> T 1.0 (fixed) . Instantaneous rate matrix : [A---------C---------G---------T------] -2.01217 1.08434 0.92784 0.00000 0.00000 -0.92784 0.92784 0.00000 0.00000 1.08434 -1.08434 0.00000 0.00000 1.08434 0.92784 -2.01217 eg., the instantaneous rate of change from 'C' to 'A' is 0.00000 x 1.00000 = 0.00000 . Time used 0h0m8s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% ALTree-v1.3.2/test/paml/tree_building_using_phyML/trio2.phy_phyml_tree.txt000066400000000000000000000015461412112337500267150ustar00rootroot00000000000000(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896); ALTree-v1.3.2/test/paml/unrooted_absent/000077500000000000000000000000001412112337500201215ustar00rootroot00000000000000ALTree-v1.3.2/test/paml/unrooted_absent/association/000077500000000000000000000000001412112337500224355ustar00rootroot00000000000000ALTree-v1.3.2/test/paml/unrooted_absent/association/1_trio_ML.asso000066400000000000000000000127621412112337500251210ustar00rootroot00000000000000 /----* H006 case/control:23/19 | Site: 2 Sens: C-->G | /----* H031 case/control:1/0 | | Site: 8 Sens: G-->C | |----* H005 case/control:2/2 | | Site: 10 Sens: C-->G | | /----* H032 case/control:0/1 | | | Site: 7 Sens: G-->C | |----* 68 case/control:2/3 | | | Site: 4 Sens: G-->C | | \----* H016 case/control:2/2 | /----* 64+(65+(66+(67))) case/control:34/24 | | | Site: 6 Sens: C-->G | | |----* H008 case/control:28/19 | | \----* H024 case/control:1/0 | | Site: 9 Sens: G-->C | /----* 63 case/control:45/26 | | | Site: 5 Sens: G-->C | | \----* H004 case/control:11/2 |----* 62 case/control:47/29 | | Site: 1 Sens: C-->G | \----* H025 case/control:2/3 -----* 60+(61)+(42) case/control:200/200 | | [0] ddl=3 chi2=6.69 p_value_chi2=0.0824 | [1] ddl=7 chi2=11.30 p_value_chi2=0.102 | [2] ddl=11 chi2=24.02 p_value_chi2=0.007 | [3] ddl=20 chi2=39.11 p_value_chi2=0.001 | [4] ddl=24 chi2=54.71 p_value_chi2=0.001 | [5] ddl=28 chi2=63.21 p_value_chi2=0 | [6] ddl=32 chi2=65.94 p_value_chi2=0 | [7] ddl=33 chi2=67.18 p_value_chi2=0 | [8] ddl=34 chi2=68.34 p_value_chi2=0 | /----* H010 case/control:1/3 | /----* 53 case/control:1/4 | | | Site: 10 Sens: C-->G | | \----* H033 case/control:0/1 | | Site: 1 Sens: C-->G | | /----* H027 case/control:1/2 | | | Site: 6 Sens: C-->G | | | Site: 10 Sens: C-->G | | |----* H017 case/control:0/8 | |----* 54+(55) case/control:3/13 | | | Site: 3 Sens: G-->C | | \----* H014 case/control:2/3 | | Site: 1 Sens: C-->G | /----* 50+(51+(52)) case/control:9/25 | | | Site: 4 Sens: G-->C | | |----* H011 case/control:3/8 | | \----* H003 case/control:2/0 | | Site: 5 Sens: G-->C | |----* H018 case/control:2/2 | /----* 48+(49) case/control:40/39 | | | Site: 2 Sens: G-->C | | | /----* H022 case/control:9/1 | | | /----* 58 case/control:27/9 | | | | | Site: 5 Sens: G-->C | | | | | /----* H013 case/control:15/5 | | | | \----* 59 case/control:18/8 | | | | | Site: 6 Sens: C-->G | | | | \----* H019 case/control:3/3 | | | | Site: 10 Sens: G-->C | | | /----* 57 case/control:28/9 | | | | | Site: 10 Sens: C-->G | | | | \----* H034 case/control:1/0 | | \----* 56 case/control:29/12 | | | Site: 1 Sens: C-->G | | \----* H029 case/control:1/3 | |----* H020 case/control:5/9 | | Site: 10 Sens: C-->G | /----* 45+(46+(47)) case/control:71/93 | | | Site: 8 Sens: G-->C | | |----* H001 case/control:24/39 | | \----* H015 case/control:2/6 | | Site: 9 Sens: C-->G | /----* 44 case/control:75/93 | | | Site: 7 Sens: G-->C | | | Site: 2 Sens: C-->G | | \----* H028 case/control:4/0 |----* 43 case/control:76/94 | | Site: 9 Sens: G-->C | \----* H030 case/control:1/1 | /----* H035 case/control:1/0 | | Site: 10 Sens: C-->G | |----* H007 case/control:25/36 \----* 41+(40) case/control:54/58 | Site: 4 Sens: G-->C | /----* H026 case/control:1/0 | | Site: 1 Sens: C-->G | |----* H023 case/control:1/5 \----* 39+(69) case/control:28/22 | Site: 3 Sens: G-->C | /----* H012 case/control:1/2 | | /----* H021 case/control:11/2 | | | Site: 8 Sens: G-->C | | | Site: 1 Sens: C-->G | |----* 70 case/control:20/5 | | | Site: 5 Sens: G-->C | | \----* H002 case/control:9/3 \----* 38+(37) case/control:26/17 | Site: 6 Sens: C-->G \----* H009 case/control:5/10 Site: 8 Sens: G-->C Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 ALTree-v1.3.2/test/paml/unrooted_absent/association/2base.t000066400000000000000000000131431412112337500236200ustar00rootroot00000000000000 36 H019 H026 9.0000 H004 nan nan H020 9.0000 9.0000 9.0000 H034 nan 9.0000 9.0000 nan H027 9.0000 9.0000 9.0000 nan nan H023 9.0000 nan nan 9.0000 9.0000 9.0000 H016 nan nan nan 9.0000 9.0000 9.0000 nan H002 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan H015 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 H006 9.0000 nan nan nan 9.0000 9.0000 nan 9.0000 9.0000 nan H001 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan nan H010 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan H028 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan nan nan nan H024 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 H017 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 H009 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan H007 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan H033 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 nan 9.0000 9.0000 H008 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan 9.0000 H029 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan 9.0000 H003 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan 9.0000 nan H035 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 H013 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 H032 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan 9.0000 nan 9.0000 nan 9.0000 nan H025 9.0000 nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 nan H021 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 H030 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan nan nan nan nan 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 H031 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 nan nan nan nan 9.0000 H012 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan 9.0000 H005 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 H011 nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 H022 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan H014 nan nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan H018 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan OUTG 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan ALTree-v1.3.2/test/paml/unrooted_absent/association/baseml.ctl000066400000000000000000000032231412112337500244040ustar00rootroot00000000000000 seqfile = trio2.phy treefile = trio2.phy_phyml_tree.txt outfile = mlb * main result file noisy = 9 * 0,1,2,3: how much rubbish on the screen verbose = 1 * 1: detailed output, 0: concise output runmode = 0 * 0: user tree; 1: semi-automatic; 2: automatic * 3: StepwiseAddition; (4,5):PerturbationNNI model = 7 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85 * 5:T92, 6:TN93, 7:REV, 8:UNREST, 9:REVu; 10:UNRESTu Mgene = 0 * 0:rates, 1:separate; 2:diff pi, 3:diff kapa, 4:all diff * ndata = 1 clock = 1 * 0:no clock, 1:clock; 2:local clock; 3:CombinedAnalysis fix_kappa = 0 * 0: estimate kappa; 1: fix kappa at value below kappa = 5 * initial or fixed kappa fix_alpha = 1 * 0: estimate alpha; 1: fix alpha at value below alpha = 0 * initial or fixed alpha, 0:infinity (constant rate) Malpha = 0 * 1: different alpha's for genes, 0: one alpha ncatG = 5 * # of categories in the dG, AdG, or nparK models of rates nparK = 0 * rate-class models. 1:rK, 2:rK&fK, 3:rK&MK(1/K), 4:rK&MK nhomo = 0 * 0 & 1: homogeneous, 2: kappa for branches, 3: N1, 4: N2 getSE = 0 * 0: don't want them, 1: want S.E.s of estimates RateAncestor = 1 * (0,1,2): rates (alpha>0) or ancestral states Small_Diff = 7e-6 cleandata = 0 * remove sites with ambiguity data (1:yes, 0:no)? * icode = 0 * (with RateAncestor=1. try "GC" in data,model=4,Mgene=4) * fix_blength = -1 * 0: ignore, -1: random, 1: initial, 2: fixed method = 0 * 0: simultaneous; 1: one branch at a time ALTree-v1.3.2/test/paml/unrooted_absent/association/lnf000066400000000000000000000015161412112337500231420ustar00rootroot00000000000000 -1 10 10 1 1 1 -21.7701316508 0.0000 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC 2 1 -13.4855220119 0.0000 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC 3 1 -11.8101938263 0.0001 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG 4 1 -15.5093284894 0.0000 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG 5 1 -15.9586997510 0.0000 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG 6 1 -18.0353689751 0.0000 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC 7 1 -11.7888575463 0.0001 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG 8 1 -14.6248990790 0.0000 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG 9 1 -13.6573284377 0.0000 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG 10 1 -24.9555331769 0.0000 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCCALTree-v1.3.2/test/paml/unrooted_absent/association/mlb000066400000000000000000000512451412112337500231410ustar00rootroot00000000000000 seed used = 30455833 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC BASEML (in paml 3.14, January 2004) trio2.phy REV Global clock ns = 36 ls = 10 # site patterns = 10 1 1 1 1 1 1 1 1 1 1 H019 GCGGCGCCCC H026 ..CCGCGGG. H004 .....CGGG. H020 CG..GC...G H034 ....GC...G H027 C.CCG....G H023 C.CCGCGGG. H016 ...C..GGG. H002 C.CC..GGG. H015 CG..GC..G. H006 CG..GCGGG. H001 CG..GC.... H010 C..CGC...G H028 CG..GC.G.. H024 ......GG.. H017 C.CCGC.... H009 C.CCG.G.G. H007 C..CGCGGG. H033 ...CGC...G H008 ......GGG. H029 ....GC.... H003 C..C.C.... H035 C..CGCGGGG H013 .........G H032 ...C...GG. H025 ....GCGGG. H021 ..CC..G.G. H030 C...GCGG.. H031 ......G.G. H012 C.CCG.GGG. H005 ......GGGG H011 C..CGC.... H022 .....C...G H014 ..CCGC.... H018 C...GC.... OUTG C...GCGGG. Frequencies.. T C A G H019 0.0000 0.6000 0.0000 0.4000 H026 0.0000 0.5000 0.0000 0.5000 H004 0.0000 0.4000 0.0000 0.6000 H020 0.0000 0.5000 0.0000 0.5000 H034 0.0000 0.5000 0.0000 0.5000 H027 0.0000 0.7000 0.0000 0.3000 H023 0.0000 0.6000 0.0000 0.4000 H016 0.0000 0.4000 0.0000 0.6000 H002 0.0000 0.6000 0.0000 0.4000 H015 0.0000 0.5000 0.0000 0.5000 H006 0.0000 0.3000 0.0000 0.7000 H001 0.0000 0.6000 0.0000 0.4000 H010 0.0000 0.7000 0.0000 0.3000 H028 0.0000 0.5000 0.0000 0.5000 H024 0.0000 0.4000 0.0000 0.6000 H017 0.0000 0.9000 0.0000 0.1000 H009 0.0000 0.6000 0.0000 0.4000 H007 0.0000 0.5000 0.0000 0.5000 H033 0.0000 0.6000 0.0000 0.4000 H008 0.0000 0.3000 0.0000 0.7000 H029 0.0000 0.6000 0.0000 0.4000 H003 0.0000 0.9000 0.0000 0.1000 H035 0.0000 0.4000 0.0000 0.6000 H013 0.0000 0.5000 0.0000 0.5000 H032 0.0000 0.5000 0.0000 0.5000 H025 0.0000 0.3000 0.0000 0.7000 H021 0.0000 0.6000 0.0000 0.4000 H030 0.0000 0.5000 0.0000 0.5000 H031 0.0000 0.4000 0.0000 0.6000 H012 0.0000 0.5000 0.0000 0.5000 H005 0.0000 0.2000 0.0000 0.8000 H011 0.0000 0.8000 0.0000 0.2000 H022 0.0000 0.6000 0.0000 0.4000 H014 0.0000 0.8000 0.0000 0.2000 H018 0.0000 0.7000 0.0000 0.3000 OUTG 0.0000 0.4000 0.0000 0.6000 Average 0.0000 0.5389 0.0000 0.4611 # constant sites: 0 (0.00%) ln Lmax (unconstrained) = -23.025851 Distances: TN93 (kappa) (alpha set at 0.00) This matrix is not used in later m.l. analysis. H019 H026 9.0000( 0.0000) H004 nan(999.0000) nan(999.0000) H020 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H034 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H027 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H023 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H016 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H002 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H015 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H006 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H001 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H010 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H028 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H024 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H017 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H009 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H007 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H033 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H008 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H029 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H003 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H035 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H013 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H032 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H025 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H021 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H030 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H031 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H012 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H005 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H011 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H022 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H014 nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H018 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) OUTG 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) TREE # 1: (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); MP score: 38.00 lnL(ntime: 34 np: 39): -161.595863 +0.000000 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 0.32909 0.32909 0.27647 0.23931 0.23931 0.21195 0.19110 0.14247 0.12649 0.12649 0.12649 0.11202 0.11202 0.08672 0.08672 0.08672 0.03516 0.05787 0.05787 0.07949 0.05674 0.03539 0.01646 0.21191 0.21191 0.14045 0.09884 0.06899 0.06899 0.06899 0.06899 0.02948 0.07806 0.13263 1.00000 0.21839 0.24112 0.21870 0.24735 tree length = 4.99889 (((((((((((((((((H010, H033), (H027, (H017, H014))), H011), H003), H018), (((H022, (H013, H019)), H034), H029)), H020), H001), H015), H028), H030), ((H006, ((((((H031, H005), (H032, H016)), H008), H024), H004), H025)), OUTG)), H035), H007), (H026, H023)), H012), (H021, H002), H009); (((((((((((((((((H010: 0.035163, H033: 0.035163): 0.051559, (H027: 0.057874, (H017: 0.057874, H014: 0.057874): 0.000000): 0.028848): 0.000000, H011: 0.086722): 0.000000, H003: 0.086722): 0.025300, H018: 0.112022): 0.000000, (((H022: 0.035387, (H013: 0.016460, H019: 0.016460): 0.018928): 0.021351, H034: 0.056739): 0.022749, H029: 0.079488): 0.032534): 0.014469, H020: 0.126491): 0.000000, H001: 0.126491): 0.000000, H015: 0.126491): 0.015976, H028: 0.142467): 0.048638, H030: 0.191105): 0.020845, ((H006: 0.211909, ((((((H031: 0.068986, H005: 0.068986): 0.000000, (H032: 0.029484, H016: 0.029484): 0.039502): 0.000000, H008: 0.068986): 0.000000, H024: 0.068986): 0.029849, H004: 0.098835): 0.041617, H025: 0.140453): 0.071456): 0.000000, OUTG: 0.211909): 0.000041): 0.027363, H035: 0.239313): 0.000000, H007: 0.239313): 0.037161, (H026: 0.078062, H023: 0.078062): 0.198413): 0.052620, H012: 0.329094): 0.000000, (H021: 0.132628, H002: 0.132628): 0.196467, H009: 0.329095); Detailed output identifying parameters Parameters in the rate matrix (REV) (Yang 1994 J Mol Evol 39:105-111): Rate parameters: 1.00000 0.21839 0.24112 0.21870 0.24735 Base frequencies: 0.00000 0.53889 0.00000 0.46111 Rate matrix Q, Average Ts/Tv = 0.0000 -5.288293 4.383835 0.000000 0.904458 0.000000 -0.927835 0.000000 0.927835 0.000000 0.958761 -4.709878 3.751117 0.000000 1.084337 0.000000 -1.084337 check convergence.. ALTree-v1.3.2/test/paml/unrooted_absent/association/nb_cas_control.txt000066400000000000000000000010151412112337500261600ustar00rootroot00000000000000H019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 ALTree-v1.3.2/test/paml/unrooted_absent/association/rst000066400000000000000000000310751412112337500231760ustar00rootroot00000000000000Supplemental results for BASEML seqf: trio2.phy treef: trio2.phy_phyml_tree.txt TREE # 1 Ancestral reconstruction by BASEML. (((((((((((((((((H010: 0.035163, H033: 0.035163): 0.051559, (H027: 0.057874, (H017: 0.057874, H014: 0.057874): 0.000000): 0.028848): 0.000000, H011: 0.086722): 0.000000, H003: 0.086722): 0.025300, H018: 0.112022): 0.000000, (((H022: 0.035387, (H013: 0.016460, H019: 0.016460): 0.018928): 0.021351, H034: 0.056739): 0.022749, H029: 0.079488): 0.032534): 0.014469, H020: 0.126491): 0.000000, H001: 0.126491): 0.000000, H015: 0.126491): 0.015976, H028: 0.142467): 0.048638, H030: 0.191105): 0.020845, ((H006: 0.211909, ((((((H031: 0.068986, H005: 0.068986): 0.000000, (H032: 0.029484, H016: 0.029484): 0.039502): 0.000000, H008: 0.068986): 0.000000, H024: 0.068986): 0.029849, H004: 0.098835): 0.041617, H025: 0.140453): 0.071456): 0.000000, OUTG: 0.211909): 0.000041): 0.027363, H035: 0.239313): 0.000000, H007: 0.239313): 0.037161, (H026: 0.078062, H023: 0.078062): 0.198413): 0.052620, H012: 0.329094): 0.000000, (H021: 0.132628, H002: 0.132628): 0.196467, H009: 0.329095); (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 tree with node labels for Rod Page's TreeView (((((((((((((((((13_H010: 0.035163, 19_H033: 0.035163) 53 : 0.051559, (6_H027: 0.057874, (16_H017: 0.057874, 34_H014: 0.057874) 55 : 0.000000) 54 : 0.028848) 52 : 0.000000, 32_H011: 0.086722) 51 : 0.000000, 22_H003: 0.086722) 50 : 0.025300, 35_H018: 0.112022) 49 : 0.000000, (((33_H022: 0.035387, (24_H013: 0.016460, 1_H019: 0.016460) 59 : 0.018928) 58 : 0.021351, 5_H034: 0.056739) 57 : 0.022749, 21_H029: 0.079488) 56 : 0.032534) 48 : 0.014469, 4_H020: 0.126491) 47 : 0.000000, 12_H001: 0.126491) 46 : 0.000000, 10_H015: 0.126491) 45 : 0.015976, 14_H028: 0.142467) 44 : 0.048638, 28_H030: 0.191105) 43 : 0.020845, ((11_H006: 0.211909, ((((((29_H031: 0.068986, 31_H005: 0.068986) 67 : 0.000000, (25_H032: 0.029484, 8_H016: 0.029484) 68 : 0.039502) 66 : 0.000000, 20_H008: 0.068986) 65 : 0.000000, 15_H024: 0.068986) 64 : 0.029849, 3_H004: 0.098835) 63 : 0.041617, 26_H025: 0.140453) 62 : 0.071456) 61 : 0.000000, 36_OUTG: 0.211909) 60 : 0.000041) 42 : 0.027363, 23_H035: 0.239313) 41 : 0.000000, 18_H007: 0.239313) 40 : 0.037161, (2_H026: 0.078062, 7_H023: 0.078062) 69 : 0.198413) 39 : 0.052620, 30_H012: 0.329094) 38 : 0.000000, (27_H021: 0.132628, 9_H002: 0.132628) 70 : 0.196467, 17_H009: 0.329095) 37 ; Nodes 37 to 70 are ancestral (1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650). Prob of best character at each node, listed by site Site Freq Data: 1 1 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC: C(0.989) C(0.989) C(0.993) C(0.999) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(0.948) C(0.998) C(0.998) G(0.948) G(0.997) G(1.000) G(1.000) C(0.999) C(0.999) G(0.924) G(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.824) C(0.824) 2 1 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC: C(0.998) C(0.998) C(0.999) C(0.999) C(0.999) C(0.992) C(0.932) G(0.758) G(0.787) G(0.787) G(0.787) C(0.994) C(0.994) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.992) C(0.992) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.996) 3 1 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG: C(0.908) C(0.908) C(0.703) G(0.975) G(0.975) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.992) C(0.992) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.990) C(0.989) 4 1 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG: C(0.989) C(0.989) C(0.967) C(0.892) C(0.892) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(0.998) G(0.998) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.997) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.977) C(0.998) C(0.996) 5 1 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG: G(0.974) G(0.974) G(0.996) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.994) G(0.943) C(0.969) C(1.000) G(1.000) G(1.000) G(0.826) C(0.942) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.999) C(0.916) 6 1 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC: G(0.757) G(0.757) C(0.896) C(0.995) C(0.995) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.998) C(0.998) C(1.000) C(0.997) C(0.956) G(0.987) C(1.000) C(1.000) C(0.968) C(0.844) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.996) G(0.978) 7 1 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG: G(0.999) G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(0.932) C(0.956) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.964) G(0.999) G(0.997) 8 1 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG: G(0.949) G(0.949) G(0.993) G(1.000) G(1.000) G(1.000) G(0.978) G(0.696) C(0.998) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.809) 9 1 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG: G(0.999) G(0.999) G(0.999) G(1.000) G(1.000) G(0.997) C(0.670) C(0.982) C(0.998) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.997) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.997) 10 1 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC: C(0.998) C(0.998) C(0.999) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(0.999) G(0.978) C(0.998) C(0.998) C(0.902) G(0.903) G(0.942) G(0.927) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.996) Summary of changes along branches. Check root for directions of change. Branch 1: 37..38 Branch 2: 38..39 6 G 0.757 -> C 0.896 Branch 3: 39..40 3 C 0.703 -> G 0.975 Branch 4: 40..41 Branch 5: 41..42 4 C 0.892 -> G 0.997 Branch 6: 42..43 9 G 0.997 -> C 0.670 Branch 7: 43..44 2 C 0.932 -> G 0.758 7 G 0.932 -> C 0.956 Branch 8: 44..45 8 G 0.696 -> C 0.998 Branch 9: 45..46 Branch 10: 46..47 Branch 11: 47..48 2 G 0.787 -> C 0.994 Branch 12: 48..49 Branch 13: 49..50 4 G 0.998 -> C 0.999 Branch 14: 50..51 Branch 15: 51..52 Branch 16: 52..53 10 C 0.999 -> G 0.978 Branch 17: 53..13 (H010) Branch 18: 53..19 (H033) 1 C 0.948 -> G Branch 19: 52..54 3 G 1.000 -> C 0.992 Branch 20: 54..6 (H027) 6 C 0.998 -> G 10 C 0.998 -> G Branch 21: 54..55 Branch 22: 55..16 (H017) Branch 23: 55..34 (H014) 1 C 0.998 -> G Branch 24: 51..32 (H011) Branch 25: 50..22 (H003) 5 G 1.000 -> C Branch 26: 49..35 (H018) Branch 27: 48..56 1 C 0.999 -> G 0.948 Branch 28: 56..57 10 C 0.902 -> G 0.903 Branch 29: 57..58 5 G 0.943 -> C 0.969 Branch 30: 58..33 (H022) Branch 31: 58..59 6 C 0.956 -> G 0.987 Branch 32: 59..24 (H013) Branch 33: 59..1 (H019) 10 G 0.927 -> C Branch 34: 57..5 (H034) Branch 35: 56..21 (H029) Branch 36: 47..4 (H020) 10 C 1.000 -> G Branch 37: 46..12 (H001) Branch 38: 45..10 (H015) 9 C 0.998 -> G Branch 39: 44..14 (H028) Branch 40: 43..28 (H030) Branch 41: 42..60 Branch 42: 60..61 Branch 43: 61..11 (H006) 2 C 0.992 -> G Branch 44: 61..62 1 C 0.999 -> G 0.924 Branch 45: 62..63 5 G 0.826 -> C 0.942 Branch 46: 63..64 6 C 0.844 -> G 1.000 Branch 47: 64..65 Branch 48: 65..66 Branch 49: 66..67 Branch 50: 67..29 (H031) 8 G 1.000 -> C Branch 51: 67..31 (H005) 10 C 1.000 -> G Branch 52: 66..68 4 G 1.000 -> C 0.977 Branch 53: 68..25 (H032) 7 G 0.964 -> C Branch 54: 68..8 (H016) Branch 55: 65..20 (H008) Branch 56: 64..15 (H024) 9 G 1.000 -> C Branch 57: 63..3 (H004) Branch 58: 62..26 (H025) Branch 59: 60..36 (OUTG) Branch 60: 41..23 (H035) 10 C 0.998 -> G Branch 61: 40..18 (H007) Branch 62: 39..69 Branch 63: 69..2 (H026) 1 C 0.824 -> G Branch 64: 69..7 (H023) Branch 65: 38..30 (H012) Branch 66: 37..70 5 G 0.974 -> C 0.916 Branch 67: 70..27 (H021) 1 C 0.824 -> G 8 G 0.809 -> C Branch 68: 70..9 (H002) Branch 69: 37..17 (H009) 8 G 0.949 -> C List of extant and reconstructed sequences H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC node #37 CCCCGGGGGC node #38 CCCCGGGGGC node #39 CCCCGCGGGC node #40 CCGCGCGGGC node #41 CCGCGCGGGC node #42 CCGGGCGGGC node #43 CCGGGCGGCC node #44 CGGGGCCGCC node #45 CGGGGCCCCC node #46 CGGGGCCCCC node #47 CGGGGCCCCC node #48 CCGGGCCCCC node #49 CCGGGCCCCC node #50 CCGCGCCCCC node #51 CCGCGCCCCC node #52 CCGCGCCCCC node #53 CCGCGCCCCG node #54 CCCCGCCCCC node #55 CCCCGCCCCC node #56 GCGGGCCCCC node #57 GCGGGCCCCG node #58 GCGGCCCCCG node #59 GCGGCGCCCG node #60 CCGGGCGGGC node #61 CCGGGCGGGC node #62 GCGGGCGGGC node #63 GCGGCCGGGC node #64 GCGGCGGGGC node #65 GCGGCGGGGC node #66 GCGGCGGGGC node #67 GCGGCGGGGC node #68 GCGCCGGGGC node #69 CCCCGCGGGC node #70 CCCCCGGGGC Overall accuracy of the 34 ancestral sequences: 0.95602 0.95602 0.95455 0.98584 0.98584 0.99846 0.95098 0.93915 0.97828 0.97828 0.97828 0.99902 0.99902 0.99985 0.99985 0.99985 0.99250 0.99861 0.99861 0.98433 0.98398 0.98669 0.99137 0.99846 0.99846 0.97139 0.97803 0.99999 0.99999 0.99999 0.99999 0.99410 0.97995 0.94975 for a site. 0.61783 0.61783 0.59678 0.86222 0.86222 0.98464 0.56794 0.49507 0.78363 0.78363 0.78363 0.99023 0.99023 0.99850 0.99850 0.99850 0.92619 0.98612 0.98612 0.84934 0.84626 0.87260 0.91468 0.98469 0.98469 0.73579 0.79053 0.99994 0.99994 0.99994 0.99994 0.94183 0.80398 0.57972 for the sequence. Counts of changes at sites 1 CG CG CG CG CG CG (6) 2 CG CG GC (3) 3 CG GC (2) 4 CG GC GC (3) 5 GC GC GC GC (4) 6 CG GC CG CG (4) 7 GC GC (2) 8 GC GC GC GC (4) 9 CG GC GC (3) 10 GC CG CG CG CG CG CG (7) ALTree-v1.3.2/test/paml/unrooted_absent/association/rst1000066400000000000000000000000011412112337500232400ustar00rootroot00000000000000 ALTree-v1.3.2/test/paml/unrooted_absent/association/rub000066400000000000000000000355251412112337500231620ustar00rootroot00000000000000 TREE # 1 1 114.2217 182.744808 x: 0.81953 0.86726 1.00000 0.98855 0.88247 0.84891 0.70415 0.75247 0.74771 0.88939 0.84284 0.64718 0.57978 0.85414 0.86111 0.86635 0.77397 0.50917 0.42804 0.81501 0.71042 0.53319 0.76728 0.73392 0.74699 0.78910 0.82591 0.87496 0.51062 0.47103 0.87787 0.76916 0.53210 0.68156 1.00000 0.21839 0.24112 0.21870 0.24735 2 33.3781 173.193043 x: 0.66645 0.76411 0.92536 0.95393 0.88891 0.86784 0.78325 0.81607 0.84675 1.00000 0.98183 0.79325 0.70171 0.87017 0.92921 0.91115 0.75191 0.55298 0.44804 0.79695 0.71136 0.54174 0.73542 0.70215 0.74897 0.76242 0.79645 0.85402 0.56155 0.55457 0.89908 0.73472 0.49428 0.66111 1.00000 0.21839 0.24112 0.21870 0.24735 3 31.4100 171.781061 x: 0.62417 0.74965 0.91675 0.95149 0.90625 0.88001 0.78246 0.80286 0.84118 1.00000 1.00000 0.80201 0.71661 0.86325 0.94088 0.92065 0.74370 0.56121 0.45343 0.78782 0.70888 0.54213 0.72767 0.71813 0.77166 0.76839 0.79675 0.84956 0.58196 0.57880 0.90681 0.72558 0.48462 0.65359 1.00000 0.21839 0.24112 0.21870 0.24735 4 17.6196 168.911436 x: 0.51067 0.81574 0.94821 0.90043 0.96369 0.82082 0.79862 0.80055 0.86659 1.00000 1.00000 0.79029 0.78033 0.84485 1.00000 0.97225 0.69896 0.58526 0.48375 0.78013 0.71246 0.55541 0.69888 0.75767 0.82635 0.74263 0.76582 0.82443 0.63155 0.64228 0.93986 0.69836 0.46232 0.61078 1.00000 0.21839 0.24112 0.21870 0.24735 5 23.3706 167.934844 x: 0.46216 0.86110 0.93986 0.86826 0.98931 0.82164 0.80459 0.79420 0.85851 1.00000 1.00000 0.80621 0.80257 0.83859 1.00000 1.00000 0.67621 0.58703 0.50051 0.78624 0.71715 0.56273 0.69048 0.76097 0.83554 0.73319 0.76798 0.83004 0.64283 0.65618 0.95449 0.69272 0.45892 0.58833 1.00000 0.21839 0.24112 0.21870 0.24735 6 14.7695 167.479522 x: 0.45580 0.88314 0.91969 0.86302 1.00000 0.82049 0.79826 0.79378 0.86299 1.00000 1.00000 0.81195 0.82104 0.83901 1.00000 1.00000 0.66109 0.59098 0.51385 0.78202 0.71682 0.56516 0.68461 0.76386 0.84417 0.73400 0.77019 0.83008 0.65352 0.67100 0.96526 0.68736 0.45689 0.57584 1.00000 0.21839 0.24112 0.21870 0.24735 7 14.1126 166.380253 x: 0.40133 0.94902 0.85973 0.90176 1.00000 0.83703 0.81750 0.80356 0.85734 1.00000 1.00000 0.79473 0.86120 0.81071 1.00000 1.00000 0.62946 0.59618 0.55199 0.77017 0.71392 0.56886 0.66911 0.75636 0.85741 0.71901 0.74939 0.80044 0.67320 0.70913 1.00000 0.67154 0.44986 0.54148 1.00000 0.21839 0.24112 0.21870 0.24735 8 7.1096 165.537735 x: 0.38824 1.00000 0.86939 0.92548 1.00000 0.85363 0.86585 0.77743 0.82165 1.00000 1.00000 0.81829 0.89663 0.78984 1.00000 1.00000 0.63241 0.60314 0.57203 0.77829 0.71670 0.57218 0.65330 0.76451 0.88938 0.70924 0.72837 0.77878 0.70522 0.75641 1.00000 0.65269 0.43569 0.52637 1.00000 0.21839 0.24112 0.21870 0.24735 10 12.4933 164.710179 x: 0.31937 0.98963 0.83943 0.89445 1.00000 0.86785 0.86792 0.76947 0.83855 1.00000 1.00000 0.84780 0.93097 0.79148 1.00000 1.00000 0.61737 0.61686 0.58255 0.76430 0.71371 0.57418 0.64013 0.78513 0.92240 0.71892 0.73462 0.77881 0.73837 0.79583 1.00000 0.63825 0.42101 0.51363 1.00000 0.21839 0.24112 0.21870 0.24735 11 28.6001 163.690231 x: 0.30849 1.00000 0.83132 0.88174 1.00000 0.90084 0.88079 0.76986 0.86593 1.00000 1.00000 0.88416 0.97608 0.79541 1.00000 1.00000 0.59945 0.63370 0.59583 0.74977 0.71119 0.57745 0.62429 0.81623 0.96647 0.73286 0.74365 0.77931 0.77958 0.84416 1.00000 0.62096 0.40596 0.50029 1.00000 0.21839 0.24112 0.21870 0.24735 12 12.9759 163.302483 x: 0.31418 1.00000 0.82947 0.87634 1.00000 0.88488 0.87829 0.76253 0.86595 1.00000 1.00000 0.87994 1.00000 0.79028 1.00000 1.00000 0.58781 0.64116 0.60387 0.74294 0.71012 0.57951 0.61465 0.83005 0.98911 0.73099 0.74097 0.77380 0.80210 0.87281 1.00000 0.61011 0.39879 0.49410 1.00000 0.21839 0.24112 0.21870 0.24735 13 9.4290 163.143128 x: 0.31029 1.00000 0.83219 0.88192 1.00000 0.88725 0.88253 0.76355 0.86452 1.00000 1.00000 0.87055 1.00000 0.78603 1.00000 1.00000 0.57974 0.64396 0.61006 0.74278 0.71084 0.58172 0.60836 0.83315 1.00000 0.72008 0.73234 0.76553 0.81491 0.89160 1.00000 0.60251 0.39389 0.49006 1.00000 0.21839 0.24112 0.21870 0.24735 14 5.0572 162.590098 x: 0.33894 1.00000 0.82330 0.86997 1.00000 0.88838 0.88500 0.76507 0.85807 1.00000 1.00000 0.91539 1.00000 0.79293 1.00000 1.00000 0.53685 0.64435 0.65398 0.76372 0.72056 0.59689 0.57700 0.81436 1.00000 0.64263 0.68553 0.72524 0.88194 1.00000 1.00000 0.56131 0.36840 0.47302 1.00000 0.21839 0.24112 0.21870 0.24735 15 2.9629 162.091317 x: 0.35890 1.00000 0.83330 0.87032 1.00000 0.91205 0.86078 0.75544 0.87189 1.00000 1.00000 0.89374 1.00000 0.79559 1.00000 1.00000 0.48309 0.64473 0.71567 0.75604 0.71892 0.60844 0.53786 0.84271 1.00000 0.65973 0.71959 0.73694 1.00000 1.00000 1.00000 0.51387 0.32888 0.44585 1.00000 0.21839 0.24112 0.21870 0.24735 16 3.3956 161.872408 x: 0.34492 1.00000 0.84438 0.86389 1.00000 0.88023 0.89673 0.76456 0.91656 1.00000 1.00000 0.90863 1.00000 0.78793 1.00000 1.00000 0.42667 0.66187 0.78707 0.72343 0.71061 0.61791 0.49406 0.88799 1.00000 0.67913 0.73792 0.72304 1.00000 1.00000 1.00000 0.46053 0.28243 0.41056 1.00000 0.21839 0.24112 0.21870 0.24735 17 3.9966 161.770070 x: 0.33851 1.00000 0.84337 0.85142 1.00000 0.89056 0.90211 0.74173 0.89353 1.00000 1.00000 0.92408 1.00000 0.78074 1.00000 1.00000 0.39483 0.67357 0.83450 0.70239 0.70601 0.62276 0.46838 0.92831 1.00000 0.68671 0.73893 0.70807 1.00000 1.00000 1.00000 0.42953 0.25884 0.39136 1.00000 0.21839 0.24112 0.21870 0.24735 18 1.4952 161.734635 x: 0.34298 1.00000 0.82774 0.82765 1.00000 0.89872 0.90300 0.74562 0.89743 1.00000 1.00000 0.90847 1.00000 0.79032 1.00000 1.00000 0.39186 0.67804 0.86551 0.69967 0.70777 0.62375 0.46295 0.95674 1.00000 0.68308 0.72774 0.69970 1.00000 1.00000 1.00000 0.42233 0.26025 0.38958 1.00000 0.21839 0.24112 0.21870 0.24735 19 1.4157 161.681430 x: 0.33721 1.00000 0.82956 0.83303 1.00000 0.89316 0.89742 0.74898 0.89724 1.00000 1.00000 0.90821 1.00000 0.79611 1.00000 1.00000 0.40046 0.67870 0.90635 0.70533 0.71307 0.62354 0.46450 1.00000 1.00000 0.67837 0.71305 0.69722 1.00000 1.00000 1.00000 0.42370 0.27168 0.39300 1.00000 0.21839 0.24112 0.21870 0.24735 20 0.9514 161.624429 x: 0.33617 1.00000 0.83343 0.84359 1.00000 0.88771 0.90171 0.74736 0.88990 1.00000 1.00000 0.90042 1.00000 0.78287 1.00000 1.00000 0.40786 0.68270 1.00000 0.70168 0.71701 0.62281 0.46094 0.99348 1.00000 0.68210 0.70009 0.70005 1.00000 1.00000 1.00000 0.42018 0.28610 0.39681 1.00000 0.21839 0.24112 0.21870 0.24735 21 0.4760 161.610936 x: 0.33629 1.00000 0.83037 0.85154 1.00000 0.88612 0.90251 0.74028 0.89306 1.00000 1.00000 0.89494 1.00000 0.76679 1.00000 1.00000 0.40415 0.65880 1.00000 0.70513 0.71324 0.62360 0.46084 0.99624 1.00000 0.66902 0.70329 0.70164 1.00000 1.00000 1.00000 0.42099 0.27893 0.40072 1.00000 0.21839 0.24112 0.21870 0.24735 22 0.3483 161.605079 x: 0.33473 1.00000 0.83306 0.85747 1.00000 0.88272 0.90598 0.74121 0.88622 1.00000 1.00000 0.89070 1.00000 0.77790 1.00000 1.00000 0.40066 0.65497 1.00000 0.70599 0.70914 0.62374 0.46231 0.99700 1.00000 0.66154 0.70980 0.70015 1.00000 1.00000 1.00000 0.42349 0.27113 0.40129 1.00000 0.21839 0.24112 0.21870 0.24735 23 0.2164 161.601734 x: 0.33263 1.00000 0.83778 0.86020 1.00000 0.88295 0.89778 0.74256 0.88806 1.00000 1.00000 0.88911 1.00000 0.77716 1.00000 1.00000 0.39894 0.66367 1.00000 0.70784 0.70826 0.62390 0.46498 0.99713 1.00000 0.65668 0.71212 0.69476 1.00000 1.00000 1.00000 0.42687 0.26937 0.40093 1.00000 0.21839 0.24112 0.21870 0.24735 24 0.2547 161.599048 x: 0.33218 1.00000 0.83901 0.86028 1.00000 0.88274 0.90033 0.74474 0.88560 1.00000 1.00000 0.88820 1.00000 0.77240 1.00000 1.00000 0.39995 0.66884 1.00000 0.70958 0.70909 0.62370 0.46754 1.00000 1.00000 0.65626 0.71307 0.69319 1.00000 1.00000 1.00000 0.43006 0.27167 0.40137 1.00000 0.21839 0.24112 0.21870 0.24735 26 0.7126 161.598561 x: 0.33268 1.00000 0.83978 0.86142 1.00000 0.88397 0.90086 0.74530 0.88624 1.00000 1.00000 0.88776 1.00000 0.77267 1.00000 1.00000 0.40013 0.66880 1.00000 0.70966 0.70929 0.62371 0.46749 0.99891 1.00000 0.65655 0.71289 0.69339 1.00000 1.00000 1.00000 0.43000 0.27200 0.40136 1.00000 0.21839 0.24112 0.21870 0.24735 27 0.7472 161.597464 x: 0.33194 1.00000 0.84064 0.86304 1.00000 0.88568 0.90152 0.74600 0.88719 1.00000 1.00000 0.88680 1.00000 0.77307 1.00000 1.00000 0.40049 0.66868 1.00000 0.70978 0.70970 0.62373 0.46737 1.00000 1.00000 0.65704 0.71240 0.69375 1.00000 1.00000 1.00000 0.42986 0.27264 0.40130 1.00000 0.21839 0.24112 0.21870 0.24735 28 0.8253 161.597007 x: 0.32978 1.00000 0.84094 0.86414 1.00000 0.88668 0.90184 0.74631 0.88785 1.00000 1.00000 0.88577 1.00000 0.77340 1.00000 1.00000 0.40089 0.66850 1.00000 0.70985 0.71015 0.62374 0.46722 0.99971 1.00000 0.65746 0.71172 0.69408 1.00000 1.00000 1.00000 0.42967 0.27340 0.40124 1.00000 0.21839 0.24112 0.21870 0.24735 29 0.1950 161.596348 x: 0.32940 1.00000 0.84181 0.86664 1.00000 0.88469 0.90090 0.74495 0.88787 1.00000 1.00000 0.88460 1.00000 0.77453 1.00000 1.00000 0.40294 0.66763 1.00000 0.71009 0.71235 0.62373 0.46640 0.99971 1.00000 0.66005 0.70840 0.69599 1.00000 1.00000 1.00000 0.42875 0.27819 0.40192 1.00000 0.21839 0.24112 0.21870 0.24735 30 0.2058 161.595960 x: 0.32936 1.00000 0.84031 0.86585 1.00000 0.88533 0.90205 0.74500 0.88838 1.00000 1.00000 0.88614 1.00000 0.77509 1.00000 1.00000 0.40486 0.66716 1.00000 0.71024 0.71414 0.62369 0.46563 0.99973 1.00000 0.66197 0.70495 0.69743 1.00000 1.00000 1.00000 0.42784 0.28225 0.40271 1.00000 0.21839 0.24112 0.21870 0.24735 31 0.0738 161.595920 x: 0.32954 1.00000 0.83999 0.86551 1.00000 0.88584 0.90189 0.74501 0.88793 1.00000 1.00000 0.88563 1.00000 0.77457 1.00000 1.00000 0.40515 0.66720 1.00000 0.71003 0.71418 0.62362 0.46547 0.99973 1.00000 0.66245 0.70446 0.69773 1.00000 1.00000 1.00000 0.42769 0.28269 0.40292 1.00000 0.21839 0.24112 0.21870 0.24735 32 0.0276 161.595905 x: 0.32949 1.00000 0.84007 0.86549 1.00000 0.88559 0.90190 0.74555 0.88800 1.00000 1.00000 0.88560 1.00000 0.77403 1.00000 1.00000 0.40538 0.66749 1.00000 0.70973 0.71391 0.62351 0.46530 0.99973 1.00000 0.66280 0.70403 0.69790 1.00000 1.00000 1.00000 0.42755 0.28262 0.40313 1.00000 0.21839 0.24112 0.21870 0.24735 33 0.0218 161.595900 x: 0.32941 1.00000 0.84018 0.86558 1.00000 0.88567 0.90170 0.74561 0.88790 1.00000 1.00000 0.88583 1.00000 0.77397 1.00000 1.00000 0.40549 0.66765 1.00000 0.70961 0.71374 0.62347 0.46522 0.99974 1.00000 0.66298 0.70383 0.69798 1.00000 1.00000 1.00000 0.42748 0.28248 0.40324 1.00000 0.21839 0.24112 0.21870 0.24735 34 0.0087 161.595894 x: 0.32940 1.00000 0.84019 0.86546 1.00000 0.88566 0.90166 0.74566 0.88785 1.00000 1.00000 0.88568 1.00000 0.77440 1.00000 1.00000 0.40564 0.66780 1.00000 0.70966 0.71353 0.62347 0.46510 0.99975 1.00000 0.66314 0.70348 0.69804 1.00000 1.00000 1.00000 0.42736 0.28211 0.40342 1.00000 0.21839 0.24112 0.21870 0.24735 35 0.0045 161.595885 x: 0.32931 1.00000 0.84024 0.86546 1.00000 0.88564 0.90189 0.74525 0.88796 1.00000 1.00000 0.88564 1.00000 0.77416 1.00000 1.00000 0.40572 0.66758 1.00000 0.71013 0.71354 0.62364 0.46501 0.99976 1.00000 0.66336 0.70329 0.69822 1.00000 1.00000 1.00000 0.42725 0.28163 0.40352 1.00000 0.21839 0.24112 0.21870 0.24735 36 0.0030 161.595868 x: 0.32920 1.00000 0.84011 0.86552 1.00000 0.88571 0.90146 0.74538 0.88817 1.00000 1.00000 0.88559 1.00000 0.77408 1.00000 1.00000 0.40554 0.66731 1.00000 0.70975 0.71374 0.62373 0.46508 0.99980 1.00000 0.66283 0.70342 0.69798 1.00000 1.00000 1.00000 0.42732 0.28210 0.40314 1.00000 0.21839 0.24112 0.21870 0.24735 37 0.0092 161.595863 x: 0.32909 1.00000 0.84011 0.86559 1.00000 0.88566 0.90165 0.74549 0.88786 1.00000 1.00000 0.88561 1.00000 0.77415 1.00000 1.00000 0.40546 0.66735 1.00000 0.70958 0.71380 0.62369 0.46513 0.99981 1.00000 0.66280 0.70369 0.69799 1.00000 1.00000 1.00000 0.42739 0.28235 0.40301 1.00000 0.21839 0.24112 0.21870 0.24735 38 0.0039 161.595863 x: 0.32909 1.00000 0.84011 0.86559 1.00000 0.88566 0.90165 0.74549 0.88786 1.00000 1.00000 0.88561 1.00000 0.77415 1.00000 1.00000 0.40546 0.66735 1.00000 0.70958 0.71380 0.62369 0.46513 0.99981 1.00000 0.66280 0.70369 0.69799 1.00000 1.00000 1.00000 0.42739 0.28235 0.40301 1.00000 0.21839 0.24112 0.21870 0.24735 check convergence! ALTree-v1.3.2/test/paml/unrooted_absent/association/run_altree000077500000000000000000000010511412112337500245200ustar00rootroot00000000000000#!/bin/sh -x # To obtain the apomorphy list corresponding to the tree whose topology # has been reconstructed by phyML # paml uses the baseml.ctl file as the parameter file baseml #To perform the association test # The tree is not rooted so we have to specify the name of the # outgroup sequence to perform the association analysis which needs a # rooted tree. # The outgroup sequence is removed before the analysis ../../../../altree -i rst -j nb_cas_control.txt -a -t SNP \ --remove-outgroup --outgroup OUTG -p paml -r 1 -o 1_trio_ML.asso ALTree-v1.3.2/test/paml/unrooted_absent/association/trio2.phy000066400000000000000000000014361412112337500242220ustar00rootroot00000000000000 36 10 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC ALTree-v1.3.2/test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt000066400000000000000000000015461412112337500272720ustar00rootroot00000000000000(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896); ALTree-v1.3.2/test/paml/unrooted_present/000077500000000000000000000000001412112337500203255ustar00rootroot00000000000000ALTree-v1.3.2/test/paml/unrooted_present/association/000077500000000000000000000000001412112337500226415ustar00rootroot00000000000000ALTree-v1.3.2/test/paml/unrooted_present/association/1_trio_ML.asso000066400000000000000000000130621412112337500253170ustar00rootroot00000000000000 /----* H006 case/control:23/19 | Site: 2 Sens: C-->G | /----* H031 case/control:1/0 | | Site: 8 Sens: G-->C | |----* H005 case/control:2/2 | | Site: 10 Sens: C-->G | | /----* H032 case/control:0/1 | | | Site: 7 Sens: G-->C | |----* 68 case/control:2/3 | | | Site: 4 Sens: G-->C | | \----* H016 case/control:2/2 | /----* 64+(65+(66+(67))) case/control:34/24 | | | Site: 6 Sens: C-->G | | |----* H008 case/control:28/19 | | \----* H024 case/control:1/0 | | Site: 9 Sens: G-->C | /----* 63 case/control:45/26 | | | Site: 5 Sens: G-->C | | \----* H004 case/control:11/2 |----* 62 case/control:47/29 | | Site: 1 Sens: C-->G | \----* H025 case/control:2/3 |----* OUTG case/control:4/4 | Site: 11 Sens: G-->C -----* 60+(61)+(42) case/control:204/204 | | [0] ddl=4 chi2=6.69 p_value_chi2=0.158 | [1] ddl=8 chi2=11.30 p_value_chi2=0.173 | [2] ddl=12 chi2=24.02 p_value_chi2=0.012 | [3] ddl=21 chi2=39.11 p_value_chi2=0.002 | [4] ddl=25 chi2=54.71 p_value_chi2=0 | [5] ddl=29 chi2=63.21 p_value_chi2=0 | [6] ddl=33 chi2=65.94 p_value_chi2=0 | [7] ddl=34 chi2=67.18 p_value_chi2=0 | [8] ddl=35 chi2=68.34 p_value_chi2=0 | /----* H010 case/control:1/3 | /----* 53 case/control:1/4 | | | Site: 10 Sens: C-->G | | \----* H033 case/control:0/1 | | Site: 1 Sens: C-->G | | /----* H027 case/control:1/2 | | | Site: 6 Sens: C-->G | | | Site: 10 Sens: C-->G | | |----* H017 case/control:0/8 | |----* 54+(55) case/control:3/13 | | | Site: 3 Sens: G-->C | | \----* H014 case/control:2/3 | | Site: 1 Sens: C-->G | /----* 50+(51+(52)) case/control:9/25 | | | Site: 4 Sens: G-->C | | |----* H011 case/control:3/8 | | \----* H003 case/control:2/0 | | Site: 5 Sens: G-->C | |----* H018 case/control:2/2 | /----* 48+(49) case/control:40/39 | | | Site: 2 Sens: G-->C | | | /----* H022 case/control:9/1 | | | /----* 58 case/control:27/9 | | | | | Site: 5 Sens: G-->C | | | | | /----* H013 case/control:15/5 | | | | \----* 59 case/control:18/8 | | | | | Site: 6 Sens: C-->G | | | | \----* H019 case/control:3/3 | | | | Site: 10 Sens: G-->C | | | /----* 57 case/control:28/9 | | | | | Site: 10 Sens: C-->G | | | | \----* H034 case/control:1/0 | | \----* 56 case/control:29/12 | | | Site: 1 Sens: C-->G | | \----* H029 case/control:1/3 | |----* H020 case/control:5/9 | | Site: 10 Sens: C-->G | /----* 45+(46+(47)) case/control:71/93 | | | Site: 8 Sens: G-->C | | |----* H001 case/control:24/39 | | \----* H015 case/control:2/6 | | Site: 9 Sens: C-->G | /----* 44 case/control:75/93 | | | Site: 7 Sens: G-->C | | | Site: 2 Sens: C-->G | | \----* H028 case/control:4/0 |----* 43 case/control:76/94 | | Site: 9 Sens: G-->C | \----* H030 case/control:1/1 | /----* H035 case/control:1/0 | | Site: 10 Sens: C-->G | |----* H007 case/control:25/36 \----* 41+(40) case/control:54/58 | Site: 4 Sens: G-->C | /----* H026 case/control:1/0 | | Site: 1 Sens: C-->G | |----* H023 case/control:1/5 \----* 39+(69) case/control:28/22 | Site: 3 Sens: G-->C | /----* H012 case/control:1/2 | | /----* H021 case/control:11/2 | | | Site: 8 Sens: G-->C | | | Site: 1 Sens: C-->G | |----* 70 case/control:20/5 | | | Site: 5 Sens: G-->C | | \----* H002 case/control:9/3 \----* 38+(37) case/control:26/17 | Site: 6 Sens: C-->G \----* H009 case/control:5/10 Site: 8 Sens: G-->C Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 ALTree-v1.3.2/test/paml/unrooted_present/association/2base.t000066400000000000000000000131431412112337500240240ustar00rootroot00000000000000 36 H019 H026 9.0000 H004 nan nan H020 nan 9.0000 9.0000 H034 nan 9.0000 nan nan H027 nan 9.0000 9.0000 nan nan H023 9.0000 nan nan 9.0000 9.0000 nan H016 nan nan nan 9.0000 9.0000 9.0000 nan H002 9.0000 nan nan 9.0000 9.0000 nan nan nan H015 nan 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 H006 9.0000 nan nan nan 9.0000 9.0000 nan 9.0000 nan nan H001 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan H010 nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan H028 nan 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan nan H024 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan H017 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 H009 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan 9.0000 9.0000 nan H007 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan nan nan nan nan nan H033 nan nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan 9.0000 nan H008 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 H029 nan nan nan nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan nan 9.0000 nan nan nan H003 nan 9.0000 nan nan nan nan 9.0000 nan 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 nan nan 9.0000 nan H035 9.0000 nan nan nan nan nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan nan nan 9.0000 9.0000 nan H013 nan 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 H032 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan nan nan nan H025 nan nan nan 9.0000 nan 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan H021 nan nan nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan H030 nan nan nan nan nan 9.0000 nan nan nan nan nan nan nan nan nan nan nan nan nan nan nan nan nan 9.0000 9.0000 nan 9.0000 H031 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan nan nan 9.0000 nan nan nan nan nan H012 9.0000 nan nan 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan nan H005 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 H011 nan nan 9.0000 nan nan nan nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan nan nan nan nan 9.0000 nan 9.0000 nan 9.0000 H022 nan 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan nan nan 9.0000 nan nan 9.0000 nan nan H014 nan nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan nan H018 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan nan nan nan nan nan nan nan nan nan 9.0000 nan nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan nan nan OUTG 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan ALTree-v1.3.2/test/paml/unrooted_present/association/baseml.ctl000066400000000000000000000032231412112337500246100ustar00rootroot00000000000000 seqfile = trio2.phy treefile = trio2.phy_phyml_tree.txt outfile = mlb * main result file noisy = 9 * 0,1,2,3: how much rubbish on the screen verbose = 1 * 1: detailed output, 0: concise output runmode = 0 * 0: user tree; 1: semi-automatic; 2: automatic * 3: StepwiseAddition; (4,5):PerturbationNNI model = 7 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85 * 5:T92, 6:TN93, 7:REV, 8:UNREST, 9:REVu; 10:UNRESTu Mgene = 0 * 0:rates, 1:separate; 2:diff pi, 3:diff kapa, 4:all diff * ndata = 1 clock = 1 * 0:no clock, 1:clock; 2:local clock; 3:CombinedAnalysis fix_kappa = 0 * 0: estimate kappa; 1: fix kappa at value below kappa = 5 * initial or fixed kappa fix_alpha = 1 * 0: estimate alpha; 1: fix alpha at value below alpha = 0 * initial or fixed alpha, 0:infinity (constant rate) Malpha = 0 * 1: different alpha's for genes, 0: one alpha ncatG = 5 * # of categories in the dG, AdG, or nparK models of rates nparK = 0 * rate-class models. 1:rK, 2:rK&fK, 3:rK&MK(1/K), 4:rK&MK nhomo = 0 * 0 & 1: homogeneous, 2: kappa for branches, 3: N1, 4: N2 getSE = 0 * 0: don't want them, 1: want S.E.s of estimates RateAncestor = 1 * (0,1,2): rates (alpha>0) or ancestral states Small_Diff = 7e-6 cleandata = 0 * remove sites with ambiguity data (1:yes, 0:no)? * icode = 0 * (with RateAncestor=1. try "GC" in data,model=4,Mgene=4) * fix_blength = -1 * 0: ignore, -1: random, 1: initial, 2: fixed method = 0 * 0: simultaneous; 1: one branch at a time ALTree-v1.3.2/test/paml/unrooted_present/association/lnf000066400000000000000000000016401412112337500233440ustar00rootroot00000000000000 -1 11 11 1 1 1 -21.8448847646 0.0000 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC 2 1 -13.6418393080 0.0000 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC 3 1 -11.6756376430 0.0001 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG 4 1 -15.6068374149 0.0000 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG 5 1 -15.9985356580 0.0000 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG 6 1 -18.0565869859 0.0000 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC 7 1 -11.4529895174 0.0001 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG 8 1 -14.7076669554 0.0000 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG 9 1 -13.3076620282 0.0000 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG 10 1 -25.2617214477 0.0000 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC 11 1 -6.4871501505 0.0168 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCALTree-v1.3.2/test/paml/unrooted_present/association/mlb000066400000000000000000000513361412112337500233460ustar00rootroot00000000000000 seed used = 30455833 H019 GCGGCGCCCC G H026 GCCCGCGGGC G H004 GCGGCCGGGC G H020 CGGGGCCCCG G H034 GCGGGCCCCG G H027 CCCCGGCCCG G H023 CCCCGCGGGC G H016 GCGCCGGGGC G H002 CCCCCGGGGC G H015 CGGGGCCCGC G H006 CGGGGCGGGC G H001 CGGGGCCCCC G H010 CCGCGCCCCG G H028 CGGGGCCGCC G H024 GCGGCGGGCC G H017 CCCCGCCCCC G H009 CCCCGGGCGC G H007 CCGCGCGGGC G H033 GCGCGCCCCG G H008 GCGGCGGGGC G H029 GCGGGCCCCC G H003 CCGCCCCCCC G H035 CCGCGCGGGG G H013 GCGGCGCCCG G H032 GCGCCGCGGC G H025 GCGGGCGGGC G H021 GCCCCGGCGC G H030 CCGGGCGGCC G H031 GCGGCGGCGC G H012 CCCCGGGGGC G H005 GCGGCGGGGG G H011 CCGCGCCCCC G H022 GCGGCCCCCG G H014 GCCCGCCCCC G H018 CCGGGCCCCC G OUTG CCGGGCGGGC C BASEML (in paml 3.14, January 2004) trio2.phy REV Global clock ns = 36 ls = 11 # site patterns = 11 1 1 1 1 1 1 1 1 1 1 1 H019 GCGGCGCCCC G H026 ..CCGCGGG. . H004 .....CGGG. . H020 CG..GC...G . H034 ....GC...G . H027 C.CCG....G . H023 C.CCGCGGG. . H016 ...C..GGG. . H002 C.CC..GGG. . H015 CG..GC..G. . H006 CG..GCGGG. . H001 CG..GC.... . H010 C..CGC...G . H028 CG..GC.G.. . H024 ......GG.. . H017 C.CCGC.... . H009 C.CCG.G.G. . H007 C..CGCGGG. . H033 ...CGC...G . H008 ......GGG. . H029 ....GC.... . H003 C..C.C.... . H035 C..CGCGGGG . H013 .........G . H032 ...C...GG. . H025 ....GCGGG. . H021 ..CC..G.G. . H030 C...GCGG.. . H031 ......G.G. . H012 C.CCG.GGG. . H005 ......GGGG . H011 C..CGC.... . H022 .....C...G . H014 ..CCGC.... . H018 C...GC.... . OUTG C...GCGGG. C Frequencies.. T C A G H019 0.0000 0.5455 0.0000 0.4545 H026 0.0000 0.4545 0.0000 0.5455 H004 0.0000 0.3636 0.0000 0.6364 H020 0.0000 0.4545 0.0000 0.5455 H034 0.0000 0.4545 0.0000 0.5455 H027 0.0000 0.6364 0.0000 0.3636 H023 0.0000 0.5455 0.0000 0.4545 H016 0.0000 0.3636 0.0000 0.6364 H002 0.0000 0.5455 0.0000 0.4545 H015 0.0000 0.4545 0.0000 0.5455 H006 0.0000 0.2727 0.0000 0.7273 H001 0.0000 0.5455 0.0000 0.4545 H010 0.0000 0.6364 0.0000 0.3636 H028 0.0000 0.4545 0.0000 0.5455 H024 0.0000 0.3636 0.0000 0.6364 H017 0.0000 0.8182 0.0000 0.1818 H009 0.0000 0.5455 0.0000 0.4545 H007 0.0000 0.4545 0.0000 0.5455 H033 0.0000 0.5455 0.0000 0.4545 H008 0.0000 0.2727 0.0000 0.7273 H029 0.0000 0.5455 0.0000 0.4545 H003 0.0000 0.8182 0.0000 0.1818 H035 0.0000 0.3636 0.0000 0.6364 H013 0.0000 0.4545 0.0000 0.5455 H032 0.0000 0.4545 0.0000 0.5455 H025 0.0000 0.2727 0.0000 0.7273 H021 0.0000 0.5455 0.0000 0.4545 H030 0.0000 0.4545 0.0000 0.5455 H031 0.0000 0.3636 0.0000 0.6364 H012 0.0000 0.4545 0.0000 0.5455 H005 0.0000 0.1818 0.0000 0.8182 H011 0.0000 0.7273 0.0000 0.2727 H022 0.0000 0.5455 0.0000 0.4545 H014 0.0000 0.7273 0.0000 0.2727 H018 0.0000 0.6364 0.0000 0.3636 OUTG 0.0000 0.4545 0.0000 0.5455 Average 0.0000 0.4924 0.0000 0.5076 # constant sites: 0 (0.00%) ln Lmax (unconstrained) = -26.376848 Distances: TN93 (kappa) (alpha set at 0.00) This matrix is not used in later m.l. analysis. H019 H026 9.0000( 0.0000) H004 nan(999.0000) nan(999.0000) H020 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H034 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H027 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H023 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H016 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H002 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H015 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H006 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H001 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H010 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H028 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H024 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H017 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H009 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H007 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H033 nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H008 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H029 nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H003 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H035 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H013 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H032 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H025 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H021 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H030 nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H031 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H012 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H005 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H011 nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H022 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H014 nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H018 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) OUTG 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) TREE # 1: (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); MP score: 39.00 lnL(ntime: 34 np: 39): -168.041512 +0.000000 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 0.29506 0.29506 0.25204 0.21996 0.21996 0.19584 0.17361 0.12898 0.11393 0.11393 0.11393 0.10061 0.10061 0.07705 0.07705 0.07705 0.03142 0.05099 0.05099 0.07180 0.05119 0.03192 0.01484 0.19584 0.19584 0.13063 0.09238 0.06437 0.06437 0.06437 0.06437 0.02722 0.07328 0.11731 1.00000 0.21839 0.24112 0.21870 0.24735 tree length = 4.53786 (((((((((((((((((H010, H033), (H027, (H017, H014))), H011), H003), H018), (((H022, (H013, H019)), H034), H029)), H020), H001), H015), H028), H030), ((H006, ((((((H031, H005), (H032, H016)), H008), H024), H004), H025)), OUTG)), H035), H007), (H026, H023)), H012), (H021, H002), H009); (((((((((((((((((H010: 0.031418, H033: 0.031418): 0.045635, (H027: 0.050987, (H017: 0.050987, H014: 0.050987): 0.000000): 0.026065): 0.000000, H011: 0.077052): 0.000000, H003: 0.077053): 0.023554, H018: 0.100607): 0.000000, (((H022: 0.031920, (H013: 0.014845, H019: 0.014845): 0.017075): 0.019267, H034: 0.051187): 0.020614, H029: 0.071801): 0.028806): 0.013321, H020: 0.113928): 0.000000, H001: 0.113928): 0.000000, H015: 0.113928): 0.015048, H028: 0.128977): 0.044636, H030: 0.173613): 0.022224, ((H006: 0.195836, ((((((H031: 0.064366, H005: 0.064366): 0.000000, (H032: 0.027219, H016: 0.027219): 0.037147): 0.000000, H008: 0.064366): 0.000000, H024: 0.064366): 0.028012, H004: 0.092378): 0.038256, H025: 0.130634): 0.065201): 0.000000, OUTG: 0.195836): 0.000000): 0.024127, H035: 0.219963): 0.000000, H007: 0.219963): 0.032073, (H026: 0.073275, H023: 0.073275): 0.178761): 0.043019, H012: 0.295055): 0.000000, (H021: 0.117306, H002: 0.117306): 0.177750, H009: 0.295056); Detailed output identifying parameters Parameters in the rate matrix (REV) (Yang 1994 J Mol Evol 39:105-111): Rate parameters: 1.00000 0.21839 0.24112 0.21870 0.24735 Base frequencies: 0.00000 0.49242 0.00000 0.50758 Rate matrix Q, Average Ts/Tv = 0.0000 -4.972327 3.982525 0.000000 0.989801 0.000000 -1.015385 0.000000 1.015385 0.000000 0.870993 -4.976058 4.105065 0.000000 0.985075 0.000000 -0.985075 ALTree-v1.3.2/test/paml/unrooted_present/association/nb_cas_control.txt000066400000000000000000000010421412112337500263640ustar00rootroot00000000000000H019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 OUTG m004 c004 ALTree-v1.3.2/test/paml/unrooted_present/association/rst000066400000000000000000000320121412112337500233720ustar00rootroot00000000000000Supplemental results for BASEML seqf: trio2.phy treef: trio2.phy_phyml_tree.txt TREE # 1 Ancestral reconstruction by BASEML. (((((((((((((((((H010: 0.031418, H033: 0.031418): 0.045635, (H027: 0.050987, (H017: 0.050987, H014: 0.050987): 0.000000): 0.026065): 0.000000, H011: 0.077052): 0.000000, H003: 0.077053): 0.023554, H018: 0.100607): 0.000000, (((H022: 0.031920, (H013: 0.014845, H019: 0.014845): 0.017075): 0.019267, H034: 0.051187): 0.020614, H029: 0.071801): 0.028806): 0.013321, H020: 0.113928): 0.000000, H001: 0.113928): 0.000000, H015: 0.113928): 0.015048, H028: 0.128977): 0.044636, H030: 0.173613): 0.022224, ((H006: 0.195836, ((((((H031: 0.064366, H005: 0.064366): 0.000000, (H032: 0.027219, H016: 0.027219): 0.037147): 0.000000, H008: 0.064366): 0.000000, H024: 0.064366): 0.028012, H004: 0.092378): 0.038256, H025: 0.130634): 0.065201): 0.000000, OUTG: 0.195836): 0.000000): 0.024127, H035: 0.219963): 0.000000, H007: 0.219963): 0.032073, (H026: 0.073275, H023: 0.073275): 0.178761): 0.043019, H012: 0.295055): 0.000000, (H021: 0.117306, H002: 0.117306): 0.177750, H009: 0.295056); (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 tree with node labels for Rod Page's TreeView (((((((((((((((((13_H010: 0.031418, 19_H033: 0.031418) 53 : 0.045635, (6_H027: 0.050987, (16_H017: 0.050987, 34_H014: 0.050987) 55 : 0.000000) 54 : 0.026065) 52 : 0.000000, 32_H011: 0.077052) 51 : 0.000000, 22_H003: 0.077053) 50 : 0.023554, 35_H018: 0.100607) 49 : 0.000000, (((33_H022: 0.031920, (24_H013: 0.014845, 1_H019: 0.014845) 59 : 0.017075) 58 : 0.019267, 5_H034: 0.051187) 57 : 0.020614, 21_H029: 0.071801) 56 : 0.028806) 48 : 0.013321, 4_H020: 0.113928) 47 : 0.000000, 12_H001: 0.113928) 46 : 0.000000, 10_H015: 0.113928) 45 : 0.015048, 14_H028: 0.128977) 44 : 0.044636, 28_H030: 0.173613) 43 : 0.022224, ((11_H006: 0.195836, ((((((29_H031: 0.064366, 31_H005: 0.064366) 67 : 0.000000, (25_H032: 0.027219, 8_H016: 0.027219) 68 : 0.037147) 66 : 0.000000, 20_H008: 0.064366) 65 : 0.000000, 15_H024: 0.064366) 64 : 0.028012, 3_H004: 0.092378) 63 : 0.038256, 26_H025: 0.130634) 62 : 0.065201) 61 : 0.000000, 36_OUTG: 0.195836) 60 : 0.000000) 42 : 0.024127, 23_H035: 0.219963) 41 : 0.000000, 18_H007: 0.219963) 40 : 0.032073, (2_H026: 0.073275, 7_H023: 0.073275) 69 : 0.178761) 39 : 0.043019, 30_H012: 0.295055) 38 : 0.000000, (27_H021: 0.117306, 9_H002: 0.117306) 70 : 0.177750, 17_H009: 0.295056) 37 ; Nodes 37 to 70 are ancestral (1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650). Prob of best character at each node, listed by site Site Freq Data: 1 1 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC: C(0.994) C(0.994) C(0.996) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(0.957) C(0.999) C(0.999) G(0.948) G(0.998) G(1.000) G(1.000) C(1.000) C(1.000) G(0.924) G(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.848) C(0.847) 2 1 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC: C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(0.995) C(0.938) G(0.745) G(0.774) G(0.774) G(0.774) C(0.996) C(0.996) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.995) C(0.995) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.998) 3 1 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG: C(0.937) C(0.937) C(0.760) G(0.973) G(0.973) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.995) C(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.992) C(0.993) 4 1 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG: C(0.994) C(0.994) C(0.981) C(0.926) C(0.926) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(0.998) G(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.997) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.981) C(0.999) C(0.997) 5 1 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG: G(0.979) G(0.979) G(0.997) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.995) G(0.944) C(0.974) C(1.000) G(1.000) G(1.000) G(0.826) C(0.948) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.999) C(0.930) 6 1 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC: G(0.755) G(0.755) C(0.908) C(0.997) C(0.997) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(1.000) C(0.998) C(0.964) G(0.988) C(1.000) C(1.000) C(0.976) C(0.869) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.996) G(0.980) 7 1 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG: G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(0.923) C(0.962) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.964) G(0.999) G(0.998) 8 1 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG: G(0.952) G(0.952) G(0.994) G(1.000) G(1.000) G(1.000) G(0.976) G(0.705) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.816) 9 1 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG: G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(0.998) C(0.737) C(0.988) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.998) G(0.998) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.998) 10 1 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC: C(0.999) C(0.999) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.979) C(0.999) C(0.999) C(0.920) G(0.894) G(0.932) G(0.918) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.998) 11 1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC: G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.998) Summary of changes along branches. Check root for directions of change. Branch 1: 37..38 Branch 2: 38..39 6 G 0.755 -> C 0.908 Branch 3: 39..40 3 C 0.760 -> G 0.973 Branch 4: 40..41 Branch 5: 41..42 4 C 0.926 -> G 0.997 Branch 6: 42..43 9 G 0.998 -> C 0.737 Branch 7: 43..44 2 C 0.938 -> G 0.745 7 G 0.923 -> C 0.962 Branch 8: 44..45 8 G 0.705 -> C 0.999 Branch 9: 45..46 Branch 10: 46..47 Branch 11: 47..48 2 G 0.774 -> C 0.996 Branch 12: 48..49 Branch 13: 49..50 4 G 0.998 -> C 1.000 Branch 14: 50..51 Branch 15: 51..52 Branch 16: 52..53 10 C 1.000 -> G 0.979 Branch 17: 53..13 (H010) Branch 18: 53..19 (H033) 1 C 0.957 -> G Branch 19: 52..54 3 G 1.000 -> C 0.995 Branch 20: 54..6 (H027) 6 C 0.999 -> G 10 C 0.999 -> G Branch 21: 54..55 Branch 22: 55..16 (H017) Branch 23: 55..34 (H014) 1 C 0.999 -> G Branch 24: 51..32 (H011) Branch 25: 50..22 (H003) 5 G 1.000 -> C Branch 26: 49..35 (H018) Branch 27: 48..56 1 C 0.999 -> G 0.948 Branch 28: 56..57 10 C 0.920 -> G 0.894 Branch 29: 57..58 5 G 0.944 -> C 0.974 Branch 30: 58..33 (H022) Branch 31: 58..59 6 C 0.964 -> G 0.988 Branch 32: 59..24 (H013) Branch 33: 59..1 (H019) 10 G 0.918 -> C Branch 34: 57..5 (H034) Branch 35: 56..21 (H029) Branch 36: 47..4 (H020) 10 C 1.000 -> G Branch 37: 46..12 (H001) Branch 38: 45..10 (H015) 9 C 0.999 -> G Branch 39: 44..14 (H028) Branch 40: 43..28 (H030) Branch 41: 42..60 Branch 42: 60..61 Branch 43: 61..11 (H006) 2 C 0.995 -> G Branch 44: 61..62 1 C 1.000 -> G 0.924 Branch 45: 62..63 5 G 0.826 -> C 0.948 Branch 46: 63..64 6 C 0.869 -> G 1.000 Branch 47: 64..65 Branch 48: 65..66 Branch 49: 66..67 Branch 50: 67..29 (H031) 8 G 1.000 -> C Branch 51: 67..31 (H005) 10 C 1.000 -> G Branch 52: 66..68 4 G 1.000 -> C 0.981 Branch 53: 68..25 (H032) 7 G 0.964 -> C Branch 54: 68..8 (H016) Branch 55: 65..20 (H008) Branch 56: 64..15 (H024) 9 G 1.000 -> C Branch 57: 63..3 (H004) Branch 58: 62..26 (H025) Branch 59: 60..36 (OUTG) 11 G 1.000 -> C Branch 60: 41..23 (H035) 10 C 0.999 -> G Branch 61: 40..18 (H007) Branch 62: 39..69 Branch 63: 69..2 (H026) 1 C 0.848 -> G Branch 64: 69..7 (H023) Branch 65: 38..30 (H012) Branch 66: 37..70 5 G 0.979 -> C 0.930 Branch 67: 70..27 (H021) 1 C 0.847 -> G 8 G 0.816 -> C Branch 68: 70..9 (H002) Branch 69: 37..17 (H009) 8 G 0.952 -> C List of extant and reconstructed sequences H019 GCGGCGCCCC G H026 GCCCGCGGGC G H004 GCGGCCGGGC G H020 CGGGGCCCCG G H034 GCGGGCCCCG G H027 CCCCGGCCCG G H023 CCCCGCGGGC G H016 GCGCCGGGGC G H002 CCCCCGGGGC G H015 CGGGGCCCGC G H006 CGGGGCGGGC G H001 CGGGGCCCCC G H010 CCGCGCCCCG G H028 CGGGGCCGCC G H024 GCGGCGGGCC G H017 CCCCGCCCCC G H009 CCCCGGGCGC G H007 CCGCGCGGGC G H033 GCGCGCCCCG G H008 GCGGCGGGGC G H029 GCGGGCCCCC G H003 CCGCCCCCCC G H035 CCGCGCGGGG G H013 GCGGCGCCCG G H032 GCGCCGCGGC G H025 GCGGGCGGGC G H021 GCCCCGGCGC G H030 CCGGGCGGCC G H031 GCGGCGGCGC G H012 CCCCGGGGGC G H005 GCGGCGGGGG G H011 CCGCGCCCCC G H022 GCGGCCCCCG G H014 GCCCGCCCCC G H018 CCGGGCCCCC G OUTG CCGGGCGGGC C node #37 CCCCGGGGGC G node #38 CCCCGGGGGC G node #39 CCCCGCGGGC G node #40 CCGCGCGGGC G node #41 CCGCGCGGGC G node #42 CCGGGCGGGC G node #43 CCGGGCGGCC G node #44 CGGGGCCGCC G node #45 CGGGGCCCCC G node #46 CGGGGCCCCC G node #47 CGGGGCCCCC G node #48 CCGGGCCCCC G node #49 CCGGGCCCCC G node #50 CCGCGCCCCC G node #51 CCGCGCCCCC G node #52 CCGCGCCCCC G node #53 CCGCGCCCCG G node #54 CCCCGCCCCC G node #55 CCCCGCCCCC G node #56 GCGGGCCCCC G node #57 GCGGGCCCCG G node #58 GCGGCCCCCG G node #59 GCGGCGCCCG G node #60 CCGGGCGGGC G node #61 CCGGGCGGGC G node #62 GCGGGCGGGC G node #63 GCGGCCGGGC G node #64 GCGGCGGGGC G node #65 GCGGCGGGGC G node #66 GCGGCGGGGC G node #67 GCGGCGGGGC G node #68 GCGCCGGGGC G node #69 CCCCGCGGGC G node #70 CCCCCGGGGC G Overall accuracy of the 34 ancestral sequences: 0.96430 0.96430 0.96673 0.99030 0.99030 0.99897 0.96110 0.94544 0.97923 0.97923 0.97923 0.99936 0.99936 0.99992 0.99992 0.99992 0.99410 0.99918 0.99918 0.98743 0.98479 0.98822 0.99134 0.99897 0.99897 0.97480 0.98281 1.00000 1.00000 1.00000 1.00000 0.99492 0.98441 0.95925 for a site. 0.64910 0.64910 0.66689 0.89584 0.89584 0.98872 0.62168 0.49918 0.77199 0.77199 0.77199 0.99302 0.99302 0.99913 0.99913 0.99913 0.93600 0.99103 0.99103 0.86669 0.83945 0.87553 0.90582 0.98872 0.98872 0.74263 0.81876 0.99995 0.99995 0.99995 0.99995 0.94489 0.83161 0.61662 for the sequence. Counts of changes at sites 1 CG CG CG CG CG CG (6) 2 CG CG GC (3) 3 CG GC (2) 4 CG GC GC (3) 5 GC GC GC GC (4) 6 CG GC CG CG (4) 7 GC GC (2) 8 GC GC GC GC (4) 9 CG GC GC (3) 10 GC CG CG CG CG CG CG (7) 11 GC (1) ALTree-v1.3.2/test/paml/unrooted_present/association/rst1000066400000000000000000000000011412112337500234440ustar00rootroot00000000000000 ALTree-v1.3.2/test/paml/unrooted_present/association/rub000066400000000000000000000355011412112337500233600ustar00rootroot00000000000000 TREE # 1 1 114.9094 191.446920 x: 0.80189 0.86355 1.00000 0.99305 0.89074 0.85919 0.70270 0.75174 0.74732 0.88922 0.84271 0.64707 0.57975 0.85413 0.86112 0.86851 0.77260 0.50918 0.42855 0.81496 0.71039 0.53319 0.76726 0.74305 0.74626 0.78847 0.82586 0.87508 0.51039 0.47093 0.87785 0.76907 0.53027 0.67918 1.00000 0.21839 0.24112 0.21870 0.24735 2 35.7482 180.282991 x: 0.60638 0.75031 0.91597 0.96161 0.91469 0.89863 0.78734 0.81227 0.84651 1.00000 0.98309 0.79766 0.70321 0.86828 0.92995 0.91683 0.74822 0.55330 0.44962 0.79545 0.71055 0.54220 0.73374 0.72619 0.74825 0.75977 0.79572 0.85004 0.56245 0.55610 0.89935 0.73261 0.48828 0.65383 1.00000 0.21839 0.24112 0.21870 0.24735 3 39.2096 178.600236 x: 0.55500 0.73939 0.91041 0.95773 0.93441 0.91006 0.78748 0.80006 0.84199 1.00000 1.00000 0.80649 0.71640 0.86085 0.94060 0.92616 0.74031 0.56059 0.45471 0.78710 0.70829 0.54275 0.72619 0.74652 0.77024 0.76556 0.79645 0.84572 0.58182 0.57891 0.90657 0.72393 0.47968 0.64540 1.00000 0.21839 0.24112 0.21870 0.24735 4 27.2762 174.769630 x: 0.42076 0.82026 0.94820 0.88667 0.99366 0.83049 0.80617 0.79557 0.86716 1.00000 1.00000 0.82582 0.78834 0.84595 1.00000 0.97842 0.70130 0.58890 0.48244 0.77342 0.70965 0.55395 0.69600 0.80490 0.83268 0.75295 0.77519 0.82405 0.64095 0.65367 0.93786 0.69273 0.46149 0.60485 1.00000 0.21839 0.24112 0.21870 0.24735 5 12.1266 174.514561 x: 0.41547 0.82949 0.94094 0.88163 1.00000 0.83355 0.80451 0.79395 0.86516 1.00000 1.00000 0.82666 0.79703 0.84356 1.00000 0.98686 0.69532 0.59082 0.48705 0.77445 0.71091 0.55602 0.69294 0.80542 0.83391 0.74780 0.77273 0.82394 0.64505 0.66005 0.94203 0.68995 0.46107 0.60029 1.00000 0.21839 0.24112 0.21870 0.24735 6 16.2354 174.212559 x: 0.41056 0.84010 0.93308 0.88836 1.00000 0.83485 0.80441 0.79469 0.86789 1.00000 1.00000 0.82655 0.80741 0.84140 1.00000 1.00000 0.68648 0.59233 0.49438 0.77292 0.71105 0.55773 0.68912 0.80901 0.83956 0.74903 0.77485 0.82371 0.65222 0.66976 0.94852 0.68631 0.45976 0.59471 1.00000 0.21839 0.24112 0.21870 0.24735 7 11.6723 173.108877 x: 0.31191 0.94409 0.84996 0.92905 1.00000 0.83020 0.87186 0.80407 0.87324 1.00000 1.00000 0.80127 0.82279 0.81341 1.00000 1.00000 0.60786 0.56252 0.56538 0.75462 0.70188 0.55931 0.67567 0.81739 0.86575 0.76618 0.78112 0.77786 0.66549 0.69793 1.00000 0.67450 0.46263 0.56482 1.00000 0.21839 0.24112 0.21870 0.24735 8 8.2869 172.274253 x: 0.31548 1.00000 0.80011 0.89267 1.00000 0.83067 0.92049 0.77063 0.85964 1.00000 1.00000 0.83363 0.82751 0.80298 1.00000 1.00000 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0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46506 1.00000 1.00000 0.66706 0.70715 0.69676 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735 36 0.0000 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46506 1.00000 1.00000 0.66706 0.70715 0.69676 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735 ALTree-v1.3.2/test/paml/unrooted_present/association/run_altree000077500000000000000000000010471412112337500247310ustar00rootroot00000000000000#!/bin/sh -x # To obtain the apomorphy list corresponding to the tree whose topology # has been reconstructed by phyML # paml uses the baseml.ctl file as the parameter file baseml # To perform the association test # The outgroup must be sepcified for the association analysis (the tree # must be rooted). The outgroup is kept for the association test) RA=../../../.. env PERL5LIB=$RA/blib/lib:$RA/blib/arch:$RA \ $RA/progs/altree -i rst -j nb_cas_control.txt -a -t SNP \ --outgroup OUTG -p paml -r 10 -o 1_trio_ML.asso --data-qual qualitative ALTree-v1.3.2/test/paml/unrooted_present/association/trio2.phy000066400000000000000000000014361412112337500244260ustar00rootroot00000000000000 36 10 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC ALTree-v1.3.2/test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt000066400000000000000000000015461412112337500274760ustar00rootroot00000000000000(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896); ALTree-v1.3.2/test/paml/unrooted_present/localisation/000077500000000000000000000000001412112337500230065ustar00rootroot00000000000000ALTree-v1.3.2/test/paml/unrooted_present/localisation/2base.t000066400000000000000000000131431412112337500241710ustar00rootroot00000000000000 36 H019 H026 9.0000 H004 nan nan H020 9.0000 9.0000 9.0000 H034 nan 9.0000 nan nan H027 9.0000 9.0000 9.0000 nan nan H023 9.0000 nan nan 9.0000 9.0000 9.0000 H016 nan nan nan 9.0000 9.0000 9.0000 nan H002 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan H015 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 H006 9.0000 nan nan nan 9.0000 9.0000 nan 9.0000 9.0000 nan H001 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan nan H010 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan H028 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan nan nan H024 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan H017 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan nan 9.0000 9.0000 H009 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan H007 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan nan nan 9.0000 nan nan H033 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan H008 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan 9.0000 H029 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 nan nan 9.0000 H003 nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan H035 9.0000 nan nan 9.0000 nan 9.0000 nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 nan H013 nan 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 H032 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan H025 9.0000 nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 nan H021 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan 9.0000 9.0000 9.0000 nan nan 9.0000 H030 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan nan nan nan nan 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 H031 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 H012 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan 9.0000 H005 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 H011 nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 H022 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 H014 nan nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan H018 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan OUTG 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan ALTree-v1.3.2/test/paml/unrooted_present/localisation/baseml.ctl000066400000000000000000000032261412112337500247600ustar00rootroot00000000000000 seqfile = et_trio2.phy treefile = trio2.phy_phyml_tree.txt outfile = mlb * main result file noisy = 9 * 0,1,2,3: how much rubbish on the screen verbose = 1 * 1: detailed output, 0: concise output runmode = 0 * 0: user tree; 1: semi-automatic; 2: automatic * 3: StepwiseAddition; (4,5):PerturbationNNI model = 7 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85 * 5:T92, 6:TN93, 7:REV, 8:UNREST, 9:REVu; 10:UNRESTu Mgene = 0 * 0:rates, 1:separate; 2:diff pi, 3:diff kapa, 4:all diff * ndata = 1 clock = 1 * 0:no clock, 1:clock; 2:local clock; 3:CombinedAnalysis fix_kappa = 0 * 0: estimate kappa; 1: fix kappa at value below kappa = 5 * initial or fixed kappa fix_alpha = 1 * 0: estimate alpha; 1: fix alpha at value below alpha = 0 * initial or fixed alpha, 0:infinity (constant rate) Malpha = 0 * 1: different alpha's for genes, 0: one alpha ncatG = 5 * # of categories in the dG, AdG, or nparK models of rates nparK = 0 * rate-class models. 1:rK, 2:rK&fK, 3:rK&MK(1/K), 4:rK&MK nhomo = 0 * 0 & 1: homogeneous, 2: kappa for branches, 3: N1, 4: N2 getSE = 0 * 0: don't want them, 1: want S.E.s of estimates RateAncestor = 1 * (0,1,2): rates (alpha>0) or ancestral states Small_Diff = 7e-6 cleandata = 0 * remove sites with ambiguity data (1:yes, 0:no)? * icode = 0 * (with RateAncestor=1. try "GC" in data,model=4,Mgene=4) * fix_blength = -1 * 0: ignore, -1: random, 1: initial, 2: fixed method = 0 * 0: simultaneous; 1: one branch at a time ALTree-v1.3.2/test/paml/unrooted_present/localisation/et_trio2.phy000066400000000000000000000012161412112337500252570ustar00rootroot0000000000000036 11 H019 GCGGCGCCCC? H026 GCCCGCGGGCG H004 GCGGCCGGGCG H020 CGGGGCCCCGC H034 GCGGGCCCCGG H027 CCCCGGCCCG? H023 CCCCGCGGGCC H016 GCGCCGGGGC? H002 CCCCCGGGGCG H015 CGGGGCCCGCC H006 CGGGGCGGGC? H001 CGGGGCCCCCC H010 CCGCGCCCCGC H028 CGGGGCCGCCG H024 GCGGCGGGCCG H017 CCCCGCCCCCC H009 CCCCGGGCGCC H007 CCGCGCGGGCC H033 GCGCGCCCCGC H008 GCGGCGGGGCG H029 GCGGGCCCCCC H003 CCGCCCCCCCG H035 CCGCGCGGGGG H013 GCGGCGCCCGG H032 GCGCCGCGGCC H025 GCGGGCGGGC? H021 GCCCCGGCGCG H030 CCGGGCGGCC? H031 GCGGCGGCGCG H012 CCCCGGGGGC? H005 GCGGCGGGGG? H011 CCGCGCCCCCC H022 GCGGCCCCCGG H014 GCCCGCCCCC? H018 CCGGGCCCCC? OUTG CCGGGCGGGC? ALTree-v1.3.2/test/paml/unrooted_present/localisation/lnf000066400000000000000000000016401412112337500235110ustar00rootroot00000000000000 -1 11 11 1 1 1 -21.3504627001 0.0000 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC 2 1 -13.9253593463 0.0000 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC 3 1 -12.1470280971 0.0001 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG 4 1 -15.7042220229 0.0000 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG 5 1 -16.1598302040 0.0000 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG 6 1 -18.4691902274 0.0000 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC 7 1 -12.2943243678 0.0001 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG 8 1 -14.4446212953 0.0000 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG 9 1 -13.8336215444 0.0000 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG 10 1 -24.1672908333 0.0000 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC 11 1 -18.8775789219 0.0000 ?GGCG?C?GC?CCGGCCCCGCGGGC?G?G??CG???ALTree-v1.3.2/test/paml/unrooted_present/localisation/mlb000066400000000000000000000514051412112337500235100ustar00rootroot00000000000000 seed used = 30455833 H019 GCGGCGCCCC ? H026 GCCCGCGGGC G H004 GCGGCCGGGC G H020 CGGGGCCCCG C H034 GCGGGCCCCG G H027 CCCCGGCCCG ? H023 CCCCGCGGGC C H016 GCGCCGGGGC ? H002 CCCCCGGGGC G H015 CGGGGCCCGC C H006 CGGGGCGGGC ? H001 CGGGGCCCCC C H010 CCGCGCCCCG C H028 CGGGGCCGCC G H024 GCGGCGGGCC G H017 CCCCGCCCCC C H009 CCCCGGGCGC C H007 CCGCGCGGGC C H033 GCGCGCCCCG C H008 GCGGCGGGGC G H029 GCGGGCCCCC C H003 CCGCCCCCCC G H035 CCGCGCGGGG G H013 GCGGCGCCCG G H032 GCGCCGCGGC C H025 GCGGGCGGGC ? H021 GCCCCGGCGC G H030 CCGGGCGGCC ? H031 GCGGCGGCGC G H012 CCCCGGGGGC ? H005 GCGGCGGGGG ? H011 CCGCGCCCCC C H022 GCGGCCCCCG G H014 GCCCGCCCCC ? H018 CCGGGCCCCC ? OUTG CCGGGCGGGC ? BASEML (in paml 3.14, January 2004) et_trio2.phy REV Global clock ns = 36 ls = 11 # site patterns = 11 1 1 1 1 1 1 1 1 1 1 1 H019 GCGGCGCCCC ? H026 ..CCGCGGG. G H004 .....CGGG. G H020 CG..GC...G C H034 ....GC...G G H027 C.CCG....G ? H023 C.CCGCGGG. C H016 ...C..GGG. ? H002 C.CC..GGG. G H015 CG..GC..G. C H006 CG..GCGGG. ? H001 CG..GC.... C H010 C..CGC...G C H028 CG..GC.G.. G H024 ......GG.. G H017 C.CCGC.... C H009 C.CCG.G.G. C H007 C..CGCGGG. C H033 ...CGC...G C H008 ......GGG. G H029 ....GC.... C H003 C..C.C.... G H035 C..CGCGGGG G H013 .........G G H032 ...C...GG. C H025 ....GCGGG. ? H021 ..CC..G.G. G H030 C...GCGG.. ? H031 ......G.G. G H012 C.CCG.GGG. ? H005 ......GGGG ? H011 C..CGC.... C H022 .....C...G G H014 ..CCGC.... ? H018 C...GC.... ? OUTG C...GCGGG. ? Frequencies.. T C A G H019 0.0000 0.6000 0.0000 0.4000 H026 0.0000 0.4545 0.0000 0.5455 H004 0.0000 0.3636 0.0000 0.6364 H020 0.0000 0.5455 0.0000 0.4545 H034 0.0000 0.4545 0.0000 0.5455 H027 0.0000 0.7000 0.0000 0.3000 H023 0.0000 0.6364 0.0000 0.3636 H016 0.0000 0.4000 0.0000 0.6000 H002 0.0000 0.5455 0.0000 0.4545 H015 0.0000 0.5455 0.0000 0.4545 H006 0.0000 0.3000 0.0000 0.7000 H001 0.0000 0.6364 0.0000 0.3636 H010 0.0000 0.7273 0.0000 0.2727 H028 0.0000 0.4545 0.0000 0.5455 H024 0.0000 0.3636 0.0000 0.6364 H017 0.0000 0.9091 0.0000 0.0909 H009 0.0000 0.6364 0.0000 0.3636 H007 0.0000 0.5455 0.0000 0.4545 H033 0.0000 0.6364 0.0000 0.3636 H008 0.0000 0.2727 0.0000 0.7273 H029 0.0000 0.6364 0.0000 0.3636 H003 0.0000 0.8182 0.0000 0.1818 H035 0.0000 0.3636 0.0000 0.6364 H013 0.0000 0.4545 0.0000 0.5455 H032 0.0000 0.5455 0.0000 0.4545 H025 0.0000 0.3000 0.0000 0.7000 H021 0.0000 0.5455 0.0000 0.4545 H030 0.0000 0.5000 0.0000 0.5000 H031 0.0000 0.3636 0.0000 0.6364 H012 0.0000 0.5000 0.0000 0.5000 H005 0.0000 0.2000 0.0000 0.8000 H011 0.0000 0.8182 0.0000 0.1818 H022 0.0000 0.5455 0.0000 0.4545 H014 0.0000 0.8000 0.0000 0.2000 H018 0.0000 0.7000 0.0000 0.3000 OUTG 0.0000 0.4000 0.0000 0.6000 Average 0.0000 0.5351 0.0000 0.4649 (Ambiguity characters are used to calculate freqs.) # constant sites: 0 (0.00%) Distances: TN93 (kappa) (alpha set at 0.00) This matrix is not used in later m.l. analysis. (Pairwise deletion.) H019 H026 9.0000( 0.0000) H004 nan(999.0000) nan(999.0000) H020 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H034 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H027 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H023 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H016 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H002 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H015 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H006 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H001 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H010 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H028 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) H024 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H017 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) H009 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H007 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H033 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H008 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H029 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H003 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H035 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H013 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H032 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) H025 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) H021 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H030 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H031 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H012 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) H005 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H011 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) H022 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) H014 nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) H018 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) OUTG 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) TREE # 1: (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); MP score: -1.00 lnL(ntime: 34 np: 39): -181.373530 +0.000000 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 0.36618 0.36618 0.31657 0.27571 0.27571 0.24541 0.22012 0.17854 0.14232 0.14232 0.14232 0.13022 0.13022 0.10183 0.10183 0.10183 0.03847 0.06635 0.06635 0.10198 0.05186 0.03289 0.01540 0.24010 0.24010 0.15534 0.10849 0.08025 0.08025 0.08025 0.08025 0.03330 0.16213 0.11689 1.00000 0.21839 0.24112 0.21870 0.24735 tree length = 5.72033 (((((((((((((((((H010, H033), (H027, (H017, H014))), H011), H003), H018), (((H022, (H013, H019)), H034), H029)), H020), H001), H015), H028), H030), ((H006, ((((((H031, H005), (H032, H016)), H008), H024), H004), H025)), OUTG)), H035), H007), (H026, H023)), H012), (H021, H002), H009); (((((((((((((((((H010: 0.038473, H033: 0.038473): 0.063358, (H027: 0.066349, (H017: 0.066348, H014: 0.066348): 0.000001): 0.035483): 0.000000, H011: 0.101831): 0.000000, H003: 0.101831): 0.028393, H018: 0.130224): 0.000000, (((H022: 0.032888, (H013: 0.015402, H019: 0.015402): 0.017485): 0.018969, H034: 0.051857): 0.050124, H029: 0.101981): 0.028243): 0.012091, H020: 0.142315): 0.000000, H001: 0.142315): 0.000000, H015: 0.142316): 0.036222, H028: 0.178537): 0.041581, H030: 0.220119): 0.025287, ((H006: 0.240097, ((((((H031: 0.080251, H005: 0.080251): 0.000000, (H032: 0.033304, H016: 0.033304): 0.046948): 0.000000, H008: 0.080251): 0.000000, H024: 0.080251): 0.028235, H004: 0.108486): 0.046856, H025: 0.155343): 0.084754): 0.000000, OUTG: 0.240097): 0.005308): 0.030304, H035: 0.275709): 0.000000, H007: 0.275709): 0.040862, (H026: 0.162133, H023: 0.162133): 0.154438): 0.049611, H012: 0.366183): 0.000000, (H021: 0.116893, H002: 0.116893): 0.249290, H009: 0.366183); Detailed output identifying parameters Parameters in the rate matrix (REV) (Yang 1994 J Mol Evol 39:105-111): Rate parameters: 1.00000 0.21839 0.24112 0.21870 0.24735 Base frequencies: 0.00000 0.53506 0.00000 0.46494 Rate matrix Q, Average Ts/Tv = 0.0000 -5.258684 4.347769 0.000000 0.910915 0.000000 -0.934466 0.000000 0.934466 0.000000 0.950863 -4.728782 3.777919 0.000000 1.075419 0.000000 -1.075419 ALTree-v1.3.2/test/paml/unrooted_present/localisation/nb_cas_controls.txt000066400000000000000000000010421412112337500267140ustar00rootroot00000000000000H019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 OUTG m004 c004 ALTree-v1.3.2/test/paml/unrooted_present/localisation/rst000066400000000000000000000326761412112337500235570ustar00rootroot00000000000000Supplemental results for BASEML seqf: et_trio2.phy treef: trio2.phy_phyml_tree.txt TREE # 1 Ancestral reconstruction by BASEML. (((((((((((((((((H010: 0.038473, H033: 0.038473): 0.063358, (H027: 0.066349, (H017: 0.066348, H014: 0.066348): 0.000001): 0.035483): 0.000000, H011: 0.101831): 0.000000, H003: 0.101831): 0.028393, H018: 0.130224): 0.000000, (((H022: 0.032888, (H013: 0.015402, H019: 0.015402): 0.017485): 0.018969, H034: 0.051857): 0.050124, H029: 0.101981): 0.028243): 0.012091, H020: 0.142315): 0.000000, H001: 0.142315): 0.000000, H015: 0.142316): 0.036222, H028: 0.178537): 0.041581, H030: 0.220119): 0.025287, ((H006: 0.240097, ((((((H031: 0.080251, H005: 0.080251): 0.000000, (H032: 0.033304, H016: 0.033304): 0.046948): 0.000000, H008: 0.080251): 0.000000, H024: 0.080251): 0.028235, H004: 0.108486): 0.046856, H025: 0.155343): 0.084754): 0.000000, OUTG: 0.240097): 0.005308): 0.030304, H035: 0.275709): 0.000000, H007: 0.275709): 0.040862, (H026: 0.162133, H023: 0.162133): 0.154438): 0.049611, H012: 0.366183): 0.000000, (H021: 0.116893, H002: 0.116893): 0.249290, H009: 0.366183); (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17 tree with node labels for Rod Page's TreeView (((((((((((((((((13_H010: 0.038473, 19_H033: 0.038473) 53 : 0.063358, (6_H027: 0.066349, (16_H017: 0.066348, 34_H014: 0.066348) 55 : 0.000001) 54 : 0.035483) 52 : 0.000000, 32_H011: 0.101831) 51 : 0.000000, 22_H003: 0.101831) 50 : 0.028393, 35_H018: 0.130224) 49 : 0.000000, (((33_H022: 0.032888, (24_H013: 0.015402, 1_H019: 0.015402) 59 : 0.017485) 58 : 0.018969, 5_H034: 0.051857) 57 : 0.050124, 21_H029: 0.101981) 56 : 0.028243) 48 : 0.012091, 4_H020: 0.142315) 47 : 0.000000, 12_H001: 0.142315) 46 : 0.000000, 10_H015: 0.142316) 45 : 0.036222, 14_H028: 0.178537) 44 : 0.041581, 28_H030: 0.220119) 43 : 0.025287, ((11_H006: 0.240097, ((((((29_H031: 0.080251, 31_H005: 0.080251) 67 : 0.000000, (25_H032: 0.033304, 8_H016: 0.033304) 68 : 0.046948) 66 : 0.000000, 20_H008: 0.080251) 65 : 0.000000, 15_H024: 0.080251) 64 : 0.028235, 3_H004: 0.108486) 63 : 0.046856, 26_H025: 0.155343) 62 : 0.084754) 61 : 0.000000, 36_OUTG: 0.240097) 60 : 0.005308) 42 : 0.030304, 23_H035: 0.275709) 41 : 0.000000, 18_H007: 0.275709) 40 : 0.040862, (2_H026: 0.162133, 7_H023: 0.162133) 69 : 0.154438) 39 : 0.049611, 30_H012: 0.366183) 38 : 0.000000, (27_H021: 0.116893, 9_H002: 0.116893) 70 : 0.249290, 17_H009: 0.366183) 37 ; Nodes 37 to 70 are ancestral Unreliable at sites with alignment gaps (1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650). Prob of best character at each node, listed by site Site Freq Data: 1 1 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC: C(0.987) C(0.987) C(0.991) C(0.999) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(0.937) C(0.997) C(0.997) G(0.852) G(0.997) G(1.000) G(1.000) C(0.995) C(0.995) G(0.921) G(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.856) C(0.789) 2 1 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC: C(0.998) C(0.998) C(0.999) C(0.998) C(0.998) C(0.989) C(0.923) G(0.557) G(0.623) G(0.623) G(0.623) C(0.993) C(0.993) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(1.000) C(1.000) C(1.000) C(0.989) C(0.989) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.996) C(0.996) 3 1 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG: C(0.889) C(0.889) C(0.730) G(0.966) G(0.966) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.991) C(0.991) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.957) C(0.991) 4 1 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG: C(0.983) C(0.983) C(0.963) C(0.871) C(0.871) G(0.991) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(0.998) G(0.998) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.996) G(0.996) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.975) C(0.991) C(0.996) 5 1 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG: G(0.975) G(0.975) G(0.996) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.994) G(0.884) C(0.972) C(1.000) G(0.999) G(0.999) G(0.801) C(0.948) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.996) C(0.947) 6 1 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC: G(0.662) G(0.662) C(0.906) C(0.994) C(0.994) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.997) C(0.997) C(1.000) C(0.994) C(0.958) G(0.988) C(0.999) C(0.999) C(0.954) C(0.802) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.982) G(0.981) 7 1 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG: G(0.998) G(0.998) G(0.999) G(1.000) G(1.000) G(0.999) G(0.901) C(0.874) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.999) G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.958) G(0.996) G(0.997) 8 1 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG: G(0.951) G(0.951) G(0.993) G(1.000) G(1.000) G(1.000) G(0.980) G(0.822) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.995) G(0.779) 9 1 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG: G(0.998) G(0.998) G(0.999) G(0.999) G(0.999) G(0.991) C(0.697) C(0.955) C(0.998) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.996) G(0.996) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.996) G(0.997) 10 1 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC: C(0.998) C(0.998) C(0.999) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(0.999) G(0.978) C(0.997) C(0.997) C(0.945) G(0.958) G(0.974) G(0.959) C(1.000) C(1.000) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.996) C(0.996) 11 1 ?GGCG?C?GC?CCGGCCCCGCGGGC?G?G??CG???: G(0.743) G(0.743) G(0.753) G(0.760) G(0.760) G(0.764) G(0.696) G(0.587) C(0.995) C(0.995) C(0.995) C(0.995) C(0.995) C(0.999) C(0.999) C(0.999) C(1.000) C(0.997) C(0.997) C(0.939) G(0.982) G(0.999) G(0.999) G(0.772) G(0.772) G(0.911) G(0.994) G(0.999) G(0.999) G(0.999) G(0.999) C(0.587) G(0.690) G(0.985) Summary of changes along branches. Check root for directions of change. Branch 1: 37..38 Branch 2: 38..39 6 G 0.662 -> C 0.906 Branch 3: 39..40 3 C 0.730 -> G 0.966 Branch 4: 40..41 Branch 5: 41..42 4 C 0.871 -> G 0.991 Branch 6: 42..43 9 G 0.991 -> C 0.697 Branch 7: 43..44 2 C 0.923 -> G 0.557 7 G 0.901 -> C 0.874 Branch 8: 44..45 8 G 0.822 -> C 0.999 11 G 0.587 -> C 0.995 Branch 9: 45..46 Branch 10: 46..47 Branch 11: 47..48 2 G 0.623 -> C 0.993 Branch 12: 48..49 Branch 13: 49..50 4 G 0.998 -> C 0.999 Branch 14: 50..51 Branch 15: 51..52 Branch 16: 52..53 10 C 0.999 -> G 0.978 Branch 17: 53..13 (H010) Branch 18: 53..19 (H033) 1 C 0.937 -> G Branch 19: 52..54 3 G 1.000 -> C 0.991 Branch 20: 54..6 (H027) 6 C 0.997 -> G 10 C 0.997 -> G 11 C 0.997 -> ? Branch 21: 54..55 Branch 22: 55..16 (H017) Branch 23: 55..34 (H014) 1 C 0.997 -> G 11 C 0.997 -> ? Branch 24: 51..32 (H011) Branch 25: 50..22 (H003) 5 G 1.000 -> C 11 C 0.999 -> G Branch 26: 49..35 (H018) 11 C 0.995 -> ? Branch 27: 48..56 1 C 0.998 -> G 0.852 Branch 28: 56..57 10 C 0.945 -> G 0.958 11 C 0.939 -> G 0.982 Branch 29: 57..58 5 G 0.884 -> C 0.972 Branch 30: 58..33 (H022) Branch 31: 58..59 6 C 0.958 -> G 0.988 Branch 32: 59..24 (H013) Branch 33: 59..1 (H019) 10 G 0.959 -> C 11 G 0.999 -> ? Branch 34: 57..5 (H034) Branch 35: 56..21 (H029) Branch 36: 47..4 (H020) 10 C 1.000 -> G Branch 37: 46..12 (H001) Branch 38: 45..10 (H015) 9 C 0.998 -> G Branch 39: 44..14 (H028) Branch 40: 43..28 (H030) 11 G 0.696 -> ? Branch 41: 42..60 Branch 42: 60..61 Branch 43: 61..11 (H006) 2 C 0.989 -> G 11 G 0.772 -> ? Branch 44: 61..62 1 C 0.995 -> G 0.921 Branch 45: 62..63 5 G 0.801 -> C 0.948 Branch 46: 63..64 6 C 0.802 -> G 1.000 Branch 47: 64..65 Branch 48: 65..66 Branch 49: 66..67 Branch 50: 67..29 (H031) 8 G 1.000 -> C Branch 51: 67..31 (H005) 10 C 1.000 -> G 11 G 0.999 -> ? Branch 52: 66..68 4 G 1.000 -> C 0.975 11 G 0.999 -> C 0.587 Branch 53: 68..25 (H032) 7 G 0.958 -> C Branch 54: 68..8 (H016) 11 C 0.587 -> ? Branch 55: 65..20 (H008) Branch 56: 64..15 (H024) 9 G 1.000 -> C Branch 57: 63..3 (H004) Branch 58: 62..26 (H025) 11 G 0.911 -> ? Branch 59: 60..36 (OUTG) 11 G 0.772 -> ? Branch 60: 41..23 (H035) 10 C 0.998 -> G Branch 61: 40..18 (H007) 11 G 0.760 -> C Branch 62: 39..69 Branch 63: 69..2 (H026) 1 C 0.856 -> G Branch 64: 69..7 (H023) 11 G 0.690 -> C Branch 65: 38..30 (H012) 11 G 0.743 -> ? Branch 66: 37..70 5 G 0.975 -> C 0.947 Branch 67: 70..27 (H021) 1 C 0.789 -> G 8 G 0.779 -> C Branch 68: 70..9 (H002) Branch 69: 37..17 (H009) 8 G 0.951 -> C 11 G 0.743 -> C List of extant and reconstructed sequences H019 GCGGCGCCCC ? H026 GCCCGCGGGC G H004 GCGGCCGGGC G H020 CGGGGCCCCG C H034 GCGGGCCCCG G H027 CCCCGGCCCG ? H023 CCCCGCGGGC C H016 GCGCCGGGGC ? H002 CCCCCGGGGC G H015 CGGGGCCCGC C H006 CGGGGCGGGC ? H001 CGGGGCCCCC C H010 CCGCGCCCCG C H028 CGGGGCCGCC G H024 GCGGCGGGCC G H017 CCCCGCCCCC C H009 CCCCGGGCGC C H007 CCGCGCGGGC C H033 GCGCGCCCCG C H008 GCGGCGGGGC G H029 GCGGGCCCCC C H003 CCGCCCCCCC G H035 CCGCGCGGGG G H013 GCGGCGCCCG G H032 GCGCCGCGGC C H025 GCGGGCGGGC ? H021 GCCCCGGCGC G H030 CCGGGCGGCC ? H031 GCGGCGGCGC G H012 CCCCGGGGGC ? H005 GCGGCGGGGG ? H011 CCGCGCCCCC C H022 GCGGCCCCCG G H014 GCCCGCCCCC ? H018 CCGGGCCCCC ? OUTG CCGGGCGGGC ? node #37 CCCCGGGGGC G node #38 CCCCGGGGGC G node #39 CCCCGCGGGC G node #40 CCGCGCGGGC G node #41 CCGCGCGGGC G node #42 CCGGGCGGGC G node #43 CCGGGCGGCC G node #44 CGGGGCCGCC G node #45 CGGGGCCCCC C node #46 CGGGGCCCCC C node #47 CGGGGCCCCC C node #48 CCGGGCCCCC C node #49 CCGGGCCCCC C node #50 CCGCGCCCCC C node #51 CCGCGCCCCC C node #52 CCGCGCCCCC C node #53 CCGCGCCCCG C node #54 CCCCGCCCCC C node #55 CCCCGCCCCC C node #56 GCGGGCCCCC C node #57 GCGGGCCCCG G node #58 GCGGCCCCCG G node #59 GCGGCGCCCG G node #60 CCGGGCGGGC G node #61 CCGGGCGGGC G node #62 GCGGGCGGGC G node #63 GCGGCCGGGC G node #64 GCGGCGGGGC G node #65 GCGGCGGGGC G node #66 GCGGCGGGGC G node #67 GCGGCGGGGC G node #68 GCGCCGGGGC C node #69 CCCCGCGGGC G node #70 CCCCCGGGGC G Overall accuracy of the 34 ancestral sequences: 0.92564 0.92564 0.93903 0.96221 0.96221 0.97558 0.92659 0.89023 0.96490 0.96490 0.96490 0.99854 0.99854 0.99966 0.99966 0.99966 0.99221 0.99808 0.99808 0.97517 0.98317 0.99119 0.99506 0.97690 0.97690 0.96189 0.97620 0.99989 0.99989 0.99989 0.99989 0.95631 0.94999 0.95031 for a site. 0.39024 0.39024 0.46884 0.63139 0.63139 0.73932 0.39368 0.22377 0.61720 0.61720 0.61720 0.98406 0.98406 0.99626 0.99627 0.99626 0.91570 0.97905 0.97905 0.74913 0.82403 0.90618 0.94621 0.75203 0.75203 0.63713 0.75137 0.99876 0.99876 0.99876 0.99876 0.54788 0.53582 0.54717 for the sequence. Counts of changes at sites 1 CG CG CG CG CG CG (6) 2 CG CG GC (3) 3 CG GC (2) 4 CG GC GC (3) 5 GC GC GC GC (4) 6 CG GC CG CG (4) 7 GC GC (2) 8 GC GC GC GC (4) 9 CG GC GC (3) 10 GC CG CG CG CG CG CG (7) 11 G? C? GC C? G? GC GC CG G? G? G? G? C? C? G? GC CG GC (18) ALTree-v1.3.2/test/paml/unrooted_present/localisation/rst1000066400000000000000000000000011412112337500236110ustar00rootroot00000000000000 ALTree-v1.3.2/test/paml/unrooted_present/localisation/rub000066400000000000000000000450161412112337500235270ustar00rootroot00000000000000 TREE # 1 1 133.7663 203.681194 x: 0.83116 0.87035 1.00000 0.97995 0.85619 0.82543 0.68744 0.74857 0.72267 0.87796 0.83042 0.63684 0.56893 0.85791 0.85122 0.86070 0.77600 0.50342 0.42576 0.82258 0.69057 0.53088 0.77194 0.72684 0.73919 0.79019 0.83061 0.88554 0.51176 0.47183 0.87488 0.77383 0.54118 0.68123 1.00000 0.21839 0.24112 0.21870 0.24735 2 35.6176 193.653085 x: 0.69726 0.77831 0.93502 0.95305 0.84692 0.82719 0.75733 0.82699 0.82083 1.00000 0.98416 0.79832 0.70037 0.88351 0.91141 0.90317 0.75464 0.54565 0.44497 0.81456 0.66194 0.53782 0.74169 0.68913 0.73650 0.76466 0.80333 0.87677 0.57571 0.57004 0.89442 0.74146 0.51264 0.65788 1.00000 0.21839 0.24112 0.21870 0.24735 3 25.5072 192.682883 x: 0.67193 0.76986 0.93158 0.95406 0.85693 0.83489 0.75270 0.81814 0.81092 1.00000 1.00000 0.80535 0.71260 0.87890 0.91854 0.91024 0.74815 0.55229 0.44919 0.80898 0.65429 0.53779 0.73580 0.69962 0.75284 0.76922 0.80358 0.87431 0.59370 0.59149 0.90014 0.73440 0.50804 0.65054 1.00000 0.21839 0.24112 0.21870 0.24735 4 12.3656 189.186188 x: 0.53226 0.84184 0.97682 0.90607 0.91060 0.79789 0.79001 0.84806 0.82990 1.00000 1.00000 0.74883 0.79913 0.83987 1.00000 0.99193 0.66943 0.58992 0.49982 0.81296 0.62403 0.56117 0.68796 0.72790 0.81308 0.71021 0.73510 0.81993 0.66719 0.68915 0.95245 0.68969 0.50634 0.54431 1.00000 0.21839 0.24112 0.21870 0.24735 5 16.7075 188.951289 x: 0.52886 0.84998 0.97690 0.89972 0.91345 0.79591 0.79041 0.84604 0.82915 1.00000 1.00000 0.75470 0.80576 0.84013 1.00000 1.00000 0.66245 0.59098 0.50471 0.81514 0.62343 0.56369 0.68500 0.72884 0.81640 0.70857 0.73576 0.82182 0.67150 0.69403 0.95698 0.68750 0.50768 0.53289 1.00000 0.21839 0.24112 0.21870 0.24735 6 14.1030 187.455217 x: 0.47320 0.88286 0.91235 0.88103 0.95440 0.83684 0.81655 0.84690 0.83177 1.00000 1.00000 0.77109 0.82515 0.81008 1.00000 1.00000 0.59270 0.57362 0.55847 0.80412 0.61448 0.57823 0.66982 0.71752 0.82404 0.70632 0.75409 0.82979 0.67953 0.70669 1.00000 0.68078 0.52152 0.39183 1.00000 0.21839 0.24112 0.21870 0.24735 7 10.2369 186.002567 x: 0.52455 0.88050 0.82774 0.94929 1.00000 0.82767 0.79745 0.84876 0.84592 1.00000 1.00000 0.77673 0.88758 0.81118 1.00000 1.00000 0.51382 0.57421 0.64441 0.74676 0.57459 0.57712 0.64629 0.70566 0.84214 0.71170 0.73690 0.78034 0.71453 0.77564 1.00000 0.65937 0.53707 0.19730 1.00000 0.21839 0.24112 0.21870 0.24735 8 3.1057 185.382228 x: 0.53205 0.89510 0.83778 0.93718 1.00000 0.88975 0.86550 0.84646 0.81155 1.00000 1.00000 0.77628 0.88759 0.77067 1.00000 1.00000 0.50256 0.57127 0.67973 0.78164 0.59023 0.57945 0.63790 0.72320 0.87967 0.72051 0.73360 0.77678 0.75198 0.82328 1.00000 0.64593 0.53174 0.30157 1.00000 0.21839 0.24112 0.21870 0.24735 9 4.6729 183.694279 x: 0.49413 0.99970 0.73564 0.90699 1.00000 0.86362 0.98516 0.74748 0.71295 1.00000 1.00000 0.80525 0.93598 0.76546 1.00000 1.00000 0.41900 0.54889 0.88564 0.80771 0.58354 0.56890 0.59990 0.73913 0.98970 0.70918 0.66050 0.66018 0.86069 1.00000 1.00000 0.59116 0.56596 0.32457 1.00000 0.21839 0.24112 0.21870 0.24735 10 6.6786 183.687904 x: 0.49375 1.00000 0.73572 0.90707 1.00000 0.86362 0.98502 0.74737 0.71309 1.00000 1.00000 0.80533 0.93615 0.76554 1.00000 1.00000 0.41893 0.54893 0.88608 0.80772 0.58350 0.56888 0.59982 0.73925 0.99007 0.70920 0.66049 0.66015 0.86103 1.00000 1.00000 0.59103 0.56598 0.32475 1.00000 0.21839 0.24112 0.21870 0.24735 11 4.9449 183.562472 x: 0.49316 1.00000 0.73837 0.90054 1.00000 0.86313 0.98423 0.75467 0.71243 1.00000 1.00000 0.80683 0.94191 0.76448 1.00000 1.00000 0.42047 0.55190 0.89313 0.80099 0.57977 0.56921 0.59863 0.74303 1.00000 0.70788 0.66271 0.66299 0.87077 1.00000 1.00000 0.58806 0.56701 0.32445 1.00000 0.21839 0.24112 0.21870 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1.00000 1.00000 0.41473 0.51041 0.31894 1.00000 0.21839 0.24112 0.21870 0.24735 40 0.0095 181.373548 x: 0.36622 1.00000 0.86498 0.87054 1.00000 0.89000 0.89718 0.81098 0.79713 1.00000 1.00000 0.91523 1.00000 0.78183 1.00000 1.00000 0.37805 0.65160 0.99998 0.78280 0.50846 0.63428 0.46805 0.97661 1.00000 0.64748 0.69841 0.73996 1.00000 1.00000 1.00000 0.41458 0.51118 0.31919 1.00000 0.21839 0.24112 0.21870 0.24735 41 0.0151 181.373534 x: 0.36622 1.00000 0.86470 0.87085 1.00000 0.89010 0.89689 0.81114 0.79704 1.00000 1.00000 0.91507 1.00000 0.78203 1.00000 1.00000 0.37765 0.65162 0.99999 0.78306 0.50872 0.63415 0.46793 0.97758 1.00000 0.64708 0.69816 0.73974 1.00000 1.00000 1.00000 0.41471 0.51212 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735 42 0.0134 181.373531 x: 0.36619 1.00000 0.86447 0.87096 1.00000 0.89008 0.89695 0.81115 0.79710 1.00000 1.00000 0.91507 1.00000 0.78195 1.00000 1.00000 0.37761 0.65157 0.99999 0.78313 0.50864 0.63413 0.46803 0.97803 1.00000 0.64720 0.69835 0.73981 1.00000 1.00000 1.00000 0.41485 0.51231 0.31919 1.00000 0.21839 0.24112 0.21870 0.24735 43 0.0050 181.373530 x: 0.36619 1.00000 0.86448 0.87096 1.00000 0.89009 0.89697 0.81108 0.79714 1.00000 1.00000 0.91504 1.00000 0.78197 1.00000 1.00000 0.37774 0.65153 0.99999 0.78308 0.50843 0.63417 0.46823 0.97825 1.00000 0.64707 0.69834 0.73972 1.00000 1.00000 1.00000 0.41496 0.51228 0.31921 1.00000 0.21839 0.24112 0.21870 0.24735 44 0.0030 181.373530 x: 0.36618 1.00000 0.86453 0.87092 1.00000 0.89009 0.89696 0.81108 0.79712 1.00000 1.00000 0.91504 1.00000 0.78198 1.00000 1.00000 0.37781 0.65154 0.99999 0.78314 0.50848 0.63421 0.46833 0.97835 1.00000 0.64702 0.69837 0.73973 1.00000 1.00000 1.00000 0.41500 0.51219 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735 45 0.0011 181.373530 x: 0.36618 1.00000 0.86452 0.87092 1.00000 0.89009 0.89696 0.81110 0.79712 1.00000 1.00000 0.91504 1.00000 0.78197 1.00000 1.00000 0.37781 0.65155 0.99999 0.78312 0.50849 0.63420 0.46833 0.97837 1.00000 0.64700 0.69837 0.73974 1.00000 1.00000 1.00000 0.41499 0.51215 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735 46 0.0007 181.373530 x: 0.36618 1.00000 0.86452 0.87092 1.00000 0.89009 0.89696 0.81110 0.79712 1.00000 1.00000 0.91504 1.00000 0.78197 1.00000 1.00000 0.37781 0.65155 0.99999 0.78312 0.50849 0.63420 0.46833 0.97837 1.00000 0.64700 0.69837 0.73974 1.00000 1.00000 1.00000 0.41499 0.51215 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735 ALTree-v1.3.2/test/paml/unrooted_present/localisation/run-prog000077500000000000000000000011661412112337500245110ustar00rootroot00000000000000#!/bin/sh -x # To obtain the file containing the sequences WITH the character S ../../../../altree-add-S -i trio2.phy -j \ nb_cas_controls.txt -o et_trio2.phy -e 1 -t DNA -p 0.5 # paml is run on the tree reconstructed by phyml WITHOUT the character # S (file "trio2.phy_phyml_tree.txt" as first input file), but the # character S is included in the apomorphy list (file "et_trio2.phy as # second input file) baseml # To perform the localisation test ../../../../altree -i rst \ -j nb_cas_control.txt -t DNA -p paml --tree-to-analyse 1 \ --s-site-number 11 --s-site-characters "C->G" \ --co-evo double -l -o trio2.loc ALTree-v1.3.2/test/paml/unrooted_present/localisation/trio2.loc000066400000000000000000000020431412112337500245430ustar00rootroot00000000000000Localisation method using S-character Results: site number 8 sens C-->G V_i = 1.98507947965328 site number 5 sens G-->C V_i = 1.68559076178538 site number 4 sens C-->G V_i = 1.18644749469062 site number 10 sens C-->G V_i = 0.7974522228289 site number 7 sens G-->C V_i = -0.328797974610715 site number 3 sens G-->C V_i = -0.43495883620084 site number 3 sens C-->G V_i = -0.43495883620084 site number 8 sens G-->C V_i = -0.464990554975277 site number 9 sens G-->C V_i = -0.493196961916072 site number 2 sens C-->G V_i = -0.493196961916072 site number 4 sens G-->C V_i = -0.493196961916072 site number 7 sens C-->G V_i = -0.519875244910036 site number 6 sens C-->G V_i = -0.545249756806271 site number 1 sens C-->G V_i = -0.569494797451499 site number 9 sens C-->G V_i = -0.569494797451499 site number 2 sens G-->C V_i = -0.569494797451499 site number 6 sens G-->C V_i = -0.677834389404565 site number 5 sens C-->G V_i = -0.735214622093808 site number 1 sens G-->C V_i = -0.900450337781496 site number 10 sens G-->C V_i = -0.929981109950554 ALTree-v1.3.2/test/paml/unrooted_present/localisation/trio2.phy000066400000000000000000000014361412112337500245730ustar00rootroot00000000000000 36 10 H019 GCGGCGCCCC H026 GCCCGCGGGC H004 GCGGCCGGGC H020 CGGGGCCCCG H034 GCGGGCCCCG H027 CCCCGGCCCG H023 CCCCGCGGGC H016 GCGCCGGGGC H002 CCCCCGGGGC H015 CGGGGCCCGC H006 CGGGGCGGGC H001 CGGGGCCCCC H010 CCGCGCCCCG H028 CGGGGCCGCC H024 GCGGCGGGCC H017 CCCCGCCCCC H009 CCCCGGGCGC H007 CCGCGCGGGC H033 GCGCGCCCCG H008 GCGGCGGGGC H029 GCGGGCCCCC H003 CCGCCCCCCC H035 CCGCGCGGGG H013 GCGGCGCCCG H032 GCGCCGCGGC H025 GCGGGCGGGC H021 GCCCCGGCGC H030 CCGGGCGGCC H031 GCGGCGGCGC H012 CCCCGGGGGC H005 GCGGCGGGGG H011 CCGCGCCCCC H022 GCGGCCCCCG H014 GCCCGCCCCC H018 CCGGGCCCCC OUTG CCGGGCGGGC ALTree-v1.3.2/test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt000066400000000000000000000015461412112337500276430ustar00rootroot00000000000000(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896); ALTree-v1.3.2/test/paup/000077500000000000000000000000001412112337500147425ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/ancestor_absent/000077500000000000000000000000001412112337500201145ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/ancestor_absent/association/000077500000000000000000000000001412112337500224305ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/ancestor_absent/association/1_caco.asso000066400000000000000000000044751412112337500244560ustar00rootroot00000000000000 /----* H002 (LEVEL: 4) case/control:8/6 | /----* H008 (LEVEL: 5) case/control:9/2 | | Site: 11 Sens: 2-->1 |----* 14 (LEVEL: 4) case/control:13/4 | | Site: 9 Sens: 1-->2 | \----* H014 (LEVEL: 5) case/control:4/2 | Site: 10 Sens: 1-->2 /----* 15 (LEVEL: 3) case/control:57/25 | | Site: 1 Sens: 2-->1 | | Site: 2 Sens: 2-->1 | |----* H009 (LEVEL: 4) case/control:8/2 | | Site: 12 Sens: 2-->1 | \----* H006 (LEVEL: 4) case/control:28/13 | Site: 11 Sens: 2-->1 |----* H007 (LEVEL: 3) case/control:7/13 | Site: 12 Sens: 2-->1 /----* 16 (LEVEL: 2) case/control:70/43 | | Site: 8 Sens: 2-->1 | | Site: 10 Sens: 2-->1 | | Site: 9 Sens: 2-->1 | |----* H012 (LEVEL: 3) case/control:1/4 | | Site: 11 Sens: 2-->1 | \----* H011 (LEVEL: 3) case/control:5/1 /----* 17 (LEVEL: 1) case/control:72/47 | | Site: 6 Sens: 2-->1 | | Site: 7 Sens: 2-->1 | \----* H013 (LEVEL: 2) case/control:2/4 |----* H001 (LEVEL: 1) case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 -----* 20+(19) (LEVEL: 0) case/control:102/74 | | [0] ddl=3 chi2=1.41 p_value_chi2=0.704 | [1] ddl=5 chi2=3.37 p_value_chi2=0.643 | [2] ddl=8 chi2=16.00 p_value_chi2=0.04 | [3] ddl=11 chi2=17.69 p_value_chi2=0.079 | [4] ddl=12 chi2=18.05 p_value_chi2=0.094 | /----* H003 (LEVEL: 2) case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 18 (LEVEL: 1) case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 (LEVEL: 2) case/control:7/7 | Site: 12 Sens: 2-->1 \----* H010 (LEVEL: 1) case/control:7/5 Site: 5 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 ALTree-v1.3.2/test/paup/ancestor_absent/association/caco.paup000066400000000000000000000021201412112337500242170ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=13 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 [H004 222222222222] H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; ancstates *anc vector = 222222222222; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/ancestor_absent/association/nb_cas_control.txt000066400000000000000000000003031412112337500261520ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/ancestor_absent/association/run_altree000077500000000000000000000003341412112337500245160ustar00rootroot00000000000000#!/bin/sh -x #To run paup paup caco.paup #To perform the association test ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso --data-qual qualitative ALTree-v1.3.2/test/paup/ancestor_absent/association/test.res.log000066400000000000000000016223411412112337500247130ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Wed Apr 23 21:53:16 2008 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "anc" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 19 20 0 0 0 17 19 2 2 2 16 17 3 3 3 15 16 2 2 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H013 (6) 17 0 0 0 H001 (7) 19 2 2 2 18 19 1 1 1 H003 (8) 18 1 1 1 H005 (9) 18 1 1 1 H010 (2) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 +---------14 /--------15 \---------- H014 | | | +--------------------- H009 | | | \--------------------- H006 /---------16 | +------------------------------- H007 | | | +------------------------------- H012 /--------17 | | | \------------------------------- H011 | | | \------------------------------------------ H013 /---------19 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------20 \----------------------------------------18 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_17 --> node_16 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 ==> 1 node_19 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 3 1 1.000 2 ==> 1 node_18 --> H003 4 1 1.000 2 ==> 1 node_18 --> H005 12 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 3 16 17 1 1 1 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 2 H001 (7) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | +------14-------- H012 /------15 | | | \-------- H011 | | | +---------------- H009 /------16 | | | \---------------- H006 | | /-------17 \------------------------ H008 | | /------18 \-------------------------------- H014 | | /------19 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------21 | | /-------- H003 | \-----------------------------------------------20 -------22 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H014 (5) 14 1 1 2 H006 (12) 15 1 0 1 H009 (11) 16 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /--------- H008 | /-------14 /--------16 | \--------- H014 | +-------15 | | \------------------ H006 | | | \--------------------------- H009 /-------17 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------18 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 /-------20 | +------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 --> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 16 1 0 1 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------14 | \--------- H009 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 16 1 0 1 H012 (10) 18 1 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------14 | \-------- H009 | /------17 /-------- H008 | | /------15 | | | \-------- H014 /-------18 \------16 | | \---------------- H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 3 16 18 2 2 2 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 15 16 0 0 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 17 18 1 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------14---------- H009 | | | \---------- H006 /--------16 | | /---------- H008 | \---------15 | \---------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 /---------21 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------22 \----------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 2 2 2 15 17 2 2 2 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 16 17 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------14---------- H009 | | | \---------- H006 /--------15 | +--------------------- H008 | | | \--------------------- H014 /---------17 | | /---------- H007 | | | | \-------------------16---------- H012 /--------18 | | | \---------- H011 | | | \------------------------------------------ H013 /---------20 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_17 --> node_16 9 1 0.500 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 2 16 17 1 0 2 15 16 1 1 1 14 15 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 15 1 0 1 H008 (4) 16 1 0 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------14 | \-------- H009 /------15 | \---------------- H006 /------16 | \------------------------ H008 /-------17 | \-------------------------------- H014 | /------19 /-------- H007 | | | | \-------------------------------18-------- H012 /------20 | | | \-------- H011 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 --> 1 node_16 --> H008 11 1 0.333 2 --> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H014 (5) 14 1 1 2 H006 (12) 15 1 0 1 H009 (11) 17 1 0 1 H007 (3) 18 1 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------------- H002 | | /------- H008 /-----16 /------14 | | | \------- H014 | \-----15 /-----17 \--------------- H006 | | /------18 \----------------------------- H009 | | | \------------------------------------ H007 /-----19 | +-------------------------------------------- H012 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 --> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H006 (12) 14 0 0 1 H014 (5) 15 2 1 2 H009 (11) 16 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /--------- H008 | /-------14 /--------16 | \--------- H006 | +-------15 | | \------------------ H014 | | | \--------------------------- H009 /-------17 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------18 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 /-------20 | +------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 --> 2 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 17 1 0 1 H012 (10) 18 1 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------14 | \-------- H009 /------16 | | /-------- H008 | \------15 /------17 \-------- H014 | | /-------18 \------------------------ H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 19 20 0 0 0 17 19 2 2 2 16 17 3 3 3 15 16 2 2 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H014 (5) 15 2 2 2 H009 (11) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H013 (6) 17 0 0 0 H001 (7) 19 2 2 2 18 19 1 1 1 H003 (8) 18 1 1 1 H005 (9) 18 1 1 1 H010 (2) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 +---------14 /--------15 \---------- H006 | | | +--------------------- H014 | | | \--------------------- H009 /---------16 | +------------------------------- H007 | | | +------------------------------- H012 /--------17 | | | \------------------------------- H011 | | | \------------------------------------------ H013 /---------19 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------20 \----------------------------------------18 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_17 --> node_16 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_19 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 3 1 1.000 2 ==> 1 node_18 --> H003 4 1 1.000 2 ==> 1 node_18 --> H005 12 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 3 16 17 1 1 1 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 2 H013 (6) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | +------14-------- H012 /------15 | | | \-------- H011 | | | +---------------- H009 /------16 | | | \---------------- H006 | | /-------17 \------------------------ H008 | | /------18 \-------------------------------- H014 | | /------19 \----------------------------------------- H001 | | | \------------------------------------------------- H013 /------21 | | /-------- H003 | \-----------------------------------------------20 -------22 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------- H002 | | /------- H007 | | /-----15------14------- H012 | | | | | \------- H011 /-----16 | | | \--------------- H009 | | /-----17 \---------------------- H006 | | /------18 \----------------------------- H008 | | /-----19 \------------------------------------ H014 | | /-----20 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 3 16 17 2 2 2 H002 (1) 16 0 0 0 14 16 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 2 H001 (7) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 | | /-------16 \--------- H011 | | | | /--------- H008 | +-------15 /--------17 | \--------- H006 | | | | | \------------------ H009 /-------18 | | | \--------------------------- H014 | | /-------19 \------------------------------------- H013 | | | \---------------------------------------------- H001 /-------21 | | /--------- H003 | \--------------------------------------------20 --------22 \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 1 1 3 17 18 2 2 2 15 17 2 0 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 16 17 0 0 2 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H014 (5) 18 2 0 2 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H006 | | | \---------------- H009 /------17 | | /-------- H007 | | | | \--------------16-------- H012 /-------18 | | | \-------- H011 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_18 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 1 1 1 16 17 2 2 2 15 16 2 2 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H014 (5) 17 2 2 2 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | | \------------------ H009 | /--------16--------------------------- H007 | | | +--------------------------- H012 /-------17 | | | \--------------------------- H011 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 /------16 | | | \---------------- H009 | | /-------17 \------------------------ H006 | | /------18 \-------------------------------- H008 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | /------21--------------------------------------------------------- H013 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 2 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 | | /------17 \---------------- H009 | | | | /-------- H008 /-------18 \--------------16 | | \-------- H006 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------- H002 | | /------- H007 | | /-----15------14------- H012 | | | | | \------- H011 /-----16 | | | \--------------- H009 | | /-----17 \---------------------- H006 | | /------18 \----------------------------- H008 | | /-----19 \------------------------------------ H014 | | /-----20 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------- H007 | /----14 | | \------- H011 /----17 /-----15 | | | \------------- H012 | +-----16 | | \-------------------- H006 /-----18 | | | \--------------------------- H009 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 --> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 /------16 | | | \---------------- H009 | | /-------17 \------------------------ H006 | | /------18 \-------------------------------- H008 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-----------14 | \------- H009 | /-----17 /------- H007 | | /----15 | | | \------- H011 /----18 \-----16 | | \------------- H012 | | /-----19 \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------------------14 | \------- H009 | | /------- H007 /----18 /----15 | | | \------- H011 | | /-----16 | | | \------------- H012 /-----19 \-----17 | | \-------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------14 | \------- H009 | | /------- H007 | /------15 /-----17 | \------- H011 | +-----16 | | \--------------- H012 /-----18 | | | \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 /----17 | | | /----15 /------ H012 | | | \----14 | \----16 \------ H011 /----18 | | | \------------------ H009 | | /-----19 \------------------------------ H006 | | /----20 \------------------------------------ H008 | | /----21 \------------------------------------------- H014 | | /----22 \------------------------------------------------- H013 | | | \------------------------------------------------------- H001 /----24 | | /------ H003 | \-----------------------------------------------------23 -----25 \------ H005 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H006 (12) 15 1 1 1 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H014 | | /------16 \---------------- H006 | | /-------17 \------------------------ H009 | | | \-------------------------------- H007 /------18 | +----------------------------------------- H012 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H014 (5) 15 2 2 2 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H006 | | /------16 \---------------- H014 | | /-------17 \------------------------ H009 | | | \-------------------------------- H007 /------18 | +----------------------------------------- H012 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H006 (12) 14 0 0 1 H014 (5) 15 2 1 2 H009 (11) 17 1 0 1 H007 (3) 18 1 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------------- H002 | | /------- H008 /-----16 /------14 | | | \------- H006 | \-----15 /-----17 \--------------- H014 | | /------18 \----------------------------- H009 | | | \------------------------------------ H007 /-----19 | +-------------------------------------------- H012 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 --> 2 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----18 | | | \-------------------- H009 | | /----19 \--------------------------------- H006 | | /-----20 \---------------------------------------- H008 | | /-----21 \---------------------------------------------- H014 | | | \----------------------------------------------------- H013 | /----23------------------------------------------------------------ H001 | | | | /------- H003 ------24 \---------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----18 | | | \-------------------- H009 | | /----19 \--------------------------------- H006 | | /-----20 \---------------------------------------- H008 | | /-----21 \---------------------------------------------- H014 | | | \----------------------------------------------------- H001 | /----23------------------------------------------------------------ H013 | | | | /------- H003 ------24 \---------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------- H002 | /-----15 /------- H008 | \------14 /-----16 \------- H006 | | /-----17 \---------------------- H009 | | | \----------------------------- H007 /------18 | +------------------------------------ H012 | | /-----19 \------------------------------------ H011 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 2 2 2 16 17 0 0 1 15 16 1 1 1 14 15 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H014 (5) 15 2 1 2 H008 (4) 16 1 0 1 H006 (12) 17 0 0 0 H012 (10) 18 0 0 0 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------14 | \------- H009 /-----15 | \--------------- H014 /-----16 | \---------------------- H008 /-----17 | \----------------------------- H006 /------18 | \------------------------------------ H012 | /-----19-------------------------------------------- H007 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> H008 9 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H014 | | /------16 \---------------- H009 | | /-------17 \------------------------ H006 | | | \-------------------------------- H012 /------18 | +----------------------------------------- H007 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------14 | \------- H009 | /-----17 /------- H007 | | /------15 | | | \------- H011 /-----18 \-----16 | | \--------------- H012 | | /------19 \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 2 2 2 14 16 0 0 1 H002 (1) 14 0 0 0 H014 (5) 14 2 2 2 H009 (11) 14 1 1 1 15 16 1 0 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 | /-------14--------- H014 | | | \--------- H009 /-------16 | | /--------- H008 | \-------15 /--------17 \--------- H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_14 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 --> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_17 --> H012 11 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 2 2 2 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 0 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------14 | \-------- H009 /------16 | | /-------- H008 | \------15 /------17 \-------- H006 | | | \------------------------ H012 /-------18 | +-------------------------------- H007 | | /------19 \-------------------------------- H011 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H012 11 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------14 | \------- H009 | /-----17 /------- H007 | | /------15 | | | \------- H011 /-----18 \-----16 | | \--------------- H012 | | /------19 \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 2 16 18 2 2 2 15 16 1 0 1 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 H008 (4) 15 1 1 1 H014 (5) 16 0 0 1 17 18 2 1 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 | /-------14--------- H009 | | /-------15 \--------- H006 | | /--------16 \------------------ H008 | | | \--------------------------- H014 /-------18 | | /--------- H007 | | | | \--------------------------17--------- H012 /-------19 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------21 | +------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 10 1 0.500 2 --> 1 node_15 --> node_14 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 3 16 18 2 2 2 15 16 2 0 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 H014 (5) 16 0 0 2 17 18 2 0 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | /--------16 \------------------ H009 | | | \--------------------------- H014 /-------18 | | /--------- H007 | | | | \--------------------------17--------- H012 /-------19 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------21 | +------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 14 17 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 16 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------14 | \--------- H009 | /--------17 /--------- H008 | | /-------15 | | | \--------- H006 | \-------16 /-------19 \------------------ H014 | | | | /--------- H007 | | | /-------20 \--------------------------18--------- H012 | | | | | \--------- H011 | | | \---------------------------------------------- H013 /-------22 | +------------------------------------------------------- H001 | | | | /--------- H003 --------23 \--------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 3 16 18 2 2 2 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 16 1 1 2 17 18 1 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------14 | \---------- H009 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 /---------21 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------22 \----------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 15 17 2 0 2 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 16 17 0 0 2 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 0 0 0 H014 (5) 18 2 0 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | | \------------------ H009 /--------17 | | /--------- H007 | | | | \----------------16--------- H012 /-------18 | | | \--------- H011 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_18 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 0 0 0 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------14 | \-------- H009 | /------15---------------- H008 | | /------16 \---------------- H006 | | | \------------------------ H012 /-------17 | +-------------------------------- H007 | | /------18 \-------------------------------- H011 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H007 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 1 1 1 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 /-------15 | | | \--------- H011 | | | +------------------ H009 /--------16 | | | \------------------ H006 | | /-------17 \--------------------------- H008 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------14 | \-------- H009 | | /-------- H007 | /------15 /------17 | \-------- H011 | +------16 | | \---------------- H012 /-------18 | | | \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------14 | \------- H009 | | /------- H007 /-----18 /------15 | | | \------- H011 | | /-----16 | | | \--------------- H012 /------19 \-----17 | | \---------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 2 16 17 1 0 2 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------14 | \--------- H009 /-------16 | | /--------- H008 | \-------15 /--------17 \--------- H006 | | | \--------------------------- H014 /-------19 | | /--------- H007 | | | | \--------------------------18--------- H012 /-------20 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------22 | +------------------------------------------------------- H001 | | | | /--------- H003 --------23 \--------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 node_16 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H002 (1) 14 0 0 0 H014 (5) 14 2 2 2 H009 (11) 14 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 | /-------14--------- H014 | | | \--------- H009 /-------15 | +------------------ H008 | | /--------16 \------------------ H006 | | | \--------------------------- H012 /-------17 | +------------------------------------- H007 | | /-------18 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_17 --> H007 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 2 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------15-------14--------- H012 | | | | | \--------- H011 | | /--------17 \------------------ H009 | | | | /--------- H008 /-------18 \----------------16 | | \--------- H006 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 2 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------15-------14--------- H012 | | | | | \--------- H011 | | /--------17 \------------------ H009 | | | | /--------- H008 /-------18 \----------------16 | | \--------- H006 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H001 | /-------21------------------------------------------------------- H013 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------14 | \------- H009 | | /------- H007 /-----18 /------15 | | | \------- H011 | | /-----16 | | | \--------------- H012 /------19 \-----17 | | \---------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 2 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 | | /------17 \---------------- H009 | | | | /-------- H008 /-------18 \--------------16 | | \-------- H006 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H001 | | | \------------------------------------------------- H013 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 3 16 17 2 2 2 H002 (1) 16 0 0 0 14 16 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 2 H013 (6) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 | | /-------16 \--------- H011 | | | | /--------- H008 | +-------15 /--------17 | \--------- H006 | | | | | \------------------ H009 /-------18 | | | \--------------------------- H014 | | /-------19 \------------------------------------- H001 | | | \---------------------------------------------- H013 /-------21 | | /--------- H003 | \--------------------------------------------20 --------22 \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 | | | /-----15 /------- H012 /----17 | \----14 | +-----16 \------- H011 | | | | | \-------------------- H009 /-----18 | | | \--------------------------- H006 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------- H007 | /----14 | | \------- H011 /----17 /-----15 | | | \------------- H012 | +-----16 | | \-------------------- H006 /-----18 | | | \--------------------------- H009 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 --> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 1 1 1 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 0 H013 (6) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 /-------15 | | | \--------- H011 | | | +------------------ H009 /--------16 | | | \------------------ H006 | | /-------17 \--------------------------- H008 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H001 | /-------20------------------------------------------------------- H013 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 17 18 1 1 1 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 | | \------14 /-----18-----16 \------- H011 | | | | | \---------------------- H009 | | /------19 | /------- H008 | | \--------------------17 | | \------- H006 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 18 19 1 1 1 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----19 | | | \-------------------- H009 | | | | /------- H008 /----20 \------------------------18 | | \------- H006 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 17 18 1 1 1 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------15 /-------- H012 | | \------14 /-------18------16 \-------- H011 | | | | | \------------------------ H009 | | /------19 | /-------- H008 | | \----------------------17 | | \-------- H006 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------22 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 | | | /-----15 /------- H012 /----17 | \----14 | +-----16 \------- H011 | | | | | \-------------------- H009 /-----18 | | | \--------------------------- H006 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----18 | \--------------- H012 | +-----17 | | | /------- H008 | | \-------------16 /------19 | \------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 0 0 0 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----17 | \--------------- H012 | | | | +-----16---------------------- H008 | | | /------18 | \---------------------- H006 | | | | | \----------------------------- H009 /-----19 | | | \------------------------------------ H014 | | /-----20 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 17 18 1 1 1 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 | | \------14 /-----18-----16 \------- H011 | | | | | \---------------------- H009 | | /------19 | /------- H008 | | \--------------------17 | | \------- H006 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 17 18 1 1 1 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------15 /-------- H012 | | \------14 /-------18------16 \-------- H011 | | | | | \------------------------ H009 | | /------19 | /-------- H008 | | \----------------------17 | | \-------- H006 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 14 16 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 0 H013 (6) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------14---------- H012 | | /--------16 \---------- H011 | | | | /---------- H008 | +---------15 /---------17 | \---------- H006 | | | | | \--------------------- H009 /--------18 | | | \------------------------------- H014 | | | \------------------------------------------ H001 /---------20 | +---------------------------------------------------- H013 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------18 | \---------------- H012 | +------17 | | | /-------- H008 | | \--------------16 /------19 | \-------- H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 0 0 0 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------14 | \------- H009 | | /------- H007 | /------15 /------19 | \------- H011 | | /-----16 | | | \--------------- H012 | | /-----17 /-----20 | | \---------------------- H006 | | \-----18 | | \----------------------------- H008 /-----21 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 /------23 | +---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 0 0 0 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------17 | \---------------- H012 | | | | +------16------------------------ H008 | | | /------18 | \------------------------ H006 | | | | | \-------------------------------- H009 /------19 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------21 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 14 16 2 2 2 H007 (3) 14 1 1 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------14---------- H012 | | /--------16 \---------- H011 | | | | /---------- H008 | +---------15 /---------17 | \---------- H006 | | | | | \--------------------- H009 /--------18 | | | \------------------------------- H014 | | | \------------------------------------------ H013 /---------20 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 18 19 1 1 1 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----17 | | | /-----15 /------- H012 | | | \------14 | \-----16 \------- H011 /------19 | | | \---------------------- H009 | | | | /------- H008 /-----20 \---------------------------18 | | \------- H006 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------14 | \-------- H009 | | /-------- H007 | /------15 /------17 | \-------- H011 | +------16 | | \---------------- H012 /-------18 | | | \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | /------22--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 0 0 0 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------------------------14 | \------- H009 | | /------- H007 | /----15 /-----19 | \------- H011 | | /-----16 | | | \------------- H012 | | /-----17 /----20 | | \-------------------- H006 | | \----18 | | \--------------------------- H008 /-----21 | | | \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 /----17 | | | /----15 /------ H012 | | | \----14 | \----16 \------ H011 /----18 | | | \------------------ H009 | | /-----19 \------------------------------ H006 | | /----20 \------------------------------------ H008 | | /----21 \------------------------------------------- H014 | | /----22 \------------------------------------------------- H001 | | | \------------------------------------------------------- H013 /----24 | | /------ H003 | \-----------------------------------------------------23 -----25 \------ H005 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-----------14 | \------- H009 | /-----17 /------- H007 | | /----15 | | | \------- H011 /----18 \-----16 | | \------------- H012 | | /-----19 \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------------------14 | \------- H009 | | /------- H007 /----18 /----15 | | | \------- H011 | | /-----16 | | | \------------- H012 /-----19 \-----17 | | \-------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 1 0 1 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------14 | \------- H009 | | /------- H007 | /------15 /-----17 | \------- H011 | +-----16 | | \--------------- H012 /-----18 | | | \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 18 19 1 1 1 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----19 | | | \-------------------- H009 | | | | /------- H008 /----20 \------------------------18 | | \------- H006 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 /-----17 | \------14 | +-----16 \------- H011 | | | | | \---------------------- H009 /------18 | | | \----------------------------- H006 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 18 19 1 1 1 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----17 | | | /-----15 /------- H012 | | | \------14 | \-----16 \------- H011 /------19 | | | \---------------------- H009 | | | | /------- H008 /-----20 \---------------------------18 | | \------- H006 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 H007 (3) 15 1 0 1 14 15 0 0 1 H012 (10) 14 1 1 1 H011 (13) 14 0 0 0 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 /-----17 | \------14 | +-----16 \------- H011 | | | | | \---------------------- H009 /------18 | | | \----------------------------- H006 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------22---------------------------------------------------------- H013 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 0 0 0 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------14 | \------- H009 | | /------- H007 | /------15 /------19 | \------- H011 | | /-----16 | | | \--------------- H012 | | /-----17 /-----20 | | \---------------------- H006 | | \-----18 | | \----------------------------- H008 /-----21 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 /------23 | +---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 /-----17 /-----15 | | | \--------------- H012 | +-----16 | | \---------------------- H006 /------18 | | | \----------------------------- H009 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 --> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 /-----17 /-----15 | | | \--------------- H012 | +-----16 | | \---------------------- H006 /------18 | | | \----------------------------- H009 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------22---------------------------------------------------------- H013 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 --> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----18 | \--------------- H012 | +-----17 | | | /------- H008 | | \-------------16 /------19 | \------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (13) 15 0 0 0 H012 (10) 16 0 0 0 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /------------------------14 | \------- H009 | | /------- H007 | /----15 /-----19 | \------- H011 | | /-----16 | | | \------------- H012 | | /-----17 /----20 | | \-------------------- H006 | | \----18 | | \--------------------------- H008 /-----21 | | | \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 2 14 15 0 0 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 1 0 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------18 | \---------------- H012 | +------17 | | | /-------- H008 | | \--------------16 /------19 | \-------- H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------22 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 0 0 0 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----17 | \--------------- H012 | | | | +-----16---------------------- H008 | | | /------18 | \---------------------- H006 | | | | | \----------------------------- H009 /-----19 | | | \------------------------------------ H014 | | /-----20 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 2 14 15 1 1 1 H007 (3) 14 1 1 1 H011 (13) 14 0 0 0 H012 (10) 15 0 0 0 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------17 | \---------------- H012 | | | | +------16------------------------ H008 | | | /------18 | \------------------------ H006 | | | | | \-------------------------------- H009 /------19 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------21 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 ALTree-v1.3.2/test/paup/ancestor_absent/association/test.tree000066400000000000000000000245531412112337500243010ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Wed Apr 23 21:53:16 2008] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_absent/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 69978 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.09 sec) ] tree PAUP_1 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_2 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_3 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_4 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_5 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_6 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_7 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_8 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_9 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_10 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_11 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_13 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_14 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_16 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005)),H010); tree PAUP_17 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_19 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_20 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_21 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_22 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_23 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_24 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_25 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_26 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_27 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_28 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_29 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_30 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_32 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_33 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_34 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_35 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_36 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_37 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_38 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_40 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_41 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_42 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_43 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005)),H010); tree PAUP_44 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_45 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_46 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_47 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_48 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_49 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_50 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_51 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_52 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_53 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_54 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_55 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_56 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_57 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_58 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_59 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_60 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_61 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_63 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_64 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_65 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_66 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005)),H010); tree PAUP_67 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_68 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005)),H010); tree PAUP_69 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_70 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_71 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_72 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_73 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005)),H010); tree PAUP_74 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_75 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_76 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_77 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_78 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_79 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_80 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_81 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_82 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005)),H010); tree PAUP_83 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_84 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_85 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_86 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005)),H010); tree PAUP_87 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005)),H010); tree PAUP_88 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_89 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005)),H010); End; ALTree-v1.3.2/test/paup/ancestor_absent/localisation/000077500000000000000000000000001412112337500225755ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/ancestor_absent/localisation/caco.loc000066400000000000000000000023701412112337500242030ustar00rootroot00000000000000Localisation method using S-character Results: site number 10 sens 2-->1 V_i = 3.47439614486152 site number 9 sens 2-->1 V_i = 1.69733684958301 site number 12 sens 1-->2 V_i = 0.87287156094397 site number 3 sens 2-->1 V_i = -0.267261241912424 site number 4 sens 2-->1 V_i = -0.267261241912424 site number 8 sens 2-->1 V_i = -0.267261241912424 site number 5 sens 2-->1 V_i = -0.267261241912424 site number 3 sens 1-->2 V_i = -0.377964473009227 site number 6 sens 2-->1 V_i = -0.377964473009227 site number 4 sens 1-->2 V_i = -0.377964473009227 site number 8 sens 1-->2 V_i = -0.377964473009227 site number 10 sens 1-->2 V_i = -0.377964473009227 site number 7 sens 2-->1 V_i = -0.377964473009227 site number 5 sens 1-->2 V_i = -0.377964473009227 site number 1 sens 2-->1 V_i = -0.462910049886276 site number 1 sens 1-->2 V_i = -0.462910049886276 site number 11 sens 2-->1 V_i = -0.462910049886276 site number 11 sens 1-->2 V_i = -0.462910049886276 site number 9 sens 1-->2 V_i = -0.462910049886276 site number 2 sens 2-->1 V_i = -0.462910049886276 site number 12 sens 2-->1 V_i = -0.462910049886276 site number 2 sens 1-->2 V_i = -0.462910049886276 site number 7 sens 1-->2 V_i = -0.534522483824849 site number 6 sens 1-->2 V_i = -0.534522483824849 ALTree-v1.3.2/test/paup/ancestor_absent/localisation/caco.paup000066400000000000000000000020741412112337500243740ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=13 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; ancstates *anc vector = 222222222222; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/ancestor_absent/localisation/et_caco.paup000066400000000000000000000021621412112337500250620ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=13 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 2222211222220 H001 112222222222? H003 221122222222? H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; ancstates *anc vector = 222222222222?; end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/ancestor_absent/localisation/nb_cas_control.txt000066400000000000000000000003031412112337500263170ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/ancestor_absent/localisation/run-prog000077500000000000000000000007771412112337500243070ustar00rootroot00000000000000#!/bin/sh -x # To add the character S # p=102 case haplotypes/176 haplotypes ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.58 # To run paup on the file containing the character S paup et_caco.paup # To perform the localisation test # All 89 equiparsimonious trees are analysed ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc ALTree-v1.3.2/test/paup/ancestor_absent/localisation/test.res.log000066400000000000000000016551611412112337500250660ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Fri Jan 13 11:11:19 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "anc" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 19 20 0 0 0 17 19 2 2 2 16 17 3 3 3 15 16 3 3 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H013 (6) 17 0 0 0 H001 (7) 19 2 2 2 18 19 1 1 1 H003 (8) 18 1 1 1 H005 (9) 18 1 1 1 H010 (2) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 +---------14 /--------15 \---------- H014 | | | +--------------------- H009 | | | \--------------------- H006 /---------16 | +------------------------------- H007 | | | +------------------------------- H012 /--------17 | | | \------------------------------- H011 | | | \------------------------------------------ H013 /---------19 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------20 \----------------------------------------18 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_17 --> node_16 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_19 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 3 1 1.000 2 ==> 1 node_18 --> H003 4 1 1.000 2 ==> 1 node_18 --> H005 12 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 4 16 17 2 1 2 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 3 H001 (7) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | +------14-------- H012 /------15 | | | \-------- H011 | | | +---------------- H009 /------16 | | | \---------------- H006 | | /-------17 \------------------------ H008 | | /------18 \-------------------------------- H014 | | /------19 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------21 | | /-------- H003 | \-----------------------------------------------20 -------22 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H014 (5) 14 1 1 2 H006 (12) 15 1 0 1 H009 (11) 16 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------------- H002 | | /--------- H008 | /-------14 /--------16 | \--------- H014 | +-------15 | | \------------------ H006 | | | \--------------------------- H009 /-------17 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------18 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 /-------20 | +------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 --> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 16 1 0 1 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------14 | \--------- H009 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 16 1 0 1 H012 (10) 18 1 0 1 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /--------------14 | \-------- H009 | /------17 /-------- H008 | | /------15 | | | \-------- H014 /-------18 \------16 | | \---------------- H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 3 16 18 3 3 3 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 15 16 0 0 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 17 18 1 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------14---------- H009 | | | \---------- H006 /--------16 | | /---------- H008 | \---------15 | \---------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 /---------21 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------22 \----------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 2 2 2 15 17 3 3 3 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 16 17 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------14---------- H009 | | | \---------- H006 /--------15 | +--------------------- H008 | | | \--------------------- H014 /---------17 | | /---------- H007 | | | | \-------------------16---------- H012 /--------18 | | | \---------- H011 | | | \------------------------------------------ H013 /---------20 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_17 --> node_16 9 1 0.500 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 3 16 17 2 0 3 15 16 1 1 1 14 15 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 15 1 0 1 H008 (4) 16 1 0 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------14 | \-------- H009 /------15 | \---------------- H006 /------16 | \------------------------ H008 /-------17 | \-------------------------------- H014 | /------19 /-------- H007 | | | | \-------------------------------18-------- H012 /------20 | | | \-------- H011 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 --> 1 node_16 --> H008 11 1 0.333 2 --> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H014 (5) 14 1 1 2 H006 (12) 15 1 0 1 H009 (11) 17 1 0 1 H007 (3) 18 1 0 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------------- H002 | | /------- H008 /-----16 /------14 | | | \------- H014 | \-----15 /-----17 \--------------- H006 | | /------18 \----------------------------- H009 | | | \------------------------------------ H007 /-----19 | +-------------------------------------------- H012 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 --> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H006 (12) 14 0 0 1 H014 (5) 15 2 1 2 H009 (11) 16 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------------- H002 | | /--------- H008 | /-------14 /--------16 | \--------- H006 | +-------15 | | \------------------ H014 | | | \--------------------------- H009 /-------17 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------18 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 /-------20 | +------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 --> 2 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (12) 17 1 0 1 H012 (10) 18 1 0 1 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------14 | \-------- H009 /------16 | | /-------- H008 | \------15 /------17 \-------- H014 | | /-------18 \------------------------ H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 19 20 0 0 0 17 19 2 2 2 16 17 3 3 3 15 16 3 3 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H014 (5) 15 2 2 2 H009 (11) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H013 (6) 17 0 0 0 H001 (7) 19 2 2 2 18 19 1 1 1 H003 (8) 18 1 1 1 H005 (9) 18 1 1 1 H010 (2) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 +---------14 /--------15 \---------- H006 | | | +--------------------- H014 | | | \--------------------- H009 /---------16 | +------------------------------- H007 | | | +------------------------------- H012 /--------17 | | | \------------------------------- H011 | | | \------------------------------------------ H013 /---------19 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------20 \----------------------------------------18 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_17 --> node_16 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_19 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 3 1 1.000 2 ==> 1 node_18 --> H003 4 1 1.000 2 ==> 1 node_18 --> H005 12 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 3 17 18 3 1 4 16 17 2 1 2 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 2 H013 (6) 19 2 0 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | +------14-------- H012 /------15 | | | \-------- H011 | | | +---------------- H009 /------16 | | | \---------------- H006 | | /-------17 \------------------------ H008 | | /------18 \-------------------------------- H014 | | /------19 \----------------------------------------- H001 | | | \------------------------------------------------- H013 /------21 | | /-------- H003 | \-----------------------------------------------20 -------22 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 2 1 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------- H002 | | /------- H007 | | /-----15------14------- H012 | | | | | \------- H011 /-----16 | | | \--------------- H009 | | /-----17 \---------------------- H006 | | /------18 \----------------------------- H008 | | /-----19 \------------------------------------ H014 | | /-----20 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 2 17 18 3 1 4 16 17 2 2 3 H002 (1) 16 0 0 0 14 16 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 15 16 2 1 2 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 2 1 2 H014 (5) 17 0 0 0 H013 (6) 18 0 0 3 H001 (7) 19 2 0 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 | | /-------16 \--------- H011 | | | | /--------- H008 | +-------15 /--------17 | \--------- H006 | | | | | \------------------ H009 /-------18 | | | \--------------------------- H014 | | /-------19 \------------------------------------- H013 | | | \---------------------------------------------- H001 /-------21 | | /--------- H003 | \--------------------------------------------20 --------22 \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 1 1 3 17 18 2 2 2 15 17 3 1 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 16 17 0 0 2 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H014 (5) 18 2 0 2 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H006 | | | \---------------- H009 /------17 | | /-------- H007 | | | | \--------------16-------- H012 /-------18 | | | \-------- H011 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 1 1 1 16 17 2 2 2 15 16 3 3 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H014 (5) 17 2 2 2 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | | \------------------ H009 | /--------16--------------------------- H007 | | | +--------------------------- H012 /-------17 | | | \--------------------------- H011 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 /------16 | | | \---------------- H009 | | /-------17 \------------------------ H006 | | /------18 \-------------------------------- H008 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | /------21--------------------------------------------------------- H013 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 1 1 3 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 15 2 1 2 16 17 2 1 2 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 | | /------17 \---------------- H009 | | | | /-------- H008 /-------18 \--------------16 | | \-------- H006 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 2 1 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------- H002 | | /------- H007 | | /-----15------14------- H012 | | | | | \------- H011 /-----16 | | | \--------------- H009 | | /-----17 \---------------------- H006 | | /------18 \----------------------------- H008 | | /-----19 \------------------------------------ H014 | | /-----20 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 14 15 0 0 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 2 0 2 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------- H007 | /----14 | | \------- H011 /----17 /-----15 | | | \------------- H012 | +-----16 | | \-------------------- H006 /-----18 | | | \--------------------------- H009 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 2 1 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 /------16 | | | \---------------- H009 | | /-------17 \------------------------ H006 | | /------18 \-------------------------------- H008 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-----------14 | \------- H009 | /-----17 /------- H007 | | /----15 | | | \------- H011 /----18 \-----16 | | \------------- H012 | | /-----19 \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /------------------14 | \------- H009 | | /------- H007 /----18 /----15 | | | \------- H011 | | /-----16 | | | \------------- H012 /-----19 \-----17 | | \-------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------14 | \------- H009 | | /------- H007 | /------15 /-----17 | \------- H011 | +-----16 | | \--------------- H012 /-----18 | | | \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 /----17 | | | /----15 /------ H012 | | | \----14 | \----16 \------ H011 /----18 | | | \------------------ H009 | | /-----19 \------------------------------ H006 | | /----20 \------------------------------------ H008 | | /----21 \------------------------------------------- H014 | | /----22 \------------------------------------------------- H013 | | | \------------------------------------------------------- H001 /----24 | | /------ H003 | \-----------------------------------------------------23 -----25 \------ H005 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H006 (12) 15 1 1 1 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H014 | | /------16 \---------------- H006 | | /-------17 \------------------------ H009 | | | \-------------------------------- H007 /------18 | +----------------------------------------- H012 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H014 (5) 15 2 2 2 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H006 | | /------16 \---------------- H014 | | /-------17 \------------------------ H009 | | | \-------------------------------- H007 /------18 | +----------------------------------------- H012 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 0 0 1 14 15 1 1 1 H008 (4) 14 1 0 1 H006 (12) 14 0 0 1 H014 (5) 15 2 1 2 H009 (11) 17 1 0 1 H007 (3) 18 1 0 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------------- H002 | | /------- H008 /-----16 /------14 | | | \------- H006 | \-----15 /-----17 \--------------- H014 | | /------18 \----------------------------- H009 | | | \------------------------------------ H007 /-----19 | +-------------------------------------------- H012 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 --> 2 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----18 | | | \-------------------- H009 | | /----19 \--------------------------------- H006 | | /-----20 \---------------------------------------- H008 | | /-----21 \---------------------------------------------- H014 | | | \----------------------------------------------------- H013 | /----23------------------------------------------------------------ H001 | | | | /------- H003 ------24 \---------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----18 | | | \-------------------- H009 | | /----19 \--------------------------------- H006 | | /-----20 \---------------------------------------- H008 | | /-----21 \---------------------------------------------- H014 | | | \----------------------------------------------------- H001 | /----23------------------------------------------------------------ H013 | | | | /------- H003 ------24 \---------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 3 3 3 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 16 1 0 1 H007 (3) 17 1 0 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------- H002 | /-----15 /------- H008 | \------14 /-----16 \------- H006 | | /-----17 \---------------------- H009 | | | \----------------------------- H007 /------18 | +------------------------------------ H012 | | /-----19 \------------------------------------ H011 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 1 17 18 3 3 3 16 17 0 0 1 15 16 1 1 1 14 15 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H014 (5) 15 2 1 2 H008 (4) 16 1 0 1 H006 (12) 17 0 0 0 H012 (10) 18 0 0 0 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------- H002 /------14 | \------- H009 /-----15 | \--------------- H014 /-----16 | \---------------------- H008 /-----17 | \----------------------------- H006 /------18 | \------------------------------------ H012 | /-----19-------------------------------------------- H007 | | /-----20 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> H008 9 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 0 0 1 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H014 (5) 14 1 1 1 H009 (11) 15 1 1 1 H006 (12) 16 1 0 1 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | | /-------- H008 /------15------14 | | \-------- H014 | | /------16 \---------------- H009 | | /-------17 \------------------------ H006 | | | \-------------------------------- H012 /------18 | +----------------------------------------- H007 | | /------19 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 9 1 0.500 1 ==> 2 node_14 --> H008 11 1 0.333 2 ==> 1 node_14 --> H014 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------14 | \------- H009 | /-----17 /------- H007 | | /------15 | | | \------- H011 /-----18 \-----16 | | \--------------- H012 | | /------19 \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 14 16 0 0 1 H002 (1) 14 0 0 0 H014 (5) 14 2 2 2 H009 (11) 14 1 1 1 15 16 1 0 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 | /-------14--------- H014 | | | \--------- H009 /-------16 | | /--------- H008 | \-------15 /--------17 \--------- H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 --> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_17 --> H012 11 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 3 3 3 14 16 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 0 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 17 1 0 1 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------14 | \-------- H009 /------16 | | /-------- H008 | \------15 /------17 \-------- H006 | | | \------------------------ H012 /-------18 | +-------------------------------- H007 | | /------19 \-------------------------------- H011 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H012 11 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------14 | \------- H009 | /-----17 /------- H007 | | /------15 | | | \------- H011 /-----18 \-----16 | | \--------------- H012 | | /------19 \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 2 16 18 2 2 3 15 16 2 0 2 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H006 (12) 14 1 1 1 H008 (4) 15 1 1 1 H014 (5) 16 0 0 1 17 18 2 1 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 | /-------14--------- H009 | | /-------15 \--------- H006 | | /--------16 \------------------ H008 | | | \--------------------------- H014 /-------18 | | /--------- H007 | | | | \--------------------------17--------- H012 /-------19 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------21 | +------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_15 --> node_14 9 1 0.500 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_14 --> H006 11 1 0.333 2 ==> 1 node_15 --> H008 11 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 3 16 18 2 2 3 15 16 3 0 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 H014 (5) 16 0 0 2 17 18 2 0 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | /--------16 \------------------ H009 | | | \--------------------------- H014 /-------18 | | /--------- H007 | | | | \--------------------------17--------- H012 /-------19 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------21 | +------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.333 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 14 17 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 16 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /----------------14 | \--------- H009 | /--------17 /--------- H008 | | /-------15 | | | \--------- H006 | \-------16 /-------19 \------------------ H014 | | | | /--------- H007 | | | /-------20 \--------------------------18--------- H012 | | | | | \--------- H011 | | | \---------------------------------------------- H013 /-------22 | +------------------------------------------------------- H001 | | | | /--------- H003 --------23 \--------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 3 16 18 3 3 3 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 16 1 1 2 17 18 1 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------14 | \---------- H009 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 /---------21 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------22 \----------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.333 2 --> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 15 17 3 1 3 H002 (1) 15 0 0 0 14 15 1 1 1 H008 (4) 14 1 1 1 H006 (12) 14 0 0 0 H009 (11) 15 1 1 1 16 17 0 0 2 H007 (3) 16 1 1 1 H012 (10) 16 1 1 1 H011 (13) 16 1 1 1 H014 (5) 18 2 0 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------15-------14 | | \--------- H006 | | | \------------------ H009 /--------17 | | /--------- H007 | | | | \----------------16--------- H012 /-------18 | | | \--------- H011 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 2 ==> 1 node_14 --> H008 9 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 ==> 1 node_16 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 1 1 1 15 16 3 3 3 14 15 1 1 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------14 | \-------- H009 | /------15---------------- H008 | | /------16 \---------------- H006 | | | \------------------------ H012 /-------17 | +-------------------------------- H007 | | /------18 \-------------------------------- H011 | | /------19 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------21--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 4 16 17 2 1 2 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H013 (6) 18 0 0 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 /-------15 | | | \--------- H011 | | | +------------------ H009 /--------16 | | | \------------------ H006 | | /-------17 \--------------------------- H008 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------14 | \-------- H009 | | /-------- H007 | /------15 /------17 | \-------- H011 | +------16 | | \---------------- H012 /-------18 | | | \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | /------22--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------14 | \------- H009 | | /------- H007 /-----18 /------15 | | | \------- H011 | | /-----16 | | | \--------------- H012 /------19 \-----17 | | \---------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 3 16 17 2 0 3 14 16 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 15 16 1 1 1 H008 (4) 15 0 0 1 H006 (12) 15 1 0 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------14 | \--------- H009 /-------16 | | /--------- H008 | \-------15 /--------17 \--------- H006 | | | \--------------------------- H014 /-------19 | | /--------- H007 | | | | \--------------------------18--------- H012 /-------20 | | | \--------- H011 | | | \---------------------------------------------- H013 /-------22 | +------------------------------------------------------- H001 | | | | /--------- H003 --------23 \--------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_14 9 1 0.333 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H006 9 1 0.333 2 --> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 1 1 1 15 16 3 3 3 14 15 1 1 1 H002 (1) 14 0 0 0 H014 (5) 14 2 2 2 H009 (11) 14 1 1 1 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H012 (10) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 | /-------14--------- H014 | | | \--------- H009 /-------15 | +------------------ H008 | | /--------16 \------------------ H006 | | | \--------------------------- H012 /-------17 | +------------------------------------- H007 | | /-------18 \------------------------------------- H011 | | | \---------------------------------------------- H013 | /-------20------------------------------------------------------- H001 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_14 --> H009 12 1 0.333 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 1 1 3 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 15 2 1 2 16 17 2 1 2 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------15-------14--------- H012 | | | | | \--------- H011 | | /--------17 \------------------ H009 | | | | /--------- H008 /-------18 \----------------16 | | \--------- H006 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | /-------21------------------------------------------------------- H001 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 1 1 3 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 15 2 1 2 16 17 2 1 2 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------15-------14--------- H012 | | | | | \--------- H011 | | /--------17 \------------------ H009 | | | | /--------- H008 /-------18 \----------------16 | | \--------- H006 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H001 | /-------21------------------------------------------------------- H013 | | | | /--------- H003 --------22 \--------------------------------------------20 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------14 | \------- H009 | | /------- H007 /-----18 /------15 | | | \------- H011 | | /-----16 | | | \--------------- H012 /------19 \-----17 | | \---------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 1 1 3 15 17 1 0 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 15 2 1 2 16 17 2 1 2 H008 (4) 16 0 0 1 H006 (12) 16 1 0 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------15------14-------- H012 | | | | | \-------- H011 | | /------17 \---------------- H009 | | | | /-------- H008 /-------18 \--------------16 | | \-------- H006 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H001 | | | \------------------------------------------------- H013 /------22 | | /-------- H003 | \-----------------------------------------------21 -------23 \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H006 9 1 0.500 2 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 0 0 2 18 19 2 2 3 17 18 3 1 4 16 17 2 2 3 H002 (1) 16 0 0 0 14 16 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 15 16 2 1 2 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 2 1 2 H014 (5) 17 0 0 0 H001 (7) 18 0 0 2 H013 (6) 19 2 0 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 | | /-------16 \--------- H011 | | | | /--------- H008 | +-------15 /--------17 | \--------- H006 | | | | | \------------------ H009 /-------18 | | | \--------------------------- H014 | | /-------19 \------------------------------------- H001 | | | \---------------------------------------------- H013 /-------21 | | /--------- H003 | \--------------------------------------------20 --------22 \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 | | | /-----15 /------- H012 /----17 | \----14 | +-----16 \------- H011 | | | | | \-------------------- H009 /-----18 | | | \--------------------------- H006 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 14 15 0 0 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 2 0 2 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------- H007 | /----14 | | \------- H011 /----17 /-----15 | | | \------------- H012 | +-----16 | | \-------------------- H006 /-----18 | | | \--------------------------- H009 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 3 17 18 3 3 4 16 17 2 1 2 15 16 1 1 1 H002 (1) 15 0 0 0 14 15 2 2 3 H007 (3) 14 2 1 2 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 15 1 1 1 H006 (12) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 0 H001 (7) 18 0 0 0 H013 (6) 20 2 2 3 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------14--------- H012 /-------15 | | | \--------- H011 | | | +------------------ H009 /--------16 | | | \------------------ H006 | | /-------17 \--------------------------- H008 | | /-------18 \------------------------------------- H014 | | | \---------------------------------------------- H001 | /-------20------------------------------------------------------- H013 | | | | /--------- H003 --------21 \--------------------------------------------19 | \--------- H005 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> node_15 9 1 1.000 2 ==> 1 node_15 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 2 3 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 17 18 2 1 2 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 | | \------14 /-----18-----16 \------- H011 | | | | | \---------------------- H009 | | /------19 | /------- H008 | | \--------------------17 | | \------- H006 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 1 1 3 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 18 19 2 1 2 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----19 | | | \-------------------- H009 | | | | /------- H008 /----20 \------------------------18 | | \------- H006 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 2 3 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 17 18 2 1 2 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------15 /-------- H012 | | \------14 /-------18------16 \-------- H011 | | | | | \------------------------ H009 | | /------19 | /-------- H008 | | \----------------------17 | | \-------- H006 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------22 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 | | | /-----15 /------- H012 /----17 | \----14 | +-----16 \------- H011 | | | | | \-------------------- H009 /-----18 | | | \--------------------------- H006 | | /----19 \--------------------------------- H008 | | /-----20 \---------------------------------------- H014 | | /-----21 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----23 | | /------- H003 | \---------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 2 3 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 3 14 15 0 0 1 H007 (3) 14 1 1 2 H011 (13) 14 1 0 1 H012 (10) 15 1 0 2 16 17 2 0 2 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 2 1 2 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----18 | \--------------- H012 | +-----17 | | | /------- H008 | | \-------------16 /------19 | \------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 3 2 3 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 3 14 15 1 1 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----17 | \--------------- H012 | | | | +-----16---------------------- H008 | | | /------18 | \---------------------- H006 | | | | | \----------------------------- H009 /-----19 | | | \------------------------------------ H014 | | /-----20 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 13 1 0.333 1 --> 0 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 2 3 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 17 18 2 1 2 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 | | \------14 /-----18-----16 \------- H011 | | | | | \---------------------- H009 | | /------19 | /------- H008 | | \--------------------17 | | \------- H006 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 2 3 H002 (1) 18 0 0 0 16 18 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 17 18 2 1 2 H008 (4) 17 1 1 1 H006 (12) 17 0 0 0 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------15 /-------- H012 | | \------14 /-------18------16 \-------- H011 | | | | | \------------------------ H009 | | /------19 | /-------- H008 | | \----------------------17 | | \-------- H006 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 3 17 18 3 3 4 16 17 2 2 3 H002 (1) 16 0 0 0 14 16 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 15 16 2 1 2 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 2 1 2 H014 (5) 17 0 0 0 H001 (7) 18 0 0 0 H013 (6) 20 2 2 3 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------14---------- H012 | | /--------16 \---------- H011 | | | | /---------- H008 | +---------15 /---------17 | \---------- H006 | | | | | \--------------------- H009 /--------18 | | | \------------------------------- H014 | | | \------------------------------------------ H001 /---------20 | +---------------------------------------------------- H013 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 2 3 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 3 14 15 0 0 1 H007 (3) 14 1 1 2 H011 (13) 14 1 0 1 H012 (10) 15 1 0 2 16 17 2 0 2 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 2 1 2 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------18 | \---------------- H012 | +------17 | | | /-------- H008 | | \--------------16 /------19 | \-------- H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------22 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 1 0 1 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------14 | \------- H009 | | /------- H007 | /------15 /------19 | \------- H011 | | /-----16 | | | \--------------- H012 | | /-----17 /-----20 | | \---------------------- H006 | | \-----18 | | \----------------------------- H008 /-----21 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 /------23 | +---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 3 2 3 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 3 14 15 1 1 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------17 | \---------------- H012 | | | | +------16------------------------ H008 | | | /------18 | \------------------------ H006 | | | | | \-------------------------------- H009 /------19 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 /------21 | +--------------------------------------------------------- H001 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 13 1 0.333 1 --> 0 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 4 16 17 2 2 3 H002 (1) 16 0 0 0 14 16 2 2 3 H007 (3) 14 1 1 2 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 15 16 2 1 2 H008 (4) 15 1 1 1 H006 (12) 15 0 0 0 H009 (11) 16 2 1 2 H014 (5) 17 0 0 0 H013 (6) 18 0 0 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (9) 19 1 1 1 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------14---------- H012 | | /--------16 \---------- H011 | | | | /---------- H008 | +---------15 /---------17 | \---------- H006 | | | | | \--------------------- H009 /--------18 | | | \------------------------------- H014 | | | \------------------------------------------ H013 /---------20 | +---------------------------------------------------- H001 | | | | /---------- H003 ---------21 \----------------------------------------19 | \---------- H005 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_16 --> node_14 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 1 1 3 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 18 19 2 1 2 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----17 | | | /-----15 /------- H012 | | | \------14 | \-----16 \------- H011 /------19 | | | \---------------------- H009 | | | | /------- H008 /-----20 \---------------------------18 | | \------- H006 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------23---------------------------------------------------------- H001 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------14 | \-------- H009 | | /-------- H007 | /------15 /------17 | \-------- H011 | +------16 | | \---------------- H012 /-------18 | | | \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | /------22--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 1 0 1 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /------------------------14 | \------- H009 | | /------- H007 | /----15 /-----19 | \------- H011 | | /-----16 | | | \------------- H012 | | /-----17 /----20 | | \-------------------- H006 | | \----18 | | \--------------------------- H008 /-----21 | | | \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 /----17 | | | /----15 /------ H012 | | | \----14 | \----16 \------ H011 /----18 | | | \------------------ H009 | | /-----19 \------------------------------ H006 | | /----20 \------------------------------------ H008 | | /----21 \------------------------------------------- H014 | | /----22 \------------------------------------------------- H001 | | | \------------------------------------------------------- H013 /----24 | | /------ H003 | \-----------------------------------------------------23 -----25 \------ H005 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 17 18 0 0 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-----------14 | \------- H009 | /-----17 /------- H007 | | /----15 | | | \------- H011 /----18 \-----16 | | \------------- H012 | | /-----19 \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 14 18 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /------------------14 | \------- H009 | | /------- H007 /----18 /----15 | | | \------- H011 | | /-----16 | | | \------------- H012 /-----19 \-----17 | | \-------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 14 17 0 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 2 0 2 H006 (12) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------14 | \------- H009 | | /------- H007 | /------15 /-----17 | \------- H011 | +-----16 | | \--------------- H012 /-----18 | | | \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 1 1 3 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 18 19 2 1 2 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----17 | | | /-----15 /------- H012 | | | \----14 | \-----16 \------- H011 /-----19 | | | \-------------------- H009 | | | | /------- H008 /----20 \------------------------18 | | \------- H006 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 /-----17 | \------14 | +-----16 \------- H011 | | | | | \---------------------- H009 /------18 | | | \----------------------------- H006 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 1 1 3 17 19 1 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 1 0 2 14 15 0 0 1 H012 (10) 14 1 1 2 H011 (13) 14 1 0 1 H009 (11) 16 2 0 2 18 19 2 1 2 H008 (4) 18 0 0 1 H006 (12) 18 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----17 | | | /-----15 /------- H012 | | | \------14 | \-----16 \------- H011 /------19 | | | \---------------------- H009 | | | | /------- H008 /-----20 \---------------------------18 | | \------- H006 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------23---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_17 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 node_14 --> H012 11 1 0.500 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 H007 (3) 15 2 0 2 14 15 0 0 1 H012 (10) 14 2 1 2 H011 (13) 14 0 0 1 H009 (11) 16 1 0 1 H006 (12) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----15 /------- H012 /-----17 | \------14 | +-----16 \------- H011 | | | | | \---------------------- H009 /------18 | | | \----------------------------- H006 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------22---------------------------------------------------------- H013 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_14 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 1 0 1 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------14 | \------- H009 | | /------- H007 | /------15 /------19 | \------- H011 | | /-----16 | | | \--------------- H012 | | /-----17 /-----20 | | \---------------------- H006 | | \-----18 | | \----------------------------- H008 /-----21 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 /------23 | +---------------------------------------------------------- H013 | | | | /------- H003 ------24 \-------------------------------------------------22 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 14 15 0 0 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 2 0 2 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 /-----17 /-----15 | | | \--------------- H012 | +-----16 | | \---------------------- H006 /------18 | | | \----------------------------- H009 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | /------22---------------------------------------------------------- H001 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 2 17 18 1 1 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 2 2 3 14 15 0 0 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 2 0 2 H006 (12) 16 1 0 1 H009 (11) 17 1 1 1 H008 (4) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 /-----17 /-----15 | | | \--------------- H012 | +-----16 | | \---------------------- H006 /------18 | | | \----------------------------- H009 | | /-----19 \------------------------------------ H008 | | /-----20 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | /------22---------------------------------------------------------- H013 | | | | /------- H003 ------23 \-------------------------------------------------21 | \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 2 3 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 3 14 15 0 0 1 H007 (3) 14 1 1 2 H011 (13) 14 1 0 1 H012 (10) 15 1 0 2 16 17 2 0 2 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 2 1 2 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (9) 22 1 1 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----18 | \--------------- H012 | +-----17 | | | /------- H008 | | \-------------16 /------19 | \------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------23 | | /------- H003 | \-------------------------------------------------22 ------24 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 14 19 1 0 1 H002 (1) 14 0 0 0 H009 (11) 14 1 1 1 18 19 1 1 1 17 18 1 0 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (13) 15 0 0 1 H012 (10) 16 1 0 1 H006 (12) 17 0 0 0 H008 (4) 18 0 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (9) 23 1 1 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /------------------------14 | \------- H009 | | /------- H007 | /----15 /-----19 | \------- H011 | | /-----16 | | | \------------- H012 | | /-----17 /----20 | | \-------------------- H006 | | \----18 | | \--------------------------- H008 /-----21 | | | \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 /----24 | | /------- H003 | \---------------------------------------------------23 ------25 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_14 9 1 0.500 2 --> 1 node_14 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> node_17 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 2 3 H002 (1) 18 0 0 0 17 18 0 0 1 15 17 2 2 3 14 15 0 0 1 H007 (3) 14 1 1 2 H011 (13) 14 1 0 1 H012 (10) 15 1 0 2 16 17 2 0 2 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 18 2 1 2 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------18 | \---------------- H012 | +------17 | | | /-------- H008 | | \--------------16 /------19 | \-------- H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------22 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------23 \-----------------------------------------------21 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 node_14 --> H011 13 1 0.333 0 --> 1 node_15 --> H012 11 1 0.500 2 --> 1 node_17 --> node_16 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 3 2 3 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 3 14 15 1 1 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (9) 21 1 1 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------14 | | \------- H011 | /-----15 /-----17 | \--------------- H012 | | | | +-----16---------------------- H008 | | | /------18 | \---------------------- H006 | | | | | \----------------------------- H009 /-----19 | | | \------------------------------------ H014 | | /-----20 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 /------22 | | /------- H003 | \-------------------------------------------------21 ------23 \------- H005 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 13 1 0.333 1 --> 0 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 3 2 3 H002 (1) 17 0 0 0 16 17 1 1 1 15 16 2 2 3 14 15 1 1 1 H007 (3) 14 2 1 2 H011 (13) 14 0 0 1 H012 (10) 15 1 0 1 H008 (4) 16 1 1 1 H006 (12) 16 0 0 0 H009 (11) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (9) 20 1 1 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------14 | | \-------- H011 | /------15 /-------17 | \---------------- H012 | | | | +------16------------------------ H008 | | | /------18 | \------------------------ H006 | | | | | \-------------------------------- H009 /------19 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 /------21 | +--------------------------------------------------------- H013 | | | | /-------- H003 -------22 \-----------------------------------------------20 | \-------- H005 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> node_14 11 1 0.500 1 ==> 2 node_14 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 13 1 0.333 1 --> 0 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 ALTree-v1.3.2/test/paup/ancestor_absent/localisation/test.tree000066400000000000000000000246531412112337500244470ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Fri Jan 13 11:11:19 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_absent/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 69978 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.09 sec) ] tree PAUP_1 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_2 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_3 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_4 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_5 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_6 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_7 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_8 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_9 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_10 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_11 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_13 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_14 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_16 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005)),H010); tree PAUP_17 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_19 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_20 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_21 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_22 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_23 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_24 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_25 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_26 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_27 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_28 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_29 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010); tree PAUP_30 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_32 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_33 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_34 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_35 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_36 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_37 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_38 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_40 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_41 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_42 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_43 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005)),H010); tree PAUP_44 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005)),H010); tree PAUP_45 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_46 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_47 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_48 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010); tree PAUP_49 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005)),H010); tree PAUP_50 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_51 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_52 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_53 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_54 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_55 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_56 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_57 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_58 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_59 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005)),H010); tree PAUP_60 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_61 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005)),H010); tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_63 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005)),H010); tree PAUP_64 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_65 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_66 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005)),H010); tree PAUP_67 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_68 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005)),H010); tree PAUP_69 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_70 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005)),H010); tree PAUP_71 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005)),H010); tree PAUP_72 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_73 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005)),H010); tree PAUP_74 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_75 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_76 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_77 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005)),H010); tree PAUP_78 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005)),H010); tree PAUP_79 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_80 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005)),H010); tree PAUP_81 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_82 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005)),H010); tree PAUP_83 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005)),H010); tree PAUP_84 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005)),H010); tree PAUP_85 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_86 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005)),H010); tree PAUP_87 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005)),H010); tree PAUP_88 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005)),H010); tree PAUP_89 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005)),H010); End; ALTree-v1.3.2/test/paup/ancestor_present/000077500000000000000000000000001412112337500203205ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/ancestor_present/association/000077500000000000000000000000001412112337500226345ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/ancestor_present/association/1_caco.asso000066400000000000000000000066251412112337500246610ustar00rootroot00000000000000 /----* H002 (LEVEL: 4) case/control:8/6 | /----* H007 (LEVEL: 5) case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 (LEVEL: 5) case/control:1/4 | | Site: 11 Sens: 2-->1 |----* 15 (LEVEL: 4) case/control:13/18 | | Site: 1 Sens: 1-->2 | | Site: 2 Sens: 1-->2 | \----* H011 (LEVEL: 5) case/control:5/1 /----* 17 (LEVEL: 3) case/control:66/41 | | Site: 10 Sens: 2-->1 | | Site: 9 Sens: 2-->1 | | /----* H008 (LEVEL: 5) case/control:9/2 | | | Site: 9 Sens: 1-->2 | |----* 16 (LEVEL: 4) case/control:37/15 | | | Site: 11 Sens: 2-->1 | | \----* H006 (LEVEL: 5) case/control:28/13 | \----* H009 (LEVEL: 4) case/control:8/2 | Site: 12 Sens: 2-->1 /----* 18 (LEVEL: 2) case/control:70/43 | | Site: 8 Sens: 2-->1 | | Site: 1 Sens: 2-->1 | | Site: 2 Sens: 2-->1 | \----* H014 (LEVEL: 3) case/control:4/2 /----* 19 (LEVEL: 1) case/control:72/47 | | Site: 6 Sens: 2-->1 | | Site: 7 Sens: 2-->1 | \----* H013 (LEVEL: 2) case/control:2/4 |----* H001 (LEVEL: 1) case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 | /----* H003 (LEVEL: 2) case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 20 (LEVEL: 1) case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 (LEVEL: 2) case/control:7/7 | Site: 12 Sens: 2-->1 -----* 22+(21) (LEVEL: 0) case/control:200/200 | | [0] ddl=4 chi2=9.33 p_value_chi2=0.0535 | [1] ddl=6 chi2=11.24 p_value_chi2=0.07 | [2] ddl=7 chi2=11.30 p_value_chi2=0.112 | [3] ddl=10 chi2=19.46 p_value_chi2=0.029 | [4] ddl=13 chi2=25.55 p_value_chi2=0.015 |----* H000 (LEVEL: 1) case/control:98/126 \----* H010 (LEVEL: 1) case/control:7/5 Site: 5 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 /----* H003 (LEVEL: 2) case/control:12/15 /----* 6 (LEVEL: 1) case/control:54/40 | | Site: 2 Sens: 2-->1 | \----* H005 (LEVEL: 2) case/control:42/25 | Site: 5 Sens: 1-->2 |----* H001 (LEVEL: 1) case/control:9/18 -----* 9+(7) (LEVEL: 0) case/control:71/79 | | [0] ddl=2 chi2=10.52 p_value_chi2=0.00521 | [1] ddl=4 chi2=13.26 p_value_chi2=0.009 | /----* H004 (LEVEL: 2) case/control:5/15 | | Site: 6 Sens: 2-->1 | | Site: 4 Sens: 1-->2 | | Site: 5 Sens: 1-->2 \----* 8 (LEVEL: 1) case/control:8/21 | Site: 1 Sens: 1-->2 \----* H002 (LEVEL: 2) case/control:3/6 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 La pmin minimale est 0 ############################################ p_value for the 2 files = 0 ALTree-v1.3.2/test/paup/ancestor_present/association/caco.paup000066400000000000000000000021161412112337500244300ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; ancstates *anc vector = 222222222222; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/ancestor_present/association/nb_cas_control.txt000066400000000000000000000004021412112337500263560ustar00rootroot00000000000000H002 m008 c006 # ceci est un commentaire ; cici aussi H010 cases_007 c005 H007 m_007 c013 H008 case009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H000 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/ancestor_present/association/run_altree000077500000000000000000000007631412112337500247300ustar00rootroot00000000000000#!/bin/sh -x #To run paup: paup caco.paup # To perform the association test (on the forst tree found in the file #test.res.log ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso # To perform the association test without the permutation test (using # a theshold for the chi2) #../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ #-p paup --tree-to-analyse 1 --chi2-threshold 0.05 -r 0 \ #-o 1_caco.asso ALTree-v1.3.2/test/paup/ancestor_present/association/test.res.log000066400000000000000000000057471412112337500251230ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Wed May 31 14:29:51 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 7 Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 7 total characters: All characters are of type 'unord' All characters have equal weight 1 character is constant 5 variable characters are parsimony-uninformative Number of parsimony-informative characters = 1 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H003 (1) 6 1 1 1 5 6 1 1 2 H004 (2) 5 3 3 3 H002 (3) 5 1 0 1 H001 (4) 6 0 0 1 ------------------------------------------------------------------------- Sum 6 Tree length = 6 Consistency index (CI) = 1.0000 Homoplasy index (HI) = 0.0000 CI excluding uninformative characters = 1.0000 HI excluding uninformative characters = 0.0000 Retention index (RI) = 1.0000 Rescaled consistency index (RC) = 1.0000 /------------------------- H003 | | /------------------------------------------------------------------------- H004 6------------------------5 | \------------------------ H002 | \ H001 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_6 --> H003 2 1 1.000 2 ==> 1 node_6 --> node_5 1 1 1.000 1 ==> 2 node_5 --> H004 4 1 1.000 1 ==> 2 5 1 1.000 1 ==> 2 6 1 1.000 2 ==> 1 node_5 --> H002 7 1 1.000 0 --> 1 ALTree-v1.3.2/test/paup/ancestor_present/association/test.tree000066400000000000000000000254521412112337500245040ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Thu Feb 16 14:04:23 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_present/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_2 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_3 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_4 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_5 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_6 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_7 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_8 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_9 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_10 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_11 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_13 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_14 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_16 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_17 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_19 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_20 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_21 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_22 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_23 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_24 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_25 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_26 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_27 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_28 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_29 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_30 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_32 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_33 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_34 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_35 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_36 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_37 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_38 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_40 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_41 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_42 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_43 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_44 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_45 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_46 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_47 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_48 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_49 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_50 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_51 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_52 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_53 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_54 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_55 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_56 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_57 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_58 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_59 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_60 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_61 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_63 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_64 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_65 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_66 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_67 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_68 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_69 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_70 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_71 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_72 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_73 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_74 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_75 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_76 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_77 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_78 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_79 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_80 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_81 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_82 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_83 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_84 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_85 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_86 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_87 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_88 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_89 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005),H000),H010); End; ALTree-v1.3.2/test/paup/ancestor_present/localisation/000077500000000000000000000000001412112337500230015ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/ancestor_present/localisation/caco.loc000066400000000000000000000021451412112337500244070ustar00rootroot00000000000000Localisation method using S-character Results: site number 7 sens 1-->2 V_i = 3.47439614486152 site number 11 sens 2-->1 V_i = 0 site number 12 sens 2-->1 V_i = 0 site number 3 sens 2-->1 V_i = 0 site number 8 sens 2-->1 V_i = 0 site number 7 sens 2-->1 V_i = 0 site number 4 sens 2-->1 V_i = 0 site number 10 sens 2-->1 V_i = 0 site number 13 sens 0-->1 V_i = 0 site number 5 sens 2-->1 V_i = 0 site number 9 sens 1-->2 V_i = -0.267261241912424 site number 8 sens 1-->2 V_i = -0.267261241912424 site number 1 sens 2-->1 V_i = -0.267261241912424 site number 4 sens 1-->2 V_i = -0.267261241912424 site number 3 sens 1-->2 V_i = -0.267261241912424 site number 10 sens 1-->2 V_i = -0.267261241912424 site number 9 sens 2-->1 V_i = -0.267261241912424 site number 2 sens 2-->1 V_i = -0.267261241912424 site number 5 sens 1-->2 V_i = -0.267261241912424 site number 11 sens 1-->2 V_i = -0.377964473009227 site number 1 sens 1-->2 V_i = -0.377964473009227 site number 2 sens 1-->2 V_i = -0.377964473009227 site number 12 sens 1-->2 V_i = -0.462910049886276 site number 13 sens 1-->0 V_i = -0.462910049886276 ALTree-v1.3.2/test/paup/ancestor_present/localisation/caco.paup000066400000000000000000000021161412112337500245750ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; ancstates *anc vector = 222222222222; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/ancestor_present/localisation/et_caco.paup000066400000000000000000000022061412112337500252650ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 222221122222? H001 112222222222? H003 221122222222? H000 2222222222220 H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; ancstates *anc vector = 222222222222?; end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/ancestor_present/localisation/nb_cas_control.txt000066400000000000000000000003221412112337500265240ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H000 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/ancestor_present/localisation/run-prog000077500000000000000000000007031412112337500245000ustar00rootroot00000000000000#!/bin/sh -x # To optain the paup input file containing the S character ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.5 # To run paup paup et_caco.paup # To perform the localisation test on the 89 equiparsimonious trees ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l > caco.loc ALTree-v1.3.2/test/paup/ancestor_present/localisation/test.res.log000066400000000000000000017130661412112337500252710ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Thu Jan 12 21:57:28 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "anc" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------21 | | /---------- H003 | +----------------------------------------20 | | \---------- H005 ---------22 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 | | /-------17 \--------- H011 | | | | /--------- H008 | +-------16 /--------18 | \--------- H006 | | | | | \------------------ H009 /-------19 | | | \--------------------------- H014 | | /-------20 \------------------------------------- H013 | | | \---------------------------------------------- H001 | /-------22 /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 3 16 17 3 0 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H009 | | | \--------------------------- H014 /-------19 | | /--------- H007 | | | | \--------------------------18--------- H012 /-------20 | | | \--------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------- H002 | /-----16 /------- H008 | \------15 /-----17 \------- H006 | | /-----18 \---------------------- H009 | | | \----------------------------- H007 /------19 | +------------------------------------ H012 | | /-----20 \------------------------------------ H011 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 | /--------17--------------------------- H007 | | | +--------------------------- H012 /-------18 | | | \--------------------------- H011 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | | \----------------------------------------------------- H013 | +------------------------------------------------------------ H001 /----24 | | /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9) 20 0 0 0 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------------- H002 | | /---------- H008 +---------15 /--------16 \---------- H006 | | | +--------------------- H014 | | | \--------------------- H009 /---------17 | +------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------20 | | /---------- H003 | +----------------------------------------19 | | \---------- H005 ---------21 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | | \------------------------------------------ H001 | +---------------------------------------------------- H013 /---------21 | | /---------- H003 | +----------------------------------------20 | | \---------- H005 ---------22 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 | | /-------17 \--------- H011 | | | | /--------- H008 | +-------16 /--------18 | \--------- H006 | | | | | \------------------ H009 /-------19 | | | \--------------------------- H014 | | /-------20 \------------------------------------- H001 | | | \---------------------------------------------- H013 | /-------22 /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------- H002 | | /-------- H008 /------16------15 | | \-------- H006 | | | \---------------- H009 /------18 | | /-------- H007 | | | | \--------------17-------- H012 /-------19 | | | \-------- H011 | | /------20 \-------------------------------- H014 | | /------21 \----------------------------------------- H013 | | | \------------------------------------------------- H001 | /------23 /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 | | /------18 \---------------- H009 | | | | /-------- H008 /-------19 \--------------17 | | \-------- H006 | | /------20 \-------------------------------- H014 | | /------21 \----------------------------------------- H013 | | | \------------------------------------------------- H001 | /------23 /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------- H002 | | /------- H007 | | /-----16------15------- H012 | | | | | \------- H011 /-----17 | | | \--------------- H009 | | /-----18 \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------23 /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 | /-----16 /-----19 | \--------------- H012 | +-----18 | | | /------- H008 | | \-------------17 /------20 | \------- H006 | | | | | \----------------------------- H009 /-----21 | | | \------------------------------------ H014 | | /-----22 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 | /-----16 /-----18 | \--------------- H012 | | | | +-----17---------------------- H008 | | | /------19 | \---------------------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------23 /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 | | \------15 /-----19-----17 \------- H011 | | | | | \---------------------- H009 | | /------20 | /------- H008 | | \--------------------18 | | \------- H006 /-----21 | | | \------------------------------------ H014 | | /-----22 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /------15 | \-------- H009 /------17 | | /-------- H008 | \------16 /------18 \-------- H006 | | | \------------------------ H012 /-------19 | +-------------------------------- H007 | | /------20 \-------------------------------- H011 | | /------21 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 3 17 18 2 0 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H014 /-------20 | | /--------- H007 | | | | \--------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------23 | | /--------- H003 | +--------------------------------------------22 | | \--------- H005 --------24 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /------15 | \-------- H009 | /------16---------------- H008 | | /------17 \---------------- H006 | | | \------------------------ H012 /-------18 | +-------------------------------- H007 | | /------19 \-------------------------------- H011 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 3 17 18 2 0 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H006 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H014 | /------20 /-------- H007 | | | | \-------------------------------19-------- H012 /------21 | | | \-------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------------------- H002 | | /--------- H008 | /-------15 /--------17 | \--------- H006 | +-------16 | | \------------------ H014 | | | \--------------------------- H009 /-------18 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------19 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------------------- H002 | | /--------- H008 | /-------15 /--------17 | \--------- H014 | +-------16 | | \------------------ H006 | | | \--------------------------- H009 /-------18 | +------------------------------------- H007 | | | +------------------------------------- H012 /-------19 | | | \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | +------15-------- H012 /------16 | | | \-------- H011 | | | +---------------- H009 /------17 | | | \---------------- H006 | | /-------18 \------------------------ H008 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H013 | | | \------------------------------------------------- H001 | /------22 /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H006 | | | \--------------------- H014 /---------19 | | /---------- H007 | | | | \-------------------18---------- H012 /--------20 | | | \---------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------22 | | /---------- H003 | +----------------------------------------21 | | \---------- H005 ---------23 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----20 | | | \-------------------- H009 | | | | /------- H008 /----21 \------------------------19 | | \------- H006 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /------------------------15 | \------- H009 | | /------- H007 | /----16 /-----20 | \------- H011 | | /-----17 | | | \------------- H012 | | /-----18 /----21 | | \-------------------- H006 | | \----19 | | \--------------------------- H008 /-----22 | | | \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------- H002 | | /-------- H008 /------16------15 | | \-------- H006 | | /------17 \---------------- H014 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 | | \------15 /-----19-----17 \------- H011 | | | | | \---------------------- H009 | | /------20 | /------- H008 | | \--------------------18 | | \------- H006 /-----21 | | | \------------------------------------ H014 | | /-----22 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 | /-------15--------- H014 | | | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 3 3 3 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H006 | \-------17 /-------20 \------------------ H014 | | | | /--------- H007 | | | /-------21 \--------------------------19--------- H012 | | | | | \--------- H011 | | | \---------------------------------------------- H013 | /-------23------------------------------------------------------- H001 | | | | /--------- H003 | +--------------------------------------------22 --------24 | \--------- H005 | | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 3 16 17 2 0 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 | /-------15--------- H009 | | /-------16 \--------- H006 | | /--------17 \------------------ H008 | | | \--------------------------- H014 /-------19 | | /--------- H007 | | | | \--------------------------18--------- H012 /-------20 | | | \--------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------- H002 | /---------15---------- H009 | | | \---------- H006 /--------17 | | /---------- H008 | \---------16 | \---------- H014 /---------19 | | /---------- H007 | | | | \-------------------18---------- H012 /--------20 | | | \---------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------22 | | /---------- H003 | +----------------------------------------21 | | \---------- H005 ---------23 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------- H002 | /---------15---------- H009 | | | \---------- H006 /--------16 | +--------------------- H008 | | | \--------------------- H014 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------21 | | /---------- H003 | +----------------------------------------20 | | \---------- H005 ---------22 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 0 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 | /-------15--------- H014 | | | \--------- H009 /-------16 | +------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 | /-----16 /-----19 | \--------------- H012 | +-----18 | | | /------- H008 | | \-------------17 /------20 | \------- H006 | | | | | \----------------------------- H009 /-----21 | | | \------------------------------------ H014 | | /-----22 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------------- H002 | | /------- H008 /-----17 /------15 | | | \------- H006 | \-----16 /-----18 \--------------- H014 | | /------19 \----------------------------- H009 | | | \------------------------------------ H007 /-----20 | +-------------------------------------------- H012 | | /-----21 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----20 | | | \-------------------- H009 | | | | /------- H008 /----21 \------------------------19 | | \------- H006 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------------- H002 | | /------- H008 /-----17 /------15 | | | \------- H014 | \-----16 /-----18 \--------------- H006 | | /------19 \----------------------------- H009 | | | \------------------------------------ H007 /-----20 | +-------------------------------------------- H012 | | /-----21 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | | \----------------------------------------------------- H001 | +------------------------------------------------------------ H013 /----24 | | /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------------ H002 | | /------------ H007 /----18 | | | /----16 /------ H012 | | | \----15 | \----17 \------ H011 /----19 | | | \------------------ H009 | | /-----20 \------------------------------ H006 | | /----21 \------------------------------------ H008 | | /----22 \------------------------------------------- H014 | | /----23 \------------------------------------------------- H013 | | | \------------------------------------------------------- H001 | /----25 /------ H003 | +-----------------------------------------------------24 | | \------ H005 -----26 | | \------------------------------------------------------------- H000 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------------ H002 | | /------------ H007 /----18 | | | /----16 /------ H012 | | | \----15 | \----17 \------ H011 /----19 | | | \------------------ H009 | | /-----20 \------------------------------ H006 | | /----21 \------------------------------------ H008 | | /----22 \------------------------------------------- H014 | | /----23 \------------------------------------------------- H001 | | | \------------------------------------------------------- H013 | /----25 /------ H003 | +-----------------------------------------------------24 | | \------ H005 -----26 | | \------------------------------------------------------------- H000 | \------------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 3 3 3 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /------- H002 /------15 | \------- H009 /-----16 | \--------------- H014 /-----17 | \---------------------- H008 /-----18 | \----------------------------- H006 /------19 | \------------------------------------ H012 | /-----20-------------------------------------------- H007 | | /-----21 \-------------------------------------------- H011 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 20 21 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9) 20 0 0 0 H010 (2) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------------------- H002 | | /---------- H008 +---------15 /--------16 \---------- H014 | | | +--------------------- H009 | | | \--------------------- H006 /---------17 | +------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | | \------------------------------------------ H013 | +---------------------------------------------------- H001 /---------20 | | /---------- H003 | +----------------------------------------19 | | \---------- H005 ---------21 | | \---------------------------------------------------- H000 | \--------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | | \---------------------------------------------- H001 | +------------------------------------------------------- H013 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 | /-----16 /-----18 | \--------------- H012 | | | | +-----17---------------------- H008 | | | /------19 | \---------------------- H006 | | | | | \----------------------------- H009 /-----20 | | | \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------23 /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 | | /------18 \---------------- H009 | | | | /-------- H008 /-------19 \--------------17 | | \-------- H006 | | /------20 \-------------------------------- H014 | | /------21 \----------------------------------------- H001 | | | \------------------------------------------------- H013 | /------23 /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | +------15-------- H012 /------16 | | | \-------- H011 | | | +---------------- H009 /------17 | | | \---------------- H006 | | /-------18 \------------------------ H008 | | /------19 \-------------------------------- H014 | | /------20 \----------------------------------------- H001 | | | \------------------------------------------------- H013 | /------22 /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 21 22 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9) 21 0 0 1 H010 (2) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | | \---------------------------------------------- H001 | +------------------------------------------------------- H013 /-------21 | | /--------- H003 | +--------------------------------------------20 | | \--------- H005 --------22 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H013 | +---------------------------------------------------------- H001 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-----------15 | \------- H009 | /-----18 /------- H007 | | /----16 | | | \------- H011 /----19 \-----17 | | \------------- H012 | | /-----20 \--------------------------- H006 | | /----21 \--------------------------------- H008 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------- H007 | /----15 | | \------- H011 /----18 /-----16 | | | \------------- H012 | +-----17 | | \-------------------- H006 /-----19 | | | \--------------------------- H009 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----24 /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 1 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------- H002 | | /------- H007 | | /-----16------15------- H012 | | | | | \------- H011 /-----17 | | | \--------------- H009 | | /-----18 \---------------------- H006 | | /------19 \----------------------------- H008 | | /-----20 \------------------------------------ H014 | | /-----21 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------23 /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /------------------15 | \------- H009 | | /------- H007 /----19 /----16 | | | \------- H011 | | /-----17 | | | \------------- H012 /-----20 \-----18 | | \-------------------- H006 | | /----21 \--------------------------------- H008 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-------------15 | \------- H009 | | /------- H007 | /------16 /-----18 | \------- H011 | +-----17 | | \--------------- H012 /-----19 | | | \---------------------- H006 | | /------20 \----------------------------- H008 | | /-----21 \------------------------------------ H014 | | /-----22 \-------------------------------------------- H013 | | | \--------------------------------------------------- H001 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 | | | /-----16 /------- H012 /----18 | \----15 | +-----17 \------- H011 | | | | | \-------------------- H009 /-----19 | | | \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H013 | | | \----------------------------------------------------- H001 | /----24 /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H008 | | /------16 | | | \-------- H014 /-------19 \------17 | | \---------------- H006 | | | \-------------------------------- H012 /------20 | +----------------------------------------- H007 | | /------21 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 0 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /-------- H002 /------15 | \-------- H009 /------17 | | /-------- H008 | \------16 /------18 \-------- H014 | | /-------19 \------------------------ H006 | | | \-------------------------------- H012 /------20 | +----------------------------------------- H007 | | /------21 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /--------- H002 /-------15 | \--------- H009 | | /--------- H008 /-------17-------16 | | \--------- H014 | | /--------18 \------------------ H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | | \---------------------------------------------- H013 | +------------------------------------------------------- H001 /-------22 | | /--------- H003 | +--------------------------------------------21 | | \--------- H005 --------23 | | \------------------------------------------------------- H000 | \---------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /------------------------15 | \------- H009 | | /------- H007 | /----16 /-----20 | \------- H011 | | /-----17 | | | \------------- H012 | | /-----18 /----21 | | \-------------------- H006 | | \----19 | | \--------------------------- H008 /-----22 | | | \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------------- H007 | | | /-----16 /------- H012 /----18 | \----15 | +-----17 \------- H011 | | | | | \-------------------- H009 /-----19 | | | \--------------------------- H006 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----24 /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------- H002 | | /-------- H008 /------16------15 | | \-------- H014 | | /------17 \---------------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 22 23 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9) 22 0 0 0 H010 (2) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7955 Rescaled consistency index (RC) = 0.4700 /---------------- H002 | | /-------- H008 /------16------15 | | \-------- H014 | | /------17 \---------------- H009 | | /-------18 \------------------------ H006 | | | \-------------------------------- H012 /------19 | +----------------------------------------- H007 | | /------20 \----------------------------------------- H011 | | | \------------------------------------------------- H013 | +--------------------------------------------------------- H001 /------22 | | /-------- H003 | +-----------------------------------------------21 | | \-------- H005 -------23 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-----------15 | \------- H009 | /-----18 /------- H007 | | /----16 | | | \------- H011 /----19 \-----17 | | \------------- H012 | | /-----20 \--------------------------- H006 | | /----21 \--------------------------------- H008 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------24 | | /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 26 root 0 0 0 25 26 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9) 25 0 0 1 H010 (2) 26 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /------------------15 | \------- H009 | | /------- H007 /----19 /----16 | | | \------- H011 | | /-----17 | | | \------------- H012 /-----20 \-----18 | | \-------------------- H006 | | /----21 \--------------------------------- H008 | | /-----22 \---------------------------------------- H014 | | /-----23 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----25 /------- H003 | +---------------------------------------------------24 | | \------- H005 ------26 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 node_26 --> H010 5 1 1.000 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /--------------------------- H002 | | /------- H007 | /----15 | | \------- H011 /----18 /-----16 | | | \------------- H012 | +-----17 | | \-------------------- H006 /-----19 | | | \--------------------------- H009 | | /----20 \--------------------------------- H008 | | /-----21 \---------------------------------------- H014 | | /-----22 \---------------------------------------------- H001 | | | \----------------------------------------------------- H013 | /----24 /------- H003 | +---------------------------------------------------23 | | \------- H005 ------25 | | \------------------------------------------------------------ H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | | \------------------------------------------------- H001 | +--------------------------------------------------------- H013 /------23 | | /-------- H003 | +-----------------------------------------------22 | | \-------- H005 -------24 | | \--------------------------------------------------------- H000 | \----------------------------------------------------------------- H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 24 25 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9) 24 0 0 1 H010 (2) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /------- H002 /-------------15 | \------- H009 | | /------- H007 | /------16 /-----18 | \------- H011 | +-----17 | | \--------------- H012 /-----19 | | | \---------------------- H006 | | /------20 \----------------------------- H008 | | /-----21 \------------------------------------ H014 | | /-----22 \-------------------------------------------- H001 | | | \--------------------------------------------------- H013 | /------24 /------- H003 | +-------------------------------------------------23 | | \------- H005 ------25 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 node_25 --> H010 5 1 1.000 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 23 24 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9) 23 0 0 1 H010 (2) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7727 Rescaled consistency index (RC) = 0.4368 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | | \--------------------------------------------------- H001 | +---------------------------------------------------------- H013 /------23 | | /------- H003 | +-------------------------------------------------22 | | \------- H005 ------24 | | \---------------------------------------------------------- H000 | \------------------------------------------------------------------ H010 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 ALTree-v1.3.2/test/paup/ancestor_present/localisation/test.tree000066400000000000000000000255511412112337500246510ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Thu Jan 12 21:57:28 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_present/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.11 sec) ] tree PAUP_1 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_2 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_3 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_4 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_5 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_6 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_7 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_8 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_9 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_10 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_11 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_13 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_14 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_16 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_17 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_19 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_20 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_21 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_22 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_23 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_24 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_25 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_26 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_27 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_28 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_29 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_30 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_32 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_33 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_34 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_35 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_36 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_37 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_38 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_40 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_41 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010); tree PAUP_42 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_43 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_44 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_45 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_46 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_47 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_48 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_49 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_50 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_51 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_52 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_53 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_54 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_55 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_56 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_57 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_58 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_59 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_60 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_61 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_63 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_64 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_65 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_66 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005),H000),H010); tree PAUP_67 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_68 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_69 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_70 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_71 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_72 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_73 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010); tree PAUP_74 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_75 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_76 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_77 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_78 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_79 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_80 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_81 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010); tree PAUP_82 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_83 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_84 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_85 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_86 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_87 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005),H000),H010); tree PAUP_88 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005),H000),H010); tree PAUP_89 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005),H000),H010); End; ALTree-v1.3.2/test/paup/outgr_absent/000077500000000000000000000000001412112337500174365ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/outgr_absent/association/000077500000000000000000000000001412112337500217525ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/outgr_absent/association/1_caco.asso000066400000000000000000000043021412112337500237650ustar00rootroot00000000000000 /----* H002 case/control:8/6 | /----* H007 case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 case/control:1/4 | | Site: 11 Sens: 2-->1 |----* 15 case/control:13/18 | | Site: 1 Sens: 1-->2 | | Site: 2 Sens: 1-->2 | \----* H011 case/control:5/1 /----* 17 case/control:66/41 | | Site: 10 Sens: 2-->1 | | Site: 9 Sens: 2-->1 | | /----* H008 case/control:9/2 | | | Site: 9 Sens: 1-->2 | |----* 16 case/control:37/15 | | | Site: 11 Sens: 2-->1 | | \----* H006 case/control:28/13 | \----* H009 case/control:8/2 | Site: 12 Sens: 2-->1 /----* 18 case/control:70/43 | | Site: 8 Sens: 2-->1 | | Site: 1 Sens: 2-->1 | | Site: 2 Sens: 2-->1 | \----* H014 case/control:4/2 /----* 19 case/control:72/47 | | Site: 6 Sens: 2-->1 | | Site: 7 Sens: 2-->1 | \----* H013 case/control:2/4 |----* H010 case/control:7/5 | Site: 5 Sens: 2-->1 -----* 21 case/control:102/74 | | [0] ddl=3 chi2=1.41 p_value_chi2=0.704 | [1] ddl=5 chi2=3.37 p_value_chi2=0.641 | [2] ddl=6 chi2=3.43 p_value_chi2=0.778 | [3] ddl=9 chi2=11.80 p_value_chi2=0.217 | [4] ddl=12 chi2=18.05 p_value_chi2=0.109 |----* H001 case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 | /----* H003 case/control:5/6 | | Site: 4 Sens: 2-->1 \----* 20 case/control:12/13 | Site: 3 Sens: 2-->1 \----* H005 case/control:7/7 Site: 12 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0.5 level 4 p-value (non corrected) 0.5 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 ALTree-v1.3.2/test/paup/outgr_absent/association/caco.paup000066400000000000000000000021221412112337500235430ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; [ancstates *anc vector = 2222222222221;] end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/outgr_absent/association/nb_cas_control.txt000066400000000000000000000003031412112337500254740ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/outgr_absent/association/run_altree000077500000000000000000000005431412112337500240420ustar00rootroot00000000000000#!/bin/sh -x # To run paup paup caco.paup # To perform the association test (on the first tree found in the file # test.res.log) # The outgroup is removed from the file before analysis # (option --remove-outgroup) ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ --remove-outgroup -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso ALTree-v1.3.2/test/paup/outgr_absent/association/test.res.log000066400000000000000000016334571412112337500242470ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Thu Jan 12 21:57:50 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "standard" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H013 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 2 16 17 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | /---------17 \--------------------- H009 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | /------16 /-------- H008 | \------15 /------17 \-------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 | /---------17------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H001 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H006 | | | +------------------------ H014 | | | \------------------------ H009 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H001 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H013 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H001 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 2 17 18 1 0 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------15 | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H014 /--------20 | | /---------- H007 | | | | \------------------------------19---------- H012 /---------21 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------23--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 0 0 0 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 | /-------16------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 2 17 18 1 0 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------16 | \------------------ H006 /--------17 | \--------------------------- H008 /-------18 | \------------------------------------- H014 | /-------20 /--------- H007 | | | | \-----------------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H006 | +--------16 | | \--------------------- H014 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H014 | +--------16 | | \--------------------- H006 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 /----------15 | \------------ H009 | | /------------ H008 /----------17----------16 | | \------------ H006 | | | \------------------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H014 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 2 2 2 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /-------------------15 | \---------- H009 | /---------18 /---------- H008 | | /---------16 | | | \---------- H006 | \--------17 /--------20 \--------------------- H014 | | | | /---------- H007 | | | /---------21 \------------------------------19---------- H012 | | | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------23 +--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 2 16 17 1 0 1 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H009 | | /--------16 \---------- H006 | | /---------17 \--------------------- H008 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------17 | | /------------ H008 | \----------16 | \------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------16 | +------------------------ H008 | | | \------------------------ H014 /-----------18 | | /------------ H007 | | | | \----------------------17------------ H012 /----------19 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------16 | +--------------------- H008 | | /---------17 \--------------------- H006 | | | \------------------------------- H012 /--------18 | +------------------------------------------ H007 | | /---------19 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H006 | \------16 /-------18 \---------------- H014 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H014 | \------16 /-------18 \---------------- H006 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H013 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H013 | | | \------------------------------------------------------------ H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H001 | | | \------------------------------------------------------------ H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H014 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H006 /------19 | \----------------------------------------- H012 | /------20------------------------------------------------- H007 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H014 | | | +------------------------ H009 | | | \------------------------ H006 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H014 /-------19 \-------17 | | \------------------ H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H014 | | /-------19 \--------------------------- H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H014 | | /---------18 \--------------------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H009 | | /-------18 \--------------------------- H006 | | | \------------------------------------- H012 /-------19 | +---------------------------------------------- H007 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 ALTree-v1.3.2/test/paup/outgr_absent/association/test.tree000066400000000000000000000251641412112337500236220ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Thu Jan 12 21:57:50 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_absent/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005)); tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005)); tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005)); tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005)); tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005)); tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005)); tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005)); End; ALTree-v1.3.2/test/paup/outgr_absent/localisation/000077500000000000000000000000001412112337500221175ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/outgr_absent/localisation/caco.loc000066400000000000000000000023721412112337500235270ustar00rootroot00000000000000Localisation method using S-character Results: site number 10 sens 2-->1 V_i = 3.32820117735137 site number 11 sens 1-->2 V_i = 0.792593923901217 site number 12 sens 1-->2 V_i = 0.792593923901217 site number 4 sens 2-->1 V_i = -0.277350098112615 site number 5 sens 2-->1 V_i = -0.277350098112615 site number 3 sens 2-->1 V_i = -0.277350098112615 site number 9 sens 2-->1 V_i = -0.277350098112615 site number 8 sens 2-->1 V_i = -0.277350098112615 site number 6 sens 2-->1 V_i = -0.392232270276368 site number 8 sens 1-->2 V_i = -0.392232270276368 site number 7 sens 2-->1 V_i = -0.392232270276368 site number 4 sens 1-->2 V_i = -0.392232270276368 site number 3 sens 1-->2 V_i = -0.392232270276368 site number 10 sens 1-->2 V_i = -0.392232270276368 site number 9 sens 1-->2 V_i = -0.392232270276368 site number 5 sens 1-->2 V_i = -0.392232270276368 site number 11 sens 2-->1 V_i = -0.480384461415261 site number 2 sens 2-->1 V_i = -0.480384461415261 site number 12 sens 2-->1 V_i = -0.480384461415261 site number 2 sens 1-->2 V_i = -0.480384461415261 site number 1 sens 2-->1 V_i = -0.480384461415261 site number 1 sens 1-->2 V_i = -0.480384461415261 site number 7 sens 1-->2 V_i = -0.554700196225229 site number 6 sens 1-->2 V_i = -0.554700196225229 ALTree-v1.3.2/test/paup/outgr_absent/localisation/caco.paup000066400000000000000000000021221412112337500237100ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; [ancstates *anc vector = 2222222222221;] end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/outgr_absent/localisation/et_caco.paup000066400000000000000000000022121412112337500244000ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 2222211222220 H001 112222222222? H003 221122222222? H000 222222222222? H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; [ancstates *anc vector = 2222222222221?;] end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/outgr_absent/localisation/nb_cas_control.txt000066400000000000000000000003031412112337500256410ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/outgr_absent/localisation/run-prog000077500000000000000000000011731412112337500236200ustar00rootroot00000000000000#!/bin/sh -x # To add the character S # p=102 case haplotypes/176 haplotypes # The outgroup is not specified in the file nb_cas_control.txt. The # option --outgroup must then be used ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.58 \ --outgroup H000 # To run paup on the file containing the character S paup et_caco.paup # To perform the localisation test # All 89 equiparsimonious trees are analysed ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc ALTree-v1.3.2/test/paup/outgr_absent/localisation/test.res.log000066400000000000000000016662771412112337500244220ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Fri Jan 13 11:12:53 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "standard" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H013 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 3 16 17 3 0 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | /---------17 \--------------------- H009 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | /------16 /-------- H008 | \------15 /------17 \-------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 | /---------17------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H001 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H006 | | | +------------------------ H014 | | | \------------------------ H009 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H001 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H013 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H001 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 1 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 3 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 3 17 18 2 0 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------15 | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H014 /--------20 | | /---------- H007 | | | | \------------------------------19---------- H012 /---------21 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------23--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 | /-------16------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 3 17 18 2 0 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------16 | \------------------ H006 /--------17 | \--------------------------- H008 /-------18 | \------------------------------------- H014 | /-------20 /--------- H007 | | | | \-----------------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H006 | +--------16 | | \--------------------- H014 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H014 | +--------16 | | \--------------------- H006 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 3 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 /----------15 | \------------ H009 | | /------------ H008 /----------17----------16 | | \------------ H006 | | | \------------------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H014 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 3 3 3 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /-------------------15 | \---------- H009 | /---------18 /---------- H008 | | /---------16 | | | \---------- H006 | \--------17 /--------20 \--------------------- H014 | | | | /---------- H007 | | | /---------21 \------------------------------19---------- H012 | | | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------23 +--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 3 16 17 2 0 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H009 | | /--------16 \---------- H006 | | /---------17 \--------------------- H008 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------17 | | /------------ H008 | \----------16 | \------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------16 | +------------------------ H008 | | | \------------------------ H014 /-----------18 | | /------------ H007 | | | | \----------------------17------------ H012 /----------19 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------16 | +--------------------- H008 | | /---------17 \--------------------- H006 | | | \------------------------------- H012 /--------18 | +------------------------------------------ H007 | | /---------19 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 1 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 1 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H006 | \------16 /-------18 \---------------- H014 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H014 | \------16 /-------18 \---------------- H006 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H013 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H013 | | | \------------------------------------------------------------ H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H001 | | | \------------------------------------------------------------ H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 3 3 3 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H014 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H006 /------19 | \----------------------------------------- H012 | /------20------------------------------------------------- H007 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H014 | | | +------------------------ H009 | | | \------------------------ H006 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 3 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 3 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 1 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 3 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 3 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 3 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 3 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H014 /-------19 \-------17 | | \------------------ H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H014 | | /-------19 \--------------------------- H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H014 | | /---------18 \--------------------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H009 | | /-------18 \--------------------------- H006 | | | \------------------------------------- H012 /-------19 | +---------------------------------------------- H007 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 3 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 3 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 3 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 3 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 ALTree-v1.3.2/test/paup/outgr_absent/localisation/test.tree000066400000000000000000000252631412112337500237670ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Fri Jan 13 11:12:53 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_absent/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005)); tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005)); tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005)); tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005)); tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005)); tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005)); tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005)); End; ALTree-v1.3.2/test/paup/outgr_present/000077500000000000000000000000001412112337500176425ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/outgr_present/association/000077500000000000000000000000001412112337500221565ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/outgr_present/association/1_caco.asso000066400000000000000000000043441412112337500241770ustar00rootroot00000000000000 /----* H002 case/control:8/6 | /----* H007 case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 case/control:1/4 | | Site: 11 Sens: 2-->1 |----* 15 case/control:13/18 | | Site: 1 Sens: 1-->2 | | Site: 2 Sens: 1-->2 | \----* H011 case/control:5/1 /----* 17 case/control:66/41 | | Site: 10 Sens: 2-->1 | | Site: 9 Sens: 2-->1 | | /----* H008 case/control:9/2 | | | Site: 9 Sens: 1-->2 | |----* 16 case/control:37/15 | | | Site: 11 Sens: 2-->1 | | \----* H006 case/control:28/13 | \----* H009 case/control:8/2 | Site: 12 Sens: 2-->1 /----* 18 case/control:70/43 | | Site: 8 Sens: 2-->1 | | Site: 1 Sens: 2-->1 | | Site: 2 Sens: 2-->1 | \----* H014 case/control:4/2 /----* 19 case/control:72/47 | | Site: 6 Sens: 2-->1 | | Site: 7 Sens: 2-->1 | \----* H013 case/control:2/4 |----* H010 case/control:7/5 | Site: 5 Sens: 2-->1 |----* H001 case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 -----* 21 case/control:200/200 | | [0] ddl=4 chi2=9.33 p_value_chi2=0.0535 | [1] ddl=6 chi2=11.24 p_value_chi2=0.083 | [2] ddl=7 chi2=11.30 p_value_chi2=0.112 | [3] ddl=10 chi2=19.46 p_value_chi2=0.035 | [4] ddl=13 chi2=25.55 p_value_chi2=0.015 | /----* H003 case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 20 case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 case/control:7/7 | Site: 12 Sens: 2-->1 \----* H000 case/control:98/126 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 ALTree-v1.3.2/test/paup/outgr_present/association/caco.paup000066400000000000000000000021221412112337500237470ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; [ancstates *anc vector = 2222222222221;] end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/outgr_present/association/nb_cas_control.txt000066400000000000000000000003221412112337500257010ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H000 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/outgr_present/association/run_altree000077500000000000000000000003061412112337500242430ustar00rootroot00000000000000#!/bin/sh -x # To run paup paup caco.paup # To perform the association test ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso ALTree-v1.3.2/test/paup/outgr_present/association/test.res.log000066400000000000000000016334571412112337500244530ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Tue Jan 10 21:04:10 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "standard" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H013 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 2 16 17 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | /---------17 \--------------------- H009 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | /------16 /-------- H008 | \------15 /------17 \-------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 | /---------17------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H001 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H006 | | | +------------------------ H014 | | | \------------------------ H009 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H001 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H013 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 2 2 2 H002 (1) 17 0 0 0 15 17 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 16 17 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H001 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 2 0 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 2 17 18 1 0 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------15 | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H014 /--------20 | | /---------- H007 | | | | \------------------------------19---------- H012 /---------21 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------23--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 0 0 0 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 | /-------16------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 2 17 18 1 0 2 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------16 | \------------------ H006 /--------17 | \--------------------------- H008 /-------18 | \------------------------------------- H014 | /-------20 /--------- H007 | | | | \-----------------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H006 | +--------16 | | \--------------------- H014 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 2 2 2 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H014 | +--------16 | | \--------------------- H006 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 /----------15 | \------------ H009 | | /------------ H008 /----------17----------16 | | \------------ H006 | | | \------------------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H014 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 2 2 2 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /-------------------15 | \---------- H009 | /---------18 /---------- H008 | | /---------16 | | | \---------- H006 | \--------17 /--------20 \--------------------- H014 | | | | /---------- H007 | | | /---------21 \------------------------------19---------- H012 | | | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------23 +--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 2 16 17 1 0 1 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H009 | | /--------16 \---------- H006 | | /---------17 \--------------------- H008 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 2 2 2 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------17 | | /------------ H008 | \----------16 | \------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------16 | +------------------------ H008 | | | \------------------------ H014 /-----------18 | | /------------ H007 | | | | \----------------------17------------ H012 /----------19 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------16 | +--------------------- H008 | | /---------17 \--------------------- H006 | | | \------------------------------- H012 /--------18 | +------------------------------------------ H007 | | /---------19 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 2 2 2 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 17 18 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H006 | \------16 /-------18 \---------------- H014 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 19 20 1 1 1 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H014 | \------16 /-------18 \---------------- H006 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H013 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H013 | | | \------------------------------------------------------------ H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H001 | | | \------------------------------------------------------------ H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 2 2 2 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H014 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H006 /------19 | \----------------------------------------- H012 | /------20------------------------------------------------- H007 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 0 0 0 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H014 | | | +------------------------ H009 | | | \------------------------ H006 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 2 2 2 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 2 15 16 1 1 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 0 0 0 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 17 18 1 1 1 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 2 19 20 2 2 2 18 19 3 1 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 3 1 3 18 19 1 1 2 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 2 H007 (3) 15 1 1 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H014 /-------19 \-------17 | | \------------------ H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H014 | | /-------19 \--------------------------- H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H014 | | /---------18 \--------------------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 2 16 17 1 1 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 0 0 0 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 H007 (3) 16 1 0 1 15 16 0 0 1 H012 (11) 15 1 1 1 H011 (14) 15 0 0 0 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H009 | | /-------18 \--------------------------- H006 | | | \------------------------------------- H012 /-------19 | +---------------------------------------------- H007 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 2 21 22 3 3 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 2 22 23 2 2 2 21 22 3 1 3 20 21 1 1 2 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 2 21 22 2 2 2 20 21 3 1 3 19 20 1 1 2 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 2 16 17 0 0 1 H007 (3) 16 1 1 1 H011 (14) 16 0 0 0 H012 (11) 17 1 0 1 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 2 15 16 0 0 1 H007 (3) 15 1 1 1 H011 (14) 15 0 0 0 H012 (11) 16 1 0 1 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_16 --> H012 11 1 0.333 2 --> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 ALTree-v1.3.2/test/paup/outgr_present/association/test.tree000066400000000000000000000251641412112337500240260ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Tue Jan 10 21:04:10 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_present/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005)); tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005)); tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005)); tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005)); tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005)); tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005)); tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005)); End; ALTree-v1.3.2/test/paup/outgr_present/localisation/000077500000000000000000000000001412112337500223235ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/outgr_present/localisation/caco.loc000066400000000000000000000023721412112337500237330ustar00rootroot00000000000000Localisation method using S-character Results: site number 10 sens 2-->1 V_i = 3.32820117735137 site number 11 sens 1-->2 V_i = 0.792593923901217 site number 12 sens 1-->2 V_i = 0.792593923901217 site number 4 sens 2-->1 V_i = -0.277350098112615 site number 5 sens 2-->1 V_i = -0.277350098112615 site number 3 sens 2-->1 V_i = -0.277350098112615 site number 9 sens 2-->1 V_i = -0.277350098112615 site number 8 sens 2-->1 V_i = -0.277350098112615 site number 6 sens 2-->1 V_i = -0.392232270276368 site number 8 sens 1-->2 V_i = -0.392232270276368 site number 7 sens 2-->1 V_i = -0.392232270276368 site number 4 sens 1-->2 V_i = -0.392232270276368 site number 3 sens 1-->2 V_i = -0.392232270276368 site number 10 sens 1-->2 V_i = -0.392232270276368 site number 9 sens 1-->2 V_i = -0.392232270276368 site number 5 sens 1-->2 V_i = -0.392232270276368 site number 11 sens 2-->1 V_i = -0.480384461415261 site number 2 sens 2-->1 V_i = -0.480384461415261 site number 12 sens 2-->1 V_i = -0.480384461415261 site number 2 sens 1-->2 V_i = -0.480384461415261 site number 1 sens 2-->1 V_i = -0.480384461415261 site number 1 sens 1-->2 V_i = -0.480384461415261 site number 7 sens 1-->2 V_i = -0.554700196225229 site number 6 sens 1-->2 V_i = -0.554700196225229 ALTree-v1.3.2/test/paup/outgr_present/localisation/caco.paup000066400000000000000000000021221412112337500241140ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H000 222222222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 ; end; begin assumptions; [ancstates *anc vector = 2222222222221;] end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/outgr_present/localisation/et_caco.paup000066400000000000000000000022121412112337500246040ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 222221122222? H001 112222222222? H003 221122222222? H000 2222222222220 H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; [ancstates *anc vector = 2222222222221?;] end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full root=outgroup warnroot=no opt=deltran [- acctran]; outgroup H000; hsearch; savetrees from=1 to=1000 file= test.tree root=yes format=altnexus; cleartrees nowarn=yes; gettrees rooted=yes file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=outgroup apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/outgr_present/localisation/nb_cas_control.txt000066400000000000000000000003221412112337500260460ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H000 m098 c126 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/outgr_present/localisation/run-prog000077500000000000000000000007041412112337500240230ustar00rootroot00000000000000#!/bin/sh -x # To optain the paup input file containing the S character ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.5 # To run paup paup et_caco.paup # To perform the localisation test on the 89 equiparsimonious trees ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc ALTree-v1.3.2/test/paup/outgr_present/localisation/test.res.log000066400000000000000000016662771412112337500246260ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Tue Jan 10 21:29:10 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) AncStates = "standard" Tree number 1: Branch lengths and linkages for tree #1 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 2: Branch lengths and linkages for tree #2 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 /---------18 | | /---------- H007 | | | | \-------------------17---------- H012 /--------19 | | | \---------- H011 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 3: Branch lengths and linkages for tree #3 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H013 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 4: Branch lengths and linkages for tree #4 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 5: Branch lengths and linkages for tree #5 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 3 17 19 2 2 3 16 17 3 0 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | /---------17 \--------------------- H009 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 6: Branch lengths and linkages for tree #6 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 7: Branch lengths and linkages for tree #7 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 8: Branch lengths and linkages for tree #8 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 9: Branch lengths and linkages for tree #9 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------------- H002 | /------16 /-------- H008 | \------15 /------17 \-------- H006 | | /-------18 \------------------------ H009 | | | \-------------------------------- H007 /------19 | +----------------------------------------- H012 | | /------20 \----------------------------------------- H011 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 10: Branch lengths and linkages for tree #10 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 1 1 1 17 18 2 2 2 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 18 2 2 2 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------------------- H002 | | /---------- H008 /--------16---------15 | | \---------- H006 | | | \--------------------- H009 | /---------17------------------------------- H007 | | | +------------------------------- H012 /--------18 | | | \------------------------------- H011 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 11: Branch lengths and linkages for tree #11 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H001 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 12: Branch lengths and linkages for tree #12 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H006 | | | +------------------------ H014 | | | \------------------------ H009 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 13: Branch lengths and linkages for tree #13 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------ H002 | | /------------ H007 | | +----------15------------ H012 | | /----------17 \------------ H011 | | | | /------------ H008 | +----------16 /-----------18 | \------------ H006 | | | | | \------------------------ H009 /----------19 | | | \------------------------------------ H014 | | | \------------------------------------------------- H001 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H013 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 14: Branch lengths and linkages for tree #14 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 2 3 H002 (1) 17 0 0 0 15 17 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 16 17 2 1 2 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H009 (12) 17 2 1 2 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 | | /--------17 \---------- H011 | | | | /---------- H008 | +---------16 /---------18 | \---------- H006 | | | | | \--------------------- H009 /--------19 | | | \------------------------------- H014 | | /---------20 \------------------------------------------ H001 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------22 | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 15: Branch lengths and linkages for tree #15 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 16: Branch lengths and linkages for tree #16 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 17: Branch lengths and linkages for tree #17 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 2 20 21 2 2 2 19 20 1 1 3 18 19 2 2 2 16 18 3 1 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H009 (12) 16 1 1 1 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H014 (5) 19 2 0 2 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | | \------------------ H009 /--------18 | | /--------- H007 | | | | \----------------17--------- H012 /-------19 | | | \--------- H011 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 18: Branch lengths and linkages for tree #18 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 19: Branch lengths and linkages for tree #19 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 20: Branch lengths and linkages for tree #20 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 21: Branch lengths and linkages for tree #21 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 2 H001 (7) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 22: Branch lengths and linkages for tree #22 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 23: Branch lengths and linkages for tree #23 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H014 (5) 20 2 2 2 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H006 | | | \--------------------------- H012 /-------19 | +------------------------------------- H007 | | /-------20 \------------------------------------- H011 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 24: Branch lengths and linkages for tree #24 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 3 18 20 2 2 3 17 18 2 0 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------15 | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H014 /--------20 | | /---------- H007 | | | | \------------------------------19---------- H012 /---------21 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------23--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.333 2 --> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 25: Branch lengths and linkages for tree #25 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H014 (5) 19 2 2 2 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 | /-------16------------------ H008 | | /--------17 \------------------ H006 | | | \--------------------------- H012 /-------18 | +------------------------------------- H007 | | /-------19 \------------------------------------- H011 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 26: Branch lengths and linkages for tree #26 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 1 1 2 18 20 2 2 3 17 18 2 0 3 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 16 1 0 1 H008 (4) 17 1 0 1 H014 (5) 18 0 0 1 19 20 2 1 2 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------16 | \------------------ H006 /--------17 | \--------------------------- H008 /-------18 | \------------------------------------- H014 | /-------20 /--------- H007 | | | | \-----------------------------------19--------- H012 /-------21 | | | \--------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_18 --> node_17 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_17 --> node_16 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H008 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 27: Branch lengths and linkages for tree #27 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H006 | +--------16 | | \--------------------- H014 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 28: Branch lengths and linkages for tree #28 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 3 3 3 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 17 1 1 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------- H002 | | /---------- H008 | /---------15 /---------17 | \---------- H014 | +--------16 | | \--------------------- H006 | | | \------------------------------- H009 /--------18 | +------------------------------------------ H007 | | | +------------------------------------------ H012 /---------19 | | | \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_17 --> H009 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 29: Branch lengths and linkages for tree #29 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H013 (6) 19 0 0 2 H001 (7) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H013 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 30: Branch lengths and linkages for tree #30 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 /----------15 | \------------ H009 | | /------------ H008 /----------17----------16 | | \------------ H006 | | | \------------------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 31: Branch lengths and linkages for tree #31 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 32: Branch lengths and linkages for tree #32 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 33: Branch lengths and linkages for tree #33 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 34: Branch lengths and linkages for tree #34 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /------------------ H007 | | | /-------16 /--------- H012 | | \-------15 /-------19--------17 \--------- H011 | | | | | \--------------------------- H009 | | /-------20 | /--------- H008 | | \--------------------------18 | | \--------- H006 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 35: Branch lengths and linkages for tree #35 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H006 (13) 15 0 0 0 H014 (5) 16 2 2 2 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H006 | | /--------17 \------------------ H014 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 ==> 2 node_16 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 36: Branch lengths and linkages for tree #36 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 17 19 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 18 19 2 1 2 H008 (4) 18 1 1 1 H006 (13) 18 0 0 0 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 | | \------15 /-------19------17 \-------- H011 | | | | | \------------------------ H009 | | /------20 | /-------- H008 | | \----------------------18 | | \-------- H006 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 ==> 2 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 37: Branch lengths and linkages for tree #37 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 16 17 1 0 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------17 | | /---------- H008 | \---------16 /---------18 \---------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 --> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H012 11 1 0.500 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 38: Branch lengths and linkages for tree #38 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 2 2 3 18 20 3 3 3 15 18 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 0 0 1 H006 (13) 16 1 0 1 H014 (5) 17 1 1 2 19 20 1 0 1 H007 (3) 19 1 1 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /-------------------15 | \---------- H009 | /---------18 /---------- H008 | | /---------16 | | | \---------- H006 | \--------17 /--------20 \--------------------- H014 | | | | /---------- H007 | | | /---------21 \------------------------------19---------- H012 | | | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 ---------23 +--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------22 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_18 --> node_15 9 1 0.333 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 11 1 0.500 2 ==> 1 node_16 --> H006 9 1 0.333 2 --> 1 node_17 --> H014 10 1 0.500 1 ==> 2 node_20 --> node_19 9 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 39: Branch lengths and linkages for tree #39 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 1 1 2 17 19 2 2 3 16 17 2 0 2 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 17 0 0 1 18 19 2 1 2 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H009 | | /--------16 \---------- H006 | | /---------17 \--------------------- H008 | | | \------------------------------- H014 /--------19 | | /---------- H007 | | | | \------------------------------18---------- H012 /---------20 | | | \---------- H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_17 --> node_16 10 1 0.500 2 --> 1 13 1 0.500 0 --> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 40: Branch lengths and linkages for tree #40 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 2 2 3 17 19 3 3 3 15 17 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 16 17 0 0 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 18 19 1 0 1 H007 (3) 18 1 1 1 H012 (11) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------17 | | /------------ H008 | \----------16 | \------------ H014 /-----------19 | | /------------ H007 | | | | \----------------------18------------ H012 /----------20 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------22------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------21 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 41: Branch lengths and linkages for tree #41 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 2 2 2 16 18 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H006 (13) 15 1 1 1 H008 (4) 16 1 1 1 H014 (5) 16 1 1 1 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------ H002 | /----------15------------ H009 | | | \------------ H006 /----------16 | +------------------------ H008 | | | \------------------------ H014 /-----------18 | | /------------ H007 | | | | \----------------------17------------ H012 /----------19 | | | \------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------21------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------20 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_15 --> H006 11 1 0.333 2 ==> 1 node_16 --> H008 11 1 0.333 2 ==> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 42: Branch lengths and linkages for tree #42 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 2 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 1 1 1 H002 (1) 15 0 0 0 H014 (5) 15 2 2 2 H009 (12) 15 1 1 1 H008 (4) 16 1 1 1 H006 (13) 16 0 0 0 H012 (11) 17 0 0 0 H007 (3) 18 1 1 1 H011 (14) 18 1 1 1 H013 (6) 19 0 0 0 H010 (2) 21 1 1 1 H001 (7) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 | /---------15---------- H014 | | | \---------- H009 /--------16 | +--------------------- H008 | | /---------17 \--------------------- H006 | | | \------------------------------- H012 /--------18 | +------------------------------------------ H007 | | /---------19 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_19 --> node_18 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H008 9 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 43: Branch lengths and linkages for tree #43 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 44: Branch lengths and linkages for tree #44 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 45: Branch lengths and linkages for tree #45 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 0 H010 (2) 24 1 1 1 H001 (7) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 46: Branch lengths and linkages for tree #46 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------19 | \------------------ H012 | +--------18 | | | /--------- H008 | | \----------------17 /-------20 | \--------- H006 | | | | | \------------------------------------- H009 /-------21 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 47: Branch lengths and linkages for tree #47 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 2 3 H002 (1) 19 0 0 0 18 19 0 0 1 16 18 2 2 3 15 16 0 0 1 H007 (3) 15 1 1 2 H011 (14) 15 1 0 1 H012 (11) 16 1 0 2 17 18 2 0 2 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 19 2 1 2 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------19 | \---------------- H012 | +------18 | | | /-------- H008 | | \--------------17 /------20 | \-------- H006 | | | | | \-------------------------------- H009 /------21 | | | \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 node_18 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H012 11 1 0.500 2 --> 1 node_18 --> node_17 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_17 --> H008 9 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 48: Branch lengths and linkages for tree #48 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 49: Branch lengths and linkages for tree #49 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 /-------18 | | | /------16 /-------- H012 | | | \------15 | \------17 \-------- H011 /------20 | | | \------------------------ H009 | | | | /-------- H008 /------21 \-------------------------------19 | | \-------- H006 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 50: Branch lengths and linkages for tree #50 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H006 (13) 15 0 0 1 H014 (5) 16 2 1 2 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H006 | \------16 /-------18 \---------------- H014 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 11 1 0.500 2 ==> 1 node_15 --> H008 9 1 0.333 1 --> 2 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 51: Branch lengths and linkages for tree #51 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 1 1 3 18 20 1 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 1 0 2 15 16 0 0 1 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 17 2 0 2 19 20 2 1 2 H008 (4) 19 0 0 1 H006 (13) 19 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------20 | | | \---------------------- H009 | | | | /------- H008 /-----21 \---------------------------19 | | \------- H006 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 node_20 --> node_18 9 1 0.500 2 --> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_17 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H006 9 1 0.500 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 52: Branch lengths and linkages for tree #52 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 H002 (1) 17 0 0 0 16 17 0 0 1 15 16 1 1 1 H008 (4) 15 1 0 1 H014 (5) 15 1 1 2 H006 (13) 16 1 0 1 H009 (12) 18 1 0 1 H007 (3) 19 1 0 1 H012 (11) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /-------- H008 /------17 /------15 | | | \-------- H014 | \------16 /-------18 \---------------- H006 | | /------19 \-------------------------------- H009 | | | \----------------------------------------- H007 /------20 | +------------------------------------------------- H012 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 --> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 53: Branch lengths and linkages for tree #53 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 /-----18 | | | /-----16 /------- H012 | | | \------15 | \-----17 \------- H011 /------19 | | | \---------------------- H009 | | /-----20 \------------------------------------ H006 | | /-----21 \-------------------------------------------- H008 | | /------22 \--------------------------------------------------- H014 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 | ------24------------------------------------------------------------------ H013 | | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 54: Branch lengths and linkages for tree #54 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 55: Branch lengths and linkages for tree #55 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H013 | | | \------------------------------------------------------------ H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 56: Branch lengths and linkages for tree #56 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------------- H002 | | /------------- H007 /----18 | | | /-----16 /------- H012 | | | \----15 | \-----17 \------- H011 /-----19 | | | \-------------------- H009 | | /----20 \--------------------------------- H006 | | /-----21 \---------------------------------------- H008 | | /-----22 \---------------------------------------------- H014 | | /----23 \----------------------------------------------------- H001 | | | \------------------------------------------------------------ H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 57: Branch lengths and linkages for tree #57 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 1 1 1 18 19 3 3 3 17 18 0 0 1 16 17 1 1 1 15 16 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 H014 (5) 16 2 1 2 H008 (4) 17 1 0 1 H006 (13) 18 0 0 0 H012 (11) 19 0 0 0 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /-------- H002 /------15 | \-------- H009 /------16 | \---------------- H014 /------17 | \------------------------ H008 /-------18 | \-------------------------------- H006 /------19 | \----------------------------------------- H012 | /------20------------------------------------------------- H007 | | /------21 \------------------------------------------------- H011 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.333 2 ==> 1 10 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_17 --> node_16 11 1 0.500 1 ==> 2 node_15 --> H009 12 1 0.333 2 ==> 1 node_16 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> H008 9 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 58: Branch lengths and linkages for tree #58 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 20 root 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 3 3 3 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H007 (3) 17 1 1 1 H012 (11) 17 1 1 1 H011 (14) 17 1 1 1 H013 (6) 18 0 0 0 H010 (2) 20 1 1 1 H001 (7) 20 2 2 2 19 20 1 1 1 H003 (8) 19 1 1 1 H005 (10) 19 1 1 1 H000 (9)* 20 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------ H002 | | /------------ H008 +----------15 /----------16 \------------ H014 | | | +------------------------ H009 | | | \------------------------ H006 /-----------17 | +------------------------------------ H007 | | | +------------------------------------ H012 /----------18 | | | \------------------------------------ H011 | | | \------------------------------------------------- H013 | +------------------------------------------------------------- H010 | -----------20------------------------------------------------------------- H001 | | /------------ H003 +-----------------------------------------------19 | \------------ H005 | \------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_18 --> node_17 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H010 5 1 1.000 2 ==> 1 node_20 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 3 1 1.000 2 ==> 1 node_19 --> H003 4 1 1.000 2 ==> 1 node_19 --> H005 12 1 0.333 2 ==> 1 Tree number 59: Branch lengths and linkages for tree #59 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | /--------16---------15---------- H012 | | | | | \---------- H011 | | /---------18 \--------------------- H009 | | | | /---------- H008 /--------19 \-------------------17 | | \---------- H006 | | /---------20 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 60: Branch lengths and linkages for tree #60 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /---------------- H007 | | | /------16 /-------- H012 /-------18 | \------15 | +------17 \-------- H011 | | | | | \------------------------ H009 /------19 | | | \-------------------------------- H006 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 61: Branch lengths and linkages for tree #61 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------- H002 | | /--------- H007 | /-------15 | | \--------- H011 | /-------16 /-------18 | \------------------ H012 | | | | +--------17--------------------------- H008 | | | /-------19 | \--------------------------- H006 | | | | | \------------------------------------- H009 /-------20 | | | \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 62: Branch lengths and linkages for tree #62 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 3 2 3 H002 (1) 18 0 0 0 17 18 1 1 1 16 17 2 2 3 15 16 1 1 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 1 0 1 H008 (4) 17 1 1 1 H006 (13) 17 0 0 0 H009 (12) 18 1 1 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 | /------16 /-------18 | \---------------- H012 | | | | +------17------------------------ H008 | | | /------19 | \------------------------ H006 | | | | | \-------------------------------- H009 /------20 | | | \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 11 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 13 1 0.333 1 --> 0 node_17 --> H008 9 1 0.500 1 ==> 2 node_18 --> H009 12 1 0.333 2 ==> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 63: Branch lengths and linkages for tree #63 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 1 1 3 16 18 1 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 1 1 2 H012 (11) 15 1 1 2 H011 (14) 15 1 0 1 H009 (12) 16 2 1 2 17 18 2 1 2 H008 (4) 17 0 0 1 H006 (13) 17 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 | | /--------18 \------------------ H009 | | | | /--------- H008 /-------19 \----------------17 | | \--------- H006 | | /-------20 \------------------------------------- H014 | | /-------21 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------23 | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 node_18 --> node_16 9 1 0.500 2 --> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 node_15 --> H012 11 1 0.500 2 ==> 1 node_15 --> H011 13 1 0.333 0 --> 1 node_16 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> H006 9 1 0.500 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 64: Branch lengths and linkages for tree #64 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 0 0 3 19 20 2 2 3 18 19 3 1 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 2 H013 (6) 20 2 0 2 H010 (2) 22 1 1 1 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | +-------15--------- H012 /-------16 | | | \--------- H011 | | | +------------------ H009 /--------17 | | | \------------------ H006 | | /-------18 \--------------------------- H008 | | /-------19 \------------------------------------- H014 | | /-------20 \---------------------------------------------- H001 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 --------22 | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_20 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 65: Branch lengths and linkages for tree #65 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 21 root 0 0 0 19 21 2 2 3 18 19 3 3 4 17 18 2 1 2 16 17 1 1 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 16 1 1 1 H008 (4) 17 1 1 1 H014 (5) 18 0 0 0 H001 (7) 19 0 0 0 H010 (2) 21 1 1 1 H013 (6) 21 2 2 2 20 21 1 1 1 H003 (8) 20 1 1 1 H005 (10) 20 1 1 1 H000 (9)* 21 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------------------- H002 | | /---------- H007 | | +---------15---------- H012 /--------16 | | | \---------- H011 | | | +--------------------- H009 /---------17 | | | \--------------------- H006 | | /--------18 \------------------------------- H008 | | /---------19 \------------------------------------------ H014 | | | \---------------------------------------------------- H001 | +--------------------------------------------------------------- H010 | ---------21--------------------------------------------------------------- H013 | | /---------- H003 +---------------------------------------------------20 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_19 --> node_18 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_18 --> node_17 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_17 --> node_16 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H008 11 1 0.333 2 ==> 1 node_21 --> H010 5 1 1.000 2 ==> 1 node_21 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_21 --> node_20 3 1 1.000 2 ==> 1 node_20 --> H003 4 1 1.000 2 ==> 1 node_20 --> H005 12 1 0.333 2 ==> 1 Tree number 66: Branch lengths and linkages for tree #66 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H001 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 67: Branch lengths and linkages for tree #67 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 68: Branch lengths and linkages for tree #68 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 69: Branch lengths and linkages for tree #69 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 3 19 20 3 3 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 0 H010 (2) 22 1 1 1 H013 (6) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------ H002 | | /--------- H007 | | /-------16-------15--------- H012 | | | | | \--------- H011 /--------17 | | | \------------------ H009 | | /-------18 \--------------------------- H006 | | /-------19 \------------------------------------- H008 | | /-------20 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 70: Branch lengths and linkages for tree #70 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 0 0 3 20 21 2 2 3 19 20 3 1 4 18 19 2 1 3 17 18 1 1 1 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 2 2 3 H007 (3) 15 2 1 2 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H008 (4) 18 1 0 1 H014 (5) 19 0 0 0 H001 (7) 20 0 0 2 H013 (6) 21 2 0 2 H010 (2) 23 1 1 1 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /---------------- H002 | | /-------- H007 | | /------16------15-------- H012 | | | | | \-------- H011 /------17 | | | \---------------- H009 | | /-------18 \------------------------ H006 | | /------19 \-------------------------------- H008 | | /------20 \----------------------------------------- H014 | | /------21 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------23 | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_20 --> node_19 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_19 --> node_18 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> node_17 9 1 1.000 2 ==> 1 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 71: Branch lengths and linkages for tree #71 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H013 (6) 22 0 0 2 H001 (7) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_22 --> node_21 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 72: Branch lengths and linkages for tree #72 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H013 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 73: Branch lengths and linkages for tree #73 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H013 (6) 21 0 0 2 H001 (7) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H013 | | | \---------------------------------------------------------- H001 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H001 1 1 0.333 2 --> 1 2 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 74: Branch lengths and linkages for tree #74 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 0 0 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /----------------15 | \--------- H009 | /--------18 /--------- H008 | | /-------16 | | | \--------- H014 /-------19 \-------17 | | \------------------ H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 75: Branch lengths and linkages for tree #75 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 2 20 21 3 3 3 19 20 0 0 1 18 19 3 3 3 17 18 0 0 1 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 18 1 0 1 H012 (11) 19 1 0 1 H007 (3) 20 1 1 1 H011 (14) 20 1 1 1 H013 (6) 21 0 0 0 H010 (2) 23 1 1 1 H001 (7) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /--------- H002 /-------15 | \--------- H009 /-------17 | | /--------- H008 | \-------16 /--------18 \--------- H014 | | /-------19 \--------------------------- H006 | | | \------------------------------------- H012 /-------20 | +---------------------------------------------- H007 | | /-------21 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_21 --> node_20 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 76: Branch lengths and linkages for tree #76 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 15 17 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 16 17 1 1 1 H008 (4) 16 1 0 1 H014 (5) 16 1 1 2 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /---------- H002 /---------15 | \---------- H009 | | /---------- H008 /--------17---------16 | | \---------- H014 | | /---------18 \--------------------- H006 | | | \------------------------------- H012 /--------19 | +------------------------------------------ H007 | | /---------20 \------------------------------------------ H011 | | | \---------------------------------------------------- H013 | +--------------------------------------------------------------- H010 | ---------22--------------------------------------------------------------- H001 | | /---------- H003 +---------------------------------------------------21 | \---------- H005 | \--------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_17 --> node_16 9 1 0.500 1 ==> 2 node_16 --> H008 11 1 0.333 2 --> 1 node_16 --> H014 10 1 0.500 1 ==> 2 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 77: Branch lengths and linkages for tree #77 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /-------------------------------15 | \-------- H009 | | /-------- H007 | /------16 /------20 | \-------- H011 | | /------17 | | | \---------------- H012 | | /------18 /------21 | | \------------------------ H006 | | \-------19 | | \-------------------------------- H008 /------22 | | | \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 78: Branch lengths and linkages for tree #78 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 15 20 1 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 19 20 1 1 1 18 19 1 0 1 17 18 2 2 3 16 17 1 1 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 1 0 1 H006 (13) 18 0 0 0 H008 (4) 19 0 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /---------------------------15 | \------- H009 | | /------- H007 | /------16 /------20 | \------- H011 | | /-----17 | | | \--------------- H012 | | /-----18 /-----21 | | \---------------------- H006 | | \-----19 | | \----------------------------- H008 /-----22 | | | \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_15 9 1 0.500 2 --> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 9 1 0.500 2 --> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 11 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 13 1 0.333 1 --> 0 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 79: Branch lengths and linkages for tree #79 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 H007 (3) 16 2 0 2 15 16 0 0 1 H012 (11) 15 2 1 2 H011 (14) 15 0 0 1 H009 (12) 17 1 0 1 H006 (13) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /--------------- H007 | | | /-----16 /------- H012 /-----18 | \------15 | +-----17 \------- H011 | | | | | \---------------------- H009 /------19 | | | \----------------------------- H006 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_15 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H006 11 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 80: Branch lengths and linkages for tree #80 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H006 (13) 16 1 1 1 H009 (12) 17 1 0 1 H007 (3) 18 1 0 1 H012 (11) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H006 | | /-------18 \--------------------------- H009 | | | \------------------------------------- H007 /-------19 | +---------------------------------------------- H012 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H006 11 1 0.333 2 ==> 1 node_17 --> H009 12 1 0.333 2 --> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 81: Branch lengths and linkages for tree #81 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 22 root 0 0 0 20 22 2 2 2 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 0 0 1 H002 (1) 16 0 0 0 15 16 1 1 1 H008 (4) 15 1 1 1 H014 (5) 15 1 1 1 H009 (12) 16 1 1 1 H006 (13) 17 1 0 1 H012 (11) 18 1 0 1 H007 (3) 19 1 1 1 H011 (14) 19 1 1 1 H013 (6) 20 0 0 0 H010 (2) 22 1 1 1 H001 (7) 22 2 2 2 21 22 1 1 1 H003 (8) 21 1 1 1 H005 (10) 21 1 1 1 H000 (9)* 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------ H002 | | /--------- H008 /-------16-------15 | | \--------- H014 | | /--------17 \------------------ H009 | | /-------18 \--------------------------- H006 | | | \------------------------------------- H012 /-------19 | +---------------------------------------------- H007 | | /-------20 \---------------------------------------------- H011 | | | \------------------------------------------------------- H013 | +---------------------------------------------------------------- H010 | --------22---------------------------------------------------------------- H001 | | /--------- H003 +-----------------------------------------------------21 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 6 1 1.000 2 ==> 1 7 1 1.000 2 ==> 1 node_20 --> node_19 8 1 1.000 2 ==> 1 9 1 0.500 2 ==> 1 10 1 0.500 2 ==> 1 node_18 --> node_17 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 13 1 0.500 0 ==> 1 node_16 --> node_15 9 1 0.500 1 ==> 2 node_15 --> H008 11 1 0.333 2 ==> 1 node_15 --> H014 10 1 0.500 1 ==> 2 node_16 --> H009 12 1 0.333 2 ==> 1 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> H010 5 1 1.000 2 ==> 1 node_22 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 3 1 1.000 2 ==> 1 node_21 --> H003 4 1 1.000 2 ==> 1 node_21 --> H005 12 1 0.333 2 ==> 1 Tree number 82: Branch lengths and linkages for tree #82 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | /------18 /-------- H007 | | /------16 | | | \-------- H011 /-------19 \------17 | | \---------------- H012 | | /------20 \-------------------------------- H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 83: Branch lengths and linkages for tree #83 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 18 19 0 0 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 19 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /-------------15 | \------- H009 | /-----18 /------- H007 | | /------16 | | | \------- H011 /-----19 \-----17 | | \--------------- H012 | | /------20 \----------------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 84: Branch lengths and linkages for tree #84 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 2 2 3 21 22 3 3 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 0 H010 (2) 24 1 1 1 H013 (6) 24 2 2 2 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /----------------------15 | \-------- H009 | | /-------- H007 /-------19 /------16 | | | \-------- H011 | | /------17 | | | \---------------- H012 /------20 \------18 | | \------------------------ H006 | | /------21 \----------------------------------------- H008 | | /------22 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------24----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 85: Branch lengths and linkages for tree #85 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 25 root 0 0 0 23 25 0 0 3 22 23 2 2 3 21 22 3 1 4 20 21 2 1 3 19 20 1 1 1 15 19 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 18 19 0 0 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 20 1 0 1 H014 (5) 21 0 0 0 H001 (7) 22 0 0 2 H013 (6) 23 2 0 2 H010 (2) 25 1 1 1 24 25 1 1 1 H003 (8) 24 1 1 1 H005 (10) 24 1 1 1 H000 (9)* 25 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------- H002 /--------------------15 | \------- H009 | | /------- H007 /-----19 /------16 | | | \------- H011 | | /-----17 | | | \--------------- H012 /------20 \-----18 | | \---------------------- H006 | | /-----21 \------------------------------------ H008 | | /-----22 \-------------------------------------------- H014 | | /------23 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------25 | /------- H003 +---------------------------------------------------------24 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_22 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_22 --> node_21 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_21 --> node_20 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> node_19 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_25 --> H010 5 1 1.000 2 ==> 1 node_25 --> node_24 3 1 1.000 2 ==> 1 node_24 --> H003 4 1 1.000 2 ==> 1 node_24 --> H005 12 1 0.333 2 ==> 1 Tree number 86: Branch lengths and linkages for tree #86 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /----------------------------- H002 | | /------- H007 | /------15 | | \------- H011 /-----18 /-----16 | | | \--------------- H012 | +-----17 | | \---------------------- H006 /------19 | | | \----------------------------- H009 | | /-----20 \------------------------------------ H008 | | /-----21 \-------------------------------------------- H014 | | /------22 \--------------------------------------------------- H001 | | | \---------------------------------------------------------- H013 | +------------------------------------------------------------------ H010 ------24 | /------- H003 +---------------------------------------------------------23 | \------- H005 | \------------------------------------------------------------------ H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 87: Branch lengths and linkages for tree #87 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /--------- H002 /----------------15 | \--------- H009 | | /--------- H007 | /-------16 /--------18 | \--------- H011 | +-------17 | | \------------------ H012 /-------19 | | | \--------------------------- H006 | | /-------20 \------------------------------------- H008 | | /-------21 \---------------------------------------------- H014 | | | \------------------------------------------------------- H001 | +---------------------------------------------------------------- H010 | --------23---------------------------------------------------------------- H013 | | /--------- H003 +-----------------------------------------------------22 | \--------- H005 | \---------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 Tree number 88: Branch lengths and linkages for tree #88 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 24 root 0 0 0 22 24 0 0 3 21 22 2 2 3 20 21 3 1 4 19 20 2 1 3 18 19 1 1 1 15 18 0 0 1 H002 (1) 15 0 0 0 H009 (12) 15 1 1 1 17 18 2 2 3 16 17 0 0 1 H007 (3) 16 2 1 2 H011 (14) 16 0 0 1 H012 (11) 17 2 0 2 H006 (13) 18 1 0 1 H008 (4) 19 1 0 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 2 H013 (6) 22 2 0 2 H010 (2) 24 1 1 1 23 24 1 1 1 H003 (8) 23 1 1 1 H005 (10) 23 1 1 1 H000 (9)* 24 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------- H002 /--------------15 | \-------- H009 | | /-------- H007 | /------16 /------18 | \-------- H011 | +------17 | | \---------------- H012 /-------19 | | | \------------------------ H006 | | /------20 \-------------------------------- H008 | | /------21 \----------------------------------------- H014 | | /------22 \------------------------------------------------- H001 | | | \--------------------------------------------------------- H013 | +----------------------------------------------------------------- H010 -------24 | /-------- H003 +-------------------------------------------------------23 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_15 --> H009 12 1 0.333 2 ==> 1 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_17 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_18 --> H006 11 1 0.333 2 --> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> H013 6 1 0.500 2 --> 1 7 1 0.500 2 --> 1 node_24 --> H010 5 1 1.000 2 ==> 1 node_24 --> node_23 3 1 1.000 2 ==> 1 node_23 --> H003 4 1 1.000 2 ==> 1 node_23 --> H005 12 1 0.333 2 ==> 1 Tree number 89: Branch lengths and linkages for tree #89 Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- 23 root 0 0 0 21 23 2 2 3 20 21 3 3 4 19 20 2 1 2 18 19 1 1 1 H002 (1) 18 0 0 0 17 18 0 0 1 16 17 2 2 3 15 16 0 0 1 H007 (3) 15 2 1 2 H011 (14) 15 0 0 1 H012 (11) 16 2 0 2 H006 (13) 17 1 0 1 H009 (12) 18 1 1 1 H008 (4) 19 1 1 1 H014 (5) 20 0 0 0 H001 (7) 21 0 0 0 H010 (2) 23 1 1 1 H013 (6) 23 2 2 2 22 23 1 1 1 H003 (8) 22 1 1 1 H005 (10) 22 1 1 1 H000 (9)* 23 0 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /-------------------------------- H002 | | /-------- H007 | /------15 | | \-------- H011 /-------18 /------16 | | | \---------------- H012 | +------17 | | \------------------------ H006 /------19 | | | \-------------------------------- H009 | | /------20 \----------------------------------------- H008 | | /------21 \------------------------------------------------- H014 | | | \--------------------------------------------------------- H001 | +----------------------------------------------------------------- H010 | -------23----------------------------------------------------------------- H013 | | /-------- H003 +-------------------------------------------------------22 | \-------- H005 | \----------------------------------------------------------------- H000 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_21 --> node_20 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 8 1 1.000 2 ==> 1 node_20 --> node_19 10 1 1.000 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> node_18 9 1 1.000 2 ==> 1 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_16 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_17 --> H006 11 1 0.333 2 --> 1 node_18 --> H009 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_23 --> H010 5 1 1.000 2 ==> 1 node_23 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_23 --> node_22 3 1 1.000 2 ==> 1 node_22 --> H003 4 1 1.000 2 ==> 1 node_22 --> H005 12 1 0.333 2 ==> 1 ALTree-v1.3.2/test/paup/outgr_present/localisation/test.tree000066400000000000000000000252641412112337500241740ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Tue Jan 10 21:29:10 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_present/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90130 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005)); tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005)); tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005)); tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005)); tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005)); tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005)); tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005)); tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005)); tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005)); tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005)); tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005)); tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005)); tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005)); tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005)); tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005)); tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005)); tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005)); tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005)); tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005)); tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005)); tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005)); tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005)); tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005)); End; ALTree-v1.3.2/test/paup/unrooted_absent/000077500000000000000000000000001412112337500201355ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/unrooted_absent/association/000077500000000000000000000000001412112337500224515ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/unrooted_absent/association/1_caco.asso000066400000000000000000000041451412112337500244710ustar00rootroot00000000000000 /----* H010 case/control:7/5 | Site: 5 Sens: 2-->1 |----* H001 case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 -----* 16 case/control:102/74 | | [0] ddl=3 chi2=1.41 p_value_chi2=0.704 | [1] ddl=5 chi2=3.37 p_value_chi2=0.64 | [2] ddl=8 chi2=16.00 p_value_chi2=0.035 | [3] ddl=11 chi2=17.69 p_value_chi2=0.095 | [4] ddl=12 chi2=18.05 p_value_chi2=0.1 | /----* H003 case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 15 case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 case/control:7/7 | Site: 12 Sens: 2-->1 | /----* H013 case/control:2/4 \----* 17 case/control:72/47 | Site: 6 Sens: 2-->1 | Site: 7 Sens: 2-->1 | /----* H007 case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 case/control:1/4 | | Site: 11 Sens: 2-->1 \----* 18 case/control:70/43 | Site: 8 Sens: 2-->1 | Site: 9 Sens: 2-->1 | Site: 10 Sens: 2-->1 |----* H011 case/control:5/1 | /----* H002 case/control:8/6 | | /----* H008 case/control:9/2 | | | Site: 11 Sens: 2-->1 | |----* 19 case/control:13/4 | | | Site: 9 Sens: 1-->2 | | \----* H014 case/control:4/2 | | Site: 10 Sens: 1-->2 \----* 20 case/control:57/25 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 |----* H009 case/control:8/2 | Site: 12 Sens: 2-->1 \----* H006 case/control:28/13 Site: 11 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 ALTree-v1.3.2/test/paup/unrooted_absent/association/caco.paup000066400000000000000000000020161412112337500242440ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 [H000 222222222222] H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 H000 222222222222 ; end; begin assumptions; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/unrooted_absent/association/nb_cas_control.txt000066400000000000000000000003031412112337500261730ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/unrooted_absent/association/run_altree000077500000000000000000000005651412112337500245450ustar00rootroot00000000000000#!/bin/sh -x # To run paup paup caco.paup # To perform the association test # The outgroup is specified (option --outgroup) because the tree must be # rooted for the test but it is removed before the tree analysis ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ --outgroup H000 --remove-outgroup -p paup -r 1 --tree-to-analyse 1\ -o 1_caco.asso ALTree-v1.3.2/test/paup/unrooted_absent/association/test.res.log000066400000000000000000016220501412112337500247310ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Tue Jan 10 20:34:54 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 2 (rooted using default outgroup) Branch lengths and linkages for tree #2 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 3 (rooted using default outgroup) Branch lengths and linkages for tree #3 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H014 +------------------------------------------20 | \----------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 4 (rooted using default outgroup) Branch lengths and linkages for tree #4 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------21 /---------- H008 | +---------------------------------------------------20 | | \---------- H014 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 5 (rooted using default outgroup) Branch lengths and linkages for tree #5 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------22 /---------- H008 | | /---------20 | | | \---------- H014 | \----------------------------------------21 | \--------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 6 (rooted using default outgroup) Branch lengths and linkages for tree #6 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 1 0 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------21 | | | \------------ H011 | | | | /------------ H008 | \-----------------------------------------------20 | \------------ H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> node_20 9 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 7 (rooted using default outgroup) Branch lengths and linkages for tree #7 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 2 2 2 17 19 2 2 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 21 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------20 \------------ H011 | | | +------------------------------------------------------------- H008 | | | \------------------------------------------------------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 8 (rooted using default outgroup) Branch lengths and linkages for tree #8 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 2 19 20 2 2 2 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 1 0 1 H008 (4) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------19 | | | /--------- H007 | | | | | | \--------------------------18--------- H012 | /-------20 | | | | \--------- H011 | | | | /-------21 \---------------------------------------------- H014 | | | +-------22 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 9 (rooted using default outgroup) Branch lengths and linkages for tree #9 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H006 (12) 22 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H014 \--------------------------------------------------22 \--------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 --> 1 Tree number 10 (rooted using default outgroup) Branch lengths and linkages for tree #10 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H006 +------------------------------------------20 | \----------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 11 (rooted using default outgroup) Branch lengths and linkages for tree #11 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------18 | | +------------------------------------- H007 | | | | /-------19 \------------------------------------- H011 | | | | /-------20 \---------------------------------------------- H012 | | | | | \------------------------------------------------------- H006 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 12 (rooted using default outgroup) Branch lengths and linkages for tree #12 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 20 2 2 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_20 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 13 (rooted using default outgroup) Branch lengths and linkages for tree #13 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 14 (rooted using default outgroup) Branch lengths and linkages for tree #14 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 15 (rooted using default outgroup) Branch lengths and linkages for tree #15 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 16 (rooted using default outgroup) Branch lengths and linkages for tree #16 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 17 (rooted using default outgroup) Branch lengths and linkages for tree #17 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 18 (rooted using default outgroup) Branch lengths and linkages for tree #18 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 0 0 1 19 20 2 2 2 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 1 0 1 H008 (4) 21 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------21 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 19 (rooted using default outgroup) Branch lengths and linkages for tree #19 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 20 (rooted using default outgroup) Branch lengths and linkages for tree #20 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 21 (rooted using default outgroup) Branch lengths and linkages for tree #21 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 22 (rooted using default outgroup) Branch lengths and linkages for tree #22 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 23 (rooted using default outgroup) Branch lengths and linkages for tree #23 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 2 22 23 0 0 1 H007 (3) 22 1 1 1 H011 (13) 22 0 0 0 H012 (10) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H001 | | | | /------19 \-------------------------------- H013 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_23 --> H012 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 24 (rooted using default outgroup) Branch lengths and linkages for tree #24 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 25 (rooted using default outgroup) Branch lengths and linkages for tree #25 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 23 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------22 \------------ H011 | | | | /------------ H008 | | /----------20 | | | \------------ H006 | \-----------------------------------21 | \------------------------ H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 26 (rooted using default outgroup) Branch lengths and linkages for tree #26 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 2 19 20 2 2 2 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------20 | | | \------------ H011 | | | \------------------------------------------------------------- H014 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 27 (rooted using default outgroup) Branch lengths and linkages for tree #27 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 2 18 20 2 2 2 17 18 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H007 | | | | \-----------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 28 (rooted using default outgroup) Branch lengths and linkages for tree #28 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 29 (rooted using default outgroup) Branch lengths and linkages for tree #29 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 1 19 20 2 2 2 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 0 0 0 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H014 (5) 22 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | +---------------- H001 | | | /------16 /-------- H003 | | +------15 | | | \-------- H005 | /------17 | | | | \---------------- H000 | | | | | \------------------------ H013 23 /-------18 | | +-------------------------------- H007 | | | | /------19 \-------------------------------- H011 | | | | /------20 \----------------------------------------- H012 | | | | /------21 \------------------------------------------------- H006 | | | +------22 \--------------------------------------------------------- H008 | | | \----------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 30 (rooted using default outgroup) Branch lengths and linkages for tree #30 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H012 | | | \--------------------------------------------------------------- H006 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 31 (rooted using default outgroup) Branch lengths and linkages for tree #31 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 20 21 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 22 2 2 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 32 (rooted using default outgroup) Branch lengths and linkages for tree #32 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 33 (rooted using default outgroup) Branch lengths and linkages for tree #33 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 34 (rooted using default outgroup) Branch lengths and linkages for tree #34 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H013 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H001 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 35 (rooted using default outgroup) Branch lengths and linkages for tree #35 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 36 (rooted using default outgroup) Branch lengths and linkages for tree #36 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | | | \------------ H011 +----------21 | | /------------ H008 | +-----------------------------------------------20 | | \------------ H006 | | | \------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 37 (rooted using default outgroup) Branch lengths and linkages for tree #37 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 2 2 2 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | | | \------------------------------------------------- H014 | | +----------19------------------------------------------------------------- H007 | | | +------------------------------------------------------------- H012 | | | \------------------------------------------------------------- H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 38 (rooted using default outgroup) Branch lengths and linkages for tree #38 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 22 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------21 | +---------------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 39 (rooted using default outgroup) Branch lengths and linkages for tree #39 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 2 2 2 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H007 (3) 20 1 0 1 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H012 | | | | /-------20 \---------------------------------------------- H011 | | | +-------21 \------------------------------------------------------- H007 | | | \---------------------------------------------------------------- H009 | | /--------- H008 \--------------------------------------------------------------22 \--------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_20 --> H007 12 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 40 (rooted using default outgroup) Branch lengths and linkages for tree #40 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 41 (rooted using default outgroup) Branch lengths and linkages for tree #41 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 42 (rooted using default outgroup) Branch lengths and linkages for tree #42 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 43 (rooted using default outgroup) Branch lengths and linkages for tree #43 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 2 19 20 2 2 2 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------22 \---------------------------------------------------- H014 | | | | /---------- H008 | \---------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 44 (rooted using default outgroup) Branch lengths and linkages for tree #44 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H014 (5) 22 2 2 2 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 Tree number 45 (rooted using default outgroup) Branch lengths and linkages for tree #45 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H014 (5) 22 2 1 2 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H006 \--------------------------------------------------22 \--------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 Tree number 46 (rooted using default outgroup) Branch lengths and linkages for tree #46 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 47 (rooted using default outgroup) Branch lengths and linkages for tree #47 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 2 2 2 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 0 0 0 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 21 2 2 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 21 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------20 | +--------------------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 48 (rooted using default outgroup) Branch lengths and linkages for tree #48 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 49 (rooted using default outgroup) Branch lengths and linkages for tree #49 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 50 (rooted using default outgroup) Branch lengths and linkages for tree #50 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 51 (rooted using default outgroup) Branch lengths and linkages for tree #51 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 2 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 2 20 21 2 0 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H007 | | | | \---------------------------------------------------20---------- H012 | | | \---------- H011 | | /---------- H008 +-------------------------------------------------------------22 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 52 (rooted using default outgroup) Branch lengths and linkages for tree #52 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 53 (rooted using default outgroup) Branch lengths and linkages for tree #53 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 54 (rooted using default outgroup) Branch lengths and linkages for tree #54 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | 25 /-------19 \------------------------------------- H001 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 55 (rooted using default outgroup) Branch lengths and linkages for tree #55 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 56 (rooted using default outgroup) Branch lengths and linkages for tree #56 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 57 (rooted using default outgroup) Branch lengths and linkages for tree #57 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 58 (rooted using default outgroup) Branch lengths and linkages for tree #58 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 59 (rooted using default outgroup) Branch lengths and linkages for tree #59 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 60 (rooted using default outgroup) Branch lengths and linkages for tree #60 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 61 (rooted using default outgroup) Branch lengths and linkages for tree #61 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 62 (rooted using default outgroup) Branch lengths and linkages for tree #62 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 63 (rooted using default outgroup) Branch lengths and linkages for tree #63 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 64 (rooted using default outgroup) Branch lengths and linkages for tree #64 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | 25 /---------19 \------------------------------------------ H013 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 65 (rooted using default outgroup) Branch lengths and linkages for tree #65 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 23 24 1 1 1 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 66 (rooted using default outgroup) Branch lengths and linkages for tree #66 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 67 (rooted using default outgroup) Branch lengths and linkages for tree #67 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 22 23 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 68 (rooted using default outgroup) Branch lengths and linkages for tree #68 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 69 (rooted using default outgroup) Branch lengths and linkages for tree #69 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | 25 /-------19 \------------------------------------- H013 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 70 (rooted using default outgroup) Branch lengths and linkages for tree #70 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 71 (rooted using default outgroup) Branch lengths and linkages for tree #71 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 72 (rooted using default outgroup) Branch lengths and linkages for tree #72 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 2 22 23 0 0 1 H007 (3) 22 1 1 1 H011 (13) 22 0 0 0 H012 (10) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H013 | | | | /------19 \-------------------------------- H001 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_23 --> H012 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 73 (rooted using default outgroup) Branch lengths and linkages for tree #73 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 2 H007 (3) 20 1 0 1 19 20 0 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 74 (rooted using default outgroup) Branch lengths and linkages for tree #74 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 75 (rooted using default outgroup) Branch lengths and linkages for tree #75 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 76 (rooted using default outgroup) Branch lengths and linkages for tree #76 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 77 (rooted using default outgroup) Branch lengths and linkages for tree #77 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H013 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 78 (rooted using default outgroup) Branch lengths and linkages for tree #78 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H001 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 79 (rooted using default outgroup) Branch lengths and linkages for tree #79 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 80 (rooted using default outgroup) Branch lengths and linkages for tree #80 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 81 (rooted using default outgroup) Branch lengths and linkages for tree #81 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 82 (rooted using default outgroup) Branch lengths and linkages for tree #82 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | 25 /---------19 \------------------------------------------ H001 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 83 (rooted using default outgroup) Branch lengths and linkages for tree #83 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 2 H007 (3) 20 1 0 1 19 20 0 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 84 (rooted using default outgroup) Branch lengths and linkages for tree #84 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 85 (rooted using default outgroup) Branch lengths and linkages for tree #85 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 86 (rooted using default outgroup) Branch lengths and linkages for tree #86 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 23 24 1 1 1 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 87 (rooted using default outgroup) Branch lengths and linkages for tree #87 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 22 23 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 88 (rooted using default outgroup) Branch lengths and linkages for tree #88 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 89 (rooted using default outgroup) Branch lengths and linkages for tree #89 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 ALTree-v1.3.2/test/paup/unrooted_absent/association/test.tree000066400000000000000000000254541412112337500243230ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Tue Jan 10 20:34:54 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/non_enracine_absent/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90406 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H014),H009,H006)); tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H014),H006),H009)); tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H014),H006),H009)); tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),((H008,H014),H006)),H009)); tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H014)),H009,H006)); tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H008,H014),H009,H006)); tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H006),H009)); tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H014),H006))); tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H006),H014),H009)); tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014)),H009)); tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H006),H014,H009)); tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_14 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_15 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_16 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_17 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_18 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H009,H006)); tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_21 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_22 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_24 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_25 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),((H008,H006),H014)),H009)); tree PAUP_26 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006),H009)); tree PAUP_27 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_28 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_29 = [&U] (H002,((((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),H008),H014),H009)); tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014),H009)); tree PAUP_31 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H006)),H014,H009)); tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),(H008,H006)),H009)); tree PAUP_33 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_34 = [&U] (H002,(((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_35 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H014),H006)); tree PAUP_36 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H006),H014),H009)); tree PAUP_37 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H007,H012,H011),(H008,H006),H009)); tree PAUP_38 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),H008,H006),H009)); tree PAUP_39 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H012,H011),H007),H009),(H008,H006))); tree PAUP_40 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_41 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_42 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_43 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006)),H009)); tree PAUP_44 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H006),H014)); tree PAUP_45 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H006),H014))); tree PAUP_46 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H008,H006),H014,H009)); tree PAUP_48 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_49 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_50 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_51 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_52 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_53 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_54 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_57 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_58 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_59 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_60 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_61 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_62 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_63 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_64 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_65 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_66 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_67 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_68 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_69 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_70 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_71 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_72 = [&U] (H002,((((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_73 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_74 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_75 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_76 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_77 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_78 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_79 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_81 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_82 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_83 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_84 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_85 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_86 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_87 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_88 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_89 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009)); End; ALTree-v1.3.2/test/paup/unrooted_absent/localisation/000077500000000000000000000000001412112337500226165ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/unrooted_absent/localisation/caco.loc000066400000000000000000000021401412112337500242170ustar00rootroot00000000000000Localisation method using S-character Results: site number 7 sens 1-->2 V_i = 1.69733684958301 site number 6 sens 1-->2 V_i = 1.69733684958301 site number 12 sens 1-->2 V_i = 0.445435403187374 site number 2 sens 1-->2 V_i = 0 site number 8 sens 1-->2 V_i = 0 site number 1 sens 1-->2 V_i = 0 site number 3 sens 2-->1 V_i = 0 site number 4 sens 2-->1 V_i = 0 site number 10 sens 1-->2 V_i = 0 site number 9 sens 1-->2 V_i = 0 site number 5 sens 2-->1 V_i = 0 site number 12 sens 2-->1 V_i = 0 site number 6 sens 2-->1 V_i = -0.462910049886276 site number 11 sens 2-->1 V_i = -0.462910049886276 site number 11 sens 1-->2 V_i = -0.462910049886276 site number 3 sens 1-->2 V_i = -0.462910049886276 site number 7 sens 2-->1 V_i = -0.462910049886276 site number 8 sens 2-->1 V_i = -0.462910049886276 site number 10 sens 2-->1 V_i = -0.462910049886276 site number 4 sens 1-->2 V_i = -0.462910049886276 site number 5 sens 1-->2 V_i = -0.462910049886276 site number 1 sens 2-->1 V_i = -0.654653670707977 site number 9 sens 2-->1 V_i = -0.654653670707977 site number 2 sens 2-->1 V_i = -0.654653670707977 ALTree-v1.3.2/test/paup/unrooted_absent/localisation/caco.paup000066400000000000000000000017741412112337500244230ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=13 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 [H000 222222222222] ; end; begin assumptions; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/unrooted_absent/localisation/et_caco.paup000066400000000000000000000020321412112337500250770ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=13 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 2222211222220 H001 112222222222? H003 221122222222? H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 ; end; begin assumptions; end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/unrooted_absent/localisation/nb_cas_control.txt000066400000000000000000000003031412112337500263400ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 ALTree-v1.3.2/test/paup/unrooted_absent/localisation/run-prog000077500000000000000000000007131412112337500243160ustar00rootroot00000000000000#!/bin/sh -x # To obtain the paup input file containing the character S ../../../../altree-add-S -i caco.paup -j nb_cas_control.txt \ -o et_caco.paup -e 1 -t SNP -p 0.58 # To run paup paup et_caco.paup # To perform the localisation analysis on the 89 equiparsimonious trees ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc ALTree-v1.3.2/test/paup/unrooted_absent/localisation/test.res.log000066400000000000000000016107351412112337500251050ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Fri Jan 13 11:19:32 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 19 0 0 0 17 19 3 3 3 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 18 19 1 1 1 H008 (4) 18 1 1 1 H014 (5) 18 1 1 1 H009 (11) 19 1 1 1 H006 (12) 19 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | | | \-------------------------------------------- H013 | | 19------------17---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------18 | \--------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> node_18 9 1 0.500 1 ==> 2 node_18 --> H008 11 1 0.333 2 ==> 1 node_18 --> H014 10 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 node_19 --> H006 11 1 0.333 2 ==> 1 Tree number 2 (rooted using default outgroup) Branch lengths and linkages for tree #2 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 21-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------20---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 3 (rooted using default outgroup) Branch lengths and linkages for tree #3 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 17 20 3 3 3 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 19 20 0 0 1 18 19 1 1 1 H008 (4) 18 1 0 1 H014 (5) 18 1 1 2 H006 (12) 19 1 0 1 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | | | \-------------------------------------------- H013 | | 20------------17---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------18 | | \--------------- H014 +------------------------------------------19 | \----------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> node_18 9 1 0.500 1 ==> 2 node_18 --> H008 11 1 0.333 2 --> 1 node_18 --> H014 10 1 0.500 1 ==> 2 node_19 --> H006 11 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 4 (rooted using default outgroup) Branch lengths and linkages for tree #4 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 0 0 1 18 20 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------20 /---------- H008 | +---------------------------------------------------19 | | \---------- H014 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 5 (rooted using default outgroup) Branch lengths and linkages for tree #5 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 18 21 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 22 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------21 /---------- H008 | | /---------19 | | | \---------- H014 | \----------------------------------------20 | \--------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 6 (rooted using default outgroup) Branch lengths and linkages for tree #6 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 0 0 1 18 20 3 3 3 16 18 3 2 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 19 20 1 0 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 21 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 +----------20 | | | \------------ H011 | | | | /------------ H008 | \-----------------------------------------------19 | \------------ H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 9 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 7 (rooted using default outgroup) Branch lengths and linkages for tree #7 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 19 20 1 1 1 18 19 3 3 3 16 18 2 2 2 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 1 1 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 20 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 | | | +----------19 \------------ H011 | | | +------------------------------------------------------------- H008 | | | \------------------------------------------------------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 8 (rooted using default outgroup) Branch lengths and linkages for tree #8 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 20 21 1 1 1 19 20 0 0 3 18 19 3 2 3 16 18 2 1 2 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 1 1 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 19 1 0 1 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | | \--------------------------- H013 | /-------18 22 | | /--------- H007 | | | | | | \--------------------------17--------- H012 | /-------19 | | | | \--------- H011 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 10 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 9 (rooted using default outgroup) Branch lengths and linkages for tree #9 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H007 (3) 18 1 0 1 H009 (11) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 22 | +------------------------------------------ H012 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------20 | | \---------- H014 \--------------------------------------------------21 \--------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H009 12 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 Tree number 10 (rooted using default outgroup) Branch lengths and linkages for tree #10 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 17 20 3 3 3 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 19 20 0 0 1 18 19 1 1 1 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 H014 (5) 19 2 1 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | | | \-------------------------------------------- H013 | | 20------------17---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------18 | | \--------------- H006 +------------------------------------------19 | \----------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.333 1 --> 2 node_19 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 11 (rooted using default outgroup) Branch lengths and linkages for tree #11 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 H006 (12) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | | \--------------------------- H013 | /-------17 22 | +------------------------------------- H007 | | | | /-------18 \------------------------------------- H011 | | | | /-------19 \---------------------------------------------- H012 | | | | | \------------------------------------------------------- H006 +-------21 | | /--------- H008 | \-----------------------------------------------------20 | \--------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 12 (rooted using default outgroup) Branch lengths and linkages for tree #12 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 19 0 0 0 17 19 3 3 3 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 18 19 1 1 1 H008 (4) 18 1 1 1 H006 (12) 18 0 0 0 H014 (5) 19 2 2 2 H009 (11) 19 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | | | \-------------------------------------------- H013 | | 19------------17---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------18 | \--------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 node_18 --> H008 9 1 0.333 1 ==> 2 node_19 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_19 --> H009 12 1 0.333 2 ==> 1 Tree number 13 (rooted using default outgroup) Branch lengths and linkages for tree #13 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 21-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------20---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 14 (rooted using default outgroup) Branch lengths and linkages for tree #14 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | | /-------18 \------------------------------------- H013 | | | 22 /-------19 \---------------------------------------------- H014 | | | +-------20 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------21--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 15 (rooted using default outgroup) Branch lengths and linkages for tree #15 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 19 21 2 2 3 H007 (3) 19 1 1 2 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 20 21 2 1 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | +----------18 \------------------------------------------------- H013 | | 21 \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 16 (rooted using default outgroup) Branch lengths and linkages for tree #16 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 3 18 20 2 2 2 17 18 1 1 3 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 2 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 22 | \---------------------------------------------------- H014 +--------20 | | /---------- H007 | | | | \---------------------------------------------------19---------- H012 | | | \---------- H011 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 13 1 0.500 1 ==> 0 node_20 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> node_19 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 17 (rooted using default outgroup) Branch lengths and linkages for tree #17 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 3 3 3 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 2 2 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 19 20 1 1 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 20 | \------------------------------------------------- H014 | | +----------18------------------------------------------------------------- H007 | | | +------------------------------------------------------------- H012 | | | \------------------------------------------------------------- H011 | | /------------ H008 +-----------------------------------------------------------19 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 18 (rooted using default outgroup) Branch lengths and linkages for tree #18 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | 21 /---------18 \------------------------------------------ H014 | | | +--------19 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------20---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 19 (rooted using default outgroup) Branch lengths and linkages for tree #19 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 3 H007 (3) 21 1 1 2 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 22 | \---------------------------------------------------- H014 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 20 (rooted using default outgroup) Branch lengths and linkages for tree #20 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | | /-------18 \------------------------------------- H001 | | | 22 /-------19 \---------------------------------------------- H014 | | | +-------20 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------21--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 21 (rooted using default outgroup) Branch lengths and linkages for tree #21 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 23-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------20 | | \---------- H011 | /--------21 | | \--------------------- H012 +----------------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 22 (rooted using default outgroup) Branch lengths and linkages for tree #22 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | 21 /---------18 \------------------------------------------ H014 | | | +--------19 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------20---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 23 (rooted using default outgroup) Branch lengths and linkages for tree #23 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | /------15 /-------- H003 | | \------14 | /------16 \-------- H005 | | | | /-------17 \------------------------ H001 | | | | /------18 \-------------------------------- H013 | | | 24 /------19 \----------------------------------------- H014 | | | | /------20 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------23 /-------- H007 | | /------21 | | | \-------- H011 | \-----------------------------------------------22 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 24 (rooted using default outgroup) Branch lengths and linkages for tree #24 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | | /-------18 \------------------------------------- H013 | | | 24 /-------19 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------20 | | | \--------- H011 | | /-------21 | | | \------------------ H012 | \-----------------------------------22 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 25 (rooted using default outgroup) Branch lengths and linkages for tree #25 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | | /-------18 \------------------------------------- H013 | | | 23 /-------19 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------22 /-------20 | | | \--------- H011 | +--------------------------------------------21 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 26 (rooted using default outgroup) Branch lengths and linkages for tree #26 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | | /-------18 \------------------------------------- H013 24 | | | /-------19 \---------------------------------------------- H014 | | | +-------20 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------22 /--------- H012 | | \-------21 \--------------------------------------------23 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 27 (rooted using default outgroup) Branch lengths and linkages for tree #27 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H007 (3) 18 1 0 1 H009 (11) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H012 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------20 | \---------- H014 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H009 12 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 28 (rooted using default outgroup) Branch lengths and linkages for tree #28 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H007 (3) 18 1 0 1 H009 (11) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 21 2 2 2 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H012 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------20 | \---------- H006 | \------------------------------------------------------------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H009 12 1 0.333 2 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 Tree number 29 (rooted using default outgroup) Branch lengths and linkages for tree #29 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H007 (3) 18 1 0 1 H009 (11) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 22 | +------------------------------------------ H012 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------20 | | \---------- H006 \--------------------------------------------------21 \--------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H007 12 1 0.333 2 --> 1 node_19 --> H009 12 1 0.333 2 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 Tree number 30 (rooted using default outgroup) Branch lengths and linkages for tree #30 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 23 | | | /---------18 \------------------------------------------ H014 | | | +--------19 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------21 /---------- H012 | | \---------20 \----------------------------------------22 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 Tree number 31 (rooted using default outgroup) Branch lengths and linkages for tree #31 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 23 | | | /---------18 \------------------------------------------ H014 | | | +--------19 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------21 /---------- H012 | | \---------20 \----------------------------------------22 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 Tree number 32 (rooted using default outgroup) Branch lengths and linkages for tree #32 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 2 2 2 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | 22 | \------------------------------------- H014 | /-------18 | | +---------------------------------------------- H012 | | | | /-------19 \---------------------------------------------- H011 | | | +-------20 \------------------------------------------------------- H007 | | | \---------------------------------------------------------------- H009 | | /--------- H008 \--------------------------------------------------------------21 \--------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 Tree number 33 (rooted using default outgroup) Branch lengths and linkages for tree #33 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 20 21 1 1 1 19 20 0 0 1 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 0 0 0 H006 (12) 19 0 0 0 H008 (4) 20 1 0 1 H014 (5) 21 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | +---------------- H001 | /------15 | | | /-------- H003 | | \------14 | /------16 \-------- H005 | | | | | \------------------------ H013 | /-------17 22 | +-------------------------------- H007 | | | | /------18 \-------------------------------- H011 | | | | /------19 \----------------------------------------- H012 | | | | /------20 \------------------------------------------------- H006 | | | +------21 \--------------------------------------------------------- H008 | | | \----------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 11 1 0.500 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 34 (rooted using default outgroup) Branch lengths and linkages for tree #34 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 18 19 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 H006 (12) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | +--------19 \---------------------------------------------------- H012 | | | \--------------------------------------------------------------- H006 | | /---------- H008 +-------------------------------------------------------------20 | \---------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 35 (rooted using default outgroup) Branch lengths and linkages for tree #35 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | 23 /-------18 \------------------------------------- H014 | | | | /-------19 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------22 /--------- H007 | | /-------20 | | | \--------- H011 | \--------------------------------------------21 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 36 (rooted using default outgroup) Branch lengths and linkages for tree #36 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 0 0 1 18 20 3 3 3 17 18 0 0 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 1 0 1 19 20 1 0 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 21 2 2 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 21 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_18 --> H012 11 1 0.500 2 --> 1 node_20 --> node_19 11 1 0.500 2 --> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 37 (rooted using default outgroup) Branch lengths and linkages for tree #37 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 18 19 0 0 1 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 2 2 2 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 20 21 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | 22 | \------------------------------------- H014 | /-------18 | | +---------------------------------------------- H007 | | | | /-------19 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------21 | | /--------- H008 | \-----------------------------------------------------20 | \--------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 38 (rooted using default outgroup) Branch lengths and linkages for tree #38 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 0 0 1 18 19 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 H006 (12) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H013 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H001 | | | 23 /-------18 \------------------------------------- H014 | | | | /-------19 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------22 /--------- H007 | | /-------20 | | | \--------- H011 | \--------------------------------------------21 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_19 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 39 (rooted using default outgroup) Branch lengths and linkages for tree #39 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 0 0 2 18 19 3 2 3 16 18 2 1 2 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 1 1 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 19 1 0 1 H008 (4) 20 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------18 21 | | /---------- H007 | | | | | | \------------------------------17---------- H012 | /---------19 | | | | \---------- H011 | | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> node_17 9 1 0.500 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 10 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 40 (rooted using default outgroup) Branch lengths and linkages for tree #40 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 3 18 19 3 2 3 16 18 3 1 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 19 2 0 2 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 21 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 +----------19 | | | \------------ H011 | | | \------------------------------------------------------------- H014 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 41 (rooted using default outgroup) Branch lengths and linkages for tree #41 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 18 21 3 3 3 16 18 3 2 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 22 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 | | | +----------21 \------------ H011 | | | | /------------ H008 | | /----------19 | | | \------------ H006 | \-----------------------------------20 | \------------------------ H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 42 (rooted using default outgroup) Branch lengths and linkages for tree #42 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 0 0 1 18 20 3 3 3 16 18 3 2 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 1 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | | \------------------------------------ H013 | /----------18 21 | | /------------ H007 | | | | | | \-----------------------------------17------------ H012 | | | | | \------------ H011 +----------20 | | /------------ H008 | +-----------------------------------------------19 | | \------------ H006 | | | \------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 43 (rooted using default outgroup) Branch lengths and linkages for tree #43 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 3 17 19 2 2 2 16 17 3 1 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 0 0 2 18 19 2 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 21 | \------------------------------------------------- H014 +----------19 | | /------------ H007 | | | | \-----------------------------------------------18------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 13 1 0.500 1 ==> 0 node_19 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 44 (rooted using default outgroup) Branch lengths and linkages for tree #44 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 3 3 3 18 19 1 1 1 17 18 2 2 2 16 17 1 1 1 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H014 (5) 17 2 2 2 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 0 0 0 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | /-------15 | | | /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | 21 | \------------------------------------- H014 | /-------18 | | +---------------------------------------------- H007 | | | | /-------19 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------20 | +---------------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 45 (rooted using default outgroup) Branch lengths and linkages for tree #45 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 19 20 2 2 3 H007 (3) 19 2 1 2 H012 (10) 19 2 1 2 H011 (13) 19 0 0 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 20---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------19------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 46 (rooted using default outgroup) Branch lengths and linkages for tree #46 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 18 21 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | 22 /---------18 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------21 /---------19 | | | \---------- H011 | +----------------------------------------20 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 47 (rooted using default outgroup) Branch lengths and linkages for tree #47 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 18 22 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 21 22 0 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | 23 /---------18 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------19 | | | \---------- H011 | | /--------20 | | | \--------------------- H012 | \------------------------------21 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 48 (rooted using default outgroup) Branch lengths and linkages for tree #48 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 0 0 3 18 19 3 2 3 16 18 3 1 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 17 18 0 0 2 H007 (3) 17 1 1 1 H012 (10) 17 1 1 1 H011 (13) 17 1 1 1 H014 (5) 19 2 0 2 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------18 22 | | /---------- H007 | | | | | | \------------------------------17---------- H012 | /---------19 | | | | \---------- H011 | | | +--------21 \---------------------------------------------------- H014 | | | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_18 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H012 11 1 0.500 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 49 (rooted using default outgroup) Branch lengths and linkages for tree #49 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 19 20 1 1 1 18 19 3 3 3 17 18 1 1 1 16 17 3 3 3 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 0 H007 (3) 17 1 1 1 H011 (13) 17 1 1 1 H012 (10) 18 0 0 0 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 20 2 2 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7568 Rescaled consistency index (RC) = 0.4472 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | | \------------------------------- H013 | /--------17 20 | +------------------------------------------ H007 | | | | /---------18 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------19 | +--------------------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 11 1 0.500 1 ==> 2 node_17 --> node_16 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H007 12 1 0.333 2 ==> 1 node_17 --> H011 13 1 0.500 0 ==> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_20 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 50 (rooted using default outgroup) Branch lengths and linkages for tree #50 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 17 19 2 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 18 19 2 1 2 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 20 21 2 2 3 H007 (3) 20 1 1 2 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 21 | \------------------------------------------------- H014 +----------19 | | /------------ H008 | \-----------------------------------------------18 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 --> 2 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 51 (rooted using default outgroup) Branch lengths and linkages for tree #51 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 0 0 1 17 19 2 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 18 19 2 1 2 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 20 21 2 2 3 H007 (3) 20 1 1 2 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 21 | \------------------------------------------------- H014 +----------19 | | /------------ H008 | \-----------------------------------------------18 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 --> 2 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 52 (rooted using default outgroup) Branch lengths and linkages for tree #52 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 18 22 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 21 22 0 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | 23 /---------18 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------19 | | | \---------- H011 | | /--------20 | | | \--------------------- H012 | \------------------------------21 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 53 (rooted using default outgroup) Branch lengths and linkages for tree #53 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 3 H007 (3) 21 1 1 2 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 22 | \---------------------------------------------------- H014 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 54 (rooted using default outgroup) Branch lengths and linkages for tree #54 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 19 21 2 2 3 H007 (3) 19 1 1 2 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 20 21 2 1 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | +----------18 \------------------------------------------------- H001 | | 21 \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 55 (rooted using default outgroup) Branch lengths and linkages for tree #55 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 23-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------21 /---------- H012 | | \---------20 +----------------------------------------22 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 56 (rooted using default outgroup) Branch lengths and linkages for tree #56 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 23-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------20 | | \---------- H011 | /--------21 | | \--------------------- H012 +----------------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 57 (rooted using default outgroup) Branch lengths and linkages for tree #57 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 19 20 2 2 3 H007 (3) 19 2 1 2 H012 (10) 19 2 1 2 H011 (13) 19 0 0 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 20---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------19------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 58 (rooted using default outgroup) Branch lengths and linkages for tree #58 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 3 H007 (3) 20 1 0 2 19 20 0 0 1 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 H009 (11) 21 2 0 2 22 23 2 1 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | +----------18 \------------------------------------------------- H013 | | 23 \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------20 /------------ H012 | | \----------19 +-----------------------------------21 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------22 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 59 (rooted using default outgroup) Branch lengths and linkages for tree #59 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 1 0 2 21 22 0 0 1 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 23 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 24 | | | | \---------------------------------------------------- H014 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 60 (rooted using default outgroup) Branch lengths and linkages for tree #60 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 17 22 2 2 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 20 22 0 0 1 19 20 2 2 3 H007 (3) 19 1 0 2 18 19 0 0 1 H012 (10) 18 1 1 2 H011 (13) 18 1 0 1 H009 (11) 20 2 0 2 21 22 2 1 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H001 | | 22 \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------19 /--------------- H012 | | \------------18 +---------------------------20 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------21 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 Tree number 61 (rooted using default outgroup) Branch lengths and linkages for tree #61 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 23-------19 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------21 /---------- H012 | | \---------20 +----------------------------------------22 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 62 (rooted using default outgroup) Branch lengths and linkages for tree #62 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 2 0 3 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 3 19 20 0 0 1 H007 (3) 19 1 1 2 H011 (13) 19 1 0 1 H012 (10) 20 1 0 2 21 22 2 0 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | +----------18 \------------------------------------------------- H013 | | 23 \------------------------------------------------------------- H014 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 +-----------------------------------22 | | /------------ H008 | \----------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 63 (rooted using default outgroup) Branch lengths and linkages for tree #63 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | +----------18 \------------------------------------------------- H013 | | 22 \------------------------------------------------------------- H014 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 | | +-----------------------------------21------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 64 (rooted using default outgroup) Branch lengths and linkages for tree #64 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 3 H007 (3) 20 1 0 2 19 20 0 0 1 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 H009 (11) 21 2 0 2 22 23 2 1 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | +----------18 \------------------------------------------------- H001 | | 23 \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------20 /------------ H012 | | \----------19 +-----------------------------------21 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------22 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 65 (rooted using default outgroup) Branch lengths and linkages for tree #65 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 17 22 2 2 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 20 22 0 0 1 19 20 2 2 3 H007 (3) 19 1 0 2 18 19 0 0 1 H012 (10) 18 1 1 2 H011 (13) 18 1 0 1 H009 (11) 20 2 0 2 21 22 2 1 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H013 | | 22 \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------19 /--------------- H012 | | \------------18 +---------------------------20 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------21 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 --> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 Tree number 66 (rooted using default outgroup) Branch lengths and linkages for tree #66 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 17 20 2 2 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 18 20 2 2 3 H007 (3) 18 1 1 2 H012 (10) 18 1 1 2 H011 (13) 18 1 0 1 19 20 2 1 2 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H009 (11) 20 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H001 | | 20 \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------18--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 67 (rooted using default outgroup) Branch lengths and linkages for tree #67 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 17 22 2 2 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 21 22 0 0 1 19 21 2 2 3 18 19 0 0 1 H007 (3) 18 1 1 2 H011 (13) 18 1 0 1 H012 (10) 19 1 0 2 20 21 2 0 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H013 | | 22 \---------------------------------------------------------- H014 | | /--------------- H007 | /------------18 | | \--------------- H011 | /-------------19 | | \----------------------------- H012 +---------------------------21 | | /--------------- H008 | \---------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 68 (rooted using default outgroup) Branch lengths and linkages for tree #68 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 17 22 2 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 21 22 1 1 1 20 21 0 0 1 19 20 2 2 3 18 19 1 1 1 H007 (3) 18 2 1 2 H011 (13) 18 0 0 1 H012 (10) 19 1 0 1 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 23 | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------18 +----------22 | \------------ H011 | | /----------19 | | | \------------------------ H012 | | /-----------20 | | | \------------------------------------ H006 | \----------21 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 69 (rooted using default outgroup) Branch lengths and linkages for tree #69 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 17 21 2 2 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 20 21 1 1 1 19 20 2 2 3 18 19 1 1 1 H007 (3) 18 2 1 2 H011 (13) 18 0 0 1 H012 (10) 19 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H013 | | 21 \---------------------------------------------------------- H014 | | /--------------- H007 | /------------18 | | \--------------- H011 | /-------------19 | | \----------------------------- H012 | | +---------------------------20-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 13 1 0.333 1 --> 0 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 70 (rooted using default outgroup) Branch lengths and linkages for tree #70 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 17 20 2 2 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 18 20 2 2 3 H007 (3) 18 1 1 2 H012 (10) 18 1 1 2 H011 (13) 18 1 0 1 19 20 2 1 2 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H009 (11) 20 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H013 | | 20 \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------18--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_18 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 71 (rooted using default outgroup) Branch lengths and linkages for tree #71 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 0 0 1 17 19 2 1 3 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 1 H014 (5) 17 0 0 0 18 19 2 1 2 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 1 0 2 20 21 0 0 1 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 22 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 23 | | | | \------------------------------------------------- H014 +----------19 | | /------------ H008 | \-----------------------------------------------18 | \------------ H006 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 \-----------------------------------22 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 72 (rooted using default outgroup) Branch lengths and linkages for tree #72 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 18 21 1 1 1 17 18 1 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | /--------15 | | | /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | 22 /---------18 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------21 /---------19 | | | \---------- H011 | +----------------------------------------20 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 --> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 73 (rooted using default outgroup) Branch lengths and linkages for tree #73 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 3 17 18 1 1 4 16 17 2 2 2 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 2 H013 (6) 17 3 0 3 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H001 | | | | /---------18 \------------------------------------------ H013 | | | 24 | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------19 +--------23 | \---------- H011 | | /--------20 | | | \--------------------- H012 | | /---------21 | | | \------------------------------- H006 | \-------------------22 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 13 1 0.333 1 --> 0 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 74 (rooted using default outgroup) Branch lengths and linkages for tree #74 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | | /-------18 \------------------------------------- H001 24 | | | /-------19 \---------------------------------------------- H014 | | | +-------20 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------22 /--------- H012 | | \-------21 \--------------------------------------------23 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 75 (rooted using default outgroup) Branch lengths and linkages for tree #75 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | /------15 /-------- H003 | | \------14 | /------16 \-------- H005 | | | | /-------17 \------------------------ H013 | | | | /------18 \-------------------------------- H001 | | | 24 /------19 \----------------------------------------- H014 | | | | /------20 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------23 /-------- H007 | | /------21 | | | \-------- H011 | \-----------------------------------------------22 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 76 (rooted using default outgroup) Branch lengths and linkages for tree #76 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | | /-------18 \------------------------------------- H001 | | | 24 /-------19 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------20 | | | \--------- H011 | | /-------21 | | | \------------------ H012 | \-----------------------------------22 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 77 (rooted using default outgroup) Branch lengths and linkages for tree #77 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | /-------15 /--------- H003 | | \-------14 | /--------16 \--------- H005 | | | | /-------17 \--------------------------- H013 | | | | /-------18 \------------------------------------- H001 | | | 23 /-------19 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------22 /-------20 | | | \--------- H011 | +--------------------------------------------21 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 78 (rooted using default outgroup) Branch lengths and linkages for tree #78 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 1 0 2 21 22 0 0 1 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 23 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 24 | | | | \---------------------------------------------------- H014 +--------20 | | /---------- H008 | \---------------------------------------------------19 | \---------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 79 (rooted using default outgroup) Branch lengths and linkages for tree #79 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 21 22 0 0 1 20 21 2 2 3 H007 (3) 20 2 0 2 19 20 0 0 1 H012 (10) 19 2 1 2 H011 (13) 19 0 0 1 H009 (11) 21 1 0 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 22---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------20 /------------ H012 | | \----------19 +-----------------------------------21 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 80 (rooted using default outgroup) Branch lengths and linkages for tree #80 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 0 0 1 17 19 2 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 18 19 2 1 2 H008 (4) 18 1 0 1 H006 (12) 18 0 0 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 1 0 2 20 21 0 0 1 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 22 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 23 | | | | \------------------------------------------------- H014 +----------19 | | /------------ H008 | \-----------------------------------------------18 | \------------ H006 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 \-----------------------------------22 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_19 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_18 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 81 (rooted using default outgroup) Branch lengths and linkages for tree #81 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 21 22 0 0 1 20 21 2 2 3 H007 (3) 20 2 0 2 19 20 0 0 1 H012 (10) 19 2 1 2 H011 (13) 19 0 0 1 H009 (11) 21 1 0 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 22---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------20 /------------ H012 | | \----------19 +-----------------------------------21 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_19 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 82 (rooted using default outgroup) Branch lengths and linkages for tree #82 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 17 22 2 1 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 21 22 1 1 1 20 21 0 0 1 19 20 2 2 3 18 19 1 1 1 H007 (3) 18 2 1 2 H011 (13) 18 0 0 1 H012 (10) 19 1 0 1 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 23 | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------18 +----------22 | \------------ H011 | | /----------19 | | | \------------------------ H012 | | /-----------20 | | | \------------------------------------ H006 | \----------21 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 83 (rooted using default outgroup) Branch lengths and linkages for tree #83 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 2 H010 (2) 15 1 1 1 H001 (7) 15 2 2 2 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 1 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | 22---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 +-----------------------------------21 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 84 (rooted using default outgroup) Branch lengths and linkages for tree #84 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 1 1 1 17 18 1 1 2 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 H008 (4) 18 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 0 0 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 2 0 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | /----------15 | | | /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H001 | | | 22---------18 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 +-----------------------------------21 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 1.000 1 ==> 2 node_18 --> node_17 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_18 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 85 (rooted using default outgroup) Branch lengths and linkages for tree #85 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 0 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 3 19 20 0 0 1 H007 (3) 19 1 1 2 H011 (13) 19 1 0 1 H012 (10) 20 1 0 2 21 22 2 0 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | +----------18 \------------------------------------------------- H001 | | 23 \------------------------------------------------------------- H014 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 +-----------------------------------22 | | /------------ H008 | \----------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 86 (rooted using default outgroup) Branch lengths and linkages for tree #86 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | /--------15 /---------- H003 | | \---------14 | /---------16 \---------- H005 | | | | /--------17 \------------------------------- H013 | | | | /---------18 \------------------------------------------ H001 | | | 24 | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------19 +--------23 | \---------- H011 | | /--------20 | | | \--------------------- H012 | | /---------21 | | | \------------------------------- H006 | \-------------------22 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 87 (rooted using default outgroup) Branch lengths and linkages for tree #87 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 17 22 2 2 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 2 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 21 22 0 0 1 19 21 2 2 3 18 19 0 0 1 H007 (3) 18 1 1 2 H011 (13) 18 1 0 1 H012 (10) 19 1 0 2 20 21 2 0 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H001 | | 22 \---------------------------------------------------------- H014 | | /--------------- H007 | /------------18 | | \--------------- H011 | /-------------19 | | \----------------------------- H012 +---------------------------21 | | /--------------- H008 | \---------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.333 0 --> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 88 (rooted using default outgroup) Branch lengths and linkages for tree #88 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 3 17 18 1 1 4 16 17 2 2 3 15 16 2 0 2 H010 (2) 15 1 1 1 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H013 (6) 16 1 0 3 H001 (7) 17 2 0 2 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | /----------15 /------------ H003 | | \----------14 | /-----------16 \------------ H005 | | | | /----------17 \------------------------------------ H013 | | | +----------18 \------------------------------------------------- H001 | | 22 \------------------------------------------------------------- H014 | | /------------ H007 | /----------19 | | \------------ H011 | /----------20 | | \------------------------ H012 | | +-----------------------------------21------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> node_15 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_16 --> H013 13 1 0.333 1 --> 0 node_17 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 89 (rooted using default outgroup) Branch lengths and linkages for tree #89 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 17 21 2 2 3 16 17 3 3 4 15 16 2 2 3 H010 (2) 15 1 1 1 H013 (6) 15 3 2 3 14 15 1 1 1 H003 (8) 14 1 1 1 H005 (9) 14 1 1 1 H001 (7) 16 0 0 0 H014 (5) 17 0 0 0 20 21 1 1 1 19 20 2 2 3 18 19 1 1 1 H007 (3) 18 2 1 2 H011 (13) 18 0 0 1 H012 (10) 19 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7297 Rescaled consistency index (RC) = 0.4125 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | /-------------15 | | | /--------------- H003 | | \------------14 | /------------16 \--------------- H005 | | | +-------------17 \-------------------------------------------- H001 | | 21 \---------------------------------------------------------- H014 | | /--------------- H007 | /------------18 | | \--------------- H011 | /-------------19 | | \----------------------------- H012 | | +---------------------------20-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_17 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_17 --> node_16 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_16 --> node_15 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_15 --> H010 5 1 1.000 2 ==> 1 node_15 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 13 1 0.333 1 --> 0 node_15 --> node_14 3 1 1.000 2 ==> 1 node_14 --> H003 4 1 1.000 2 ==> 1 node_14 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_19 --> H012 13 1 0.333 1 --> 0 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 ALTree-v1.3.2/test/paup/unrooted_absent/localisation/test.tree000066400000000000000000000246531412112337500244700ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Fri Jan 13 11:19:32 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/unrooted_absent/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 69978 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = <1 sec (CPU time = 0.09 sec) ] tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),(H008,H014),H009,H006)); tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),((H008,H014),H006),H009)); tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),(H008,H014),H006),H009)); tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),((H008,H014),H006)),H009)); tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),(H008,H014)),H009,H006)); tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H008,H014),H009,H006)); tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),H008),H006),H009)); tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),((H008,H014),H006))); tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),((H008,H006),H014),H009)); tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H006),(H008,H014)),H009)); tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),(H008,H006),H014,H009)); tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_14 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_15 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_16 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_17 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H007,H012,H011),(H008,H006),H009)); tree PAUP_18 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_21 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_22 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005)),H001),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_24 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_25 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_26 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_27 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),(H008,H014),H006)); tree PAUP_28 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),(H008,H006),H014)); tree PAUP_29 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),((H008,H006),H014))); tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_31 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H012,H011),H007),H009),(H008,H006))); tree PAUP_33 = [&U] (H002,((((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H006),H008),H014),H009)); tree PAUP_34 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H006),(H008,H014),H009)); tree PAUP_35 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_36 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),(H008,H006)),H014,H009)); tree PAUP_37 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H007,H011),H012),(H008,H006)),H009)); tree PAUP_38 = [&U] (H002,(((((((H010,H013,(H003,H005)),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_39 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),H008),H009,H006)); tree PAUP_40 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),(H008,H006),H009)); tree PAUP_41 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),((H008,H006),H014)),H009)); tree PAUP_42 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),(H008,H006),H014),H009)); tree PAUP_43 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_44 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H007,H011),H012),H008,H006),H009)); tree PAUP_45 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_46 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_48 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),(H008,H006)),H009)); tree PAUP_49 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H008,H006),H014,H009)); tree PAUP_50 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_51 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_52 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_53 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_54 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_57 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_58 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_59 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_60 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_61 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_62 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_63 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_64 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_65 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_66 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_67 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_68 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_69 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_70 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_71 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_72 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_73 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_74 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_75 = [&U] (H002,((((((((H010,(H003,H005)),H013),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_76 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_77 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_78 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_79 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_81 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_82 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_83 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_84 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_85 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_86 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_87 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_88 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_89 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),(((H007,H011),H012),H008,H006),H009)); End; ALTree-v1.3.2/test/paup/unrooted_present/000077500000000000000000000000001412112337500203415ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/unrooted_present/association/000077500000000000000000000000001412112337500226555ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/unrooted_present/association/1_caco.asso000066400000000000000000000042131412112337500246710ustar00rootroot00000000000000 /----* H010 case/control:7/5 | Site: 5 Sens: 2-->1 |----* H001 case/control:11/9 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 | /----* H003 case/control:5/6 | | Site: 4 Sens: 2-->1 |----* 15 case/control:12/13 | | Site: 3 Sens: 2-->1 | \----* H005 case/control:7/7 | Site: 12 Sens: 2-->1 -----* 16 case/control:200/200 | | [0] ddl=4 chi2=9.33 p_value_chi2=0.0535 | [1] ddl=6 chi2=11.24 p_value_chi2=0.065 | [2] ddl=9 chi2=23.55 p_value_chi2=0.004 | [3] ddl=12 chi2=25.20 p_value_chi2=0.009 | [4] ddl=13 chi2=25.55 p_value_chi2=0.01 |----* H000 case/control:98/126 | /----* H013 case/control:2/4 \----* 17 case/control:72/47 | Site: 6 Sens: 2-->1 | Site: 7 Sens: 2-->1 | /----* H007 case/control:7/13 | | Site: 12 Sens: 2-->1 | |----* H012 case/control:1/4 | | Site: 11 Sens: 2-->1 \----* 18 case/control:70/43 | Site: 8 Sens: 2-->1 | Site: 9 Sens: 2-->1 | Site: 10 Sens: 2-->1 |----* H011 case/control:5/1 | /----* H002 case/control:8/6 | | /----* H008 case/control:9/2 | | | Site: 11 Sens: 2-->1 | |----* 19 case/control:13/4 | | | Site: 9 Sens: 1-->2 | | \----* H014 case/control:4/2 | | Site: 10 Sens: 1-->2 \----* 20 case/control:57/25 | Site: 1 Sens: 2-->1 | Site: 2 Sens: 2-->1 |----* H009 case/control:8/2 | Site: 12 Sens: 2-->1 \----* H006 case/control:28/13 Site: 11 Sens: 2-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 ALTree-v1.3.2/test/paup/unrooted_present/association/caco.paup000066400000000000000000000020161412112337500244500ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 [H004 222222222222] H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 H000 222222222222 ; end; begin assumptions; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/unrooted_present/association/nb_cas_control.txt000066400000000000000000000003301412112337500263770ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 H000 m098 c126 ALTree-v1.3.2/test/paup/unrooted_present/association/run_altree000077500000000000000000000006101412112337500247400ustar00rootroot00000000000000#!/bin/sh -x # to run paup paup caco.paup # to perform the association test. # only one permutation is done: the corrected p_value doesn't mean # anything! # the --outgroup option is specified because the tree must be rooted for # the association test ../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \ --outgroup H000 -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso ALTree-v1.3.2/test/paup/unrooted_present/association/test.res.log000066400000000000000000016220501412112337500251350ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Tue Jan 10 20:35:47 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 12 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 10 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 2 (rooted using default outgroup) Branch lengths and linkages for tree #2 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 3 (rooted using default outgroup) Branch lengths and linkages for tree #3 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H014 +------------------------------------------20 | \----------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 4 (rooted using default outgroup) Branch lengths and linkages for tree #4 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------21 /---------- H008 | +---------------------------------------------------20 | | \---------- H014 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 5 (rooted using default outgroup) Branch lengths and linkages for tree #5 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------22 /---------- H008 | | /---------20 | | | \---------- H014 | \----------------------------------------21 | \--------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 6 (rooted using default outgroup) Branch lengths and linkages for tree #6 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 1 0 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------21 | | | \------------ H011 | | | | /------------ H008 | \-----------------------------------------------20 | \------------ H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_21 --> node_20 9 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 7 (rooted using default outgroup) Branch lengths and linkages for tree #7 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 2 2 2 17 19 2 2 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 21 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------20 \------------ H011 | | | +------------------------------------------------------------- H008 | | | \------------------------------------------------------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 8 (rooted using default outgroup) Branch lengths and linkages for tree #8 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 2 19 20 2 2 2 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 1 0 1 H008 (4) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------19 | | | /--------- H007 | | | | | | \--------------------------18--------- H012 | /-------20 | | | | \--------- H011 | | | | /-------21 \---------------------------------------------- H014 | | | +-------22 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 9 (rooted using default outgroup) Branch lengths and linkages for tree #9 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H006 (12) 22 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H014 \--------------------------------------------------22 \--------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 --> 1 Tree number 10 (rooted using default outgroup) Branch lengths and linkages for tree #10 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H006 +------------------------------------------20 | \----------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 11 (rooted using default outgroup) Branch lengths and linkages for tree #11 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------18 | | +------------------------------------- H007 | | | | /-------19 \------------------------------------- H011 | | | | /-------20 \---------------------------------------------- H012 | | | | | \------------------------------------------------------- H006 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 12 (rooted using default outgroup) Branch lengths and linkages for tree #12 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 20 2 2 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_20 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 13 (rooted using default outgroup) Branch lengths and linkages for tree #13 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 14 (rooted using default outgroup) Branch lengths and linkages for tree #14 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 15 (rooted using default outgroup) Branch lengths and linkages for tree #15 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 16 (rooted using default outgroup) Branch lengths and linkages for tree #16 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 17 (rooted using default outgroup) Branch lengths and linkages for tree #17 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 18 (rooted using default outgroup) Branch lengths and linkages for tree #18 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 0 0 1 19 20 2 2 2 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 1 0 1 H008 (4) 21 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------21 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 19 (rooted using default outgroup) Branch lengths and linkages for tree #19 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 20 (rooted using default outgroup) Branch lengths and linkages for tree #20 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 21 (rooted using default outgroup) Branch lengths and linkages for tree #21 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 22 (rooted using default outgroup) Branch lengths and linkages for tree #22 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 23 (rooted using default outgroup) Branch lengths and linkages for tree #23 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 2 22 23 0 0 1 H007 (3) 22 1 1 1 H011 (13) 22 0 0 0 H012 (10) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H001 | | | | /------19 \-------------------------------- H013 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_23 --> H012 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 24 (rooted using default outgroup) Branch lengths and linkages for tree #24 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 25 (rooted using default outgroup) Branch lengths and linkages for tree #25 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 23 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------22 \------------ H011 | | | | /------------ H008 | | /----------20 | | | \------------ H006 | \-----------------------------------21 | \------------------------ H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 26 (rooted using default outgroup) Branch lengths and linkages for tree #26 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 2 19 20 2 2 2 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------20 | | | \------------ H011 | | | \------------------------------------------------------------- H014 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 27 (rooted using default outgroup) Branch lengths and linkages for tree #27 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 2 18 20 2 2 2 17 18 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H007 | | | | \-----------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 28 (rooted using default outgroup) Branch lengths and linkages for tree #28 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 29 (rooted using default outgroup) Branch lengths and linkages for tree #29 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 1 19 20 2 2 2 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 0 0 0 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H014 (5) 22 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | +---------------- H001 | | | /------16 /-------- H003 | | +------15 | | | \-------- H005 | /------17 | | | | \---------------- H000 | | | | | \------------------------ H013 23 /-------18 | | +-------------------------------- H007 | | | | /------19 \-------------------------------- H011 | | | | /------20 \----------------------------------------- H012 | | | | /------21 \------------------------------------------------- H006 | | | +------22 \--------------------------------------------------------- H008 | | | \----------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 30 (rooted using default outgroup) Branch lengths and linkages for tree #30 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H012 | | | \--------------------------------------------------------------- H006 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 31 (rooted using default outgroup) Branch lengths and linkages for tree #31 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 1 0 1 20 21 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 22 2 2 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 32 (rooted using default outgroup) Branch lengths and linkages for tree #32 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 33 (rooted using default outgroup) Branch lengths and linkages for tree #33 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 34 (rooted using default outgroup) Branch lengths and linkages for tree #34 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H013 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H001 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 35 (rooted using default outgroup) Branch lengths and linkages for tree #35 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 36 (rooted using default outgroup) Branch lengths and linkages for tree #36 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 2 2 2 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | | | \------------ H011 +----------21 | | /------------ H008 | +-----------------------------------------------20 | | \------------ H006 | | | \------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 37 (rooted using default outgroup) Branch lengths and linkages for tree #37 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 2 2 2 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | | | \------------------------------------------------- H014 | | +----------19------------------------------------------------------------- H007 | | | +------------------------------------------------------------- H012 | | | \------------------------------------------------------------- H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 38 (rooted using default outgroup) Branch lengths and linkages for tree #38 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 22 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------21 | +---------------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 39 (rooted using default outgroup) Branch lengths and linkages for tree #39 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 2 2 2 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H007 (3) 20 1 0 1 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H012 | | | | /-------20 \---------------------------------------------- H011 | | | +-------21 \------------------------------------------------------- H007 | | | \---------------------------------------------------------------- H009 | | /--------- H008 \--------------------------------------------------------------22 \--------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_20 --> H007 12 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 40 (rooted using default outgroup) Branch lengths and linkages for tree #40 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 41 (rooted using default outgroup) Branch lengths and linkages for tree #41 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 42 (rooted using default outgroup) Branch lengths and linkages for tree #42 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 43 (rooted using default outgroup) Branch lengths and linkages for tree #43 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 2 19 20 2 2 2 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------22 \---------------------------------------------------- H014 | | | | /---------- H008 | \---------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 44 (rooted using default outgroup) Branch lengths and linkages for tree #44 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H014 (5) 22 2 2 2 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 Tree number 45 (rooted using default outgroup) Branch lengths and linkages for tree #45 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 2 2 2 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 0 0 0 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H014 (5) 22 2 1 2 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H006 \--------------------------------------------------22 \--------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 Tree number 46 (rooted using default outgroup) Branch lengths and linkages for tree #46 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 47 (rooted using default outgroup) Branch lengths and linkages for tree #47 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 2 2 2 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 0 0 0 H012 (10) 19 0 0 0 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 21 2 2 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 21 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------20 | +--------------------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 48 (rooted using default outgroup) Branch lengths and linkages for tree #48 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 49 (rooted using default outgroup) Branch lengths and linkages for tree #49 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 2 H007 (3) 21 1 1 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 50 (rooted using default outgroup) Branch lengths and linkages for tree #50 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 51 (rooted using default outgroup) Branch lengths and linkages for tree #51 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 2 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 2 20 21 2 0 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H007 | | | | \---------------------------------------------------20---------- H012 | | | \---------- H011 | | /---------- H008 +-------------------------------------------------------------22 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 52 (rooted using default outgroup) Branch lengths and linkages for tree #52 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 53 (rooted using default outgroup) Branch lengths and linkages for tree #53 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 54 (rooted using default outgroup) Branch lengths and linkages for tree #54 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | 25 /-------19 \------------------------------------- H001 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 55 (rooted using default outgroup) Branch lengths and linkages for tree #55 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 2 H007 (3) 22 1 1 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 56 (rooted using default outgroup) Branch lengths and linkages for tree #56 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.333 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 57 (rooted using default outgroup) Branch lengths and linkages for tree #57 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 1 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 58 (rooted using default outgroup) Branch lengths and linkages for tree #58 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 59 (rooted using default outgroup) Branch lengths and linkages for tree #59 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 60 (rooted using default outgroup) Branch lengths and linkages for tree #60 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 61 (rooted using default outgroup) Branch lengths and linkages for tree #61 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 62 (rooted using default outgroup) Branch lengths and linkages for tree #62 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 63 (rooted using default outgroup) Branch lengths and linkages for tree #63 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 64 (rooted using default outgroup) Branch lengths and linkages for tree #64 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | 25 /---------19 \------------------------------------------ H013 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 65 (rooted using default outgroup) Branch lengths and linkages for tree #65 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 23 24 1 1 1 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 66 (rooted using default outgroup) Branch lengths and linkages for tree #66 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 67 (rooted using default outgroup) Branch lengths and linkages for tree #67 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 22 23 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 68 (rooted using default outgroup) Branch lengths and linkages for tree #68 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 69 (rooted using default outgroup) Branch lengths and linkages for tree #69 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | 25 /-------19 \------------------------------------- H013 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.333 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 70 (rooted using default outgroup) Branch lengths and linkages for tree #70 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 71 (rooted using default outgroup) Branch lengths and linkages for tree #71 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 72 (rooted using default outgroup) Branch lengths and linkages for tree #72 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 2 22 23 0 0 1 H007 (3) 22 1 1 1 H011 (13) 22 0 0 0 H012 (10) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H013 | | | | /------19 \-------------------------------- H001 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_23 --> H012 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 73 (rooted using default outgroup) Branch lengths and linkages for tree #73 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 2 H007 (3) 20 1 0 1 19 20 0 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 74 (rooted using default outgroup) Branch lengths and linkages for tree #74 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 75 (rooted using default outgroup) Branch lengths and linkages for tree #75 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 76 (rooted using default outgroup) Branch lengths and linkages for tree #76 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 77 (rooted using default outgroup) Branch lengths and linkages for tree #77 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H013 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 78 (rooted using default outgroup) Branch lengths and linkages for tree #78 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 2 H007 (3) 22 1 0 1 21 22 0 0 1 H012 (10) 21 1 1 1 H011 (13) 21 0 0 0 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H001 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 79 (rooted using default outgroup) Branch lengths and linkages for tree #79 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 80 (rooted using default outgroup) Branch lengths and linkages for tree #80 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 81 (rooted using default outgroup) Branch lengths and linkages for tree #81 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 2 19 20 0 0 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 82 (rooted using default outgroup) Branch lengths and linkages for tree #82 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 2 H007 (3) 23 1 0 1 22 23 0 0 1 H012 (10) 22 1 1 1 H011 (13) 22 0 0 0 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | 25 /---------19 \------------------------------------------ H001 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 83 (rooted using default outgroup) Branch lengths and linkages for tree #83 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 2 H007 (3) 20 1 0 1 19 20 0 0 1 H012 (10) 19 1 1 1 H011 (13) 19 0 0 0 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 84 (rooted using default outgroup) Branch lengths and linkages for tree #84 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 85 (rooted using default outgroup) Branch lengths and linkages for tree #85 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 2 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 2 19 20 1 1 1 H007 (3) 19 1 1 1 H011 (13) 19 0 0 0 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 86 (rooted using default outgroup) Branch lengths and linkages for tree #86 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 2 H007 (3) 21 1 0 1 20 21 0 0 1 H012 (10) 20 1 1 1 H011 (13) 20 0 0 0 H009 (11) 22 1 0 1 23 24 1 1 1 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_22 --> H009 12 1 0.333 2 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 87 (rooted using default outgroup) Branch lengths and linkages for tree #87 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 2 20 21 0 0 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 1 0 1 22 23 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 88 (rooted using default outgroup) Branch lengths and linkages for tree #88 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 2 21 22 0 0 1 H007 (3) 21 1 1 1 H011 (13) 21 0 0 0 H012 (10) 22 1 0 1 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 89 (rooted using default outgroup) Branch lengths and linkages for tree #89 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 2 20 21 1 1 1 H007 (3) 20 1 1 1 H011 (13) 20 0 0 0 H012 (10) 21 0 0 0 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 20 Tree length = 20 Consistency index (CI) = 0.6000 Homoplasy index (HI) = 0.4000 CI excluding uninformative characters = 0.5556 HI excluding uninformative characters = 0.4444 Retention index (RI) = 0.7949 Rescaled consistency index (RC) = 0.4769 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 ALTree-v1.3.2/test/paup/unrooted_present/association/test.tree000066400000000000000000000254551412112337500245300ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Tue Jan 10 20:35:47 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/non_enracine_present/association/caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > Of 12 total characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90406 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H014),H009,H006)); tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H014),H006),H009)); tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H014),H006),H009)); tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),((H008,H014),H006)),H009)); tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H014)),H009,H006)); tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H008,H014),H009,H006)); tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H006),H009)); tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H014),H006))); tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H006),H014),H009)); tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014)),H009)); tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H006),H014,H009)); tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_14 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_15 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_16 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_17 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_18 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H009,H006)); tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_21 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_22 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_24 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_25 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),((H008,H006),H014)),H009)); tree PAUP_26 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006),H009)); tree PAUP_27 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_28 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_29 = [&U] (H002,((((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),H008),H014),H009)); tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014),H009)); tree PAUP_31 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H006)),H014,H009)); tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),(H008,H006)),H009)); tree PAUP_33 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_34 = [&U] (H002,(((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_35 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H014),H006)); tree PAUP_36 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H006),H014),H009)); tree PAUP_37 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H007,H012,H011),(H008,H006),H009)); tree PAUP_38 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),H008,H006),H009)); tree PAUP_39 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H012,H011),H007),H009),(H008,H006))); tree PAUP_40 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_41 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_42 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_43 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006)),H009)); tree PAUP_44 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H006),H014)); tree PAUP_45 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H006),H014))); tree PAUP_46 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H008,H006),H014,H009)); tree PAUP_48 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_49 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_50 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_51 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_52 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_53 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_54 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_57 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_58 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_59 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_60 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_61 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_62 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_63 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_64 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_65 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_66 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_67 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_68 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_69 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_70 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_71 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_72 = [&U] (H002,((((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_73 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_74 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_75 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_76 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_77 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_78 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_79 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_81 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_82 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_83 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_84 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_85 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_86 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_87 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_88 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_89 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009)); End; ALTree-v1.3.2/test/paup/unrooted_present/localisation/000077500000000000000000000000001412112337500230225ustar00rootroot00000000000000ALTree-v1.3.2/test/paup/unrooted_present/localisation/caco.loc000066400000000000000000000017401412112337500244300ustar00rootroot00000000000000Localisation method using S-character Results: site number 12 sens 1-->2 V_i = 0.288675134594813 site number 2 sens 1-->2 V_i = 0 site number 6 sens 1-->2 V_i = 0 site number 8 sens 1-->2 V_i = 0 site number 4 sens 2-->1 V_i = 0 site number 3 sens 2-->1 V_i = 0 site number 1 sens 1-->2 V_i = 0 site number 10 sens 1-->2 V_i = 0 site number 7 sens 1-->2 V_i = 0 site number 9 sens 1-->2 V_i = 0 site number 5 sens 2-->1 V_i = 0 site number 12 sens 2-->1 V_i = 0 site number 10 sens 2-->1 V_i = -0.5 site number 11 sens 2-->1 V_i = -0.5 site number 11 sens 1-->2 V_i = -0.5 site number 3 sens 1-->2 V_i = -0.5 site number 4 sens 1-->2 V_i = -0.5 site number 8 sens 2-->1 V_i = -0.5 site number 5 sens 1-->2 V_i = -0.5 site number 9 sens 2-->1 V_i = -0.707106781186547 site number 6 sens 2-->1 V_i = -0.707106781186547 site number 1 sens 2-->1 V_i = -0.707106781186547 site number 7 sens 2-->1 V_i = -0.707106781186547 site number 2 sens 2-->1 V_i = -0.707106781186547 ALTree-v1.3.2/test/paup/unrooted_present/localisation/caco.paup000066400000000000000000000017721412112337500246250ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=12; format symbols="0123456789" missing=?; matrix H002 112221111122 H010 222212222222 H007 222221111121 H008 112221112112 H014 112221112222 H013 222221122222 H001 112222222222 H003 221122222222 H005 221222222221 H012 222221111112 H009 112221111121 H006 112221111112 H011 222221111122 H000 222222222222 ; end; begin assumptions; end; begin paup; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/unrooted_present/localisation/et_caco.paup000066400000000000000000000020561412112337500253110ustar00rootroot00000000000000#Nexus Begin data; dimension ntax=14 nchar=13; format symbols="0123456789CG" missing=?; matrix H002 112221111122? H010 222212222222? H007 2222211111210 H008 1122211121121 H014 112221112222? H013 222221122222? H001 112222222222? H003 221122222222? H005 221222222221? H012 2222211111120 H009 1122211111211 H006 1122211111121 H011 2222211111221 H000 2222222222220 ; end; begin assumptions; end; begin paup; exclude 13; set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran]; hsearch; savetrees from=1 to=1000 file= test.tree root=no format=altnexus; cleartrees nowarn=yes; gettrees rooted=no file=test.tree; log file = test.res.log replace= yes [- no]; include 13; describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes; log stop; end; quit; [WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block] ALTree-v1.3.2/test/paup/unrooted_present/localisation/nb_cas_control.txt000066400000000000000000000003301412112337500265440ustar00rootroot00000000000000H002 m008 c006 H010 m007 c005 H007 m007 c013 H008 m009 c002 H014 m004 c002 H013 m002 c004 H001 m011 c009 H003 m005 c006 H005 m007 c007 H012 m001 c004 H009 m008 c002 H006 m028 c013 H011 m005 c001 H000 m098 c126 ALTree-v1.3.2/test/paup/unrooted_present/localisation/run-prog000077500000000000000000000007101412112337500245170ustar00rootroot00000000000000#!/bin/sh -x #To obtain the paup input file containing the character S ../../../../altree-add-S -i caco.paup -j \ nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.5 # To run paup paup et_caco.paup # To perform the localisation analysis on the 89 equiparsimonious trees ../../../../altree -i test.res.log \ -j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \ --s-site-number 13 --s-site-characters "0->1" \ --co-evo double -l -o caco.loc ALTree-v1.3.2/test/paup/unrooted_present/localisation/test.res.log000066400000000000000000016546701412112337500253170ustar00rootroot00000000000000 P A U P * Portable version 4.0b10 for Unix Tue Jan 10 21:25:45 2006 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Character-exclusion status changed: 1 character re-included Total number of characters now excluded = 0 Number of included characters = 13 Tree description: Unrooted tree(s) rooted using outgroup method Optimality criterion = parsimony Character-status summary: Of 13 total characters: All characters are of type 'unord' All characters have equal weight 2 characters are parsimony-uninformative Number of parsimony-informative characters = 11 Character-state optimization: Delayed transformation (DELTRAN) Tree number 1 (rooted using default outgroup) Branch lengths and linkages for tree #1 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 3 3 3 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 19 20 1 1 1 H008 (4) 19 1 1 1 H014 (5) 19 1 1 1 H009 (11) 20 1 1 1 H006 (12) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 ==> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 node_20 --> H006 11 1 0.333 2 ==> 1 Tree number 2 (rooted using default outgroup) Branch lengths and linkages for tree #2 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 3 (rooted using default outgroup) Branch lengths and linkages for tree #3 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 3 3 3 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H014 (5) 19 1 1 2 H006 (12) 20 1 0 1 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H014 +------------------------------------------20 | \----------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 9 1 0.500 1 ==> 2 node_19 --> H008 11 1 0.333 2 --> 1 node_19 --> H014 10 1 0.500 1 ==> 2 node_20 --> H006 11 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 4 (rooted using default outgroup) Branch lengths and linkages for tree #4 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------21 /---------- H008 | +---------------------------------------------------20 | | \---------- H014 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 5 (rooted using default outgroup) Branch lengths and linkages for tree #5 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H014 (5) 20 1 1 2 H006 (12) 21 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 | | +--------22 /---------- H008 | | /---------20 | | | \---------- H014 | \----------------------------------------21 | \--------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 6 (rooted using default outgroup) Branch lengths and linkages for tree #6 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 1 0 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------21 | | | \------------ H011 | | | | /------------ H008 | \-----------------------------------------------20 | \------------ H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 9 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 7 (rooted using default outgroup) Branch lengths and linkages for tree #7 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 3 3 3 17 19 2 2 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H008 (4) 20 1 1 1 H014 (5) 20 1 1 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 21 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------20 \------------ H011 | | | +------------------------------------------------------------- H008 | | | \------------------------------------------------------------- H014 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H008 11 1 0.333 2 ==> 1 node_20 --> H014 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 8 (rooted using default outgroup) Branch lengths and linkages for tree #8 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 3 19 20 3 2 3 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 20 1 0 1 H008 (4) 21 1 0 1 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------19 | | | /--------- H007 | | | | | | \--------------------------18--------- H012 | /-------20 | | | | \--------- H011 | | | | /-------21 \---------------------------------------------- H014 | | | +-------22 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 9 (rooted using default outgroup) Branch lengths and linkages for tree #9 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H006 (12) 22 1 0 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H014 \--------------------------------------------------22 \--------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 --> 1 Tree number 10 (rooted using default outgroup) Branch lengths and linkages for tree #10 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 3 3 3 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 0 0 1 19 20 1 1 1 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 H014 (5) 20 2 1 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 21 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 | /------------19 | | \--------------- H006 +------------------------------------------20 | \----------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 --> 2 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 11 (rooted using default outgroup) Branch lengths and linkages for tree #11 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H014 (5) 21 1 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | | \--------------------------- H013 23 /-------18 | | +------------------------------------- H007 | | | | /-------19 \------------------------------------- H011 | | | | /-------20 \---------------------------------------------- H012 | | | | | \------------------------------------------------------- H006 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 --> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 12 (rooted using default outgroup) Branch lengths and linkages for tree #12 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 20 0 0 0 18 20 3 3 3 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 19 20 1 1 1 H008 (4) 19 1 1 1 H006 (12) 19 0 0 0 H014 (5) 20 2 2 2 H009 (11) 20 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | | | \-------------------------------------------- H013 20 | +-------------18---------------------------------------------------------- H007 | | | +---------------------------------------------------------- H012 | | | \---------------------------------------------------------- H011 | | /--------------- H008 +--------------------------------------------------------19 | \--------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 node_19 --> H008 9 1 0.333 1 ==> 2 node_20 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_20 --> H009 12 1 0.333 2 ==> 1 Tree number 13 (rooted using default outgroup) Branch lengths and linkages for tree #13 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 22 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 14 (rooted using default outgroup) Branch lengths and linkages for tree #14 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 15 (rooted using default outgroup) Branch lengths and linkages for tree #15 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 20 21 2 2 3 H007 (3) 20 2 1 2 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 21 1 1 1 H006 (12) 21 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H009 12 1 0.333 2 ==> 1 node_21 --> H006 11 1 0.333 2 ==> 1 Tree number 16 (rooted using default outgroup) Branch lengths and linkages for tree #16 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 3 H007 (3) 20 1 1 2 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 21 22 2 1 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 17 (rooted using default outgroup) Branch lengths and linkages for tree #17 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 18 (rooted using default outgroup) Branch lengths and linkages for tree #18 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 0 0 2 19 20 3 2 3 17 19 2 1 2 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 1 1 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 20 1 0 1 H008 (4) 21 1 1 1 H009 (11) 22 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------21 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | +------------------------------------------------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 9 1 0.500 1 ==> 2 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_19 --> node_18 9 1 0.500 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 10 1 0.500 1 --> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_22 --> H009 12 1 0.333 2 ==> 1 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 19 (rooted using default outgroup) Branch lengths and linkages for tree #19 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 20 (rooted using default outgroup) Branch lengths and linkages for tree #20 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 21 (rooted using default outgroup) Branch lengths and linkages for tree #21 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 3 H007 (3) 22 2 1 2 H012 (10) 22 2 1 2 H011 (13) 22 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 22 (rooted using default outgroup) Branch lengths and linkages for tree #22 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 2 1 2 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 3 H007 (3) 22 1 1 2 H012 (10) 22 1 1 2 H011 (13) 22 1 0 1 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_22 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 23 (rooted using default outgroup) Branch lengths and linkages for tree #23 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 3 22 23 0 0 1 H007 (3) 22 2 1 2 H011 (13) 22 0 0 1 H012 (10) 23 2 0 2 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H001 | | | | /------19 \-------------------------------- H013 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 24 (rooted using default outgroup) Branch lengths and linkages for tree #24 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 25 (rooted using default outgroup) Branch lengths and linkages for tree #25 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 3 3 3 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 21 22 0 0 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 23 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | +----------22 \------------ H011 | | | | /------------ H008 | | /----------20 | | | \------------ H006 | \-----------------------------------21 | \------------------------ H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 26 (rooted using default outgroup) Branch lengths and linkages for tree #26 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 3 19 20 3 2 3 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 +----------20 | | | \------------ H011 | | | \------------------------------------------------------------- H014 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 27 (rooted using default outgroup) Branch lengths and linkages for tree #27 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 1 1 3 18 20 2 2 2 17 18 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 0 0 2 19 20 2 0 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H007 | | | | \-----------------------------------------------19------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 13 1 0.500 1 ==> 0 node_20 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 28 (rooted using default outgroup) Branch lengths and linkages for tree #28 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 21 22 2 2 3 H007 (3) 21 2 1 2 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 22 | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /---------- H007 | | +-------------------------------------------------------------21---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 29 (rooted using default outgroup) Branch lengths and linkages for tree #29 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 21 22 1 1 1 20 21 0 0 1 19 20 3 3 3 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 0 0 0 H006 (12) 20 0 0 0 H008 (4) 21 1 0 1 H014 (5) 22 2 1 2 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | +---------------- H001 | | | /------16 /-------- H003 | | +------15 | | | \-------- H005 | /------17 | | | | \---------------- H000 | | | | | \------------------------ H013 23 /-------18 | | +-------------------------------- H007 | | | | /------19 \-------------------------------- H011 | | | | /------20 \----------------------------------------- H012 | | | | /------21 \------------------------------------------------- H006 | | | +------22 \--------------------------------------------------------- H008 | | | \----------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 30 (rooted using default outgroup) Branch lengths and linkages for tree #30 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 H006 (12) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H012 | | | \--------------------------------------------------------------- H006 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 31 (rooted using default outgroup) Branch lengths and linkages for tree #31 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 1 0 1 20 21 1 0 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 22 2 2 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H012 11 1 0.500 2 --> 1 node_21 --> node_20 11 1 0.500 2 --> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 32 (rooted using default outgroup) Branch lengths and linkages for tree #32 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H012 (10) 20 1 0 1 21 22 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------22 | | /--------- H008 | \-----------------------------------------------------21 | \--------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 33 (rooted using default outgroup) Branch lengths and linkages for tree #33 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 34 (rooted using default outgroup) Branch lengths and linkages for tree #34 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H013 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H001 24 | | | /-------19 \------------------------------------- H014 | | | | /-------20 \---------------------------------------------- H008 | | | | | \------------------------------------------------------- H006 | | +-------23 /--------- H007 | | /-------21 | | | \--------- H011 | \--------------------------------------------22 | \------------------ H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 35 (rooted using default outgroup) Branch lengths and linkages for tree #35 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H014 (5) 21 1 1 1 H006 (12) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H014 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.500 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 9 1 0.500 1 ==> 2 node_21 --> H008 11 1 0.333 2 ==> 1 node_21 --> H014 10 1 0.500 1 ==> 2 node_22 --> H006 11 1 0.333 2 ==> 1 Tree number 36 (rooted using default outgroup) Branch lengths and linkages for tree #36 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 0 0 1 19 21 3 3 3 17 19 3 2 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 1 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 20 21 1 1 1 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 H014 (5) 21 2 1 2 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | | \------------------------------------ H013 22 /----------19 | | | /------------ H007 | | | | | | \-----------------------------------18------------ H012 | | | | | \------------ H011 +----------21 | | /------------ H008 | +-----------------------------------------------20 | | \------------ H006 | | | \------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.333 1 --> 2 node_21 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 37 (rooted using default outgroup) Branch lengths and linkages for tree #37 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 19 21 3 3 3 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 20 21 1 1 1 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 21 | | | | \------------------------------------------------- H014 | | +----------19------------------------------------------------------------- H007 | | | +------------------------------------------------------------- H012 | | | \------------------------------------------------------------- H011 | | /------------ H008 +-----------------------------------------------------------20 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 38 (rooted using default outgroup) Branch lengths and linkages for tree #38 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 21 22 1 1 1 20 21 3 3 3 19 20 1 1 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H007 (3) 19 1 1 1 H011 (13) 19 1 1 1 H012 (10) 20 0 0 0 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 22 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H007 | | | | /-------20 \---------------------------------------------- H011 | | | | | \------------------------------------------------------- H012 +-------21 | +---------------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 39 (rooted using default outgroup) Branch lengths and linkages for tree #39 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 3 3 3 19 20 0 0 1 18 19 2 2 2 17 18 1 1 1 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H014 (5) 18 2 2 2 H012 (10) 19 1 1 1 H011 (13) 19 1 1 1 H007 (3) 20 1 0 1 H009 (11) 21 1 0 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | +------------------ H001 | | | /-------16 /--------- H003 | | +-------15 | | | \--------- H005 | /--------17 | | | | \------------------ H000 | | | | /-------18 \--------------------------- H013 23 | | | | \------------------------------------- H014 | /-------19 | | +---------------------------------------------- H012 | | | | /-------20 \---------------------------------------------- H011 | | | +-------21 \------------------------------------------------------- H007 | | | \---------------------------------------------------------------- H009 | | /--------- H008 \--------------------------------------------------------------22 \--------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H014 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.500 0 ==> 1 node_20 --> H007 12 1 0.333 2 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 40 (rooted using default outgroup) Branch lengths and linkages for tree #40 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 41 (rooted using default outgroup) Branch lengths and linkages for tree #41 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 42 (rooted using default outgroup) Branch lengths and linkages for tree #42 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H013 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 43 (rooted using default outgroup) Branch lengths and linkages for tree #43 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 20 22 0 0 3 19 20 3 2 3 17 19 3 1 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 18 19 0 0 2 H007 (3) 18 1 1 1 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H014 (5) 20 2 0 2 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------19 | | | /---------- H007 | | | | | | \------------------------------18---------- H012 | /---------20 | | | | \---------- H011 | | | +--------22 \---------------------------------------------------- H014 | | | | /---------- H008 | \---------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 --> 0 node_19 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 --> 2 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 44 (rooted using default outgroup) Branch lengths and linkages for tree #44 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 21 22 1 1 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H014 (5) 22 2 2 2 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 22 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 +-------------------------------------------------------------21 | \---------- H006 | \------------------------------------------------------------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 ==> 2 node_22 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 Tree number 45 (rooted using default outgroup) Branch lengths and linkages for tree #45 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 20 23 0 0 1 19 20 3 3 3 18 19 0 0 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H012 (10) 18 1 1 1 H011 (13) 18 1 1 1 H007 (3) 19 1 0 1 H009 (11) 20 1 0 1 22 23 0 0 1 21 22 1 1 1 H008 (4) 21 1 0 1 H006 (12) 21 0 0 1 H014 (5) 22 2 1 2 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 23 /--------18 | | +------------------------------------------ H012 | | | | /---------19 \------------------------------------------ H011 | | | +--------20 \---------------------------------------------------- H007 | | | \--------------------------------------------------------------- H009 | | /---------- H008 | /---------21 | | \---------- H006 \--------------------------------------------------22 \--------------------- H014 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H012 11 1 0.500 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_19 --> H007 12 1 0.333 2 --> 1 node_20 --> H009 12 1 0.333 2 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> H008 9 1 0.333 1 --> 2 node_22 --> H014 9 1 0.333 1 --> 2 10 1 0.500 1 ==> 2 Tree number 46 (rooted using default outgroup) Branch lengths and linkages for tree #46 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 19 20 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 H006 (12) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | 24 /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H014 | | | +--------20 \---------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 \----------------------------------------23 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_20 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 Tree number 47 (rooted using default outgroup) Branch lengths and linkages for tree #47 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 20 21 1 1 1 19 20 3 3 3 18 19 1 1 1 17 18 3 3 3 16 17 2 2 2 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H013 (6) 17 0 0 0 H007 (3) 18 1 1 1 H011 (13) 18 1 1 1 H012 (10) 19 0 0 0 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H014 (5) 21 2 2 2 H009 (11) 21 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H001 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | | \------------------------------- H013 21 /--------18 | | +------------------------------------------ H007 | | | | /---------19 \------------------------------------------ H011 | | | | | \---------------------------------------------------- H012 +--------20 | +--------------------------------------------------------------- H008 | | | \--------------------------------------------------------------- H006 | +------------------------------------------------------------------------- H014 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 11 1 0.500 2 ==> 1 node_20 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 13 1 0.500 1 ==> 0 node_19 --> node_18 11 1 0.500 1 ==> 2 node_18 --> node_17 8 1 1.000 1 ==> 2 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.500 2 ==> 1 2 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H007 12 1 0.333 2 ==> 1 node_18 --> H011 13 1 0.500 0 ==> 1 node_20 --> H008 9 1 0.333 1 ==> 2 node_21 --> H014 9 1 0.333 1 ==> 2 10 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 Tree number 48 (rooted using default outgroup) Branch lengths and linkages for tree #48 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 3 H007 (3) 21 1 1 2 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 49 (rooted using default outgroup) Branch lengths and linkages for tree #49 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 20 22 0 0 1 18 20 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 21 22 2 2 3 H007 (3) 21 1 1 2 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 22 | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------ H007 | | +-----------------------------------------------------------21------------ H012 | | | \------------ H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 50 (rooted using default outgroup) Branch lengths and linkages for tree #50 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 19 23 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 24 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------23 /---------20 | | | \---------- H011 | | /--------21 | | | \--------------------- H012 | \------------------------------22 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 51 (rooted using default outgroup) Branch lengths and linkages for tree #51 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 1 1 3 19 21 2 2 2 18 19 1 1 3 17 18 2 2 2 16 17 2 0 2 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 0 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 2 20 21 2 0 2 H007 (3) 20 1 1 1 H012 (10) 20 1 1 1 H011 (13) 20 1 1 1 22 23 1 1 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 22 Tree length = 22 Consistency index (CI) = 0.5909 Homoplasy index (HI) = 0.4091 CI excluding uninformative characters = 0.5500 HI excluding uninformative characters = 0.4500 Retention index (RI) = 0.7805 Rescaled consistency index (RC) = 0.4612 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H007 | | | | \---------------------------------------------------20---------- H012 | | | \---------- H011 | | /---------- H008 +-------------------------------------------------------------22 | \---------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_21 13 1 0.500 1 ==> 0 node_21 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.500 0 ==> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 52 (rooted using default outgroup) Branch lengths and linkages for tree #52 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 19 22 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 22 2 2 3 H007 (3) 20 1 1 2 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 21 22 2 1 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 22 | | \------------------------------------------------------------- H014 | | /------------ H007 | | +-----------------------------------------------------------20------------ H012 | | | \------------ H011 | | /------------ H008 +-----------------------------------------------------------21 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> node_21 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 53 (rooted using default outgroup) Branch lengths and linkages for tree #53 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 22 23 2 2 3 H007 (3) 22 2 1 2 H012 (10) 22 2 1 2 H011 (13) 22 0 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 23 | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /--------- H007 | | +--------------------------------------------------------------22--------- H012 | | | \--------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 54 (rooted using default outgroup) Branch lengths and linkages for tree #54 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 3 H007 (3) 23 2 0 2 22 23 0 0 1 H012 (10) 22 2 1 2 H011 (13) 22 0 0 1 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | 25 /-------19 \------------------------------------- H001 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 55 (rooted using default outgroup) Branch lengths and linkages for tree #55 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 21 23 0 0 1 19 21 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 2 1 2 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 22 23 2 2 3 H007 (3) 22 1 1 2 H012 (10) 22 1 1 2 H011 (13) 22 1 0 1 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 23 | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /---------- H007 | | +-------------------------------------------------------------22---------- H012 | | | \---------- H011 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_22 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 56 (rooted using default outgroup) Branch lengths and linkages for tree #56 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 2 0 2 21 22 0 0 1 H012 (10) 21 2 1 2 H011 (13) 21 0 0 1 H009 (11) 23 1 0 1 H006 (12) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /--------------------- H007 | | | /--------22 /---------- H012 | | \---------21 +----------------------------------------23 \---------- H011 | | | \------------------------------- H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H009 12 1 0.333 2 --> 1 node_24 --> H006 11 1 0.333 2 ==> 1 Tree number 57 (rooted using default outgroup) Branch lengths and linkages for tree #57 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 1 1 1 19 20 1 1 2 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 1 1 23 24 0 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 24 | | +--------20 \---------------------------------------------------- H014 | | | \--------------------------------------------------------------- H008 | | /---------- H007 | /---------21 | | \---------- H011 | /--------22 | | \--------------------- H012 +----------------------------------------23 | \------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 ==> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 58 (rooted using default outgroup) Branch lengths and linkages for tree #58 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 3 H007 (3) 19 1 1 2 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 20 21 2 1 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 59 (rooted using default outgroup) Branch lengths and linkages for tree #59 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 60 (rooted using default outgroup) Branch lengths and linkages for tree #60 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 61 (rooted using default outgroup) Branch lengths and linkages for tree #61 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 21 0 0 0 18 21 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 21 2 2 3 H007 (3) 19 1 1 2 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 20 21 2 1 2 H008 (4) 20 1 1 1 H006 (12) 20 0 0 0 H009 (11) 21 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 21 | | \---------------------------------------------------------- H014 | | /--------------- H007 | | +--------------------------------------------------------19--------------- H012 | | | \--------------- H011 | | /--------------- H008 +--------------------------------------------------------20 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_19 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 ==> 2 node_21 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 62 (rooted using default outgroup) Branch lengths and linkages for tree #62 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 H007 (3) 21 2 0 2 20 21 0 0 1 H012 (10) 20 2 1 2 H011 (13) 20 0 0 1 H009 (11) 22 1 0 1 H006 (12) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | \------------------------------------------------------------------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_20 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H009 12 1 0.333 2 --> 1 node_23 --> H006 11 1 0.333 2 ==> 1 Tree number 63 (rooted using default outgroup) Branch lengths and linkages for tree #63 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 1 1 1 18 19 1 1 2 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 23 | | +----------19 \------------------------------------------------- H014 | | | \------------------------------------------------------------- H008 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------22 | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 64 (rooted using default outgroup) Branch lengths and linkages for tree #64 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 20 21 2 1 2 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 3 H007 (3) 23 1 0 2 22 23 0 0 1 H012 (10) 22 1 1 2 H011 (13) 22 1 0 1 H009 (11) 24 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | 25 /---------19 \------------------------------------------ H013 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_22 --> H011 13 1 0.333 0 --> 1 node_24 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 65 (rooted using default outgroup) Branch lengths and linkages for tree #65 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 3 H007 (3) 21 1 0 2 20 21 0 0 1 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 22 2 0 2 23 24 2 1 2 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 66 (rooted using default outgroup) Branch lengths and linkages for tree #66 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 3 20 21 1 1 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 67 (rooted using default outgroup) Branch lengths and linkages for tree #67 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 3 20 21 0 0 1 H007 (3) 20 1 1 2 H011 (13) 20 1 0 1 H012 (10) 21 1 0 2 22 23 2 0 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H001 | | | +----------19 \------------------------------------------------- H013 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_23 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 68 (rooted using default outgroup) Branch lengths and linkages for tree #68 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | | /-------19 \------------------------------------- H013 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 69 (rooted using default outgroup) Branch lengths and linkages for tree #69 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 24 25 0 0 1 23 24 2 2 3 H007 (3) 23 2 0 2 22 23 0 0 1 H012 (10) 22 2 1 2 H011 (13) 22 0 0 1 H009 (11) 24 1 0 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H001 | | | 25 /-------19 \------------------------------------- H013 | | | | /-------20 \---------------------------------------------- H014 | | | +-------21 \------------------------------------------------------- H008 | | | \---------------------------------------------------------------- H006 | | /------------------ H007 | | | /-------23 /--------- H012 | | \-------22 \--------------------------------------------24 \--------- H011 | \--------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_24 --> H009 12 1 0.333 2 --> 1 Tree number 70 (rooted using default outgroup) Branch lengths and linkages for tree #70 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 2 H013 (6) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 1 1 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 1 0 1 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H001 | | | | /---------19 \------------------------------------------ H013 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H013 1 1 0.333 1 --> 2 2 1 0.333 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 13 1 0.333 1 --> 0 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 71 (rooted using default outgroup) Branch lengths and linkages for tree #71 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 20 24 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 23 24 0 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 25 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------24 /-------21 | | | \--------- H011 | | /-------22 | | | \------------------ H012 | \-----------------------------------23 | \--------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 72 (rooted using default outgroup) Branch lengths and linkages for tree #72 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 21 24 0 0 1 20 21 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 H006 (12) 21 1 0 1 23 24 2 2 3 22 23 0 0 1 H007 (3) 22 2 1 2 H011 (13) 22 0 0 1 H012 (10) 23 2 0 2 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /---------------- H010 | | | | /-------- H003 | /------16------15 | | | \-------- H005 | | | | /------17 \---------------- H000 | | | | /-------18 \------------------------ H013 | | | | /------19 \-------------------------------- H001 25 | | | /------20 \----------------------------------------- H014 | | | | /------21 \------------------------------------------------- H008 | | | | | \--------------------------------------------------------- H006 | | +------24 /-------- H007 | | /------22 | | | \-------- H011 | \-----------------------------------------------23 | \---------------- H012 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_21 --> H006 11 1 0.333 2 --> 1 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_23 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_25 --> H009 12 1 0.333 2 ==> 1 Tree number 73 (rooted using default outgroup) Branch lengths and linkages for tree #73 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 3 H007 (3) 20 1 0 2 19 20 0 0 1 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 H009 (11) 21 2 0 2 22 23 2 1 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 74 (rooted using default outgroup) Branch lengths and linkages for tree #74 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 3 19 20 0 0 1 H007 (3) 19 1 1 2 H011 (13) 19 1 0 1 H012 (10) 20 1 0 2 21 22 2 0 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 75 (rooted using default outgroup) Branch lengths and linkages for tree #75 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H001 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H013 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 76 (rooted using default outgroup) Branch lengths and linkages for tree #76 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H013 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 77 (rooted using default outgroup) Branch lengths and linkages for tree #77 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H001 (7) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 0 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 1 0 2 21 22 0 0 1 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 23 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H001 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H013 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 6 1 1.000 1 ==> 2 7 1 1.000 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H001 1 1 0.333 2 ==> 1 2 1 0.333 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.333 1 ==> 2 2 1 0.333 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 78 (rooted using default outgroup) Branch lengths and linkages for tree #78 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 20 24 0 0 1 18 20 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 19 20 2 1 2 H008 (4) 19 1 0 1 H006 (12) 19 0 0 1 23 24 0 0 1 22 23 2 2 3 H007 (3) 22 1 0 2 21 22 0 0 1 H012 (10) 21 1 1 2 H011 (13) 21 1 0 1 H009 (11) 23 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | 24 /----------18 \------------------------------------ H001 | | | | | \------------------------------------------------- H014 +----------20 | | /------------ H008 | \-----------------------------------------------19 | \------------ H006 | | /------------------------ H007 | | | /----------22 /------------ H012 | | \----------21 \-----------------------------------23 \------------ H011 | \------------------------------------ H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_20 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_20 --> node_19 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_19 --> H008 9 1 0.500 1 --> 2 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_22 --> H007 12 1 0.333 2 --> 1 node_21 --> H012 11 1 0.500 2 ==> 1 node_21 --> H011 13 1 0.333 0 --> 1 node_23 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 79 (rooted using default outgroup) Branch lengths and linkages for tree #79 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 22 23 0 0 1 19 22 1 1 1 18 19 1 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 H008 (4) 19 1 0 1 21 22 2 2 3 20 21 0 0 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 2 0 2 H006 (12) 22 1 0 1 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | +--------------------- H013 | | | /--------16 /---------- H003 | | +---------15 | | | \---------- H005 | /---------17 | | | | \--------------------- H000 | | | | /--------18 \------------------------------- H001 23 | | | /---------19 \------------------------------------------ H014 | | | | | \---------------------------------------------------- H008 | | | | /---------- H007 +--------22 /---------20 | | | \---------- H011 | +----------------------------------------21 | | \--------------------- H012 | | | \--------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_19 9 1 1.000 1 ==> 2 node_19 --> node_18 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_19 --> H008 11 1 0.333 2 --> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_22 --> H006 11 1 0.333 2 --> 1 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 80 (rooted using default outgroup) Branch lengths and linkages for tree #80 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 18 23 2 1 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 1 1 1 21 22 0 0 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H006 (12) 21 0 0 0 H008 (4) 22 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | +------------------------ H013 | | | /----------16 /------------ H003 | | +----------15 | | | \------------ H005 | /-----------17 | | | | \------------------------ H000 | | | | /----------18 \------------------------------------ H001 24 | | | | \------------------------------------------------- H014 | | | | /------------ H007 | | /----------19 +----------23 | \------------ H011 | | /----------20 | | | \------------------------ H012 | | /-----------21 | | | \------------------------------------ H006 | \----------22 | \------------------------------------------------- H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_23 --> node_22 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 --> 2 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 81 (rooted using default outgroup) Branch lengths and linkages for tree #81 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 22 23 0 0 1 20 22 2 2 3 19 20 0 0 1 H007 (3) 19 1 1 2 H011 (13) 19 1 0 1 H012 (10) 20 1 0 2 21 22 2 0 2 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 23 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 +---------------------------22 | | /--------------- H008 | \---------------------------21 | \--------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_22 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_20 --> H012 11 1 0.500 2 --> 1 node_22 --> node_21 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_21 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 82 (rooted using default outgroup) Branch lengths and linkages for tree #82 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 21 25 0 0 1 19 21 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 20 21 2 1 2 H008 (4) 20 1 0 1 H006 (12) 20 0 0 1 24 25 0 0 1 23 24 2 2 3 H007 (3) 23 1 0 2 22 23 0 0 1 H012 (10) 22 1 1 2 H011 (13) 22 1 0 1 H009 (11) 24 2 0 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | 25 /---------19 \------------------------------------------ H001 | | | | | \---------------------------------------------------- H014 +--------21 | | /---------- H008 | \---------------------------------------------------20 | \---------- H006 | | /--------------------- H007 | | | /--------23 /---------- H012 | | \---------22 \----------------------------------------24 \---------- H011 | \------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_21 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_21 --> node_20 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_20 --> H008 9 1 0.500 1 --> 2 node_24 --> node_23 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_23 --> H007 12 1 0.333 2 --> 1 node_22 --> H012 11 1 0.500 2 ==> 1 node_22 --> H011 13 1 0.333 0 --> 1 node_24 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 Tree number 83 (rooted using default outgroup) Branch lengths and linkages for tree #83 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 18 23 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 23 0 0 1 20 21 2 2 3 H007 (3) 20 1 0 2 19 20 0 0 1 H012 (10) 19 1 1 2 H011 (13) 19 1 0 1 H009 (11) 21 2 0 2 22 23 2 1 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 23 | | \---------------------------------------------------------- H014 | | /----------------------------- H007 | | | /-------------20 /--------------- H012 | | \------------19 +---------------------------21 \--------------- H011 | | | \-------------------------------------------- H009 | | /--------------- H008 \--------------------------------------------------------22 \--------------- H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 --> 1 node_19 --> H012 11 1 0.500 2 ==> 1 node_19 --> H011 13 1 0.333 0 --> 1 node_21 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_23 --> node_22 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 Tree number 84 (rooted using default outgroup) Branch lengths and linkages for tree #84 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 23 0 0 0 19 23 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 23 1 1 1 21 22 2 2 3 20 21 1 1 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 1 0 1 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 23 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 23 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 | | +-----------------------------------22------------------------------------ H008 | | | \------------------------------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_22 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 13 1 0.333 1 --> 0 node_22 --> H008 9 1 0.500 1 ==> 2 node_23 --> H009 12 1 0.333 2 ==> 1 Tree number 85 (rooted using default outgroup) Branch lengths and linkages for tree #85 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 22 0 0 0 18 22 2 2 3 17 18 3 3 4 16 17 2 2 3 H010 (2) 16 1 1 1 H013 (6) 16 2 2 2 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H001 (7) 17 0 0 0 H014 (5) 18 0 0 0 21 22 1 1 1 20 21 2 2 3 19 20 1 1 1 H007 (3) 19 2 1 2 H011 (13) 19 0 0 1 H012 (10) 20 1 0 1 H008 (4) 21 1 1 1 H006 (12) 21 0 0 0 H009 (11) 22 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /----------------------------- H010 | | | +----------------------------- H013 | | | /-------------16 /--------------- H003 | | +------------15 | | | \--------------- H005 | /------------17 | | | | \----------------------------- H000 | | | +-------------18 \-------------------------------------------- H001 22 | | \---------------------------------------------------------- H014 | | /--------------- H007 | /------------19 | | \--------------- H011 | /-------------20 | | \----------------------------- H012 | | +---------------------------21-------------------------------------------- H008 | | | \-------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_22 --> node_18 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_18 --> node_17 6 1 0.500 1 ==> 2 7 1 0.500 1 ==> 2 8 1 1.000 1 ==> 2 node_17 --> node_16 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> H013 6 1 0.500 2 ==> 1 7 1 0.500 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_22 --> node_21 11 1 0.500 2 ==> 1 node_21 --> node_20 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> node_19 11 1 0.500 1 ==> 2 node_19 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_20 --> H012 13 1 0.333 1 --> 0 node_21 --> H008 9 1 0.500 1 ==> 2 node_22 --> H009 12 1 0.333 2 ==> 1 Tree number 86 (rooted using default outgroup) Branch lengths and linkages for tree #86 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 22 24 0 0 1 21 22 2 2 3 H007 (3) 21 1 0 2 20 21 0 0 1 H012 (10) 20 1 1 2 H011 (13) 20 1 0 1 H009 (11) 22 2 0 2 23 24 2 1 2 H008 (4) 23 1 1 1 H006 (12) 23 0 0 0 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------------------ H007 | | | /----------21 /------------ H012 | | \----------20 +-----------------------------------22 \------------ H011 | | | \------------------------------------ H009 | | /------------ H008 \-----------------------------------------------------------23 \------------ H006 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 --> 1 node_20 --> H012 11 1 0.500 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_22 --> H009 12 1 0.333 2 --> 1 13 1 0.333 0 --> 1 node_24 --> node_23 11 1 0.500 2 ==> 1 13 1 0.333 0 --> 1 node_23 --> H008 9 1 0.500 1 ==> 2 Tree number 87 (rooted using default outgroup) Branch lengths and linkages for tree #87 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 19 24 2 2 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 0 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 0 0 1 21 23 2 2 3 20 21 0 0 1 H007 (3) 20 1 1 2 H011 (13) 20 1 0 1 H012 (10) 21 1 0 2 22 23 2 0 2 H008 (4) 22 1 1 1 H006 (12) 22 0 0 0 H009 (11) 24 2 1 2 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------------ H010 | | | | /------------ H003 | /----------16----------15 | | | \------------ H005 | | | | /-----------17 \------------------------ H000 | | | | /----------18 \------------------------------------ H013 | | | +----------19 \------------------------------------------------- H001 24 | | \------------------------------------------------------------- H014 | | /------------ H007 | /----------20 | | \------------ H011 | /----------21 | | \------------------------ H012 +-----------------------------------23 | | /------------ H008 | \----------------------22 | \------------ H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 ==> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_23 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 node_20 --> H011 13 1 0.333 0 --> 1 node_21 --> H012 11 1 0.500 2 --> 1 node_23 --> node_22 11 1 0.500 2 --> 1 13 1 0.333 0 --> 1 node_22 --> H008 9 1 0.500 1 ==> 2 node_24 --> H009 12 1 0.333 2 ==> 1 13 1 0.333 0 --> 1 Tree number 88 (rooted using default outgroup) Branch lengths and linkages for tree #88 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 24 0 0 0 23 24 0 0 1 20 23 1 1 1 19 20 1 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 H008 (4) 20 1 0 1 22 23 2 2 3 21 22 0 0 1 H007 (3) 21 2 1 2 H011 (13) 21 0 0 1 H012 (10) 22 2 0 2 H006 (12) 23 1 0 1 H009 (11) 24 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /------------------ H010 | | | | /--------- H003 | /-------16-------15 | | | \--------- H005 | | | | /--------17 \------------------ H000 | | | | /-------18 \--------------------------- H013 | | | | /-------19 \------------------------------------- H001 24 | | | /-------20 \---------------------------------------------- H014 | | | | | \------------------------------------------------------- H008 | | | | /--------- H007 +-------23 /-------21 | | | \--------- H011 | +--------------------------------------------22 | | \------------------ H012 | | | \---------------------------------------------------------------- H006 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_23 --> node_20 9 1 1.000 1 ==> 2 node_20 --> node_19 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_20 --> H008 11 1 0.333 2 --> 1 node_23 --> node_22 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_22 --> H012 11 1 0.333 2 --> 1 13 1 0.333 1 --> 0 node_23 --> H006 11 1 0.333 2 --> 1 node_24 --> H009 12 1 0.333 2 ==> 1 Tree number 89 (rooted using default outgroup) Branch lengths and linkages for tree #89 (unrooted) Assigned Minimum Maximum Connected branch possible possible Node to node length length length ------------------------------------------------------------------------- H002 (1) 25 0 0 0 24 25 0 0 1 19 24 2 1 3 18 19 1 1 4 17 18 2 2 3 16 17 2 0 3 H010 (2) 16 1 1 1 15 16 1 1 1 H003 (8) 15 1 1 1 H005 (9) 15 1 1 1 H000 (14) 16 1 0 1 H013 (6) 17 0 0 2 H001 (7) 18 2 0 2 H014 (5) 19 0 0 0 23 24 1 1 1 22 23 0 0 1 21 22 2 2 3 20 21 1 1 1 H007 (3) 20 2 1 2 H011 (13) 20 0 0 1 H012 (10) 21 1 0 1 H006 (12) 22 0 0 0 H008 (4) 23 1 0 1 H009 (11) 25 1 1 1 ------------------------------------------------------------------------- Sum 23 Tree length = 23 Consistency index (CI) = 0.5652 Homoplasy index (HI) = 0.4348 CI excluding uninformative characters = 0.5238 HI excluding uninformative characters = 0.4762 Retention index (RI) = 0.7561 Rescaled consistency index (RC) = 0.4274 /------------------------------------------------------------------------- H002 | | /--------------------- H010 | | | | /---------- H003 | /--------16---------15 | | | \---------- H005 | | | | /---------17 \--------------------- H000 | | | | /--------18 \------------------------------- H013 | | | | /---------19 \------------------------------------------ H001 25 | | | | \---------------------------------------------------- H014 | | | | /---------- H007 | | /---------20 +--------24 | \---------- H011 | | /--------21 | | | \--------------------- H012 | | /---------22 | | | \------------------------------- H006 | \-------------------23 | \------------------------------------------ H008 | \------------------------------------------------------------------------- H009 Apomorphy lists: Branch Character Steps CI Change -------------------------------------------------------- node_24 --> node_19 9 1 0.500 1 --> 2 10 1 1.000 1 ==> 2 node_19 --> node_18 8 1 1.000 1 ==> 2 node_18 --> node_17 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_17 --> node_16 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_16 --> H010 5 1 1.000 2 ==> 1 node_16 --> node_15 3 1 1.000 2 ==> 1 node_15 --> H003 4 1 1.000 2 ==> 1 node_15 --> H005 12 1 0.333 2 ==> 1 node_16 --> H000 13 1 0.333 1 --> 0 node_18 --> H001 6 1 0.500 1 --> 2 7 1 0.500 1 --> 2 node_24 --> node_23 11 1 0.500 2 ==> 1 node_22 --> node_21 1 1 0.500 1 ==> 2 2 1 0.500 1 ==> 2 node_21 --> node_20 11 1 0.500 1 ==> 2 node_20 --> H007 12 1 0.333 2 ==> 1 13 1 0.333 1 --> 0 node_21 --> H012 13 1 0.333 1 --> 0 node_23 --> H008 9 1 0.500 1 --> 2 node_25 --> H009 12 1 0.333 2 ==> 1 ALTree-v1.3.2/test/paup/unrooted_present/localisation/test.tree000066400000000000000000000255501412112337500246710ustar00rootroot00000000000000#NEXUS Begin trees; [Treefile saved Tue Jan 10 21:25:45 2006] [! >Data file = /home/cbardel/recherche/logiciel/altree/test/paup/unrooted_present/localisation/et_caco.paup >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 1 character is excluded > Of the remaining 12 included characters: > All characters are of type 'unord' > All characters have equal weight > 2 characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 10 > Starting tree(s) obtained via stepwise addition > Addition sequence: simple (reference taxon = H002) > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > 'MaxTrees' setting = 2000 (will not be increased) > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 90406 > Score of best tree(s) found = 20 > Number of trees retained = 89 > Time used = 1 sec (CPU time = 0.12 sec) ] tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H014),H009,H006)); tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H014),H006),H009)); tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H014),H006),H009)); tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),((H008,H014),H006)),H009)); tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H014)),H009,H006)); tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H008,H014),H009,H006)); tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H006),H009)); tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H014),H006))); tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H006),H014),H009)); tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014)),H009)); tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H006),H014,H009)); tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_14 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_15 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(H007,H012,H011),H009,H006)); tree PAUP_16 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_17 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_18 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H009,H006)); tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_21 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_22 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_24 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_25 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),((H008,H006),H014)),H009)); tree PAUP_26 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006),H009)); tree PAUP_27 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_28 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_29 = [&U] (H002,((((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),H008),H014),H009)); tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014),H009)); tree PAUP_31 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H006)),H014,H009)); tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),(H008,H006)),H009)); tree PAUP_33 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_34 = [&U] (H002,(((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_35 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H014),H006)); tree PAUP_36 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H006),H014),H009)); tree PAUP_37 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H007,H012,H011),(H008,H006),H009)); tree PAUP_38 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),H008,H006),H009)); tree PAUP_39 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H012,H011),H007),H009),(H008,H006))); tree PAUP_40 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_41 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_42 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_43 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006)),H009)); tree PAUP_44 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H006),H014)); tree PAUP_45 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H006),H014))); tree PAUP_46 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H008,H006),H014,H009)); tree PAUP_48 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_49 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_50 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_51 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009)); tree PAUP_52 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_53 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),(H007,H012,H011),H009)); tree PAUP_54 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009)); tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_57 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_58 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_59 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_60 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_61 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011),(H008,H006),H009)); tree PAUP_62 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,(H012,H011)),H009),H006)); tree PAUP_63 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006),H009)); tree PAUP_64 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_65 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_66 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_67 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_68 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_69 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009))); tree PAUP_70 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_71 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009)); tree PAUP_72 = [&U] (H002,((((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,H011),H012)),H009)); tree PAUP_73 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_74 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_75 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_76 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_77 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_78 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_79 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),((((H007,H011),H012),H006),H008)),H009)); tree PAUP_81 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_82 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009))); tree PAUP_83 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_84 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_85 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),H008,H006),H009)); tree PAUP_86 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006))); tree PAUP_87 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009)); tree PAUP_88 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,H011),H012),H006),H009)); tree PAUP_89 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009)); End; ALTree-v1.3.2/test/phylip/000077500000000000000000000000001412112337500153025ustar00rootroot00000000000000ALTree-v1.3.2/test/phylip/ancestor_absent/000077500000000000000000000000001412112337500204545ustar00rootroot00000000000000ALTree-v1.3.2/test/phylip/ancestor_absent/association/000077500000000000000000000000001412112337500227705ustar00rootroot00000000000000ALTree-v1.3.2/test/phylip/ancestor_absent/association/1_trio_phy.asso000066400000000000000000000171451412112337500257440ustar00rootroot00000000000000 /----* H030 (LEVEL: 1) case/control:1/1 | Site: 9 Sens: 0-->1 |----* H006 (LEVEL: 1) case/control:23/19 | Site: 2 Sens: 1-->0 -----* 10+(27)+(1) (LEVEL: 0) case/control:200/200 | | [0] ddl=3 chi2=0.52 p_value_chi2=0.86 | [1] ddl=6 chi2=4.29 p_value_chi2=0.674 | [2] ddl=9 chi2=15.63 p_value_chi2=0.041 | [3] ddl=15 chi2=22.00 p_value_chi2=0.068 | [4] ddl=18 chi2=31.34 p_value_chi2=0.011 | [5] ddl=19 chi2=31.42 p_value_chi2=0.02 | [6] ddl=20 chi2=39.94 p_value_chi2=0.001 | [7] ddl=21 chi2=50.63 p_value_chi2=0 | [8] ddl=23 chi2=52.46 p_value_chi2=0 | [9] ddl=24 chi2=52.99 p_value_chi2=0 | [10] ddl=25 chi2=53.21 p_value_chi2=0.001 | [11] ddl=28 chi2=59.22 p_value_chi2=0 | [12] ddl=31 chi2=61.68 p_value_chi2=0 | [13] ddl=34 chi2=68.34 p_value_chi2=0 | /----* H035 (LEVEL: 2) case/control:1/0 | | Site: 10 Sens: 1-->0 | |----* H007 (LEVEL: 2) case/control:25/36 |----* 17+(22) (LEVEL: 1) case/control:54/58 | | Site: 4 Sens: 0-->1 | | /----* H023 (LEVEL: 3) case/control:1/5 | | | /----* H021 (LEVEL: 5) case/control:11/2 | | | | Site: 1 Sens: 1-->0 | | | | Site: 5 Sens: 0-->1 | | | /----* 26 (LEVEL: 4) case/control:16/12 | | | | | Site: 8 Sens: 0-->1 | | | | \----* H009 (LEVEL: 5) case/control:5/10 | | | |----* H012 (LEVEL: 4) case/control:1/2 | | |----* 16+(29) (LEVEL: 3) case/control:26/17 | | | | Site: 6 Sens: 1-->0 | | | \----* H002 (LEVEL: 4) case/control:9/3 | | | Site: 5 Sens: 0-->1 | \----* 6+(8) (LEVEL: 2) case/control:28/22 | | Site: 3 Sens: 0-->1 | \----* H026 (LEVEL: 3) case/control:1/0 | Site: 1 Sens: 1-->0 | /----* H025 (LEVEL: 2) case/control:2/3 \----* 25 (LEVEL: 1) case/control:122/122 | Site: 1 Sens: 1-->0 | /----* H004 (LEVEL: 3) case/control:11/2 \----* 2 (LEVEL: 2) case/control:120/119 | Site: 5 Sens: 0-->1 | /----* H005 (LEVEL: 4) case/control:2/2 | | Site: 10 Sens: 1-->0 | |----* H008 (LEVEL: 4) case/control:28/19 | |----* H031 (LEVEL: 4) case/control:1/0 | | Site: 8 Sens: 0-->1 \----* 19+(30)+(7+(28)) (LEVEL: 3) case/control:109/117 | Site: 6 Sens: 1-->0 | /----* H032 (LEVEL: 5) case/control:0/1 | | Site: 7 Sens: 0-->1 |----* 24 (LEVEL: 4) case/control:2/3 | | Site: 4 Sens: 0-->1 | \----* H016 (LEVEL: 5) case/control:2/2 | /----* H024 (LEVEL: 5) case/control:1/0 \----* 14 (LEVEL: 4) case/control:76/93 | Site: 9 Sens: 0-->1 | /----* H013 (LEVEL: 7) case/control:15/5 | /----* 23 (LEVEL: 6) case/control:72/90 | | | Site: 10 Sens: 1-->0 | | | /----* H022 (LEVEL: 8) case/control:9/1 | | \----* 32 (LEVEL: 7) case/control:57/85 | | | Site: 6 Sens: 0-->1 | | | /----* H029 (LEVEL: 9) case/control:1/3 | | | | Site: 10 Sens: 0-->1 | | | |----* H034 (LEVEL: 9) case/control:1/0 | | \----* 4+(20) (LEVEL: 8) case/control:48/84 | | | Site: 5 Sens: 1-->0 | | | /----* H033 (LEVEL: 10) case/control:0/1 | | \----* 18 (LEVEL: 9) case/control:46/81 | | | Site: 4 Sens: 0-->1 | | | /----* H010 (LEVEL: 11) case/control:1/3 | | \----* 12 (LEVEL: 10) case/control:46/80 | | | Site: 1 Sens: 0-->1 | | | /----* H011 (LEVEL: 12) case/control:3/8 | | | |----* H003 (LEVEL: 12) case/control:2/0 | | | | Site: 5 Sens: 0-->1 | | \----* 21+(31)+(5) (LEVEL: 11) case/control:45/77 | | | Site: 10 Sens: 0-->1 | | | /----* H014 (LEVEL: 13) case/control:2/3 | | | | Site: 1 Sens: 1-->0 | | | |----* H017 (LEVEL: 13) case/control:0/8 | | |----* 33+(15) (LEVEL: 12) case/control:3/13 | | | | Site: 3 Sens: 0-->1 | | | \----* H027 (LEVEL: 13) case/control:1/2 | | | Site: 6 Sens: 1-->0 | | | Site: 10 Sens: 1-->0 | | | /----* H018 (LEVEL: 13) case/control:2/2 | | \----* 34 (LEVEL: 12) case/control:37/56 | | | Site: 4 Sens: 1-->0 | | | /----* H028 (LEVEL: 14) case/control:4/0 | | | | Site: 8 Sens: 1-->0 | | | |----* H001 (LEVEL: 14) case/control:24/39 | | \----* 11+(13)+(9) (LEVEL: 13) case/control:35/54 | | | Site: 2 Sens: 1-->0 | | |----* H015 (LEVEL: 14) case/control:2/6 | | | Site: 9 Sens: 1-->0 | | \----* H020 (LEVEL: 14) case/control:5/9 | | Site: 10 Sens: 1-->0 \----* 3 (LEVEL: 5) case/control:75/93 | Site: 8 Sens: 0-->1 | Site: 7 Sens: 0-->1 \----* H019 (LEVEL: 6) case/control:3/3 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0.5 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 level 10 p-value (non corrected) 0 level 11 p-value (non corrected) 0 level 12 p-value (non corrected) 0 level 13 p-value (non corrected) 0 level 14 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 ALTree-v1.3.2/test/phylip/ancestor_absent/association/ancestors000066400000000000000000000000131412112337500247060ustar00rootroot000000000000001100010001 ALTree-v1.3.2/test/phylip/ancestor_absent/association/nb_cas_controls.txt000066400000000000000000000010151412112337500266760ustar00rootroot00000000000000H019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 ALTree-v1.3.2/test/phylip/ancestor_absent/association/outfile000066400000000000000000035173741412112337500244060ustar00rootroot00000000000000 Mixed parsimony algorithm, version 3.69 Wagner parsimony method 100 trees in all found +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +-----6 +----26 ! ! ! ! +--H009 ! ! ! +-16 ! ! ! ! ! +--H012 +-----1 +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H024 ! ! +----------------------------------------------------14 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +----30 ! ! ! +--H008 +--2 +-------------------------------------------------------19 ! ! ! +--H032 ! ! +----24 ! ! +--H016 ! ! +--7 +-----------------------------------------------------H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----------14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--------H005 ! ! +-------------------------------------------------------30 +--2 ! ! +-----H008 ! ! +-19 ! ! ! +--H032 ! ! +-24 ! ! +--H016 +--7 ! +-----------------------------------------------------H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----------14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--------H008 ! ! +-------------------------------------------------------19 +--2 ! ! +-----H005 ! ! +-30 ! ! ! +--H032 ! ! +-24 ! ! +--H016 +--7 ! +-----------------------------------------------------H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----------14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 19 no ..... ..... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! ! ! +--H032 +-19 +-------------------------------------------------------24 ! ! +--H016 ! ! ! ! +-----------------------------------------------------H024 +-----7 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! +----34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +--H035 ! ! ! +-------------22 -10 ! ! ! +--H007 ! ! +-17 ! ! ! +-----------H023 ! ! ! ! ! ! +-----6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +-----H032 ! ! +----------------------------------------------------24 ! ! ! ! +--H021 +-30 ! +-26 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +-----------------------H030 ! ! ! +-------------------------------------------------------------------------27 +--------------------H035 ! ! ! ! -10 ! +-22 +-----------------H007 ! ! ! ! ! ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H009 ! ! +--6 +-16 ! ! ! ! ! +-----H012 +--1 ! ! +-29 ! +--8 ! +--H021 ! ! +-26 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +-------------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 26 yes ....1 ..... 26 H021 yes 0.... ..1.. 26 H002 no ..... ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--------------------H035 ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 -10 ! ! ! ! ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 ! ! ! +-16 +-----1 ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------------------------------------------------------------------------------------H030 ! ! -10 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-27 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +-----------------------------------------------------------------H008 +--2 ! ! ! +--H005 ! ! +----------------------------------------------------------30 +-19 ! +--H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +-----7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 30 no ..... ..... 30 H005 yes ..... ....0 30 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H005 ! ! ! ! +-----------------------------------------------------------H024 +-30 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H005 ! ! ! ! +-----------------------------------------------------------H024 +-30 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H017 +--3 ! +-------------15 ! ! ! ! +--H014 ! ! ! +-33 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! +-21 +-----------------------H011 ! ! ! ! ! ! ! ! +-----H017 +--3 +-31 +-------------15 ! ! ! ! +--H014 ! ! ! +-33 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +--------H011 ! ! +-21 +-------------31 ! ! ! ! ! +-----H017 +--3 ! ! +-15 ! ! ! ! +--H014 ! +--5 +-33 ! ! +--H027 ! ! ! ! +-----------H018 ! +----------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 31 no ..... ..... 31 H011 no ..... ..... 31 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H017 +--3 +-21 +-------------15 ! ! ! ! +--H014 ! ! ! +-33 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +--H014 +--3 +-21 +-33 ! ! +-------------15 +--H017 ! ! ! ! ! +--5 +-----H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! +-30 +--------------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------------H024 +-19 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! +-------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! ! ! +--------------------------------------------------------------H024 +-19 ! ! ! +-----H005 ! ! +----------------------------------------------------30 ! ! ! ! +--H032 +-14 ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +--H032 +-14 +-------------------------------------------------------24 ! ! +--H016 ! ! ! ! +-----------------------------------------------------H005 +--7 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----30 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 30 no ..... ..... 30 H005 yes ..... ....0 30 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +-----H012 ! ! +--6 +-29 ! ! ! ! ! +--H021 ! ! ! +-16 +-26 +--1 ! ! ! +--H009 ! +--8 ! ! ! +--------H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +-----------------------H030 ! ! ! +-------------------------------------------------------------------------27 +--------------------H035 ! ! ! ! -10 ! +-22 +-----------------H007 ! ! ! ! ! ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 +--1 ! +-16 ! ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +-------------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H035 ! ! ! +----------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--H021 ! ! +--6 +----26 ! ! ! ! +--H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +----29 ! ! +--H002 ! ! ! +-----------H026 ! ! +--------------------------------------------------------------------------H030 ! ! +----------------------27 +-----------------------------------------------------------------------H025 ! ! +-25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! +-19 +--------------------------------------------------------------H024 ! ! ! ! +-----------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +----------------------------------------------------24 +-30 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H032 ! ! +-------------------------------------------------------24 ! ! ! +--H016 +-30 ! ! ! +--H031 ! ! +-------------------------------------------------28 ! ! ! +--H021 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----26 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +-----3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..... ..1.. 26 28 no ..... ..... 28 H031 no ..... ..... 28 H021 yes ..11. ..... 26 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! +-14 +--------------------------------------------------------------H005 ! ! ! ! +--H032 +-30 +-------------------------------------------------------24 ! ! +--H016 ! ! ! ! +-----------------------------------------------------H021 +--7 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----26 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 maybe ...?. ..... 7 24 maybe ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..... ..1.. 26 H021 yes ..11. ..... 26 28 maybe ...0. ..... 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! +-14 +--------------------------------------------------------------H005 ! ! ! ! +--H032 +-30 +-------------------------------------------------------24 ! ! +--H016 ! ! ! ! +-----------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------------H021 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-26 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 26 no ..... ..... 26 H021 yes ..11. ..... 26 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H035 ! ! ! ! -10 ! +-22 +--------------H007 ! ! ! ! ! ! +-17 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +-----H021 ! ! +----------------------------------------------------26 ! ! ! ! +--H032 +-30 ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! ! ! +-----H017 ! ! +-21 +----------------15 ! ! ! ! ! +--H014 +--3 ! ! +-33 ! +--5 +--H027 ! ! ! ! +--------------H011 ! +-------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 maybe ..... ..?.. 7 26 yes ...1. ..... 26 H021 yes ..1.. ..1.. 26 24 maybe ..... ..0.. 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 maybe ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! +----34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! +--5 +--H027 +--3 ! ! ! +-----------------H003 ! +-------21 ! ! +--------------H011 ! +-31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! +--5 +--H027 +--3 ! ! ! +-----------------H011 ! +-------31 ! ! +--------------H003 ! +-21 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! ! ! +-----H014 ! ! +-31 +----------------33 ! ! ! ! ! +--H017 +--3 ! ! +-15 ! +--5 +--H027 ! ! ! ! +--------------H003 ! +-------21 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 +-------------------------------------------------------------------------17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +-----6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 +--1 +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H007 ! ! ! ! ! +-------------------------------------------------------------------------17 +-----------------H035 ! ! ! ! ! +-10 ! +-22 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--------H003 ! ! +-12 +----------------21 ! ! ! ! ! +-----H017 ! ! ! ! +-15 ! ! ! ! ! +--H014 +--3 +--5 +-33 ! ! +--H027 ! ! ! ! +--------------H011 ! +----------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! ! ! +--------H003 ! ! +-31 +-------------21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! ! ! ! +--H017 ! +--5 +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +----------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 5 no ..... ..... 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--------H003 ! ! +-12 +----------------21 ! ! ! ! ! +-----H014 ! ! ! ! +-33 ! ! ! ! ! +--H017 +--3 +--5 +-15 ! ! +--H027 ! ! ! ! +--------------H011 ! +----------31 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 31 no ..... ..... 31 H011 no ..... ..... 31 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H033 +-------28 ! ! ! ! ! +-18 +--------------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +----------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--H011 +--3 ! +----------------31 ! ! ! +--H003 ! ! ! ! +-------21 +--H018 ! ! +----------34 ! ! ! +--H029 ! +----20 ! ! +--------H028 ! +----13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 20 yes ...0. ..... 20 34 no ..... ..... 34 H018 no ..... ..... 34 H029 yes 0.... ..... 20 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H033 +-------28 ! ! ! ! ! +-18 +--------------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +----------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--H011 +--3 ! +----------------31 ! ! ! +--H003 ! +-------21 ! ! +--------------H029 ! +----20 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 20 yes ...0. ..... 20 H029 yes 0.... ..... 20 34 no ..... ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H033 +-------28 ! ! ! ! ! +-18 +--------------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +----------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--H011 +--3 ! +----------------31 ! ! ! +--H003 ! +-------21 ! ! +--------------H018 ! +----34 ! ! +-----------H029 ! +-20 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 20 no ..... ..... 20 H029 yes 0.... ..... 20 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------H030 ! ! ! +----------------------------------------------------------------------------27 +-----------------H007 ! ! ! ! -10 ! +-17 +--------------H035 ! ! ! ! ! ! +-22 +-----------H023 ! ! ! ! ! ! +--6 +-----H009 ! ! ! +-16 +--1 ! ! ! +--H012 ! +--8 +-29 ! ! +--H002 ! ! ! +--------H026 ! ! +--------------------------------------------------------------------------H025 ! ! +----------------------25 +-----------------------------------------------------------------------H004 ! ! +--2 +--------------------------------------------------------------------H008 ! ! +-19 +-----------------------------------------------------------------H024 ! ! ! ! +--------------------------------------------------------------H005 +-14 ! ! ! +--H021 ! ! +-26 ! ! +----------------------------------------------------24 +--H032 +-30 ! ! ! ! +-----H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H029 +-------28 ! ! ! ! ! +-20 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H017 ! ! +-12 +-------------------15 ! ! ! ! ! +--H014 ! ! ! ! +-33 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! +----34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 24 yes ...1. ..... 24 26 no ..... ..... 26 H021 yes ..1.. ..1.. 26 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! ! +----26 ! +-------------------------------------------------------------------------17 ! +--H009 ! ! ! +-16 ! ! ! ! ! +--H012 ! ! ! +--8 +----29 ! ! ! ! ! +--H002 ! ! +-----6 ! +-----1 ! +-----------H023 ! ! ! +--------------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! ! ! +--H027 ! +-----5 ! ! +-----------H018 ! ! ! ! ! ! +--H028 ! +-------34 +-13 ! ! +-11 +--H001 ! ! ! ! ! +--9 +-----H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 9 yes .0... ..... 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! ! +----26 ! +-------------------------------------------------------------------------17 ! +--H009 ! ! ! +-16 ! ! ! ! ! +--H012 ! ! ! +--8 +----29 ! ! ! ! ! +--H002 ! ! +-----6 ! +-----1 ! +-----------H023 ! ! ! +--------------H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 8 no ..... ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--------H012 +-10 ! ! ! +-------------------------------------------------------------------------17 +-29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! ! +--8 ! ! ! ! ! ! +-----H002 ! ! +-----6 ! +--1 ! +-----------H023 ! ! ! +--------------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--------H015 ! ! ! ! +--9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! ! ! ! +-------21 +-----------H018 ! ! ! ! ! ! +--H028 ! +----34 +-13 ! ! +-11 +--H001 ! ! ! ! ! +--9 +-----H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 9 yes .0... ..... 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------25 ! +-----H031 ! ! +----28 ! ! ! ! +--H005 ! ! ! +-30 +--2 +----------------------------------------------------19 +--H008 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------25 ! +-----------H031 ! ! ! ! ! +----------------------------------------------------28 +--H005 ! ! ! ! +----30 +--2 ! ! ! +--H008 ! ! +-19 ! ! ! +--H032 ! ! +----24 ! ! +--H016 ! ! +--7 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------25 ! +--H005 ! ! +-------30 ! ! ! +--H008 ! ! +----------------------------------------------------19 +--2 ! ! +-----H031 ! ! +----28 ! ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H032 ! ! +-------------------------------------------------------------24 +--2 ! +--H016 ! ! ! ! +--H005 ! ! +-30 +--7 +----------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! +----14 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +-----------------------------------------------------------H024 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----14 ! +--H008 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +-19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +--H032 ! +-------------------------------------------------------------24 ! ! +--H016 +--7 ! +-----------------------------------------------------------H024 ! ! +----14 +--------------------------------------------------------H005 ! ! ! ! +-----------------------------------------------------H008 +-30 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +-19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +--H032 ! +-------------------------------------------------------------24 ! ! +--H016 +--7 ! +-----------------------------------------------------------H024 ! ! +----14 +--------------------------------------------------------H008 ! ! ! ! +-----------------------------------------------------H005 +-19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +-30 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H003 ! ! ! ! ! ! +-21 +-----------------------H011 ! ! ! ! ! ! ! ! +-----H014 +--3 +-31 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +--2 ! +--H008 ! ! ! ! +-----H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! +-12 +--------------------------H011 ! ! ! ! ! ! +-31 +-----------------------H003 ! ! ! ! ! ! ! ! +-----H014 +--3 +-21 +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +--5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H008 ! ! ! ! +--------------------------------------------------------------H005 +-19 ! ! ! +-----H031 ! ! +----------------------------------------------------28 ! ! ! ! +--H032 +-30 ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! +--2 +-----------------------------------------------------------------H005 ! ! ! ! +--------------------------------------------------------------H008 +-30 ! ! ! +-----H031 ! ! +----------------------------------------------------28 ! ! ! ! +--H032 +-19 ! +-24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--7 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 7 no ..... ..... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--H021 ! +-------------------------------------------------------------------------17 +----26 ! ! ! ! +--H009 ! ! ! +----16 ! ! ! ! ! +--H012 ! ! ! ! +----29 ! ! +-----8 +--H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +--H011 ! ! ! ! +-------31 ! ! +-12 ! +--H003 ! ! ! +-------------21 ! ! ! ! ! +-----H014 +--3 ! ! +----33 ! ! ! ! +--H017 ! +--5 +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H003 ! ! ! ! +-------------21 ! ! +-12 ! ! +--------H011 ! ! ! ! +-31 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 ! ! ! +-----1 ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------25 ! ! ! +--H005 ! ! +-30 +--2 +----------------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--H032 +-14 +----------------------------------------------------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--------7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H001 ! +-11 ! ! +-----H028 ! +-13 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +-------------------------------------------------------------------------------------------------27 ! +--H006 ! ! +--H035 ! +----------------22 ! ! +--H007 ! ! -10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +-----1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H006 ! ! +--------------------------------------------------------------------------------------------------H030 ! ! -10 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-27 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +--1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--H035 ! ! +----------------22 ! ! ! +--H007 ! ! ! +-10 ! +--------H012 ! +-------------------------------------------------------------------------17 ! ! ! ! +----29 +--H021 ! ! ! ! ! +-26 ! ! ! ! +-16 +--H009 ! ! +-----8 ! ! ! ! +-----H002 +--1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H032 +--2 +-------------------------------------------------------------24 ! ! +--H016 ! ! ! ! +--H005 +--7 +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +-18 ! ! ! ! ! +-----------H011 ! ! ! ! +-------------31 ! ! +-12 ! ! +--------H003 ! ! ! ! +-21 ! ! ! ! ! +-----H014 +--3 ! ! +-33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! +-------------34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------------28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! +--4 +-----------------------------------H029 +-------------28 ! ! ! ! ! +-20 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +--H032 ! ! +-------------------------------------------------------------24 +--2 ! +--H016 ! ! ! ! +--H005 ! ! +-30 +--7 +----------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--------------------------------------------------H031 ! ! ! +----14 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +-------28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--H021 +-------------------------------------------------------------------------------17 +----26 ! ! ! +--H009 ! ! +----16 ! ! ! ! +--H012 ! ! ! +----29 ! +-----8 +--H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +-----H012 +-------------------------------------------------------------------------------17 +-29 ! ! ! ! +--H021 ! ! +----16 +-26 ! ! ! ! +--H009 ! ! ! ! ! +-----8 +--------H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--H021 +-------------------------------------------------------------------------------17 +----26 ! ! ! +--H009 ! ! +----16 ! ! ! ! +--H012 ! ! ! +----29 ! +-----8 +--H002 --1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------------H030 ! ! +----------------------27 +--------------------------------------------------------------------------H006 ! ! +-10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +-25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--H021 +-------------------------------------------------------------------------------17 +----26 ! ! ! +--H009 ! ! +----16 ! ! ! ! +--H012 ! ! ! +----29 ! +-----8 +--H002 --1 ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------------H006 ! ! +----------------------10 +--------------------------------------------------------------------------H030 ! ! +-27 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +-25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-30 +--2 +----------------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--H032 +-14 +----------------------------------------------------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--------7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-30 +--2 +----------------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--H032 +-14 +----------------------------------------------------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--------7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----28 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H035 +----------------22 ! +--H007 ! ! +--------H012 +-------------------------------------------------------------------------------17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! ! ! +-----H002 ! ! --1 ! +--H023 ! +-----------6 ! +--H026 ! ! +--H030 ! +-------------------------------------------------------------------------27 ! ! +--H006 ! ! +----------------------10 +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-30 +--2 +----------------------------------------------------------19 +--H008 ! ! ! ! ! +-----H024 ! ! ! ! +--H032 +-14 +----------------------------------------------------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--------7 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H029 ! ! ! +-32 +----------------------------------20 ! ! ! ! ! +--H034 +----28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! ! ! +-----------------------------H010 ! ! +----18 ! ! ! ! ! +--H011 ! ! ! ! +-------31 ! ! +-12 ! +--H003 ! ! ! +-------------21 ! ! ! ! ! +-----H014 +--3 ! ! +----33 ! ! ! ! +--H017 ! +--5 +-15 ! ! +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +----------------------27 ! +--H006 ! ! +--H035 +-------------------------------------------------------------------------10 +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--------H012 ! +----17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 ! +-----8 ! --1 ! +-----H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------------25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------H030 ! +-------------------------------------------------------------------------27 +-----------------------H006 ! ! ! ! ! ! +--H035 ! +-10 +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--------H012 ! +-17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 --1 +-----8 ! ! ! +-----H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------------25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------H006 ! +-------------------------------------------------------------------------10 +-----------------------H030 ! ! ! ! ! ! +--H035 ! +-27 +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--------H012 ! +-17 ! ! ! +----29 +--H021 ! ! ! ! +-26 ! ! ! +-16 +--H009 --1 +-----8 ! ! ! +-----H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 ! ! ! +----------------------------25 ! +--H005 ! ! +-30 ! ! +----19 +--H008 ! ! ! ! +--2 +----------------------------------------------------14 +-----H024 ! ! ! ! ! ! +--H032 ! ! +-------24 ! ! +--H016 ! ! ! ! +--------------------------------------------------H031 +--7 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H029 ! ! ! ! ! ! ! ! +-20 +-----------------------------------H034 +-------------28 ! ! ! ! ! +--4 +--------------------------------H033 ! ! ! ! ! ! +-18 +-----------------------------H010 ! ! ! ! ! ! ! ! +-----H014 ! ! +-12 +-------------------33 ! ! ! ! ! +--H017 ! ! ! ! +-15 ! ! ! ! +--H027 +--3 +--5 ! ! +--H011 ! ! +-------------31 ! ! ! +--H003 ! +-------21 ! ! +-----------H018 ! ! ! ! +----34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 14 no ..... ..... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 20 yes ....0 ..... 20 H029 yes ..... ....1 20 4 no ..... ..... 4 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 5 yes ..... ....1 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +----------------------27 ! +--H006 ! ! +--H035 +-------------------------------------------------------------------------10 +----------------22 ! ! ! +--H007 ! ! ! ! ! ! +--H021 ! +----17 +----26 ! ! ! +--H009 ! ! +----16 ! ! ! ! +--H012 ! ! ! +----29 --1 +-----8 +--H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------------25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +----------------------27 ! +--H006 ! +-------------------------------------------------------------------------10 +--------------------H007 ! ! ! ! ! ! +-----------------H035 ! +----17 ! ! ! ! +--H021 ! ! ! +----26 ! +-22 ! +--H009 ! ! +----16 ! ! ! ! +--H012 --1 ! ! +----29 ! +--8 +--H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------------25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 H007 no ..... ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--H030 +----------------------27 ! +--H006 ! +-------------------------------------------------------------------------10 +--------------------H035 ! ! ! ! ! ! +-----------------H007 ! +----22 ! ! ! ! +--H021 ! ! ! +----26 ! +-17 ! +--H009 ! ! +----16 ! ! ! ! +--H012 --1 ! ! +----29 ! +--8 +--H002 ! ! ! ! +--H023 ! +-----------6 ! +--H026 ! ! +-----------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------H004 +----------------------------25 ! ! ! +-----H031 ! ! +----------------------------------------------------------28 +--2 ! ! +--H032 ! ! +-24 ! ! +--H016 ! ! ! ! +--H005 +--7 +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--H029 ! ! ! ! +----------------------------------20 ! ! ! ! ! +--H034 +----14 ! +--4 ! ! ! +--------------------------------H033 ! ! ! ! ! ! +----18 +-----------------------------H010 ! ! ! ! ! ! ! ! +--H011 ! ! +-12 +----------------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +-----H014 +--3 ! +-------------33 ! ! ! ! +--H017 ! ! ! +-15 ! +-----5 +--H027 ! ! ! ! +-----------H018 ! ! ! ! +-------34 +--H028 ! ! +----13 ! ! ! +--H001 ! +-11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 8 yes ..1.. ..... 8 16 yes ..... 0.... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 no ..... ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H002 yes ....1 ..... 8 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 7 yes ..... 0.... 7 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 20 no ..... ..... 20 H029 yes ..... ....1 20 H034 no ..... ..... 4 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 21 yes ..... ....1 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 5 no ..... ..... 5 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 34 yes ...0. ..... 34 H018 no ..... ..... 34 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +-----------------------------------------------------------------------------------------------------H030 ! ! +--------------------------------------------------------------------------------------------------H006 ! ! -27 ! +--------------------H035 ! ! ! ! ! +-------------------------------------------------------------------------22 +-----------------H007 ! ! ! ! ! +-10 ! +-17 +--------------H023 ! ! ! ! ! ! ! ! +--------H012 ! ! +--6 ! ! ! ! +-29 +--H021 ! ! ! ! ! +-26 +--1 ! ! +-16 +--H009 ! +--8 ! ! ! +-----H002 ! ! ! +-----------H026 ! ! +-----------------------------------------------------------------------H025 ! ! +----------------------25 +--------------------------------------------------------------------H004 ! ! ! ! +--H005 +--2 +-------------------------------------------------------------30 ! ! +--H008 ! ! +-19 +-----------------------------------------------------------H024 ! ! ! ! +--H032 ! ! +----------------------------------------------------24 +----14 ! +--H016 ! ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +--7 ! ! ! ! ! +-----------------------------------------H022 ! ! ! ! ! ! +-23 ! +-----------------H033 ! ! ! ! ! +-18 ! ! ! ! ! ! ! +--------------H010 ! ! ! ! ! ! +-12 +----28 ! ! ! ! ! +-----------H011 ! ! +-32 ! +-31 ! ! ! ! ! +--------H003 ! ! ! +-----------------5 +-21 ! ! ! ! ! ! +-----H014 ! ! ! ! ! +-33 ! ! ! ! ! ! +--H017 ! ! ! ! ! +-15 ! ! +--4 ! +--H027 ! ! ! ! +--3 ! +--------------------H034 ! ! ! ! +--------------H029 ! +----------------------20 ! ! +-----------H018 ! +-34 ! ! +--------H028 ! +-13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 1 no ..... ..... 1 22 yes ...1. ..... 22 H035 yes ..... ....0 22 17 no ..... ..... 17 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 8 no ..... ..... 8 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 maybe ....? ..... 16 26 yes ..... ..1.. 26 H021 yes 0...1 ..... 26 H009 maybe ....0 ..... 16 H002 maybe ....1 ..... 8 H026 yes 0.... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 no ..... ..... 7 24 yes ...1. ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 28 yes ..... ..1.. 28 H031 no ..... ..... 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 31 yes ..... ....1 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 34 yes 1.... ..... 34 H018 no ..... ..... 34 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... ALTree-v1.3.2/test/phylip/ancestor_absent/association/outtree000066400000000000000000000616341412112337500244140ustar00rootroot00000000000000((H030,H006),(((H035,H007),(H023,(((H021,H009),(H012,H002)),H026))), (H025,(H004,((H005,H008),((H031,(H032,H016)),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H005,H008),((H024,(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019)))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,(((H005,H008),(H032,H016)),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019)))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H005,(H008,(H032,H016))),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019)))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H008,(H005,(H032,H016))),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019)))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H005,H008),((H032,H016),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019))))))))))[0.0100]; (H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))), (H025,(H004,((H032,H016),((H005,H008),(H024,(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001, (H015,H020))))))))))),H019))))))))))[0.0100]; (H006,((H030,(H007,(H035,(H023,((H009,(H012,H002)),H026))))),(H025, (H004,(H008,(H024,(H005,(((H021,H032),H016),(H031,((H013,(H022,((H029, H034),(H033,(H010,((H017,(H014,H027)),((H011,H003),(H018,(H028,(H001, (H015,H020))))))))))),H019))))))))))[0.0100]; (H006,((H030,((H035,H007),(H023,((H009,(H012,H002)),H026)))),(H025, (H004,(H008,(H024,(H005,(((H021,H032),H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H006,((H030,(H007,(H035,(H023,((H009,(H012,H002)),H026))))),(H025, (H004,(H008,(H024,(H005,(((H021,H032),H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H006,((H030,(H035,(H007,(H023,((H009,(H012,H002)),H026))))),(H025, (H004,(H008,(H024,(H005,((H032,(H021,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H006,((H030,(H035,(H007,(H023,((H009,(H012,(H021,H002))),H026))))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; ((H030,H006),((H035,(H007,(H023,(((H021,H009),(H012,H002)),H026)))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H006,(H030,((H035,(H007,(H023,(((H021,H009),(H012,H002)),H026)))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,(((H021,H009),(H012,H002)),H026)))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H008,((H005,H024),((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,((H005,H008),(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,((H005,H008),(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H011,(H003,((H014,(H017,H027)),(H018,(H028,(H001, (H015,H020))))))))))))),H019))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H008,(H024,(H005,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H008,(H005,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H008,(H005,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H011,(H003,((H014,(H017,H027)),(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H005,(H008,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H011,H003),((H017,(H014,H027)),(H018,(H028,(H001, (H015,H020)))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H005,(H008,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,(H011,((H017,(H014,H027)),(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H005,(H008,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001, (H015,H020))))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H005,(H008,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H003,((H011,(H017,(H014,H027))),(H018,(H028,(H001, (H015,H020)))))))))))),H019)))))))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,(H005,(H008,(H024,((H032,H016),(H031,((H013,(H022,(H029, (H034,(H033,(H010,(H011,(H003,((H017,(H014,H027)),(H018,(H028,(H001, 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(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019)))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H034, (H029,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019)))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,((H032,H016),(((H005,H008),H024),(H031,((H013,(H022,((H029, H034),(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),(((H021,H009),(H012,H002)),(H023,H026))),((H030,H006), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),(((H012,(H021,H009)),H002),(H023,H026))),((H030,H006), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),(((H021,H009),(H012,H002)),(H023,H026))),(H030,(H006, (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))))[0.0100]; (((H035,H007),(((H021,H009),(H012,H002)),(H023,H026))),(H006,(H030, (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,(((H005,H008),H024),((H032,H016),(H031,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,(((H005,H008),H024),((H032,H016),(H031,((H013,(H022,((H029, H034),(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020)))))))))),H019))))))))[0.0100]; (((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006), (H025,(H004,(((H005,H008),H024),((H032,H016),(H031,((H013,(H022,((H029, H034),(H033,(H010,(((H011,H003),(H014,(H017,H027))),(H018,((H028,H001), (H015,H020))))))))),H019))))))))[0.0100]; (((H030,H006),((H035,H007),((H012,((H021,H009),H002)),(H023,H026)))), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019))))))[0.0100]; ((H030,(H006,((H035,H007),((H012,((H021,H009),H002)),(H023,H026))))), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019))))))[0.0100]; ((H006,(H030,((H035,H007),((H012,((H021,H009),H002)),(H023,H026))))), (H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029, (H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001), (H015,H020))))))))))),H019))))))[0.0100]; (((H030,H006),((H035,H007),(((H021,H009),(H012,H002)),(H023,H026)))), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))[0.0100]; (((H030,H006),(H007,(H035,(((H021,H009),(H012,H002)),(H023,H026))))), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))[0.0100]; (((H030,H006),(H035,(H007,(((H021,H009),(H012,H002)),(H023,H026))))), (H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029, H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001), (H015,H020)))))))))),H019)))))))[0.0100]; (H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))), (H025,(H004,((H005,H008),(H024,((H032,H016),(H031,((H013,(H022,(((H033, (H010,(H011,(H003,(H014,(H017,H027)))))),H034),(H029,(H018,(H028,(H001, (H015,H020)))))))),H019))))))))))[0.0100]; ALTree-v1.3.2/test/phylip/ancestor_absent/association/run_altree000077500000000000000000000006431412112337500250610ustar00rootroot00000000000000#!/bin/sh -x #To run phylip options a and 5 were selected phylip mix # to run the association test. # The ancestral sequence is not in the phylip output file, that's why we # have to specify it with the --anc-seq option # Only one permutation is performed... altree -i outfile -j nb_cas_controls.txt \ -a -t SNP -p phylip -r 1 --data-qual qualitative \ --tree-to-analyse 1 --anc-seq 1100010001 -o 1_trio_phy.asso ALTree-v1.3.2/test/phylip/ancestor_absent/association/trio.phy000066400000000000000000000014111412112337500244640ustar00rootroot00000000000000 35 10 H019 0100101111 H026 0111010001 H004 0100110001 H020 1000011110 H034 0100011110 H027 1111001110 H023 1111010001 H016 0101100001 H002 1111100001 H015 1000011101 H006 1000010001 H001 1000011111 H010 1101011110 H028 1000011011 H024 0100100011 H017 1111011111 H009 1111000101 H007 1101010001 H033 0101011110 H008 0100100001 H029 0100011111 H003 1101111111 H035 1101010000 H013 0100101110 H032 0101101001 H025 0100010001 H021 0111100101 H030 1100010011 H031 0100100101 H012 1111000001 H005 0100100000 H011 1101011111 H022 0100111110 H014 0111011111 H018 1100011111 ALTree-v1.3.2/test/phylip/ancestor_present/000077500000000000000000000000001412112337500206605ustar00rootroot00000000000000ALTree-v1.3.2/test/phylip/ancestor_present/association/000077500000000000000000000000001412112337500231745ustar00rootroot00000000000000ALTree-v1.3.2/test/phylip/ancestor_present/association/1_trio_phy.asso000066400000000000000000000147221412112337500261460ustar00rootroot00000000000000 /----* H035 (LEVEL: 2) case/control:1/0 | Site: 10 Sens: 1-->0 /----* 22 (LEVEL: 1) case/control:26/36 | | Site: 4 Sens: 0-->1 | \----* H007 (LEVEL: 2) case/control:25/36 | /----* H025 (LEVEL: 2) case/control:2/3 |----* 25 (LEVEL: 1) case/control:75/51 | | Site: 1 Sens: 1-->0 | | /----* H004 (LEVEL: 3) case/control:11/2 | \----* 2 (LEVEL: 2) case/control:73/48 | | Site: 5 Sens: 0-->1 | | /----* H005 (LEVEL: 4) case/control:2/2 | | | Site: 10 Sens: 1-->0 | | |----* H031 (LEVEL: 4) case/control:1/0 | | | Site: 8 Sens: 0-->1 | | |----* H008 (LEVEL: 4) case/control:28/19 | \----* 19+(30+(28))+(14) (LEVEL: 3) case/control:62/46 | | Site: 6 Sens: 1-->0 | |----* H024 (LEVEL: 4) case/control:1/0 | | Site: 9 Sens: 0-->1 | | /----* H032 (LEVEL: 5) case/control:0/1 | | | Site: 7 Sens: 0-->1 | | |----* H016 (LEVEL: 5) case/control:2/2 | \----* 7+(24) (LEVEL: 4) case/control:30/25 | | Site: 4 Sens: 0-->1 | | /----* H021 (LEVEL: 6) case/control:11/2 | | | Site: 8 Sens: 0-->1 | \----* 26 (LEVEL: 5) case/control:28/22 | | Site: 3 Sens: 0-->1 | | /----* H002 (LEVEL: 7) case/control:9/3 | \----* 8 (LEVEL: 6) case/control:17/20 | | Site: 1 Sens: 0-->1 | | /----* H012 (LEVEL: 8) case/control:1/2 | | |----* H009 (LEVEL: 8) case/control:5/10 | | | Site: 8 Sens: 0-->1 | \----* 16+(29) (LEVEL: 7) case/control:8/17 | | Site: 5 Sens: 1-->0 | | /----* H023 (LEVEL: 9) case/control:1/5 | \----* 6 (LEVEL: 8) case/control:2/5 | | Site: 6 Sens: 0-->1 | \----* H026 (LEVEL: 9) case/control:1/0 | Site: 1 Sens: 1-->0 |----* ANCE (LEVEL: 1) case/control:4/4 -----* 1+(17)+(27+(35)) (LEVEL: 0) case/control:204/204 | | [0] ddl=4 chi2=7.12 p_value_chi2=0.105 | [1] ddl=7 chi2=10.66 p_value_chi2=0.131 | [2] ddl=9 chi2=19.12 p_value_chi2=0.01 | [3] ddl=16 chi2=24.70 p_value_chi2=0.05 | [4] ddl=20 chi2=40.53 p_value_chi2=0.002 | [5] ddl=25 chi2=54.97 p_value_chi2=0 | [6] ddl=30 chi2=63.51 p_value_chi2=0 | [7] ddl=33 chi2=64.80 p_value_chi2=0 | [8] ddl=35 chi2=68.34 p_value_chi2=0 |----* H030 (LEVEL: 1) case/control:1/1 | Site: 9 Sens: 0-->1 | /----* H006 (LEVEL: 2) case/control:23/19 \----* 10 (LEVEL: 1) case/control:98/112 | Site: 2 Sens: 1-->0 | /----* H028 (LEVEL: 3) case/control:4/0 \----* 13 (LEVEL: 2) case/control:75/93 | Site: 7 Sens: 0-->1 | Site: 9 Sens: 0-->1 | /----* H015 (LEVEL: 4) case/control:2/6 | | Site: 9 Sens: 1-->0 | |----* H001 (LEVEL: 4) case/control:24/39 \----* 3+(9+(11)) (LEVEL: 3) case/control:71/93 | Site: 8 Sens: 0-->1 |----* H020 (LEVEL: 4) case/control:5/9 | Site: 10 Sens: 1-->0 | /----* H018 (LEVEL: 5) case/control:2/2 | | /----* H011 (LEVEL: 6) case/control:3/8 | | |----* H003 (LEVEL: 6) case/control:2/0 | | | Site: 5 Sens: 0-->1 | |----* 21+(31)+(15) (LEVEL: 5) case/control:9/25 | | | Site: 4 Sens: 0-->1 | | | /----* H014 (LEVEL: 7) case/control:2/3 | | | | Site: 1 Sens: 1-->0 | | |----* 33 (LEVEL: 6) case/control:2/11 | | | | Site: 3 Sens: 0-->1 | | | \----* H017 (LEVEL: 7) case/control:0/8 | | | /----* H010 (LEVEL: 7) case/control:1/3 | | | |----* H033 (LEVEL: 7) case/control:0/1 | | | | Site: 1 Sens: 1-->0 | | \----* 12+(18) (LEVEL: 6) case/control:2/6 | | | Site: 10 Sens: 1-->0 | | \----* H027 (LEVEL: 7) case/control:1/2 | | Site: 6 Sens: 1-->0 | | Site: 3 Sens: 0-->1 \----* 5+(34) (LEVEL: 4) case/control:40/39 | Site: 2 Sens: 0-->1 | /----* H029 (LEVEL: 6) case/control:1/3 \----* 20 (LEVEL: 5) case/control:29/12 | Site: 1 Sens: 1-->0 | /----* H034 (LEVEL: 7) case/control:1/0 \----* 4 (LEVEL: 6) case/control:28/9 | Site: 10 Sens: 1-->0 | /----* H022 (LEVEL: 8) case/control:9/1 \----* 32 (LEVEL: 7) case/control:27/9 | Site: 5 Sens: 0-->1 | /----* H013 (LEVEL: 9) case/control:15/5 \----* 23 (LEVEL: 8) case/control:18/8 | Site: 6 Sens: 1-->0 \----* H019 (LEVEL: 9) case/control:3/3 Site: 10 Sens: 0-->1 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 ALTree-v1.3.2/test/phylip/ancestor_present/association/ancestors000066400000000000000000000000141412112337500251130ustar00rootroot0000000000000011000100011 ALTree-v1.3.2/test/phylip/ancestor_present/association/nb_cas_controls.txt000066400000000000000000000010421412112337500271020ustar00rootroot00000000000000H019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 ANCE m004 c004 ALTree-v1.3.2/test/phylip/ancestor_present/association/outfile000066400000000000000000037425341412112337500246100ustar00rootroot00000000000000 Mixed parsimony algorithm, version 3.69 Wagner parsimony method 100 trees in all found +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----------------------------------------------27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +-----H015 ! ! +--------------------------------------9 ! ! ! ! +--H001 +-13 ! +-11 ! ! +--H020 ! ! ! ! +--------------------H018 ! ! ! +--3 ! +--H011 ! +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----------------------------------------------27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +--H001 ! ! +-11 ! ! +--------------------------------------9 +--H015 +-13 ! ! ! ! +-----H020 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--3 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H001 +-13 ! ! ! +--H015 ! ! +--------------------------------------9 +-11 ! +--H020 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--3 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 11 yes ..... ..1.. 11 H001 no ..... ..... 11 3 no ..... ..... 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------------------------------------------------------------35 ! ! +--H030 -17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! ! +----------------------------------------------------25 ! ! ! ! ! ! +-----H005 ! ! ! ! ! +-30 +----27 ! +--2 ! ! +--H031 ! ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! ! ! +----------24 +-----------------H016 ! ! ! ! +-----1 +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--------------------------------------H025 ! ! ! ! +-----------------------------------H004 ! +----------------------------------------------------------25 ! ! ! ! ! +-----H005 ! ! ! ! +-30 ! ! +--2 ! ! +--H031 -17 ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! ! ! +----------24 +-----------------H016 ! ! ! ! ! ! +--7 +--------------H021 +-----1 ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! ! ! +----------------------------------------------------27 +--------------------------------------H025 ! ! ! ! ! ! ! ! +-----------------------------------H004 ! ! +----25 ! -17 ! ! ! +-----H005 ! ! ! ! +-30 ! ! +--2 ! ! +--H031 ! ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! ! ! +----------24 +-----------------H016 +-----1 ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--------------------------------------------H030 ! ! ! +----------------------------------------------------27 +-----------------------------------------ANCE ! ! ! ! ! ! +-35 +--------------------------------------H025 ! ! ! ! ! ! ! ! +-----------------------------------H004 -17 ! +-25 ! ! ! ! ! +-----H005 ! ! ! ! +-30 ! ! +--2 ! ! +--H031 ! ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! +-----1 +----------24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 35 no ..... ..... 35 ANCE no ..... ..... 35 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--------------------------------------------ANCE ! ! ! +----------------------------------------------------35 +-----------------------------------------H030 ! ! ! ! ! ! +-27 +--------------------------------------H025 ! ! ! ! ! ! ! ! +-----------------------------------H004 -17 ! +-25 ! ! ! ! ! +-----H005 ! ! ! ! +-30 ! ! +--2 ! ! +--H031 ! ! ! +----------------------19 +-28 ! ! ! ! ! +--H008 ! ! ! ! ! ! ! +-14 +--------H024 ! ! ! ! ! ! +--------------------H032 ! ! ! ! +-----1 +----------24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-14 +-----------------------------H005 ! ! ! ! ! ! +-30 +--H031 ! ! ! +----------------------28 ! ! ! ! +--H008 ! ! +-19 ! ! ! +--------------------H032 ! ! ! ! +-----1 +----24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-14 +--H031 ! ! ! +-------------------------28 ! ! ! ! +--H008 ! ! +-19 ! ! ! +-----------------------H005 ! ! ! ! ! ! +----30 +--------------------H032 ! ! ! ! +-----1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! ! ! +-----H005 ! ! +-14 +----------------------30 ! ! ! ! ! +--H031 ! ! ! ! +-28 ! ! +-19 +--H008 ! ! ! ! ! ! +--------------------H032 ! ! ! ! +-----1 +-------24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-14 +-----------------------------H005 ! ! ! ! ! ! +-30 +--------------------------H031 ! ! ! ! ! ! +-28 +-----------------------H008 ! ! ! ! ! ! +-19 +--------------------H032 ! ! ! ! +-----1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-14 +-----------------------------H005 ! ! ! ! ! ! +-30 +--------------------------H008 ! ! ! ! ! ! +-19 +-----------------------H031 ! ! ! ! ! ! +-28 +--------------------H032 ! ! ! ! +-----1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--ANCE ! +----------------------------------------35 ! ! +--H030 ! +----------------------------------------------------27 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 -17 ! ! ! ! ! ! ! +-----H005 ! ! +--2 +-------------------------30 ! ! ! ! ! +--H031 ! ! ! ! +-28 ! ! +-19 +--H008 ! ! ! ! ! ! +-----------------------H024 ! ! ! ! ! ! +-------14 +--------------------H032 ! ! ! ! +-----1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--------------------------------------------------H006 ! ! +----------------------------------------------10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 ! +----------------------------------------------------------17 +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! +----25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! +-14 +--------H024 ! ! ! ! +--------------------H032 ! ! ! ! +----------24 +-----------------H016 --1 ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! ! +-----------------------------------H004 +----------------------------------------------------------------25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! ! ! +--------H024 ! +-14 ! ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! +-----------7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! ! +-----------------------------------H004 +----------------------------------------------------------------25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! +-14 +--------H024 ! ! ! ! +--------------------H032 ! ! ! ! +----------24 +-----------------H016 ! ! ! ! +--7 +--------------H021 --1 ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! ! +-----------------------------------H004 +----------------------------------------------------------------25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! +-14 +--------H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 ! ! ! ! +-24 +--------------H021 --1 ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! ! ! +--H008 ! +-19 ! ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--------7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--H031 ! ! +----------------------------28 ! ! ! +--H008 ! +-19 ! ! +--------------------------H005 ! ! ! ! +----30 +-----------------------H024 ! ! ! ! +-14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H005 ! ! ! ! +-30 +--H031 ! ! +-------------------------28 ! ! ! +--H008 ! +-19 ! ! +-----------------------H024 ! ! ! ! +----14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! +-------------34 +-----------------H003 +----11 ! ! ! ! ! +-21 +--------------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 +--5 +-15 ! ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! +-------------34 +-----------------H011 +----11 ! ! ! ! ! +-31 +--------------H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 +--5 +-15 ! ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H005 ! ! ! ! +-30 +-----------------------------H008 ! ! ! ! +-19 +--------------------------H031 ! ! ! ! +-28 +-----------------------H024 ! ! ! ! +-14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H005 ! ! ! ! +-30 +-----------------------------H031 ! ! ! ! +-28 +--------------------------H008 ! ! ! ! +-19 +-----------------------H024 ! ! ! ! +-14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H015 +-13 +-----------------------------------------9 ! ! +--H020 ! ! ! ! +--------------------------------------H001 +--3 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +----11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------------------------------------------------------------------22 ! +--H007 ! ! +--------------------------------------H025 ! ! ! +----------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! ! ! +-----H005 ! ! +--2 +-------------------------30 ! ! ! ! ! +--H031 -17 ! ! ! +-28 ! ! +-19 +--H008 ! ! ! ! ! ! +-----------------------H024 ! ! ! ! ! ! +-------14 +--H032 ! ! ! +----------------24 ! ! ! ! +--H016 ! ! +--7 ! ! ! +--------------H021 +-----1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----------------------------------------27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +-----H001 ! ! +-------------------------------------11 ! ! ! ! +--H015 +-13 ! +--9 ! ! +--H020 ! ! ! ! +--------------------H018 ! ! ! +--3 ! +--H011 ! +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----------------------------------------------27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +-----H001 ! ! +-------------------------------------11 ! ! ! ! +--H015 +-13 ! +--9 ! ! +--H020 ! ! ! ! +--------------------H018 ! ! ! +--3 ! +--H011 ! +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 ! ! +----27 +--------------------------------------------------H006 ! ! ! ! +-----------------------------------------------H028 +----10 ! ! ! +-----H001 ! ! +-------------------------------------11 ! ! ! ! +--H015 +-13 ! +--9 ! ! +--H020 ! ! ! ! +--------------------H018 ! ! ! +--3 ! +--H011 ! +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--------5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! ! ! +--------------------------------------------H028 +--9 ! ! ! +--H001 ! ! +-------------------------------------11 +-13 ! +--H020 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--3 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .1?.. 9 H015 maybe ..... ..1.. 9 13 yes ..... ...1. 13 H028 maybe ..... ..0.. 13 3 maybe ..... ..1.. 3 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--H001 +-13 +----------------------------------------11 ! ! +--H015 ! ! ! ! +--------------------------------------H020 +--9 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-----3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 9 yes ..... ..1.. 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! ! ! +--------------------------------------------H001 +--9 ! ! ! +--H028 ! ! +-------------------------------------13 +-11 ! +--H020 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--3 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! ! ! +--H028 +--9 +----------------------------------------13 ! ! +--H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-----3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! ! ! +--H028 +--9 +----------------------------------------13 ! ! +--H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-----3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H028 +-11 ! ! ! +--------------------------------------H020 ! ! ! +-13 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H028 +-11 ! ! ! +--------------------------------------H020 ! ! ! +-13 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H028 +-11 ! ! ! +--------------------------------------H020 ! ! ! +-13 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H033 ! +----18 ! ! +--H010 ! +-12 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H020 +-11 ! ! ! +--------------------------------------H028 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-13 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .11.. 9 H015 no ..... ..... 9 11 yes ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 13 no ..... ..... 13 H028 yes ..... ..0.. 13 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H034 +--4 ! +--------H033 +-18 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 18 no ..... ..... 18 H033 yes ...1. ..... 18 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 ! ! +-------------------20 +--H033 ! +-------18 ! ! +--H034 +--4 ! +-----H022 +----32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 18 no ..... ..... 18 H033 yes ...1. ..... 18 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +--------H005 ! +--2 +----------------------30 ! ! ! ! +-----H008 ! ! ! +-19 ! ! ! ! +--H031 ! +-14 +-28 ! ! +--H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 ! +----------------------------------------------------------17 +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! +----25 ! ! ! ! +--H031 ! ! ! +----28 ! +--2 ! +--H008 ! ! +----------------------19 ! ! ! ! +--H005 ! ! ! +----30 ! +-14 +--H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 ! +----------------------------------------------------------17 +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! +----25 ! ! ! ! +--------H005 ! ! ! ! ! +--2 +----------------------30 +--H031 ! ! ! ! +-28 ! ! ! +-19 +--H008 ! ! ! ! ! +-14 +-----H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 ! +----------------------------------------------------------17 +--------------------------------------H025 ! ! ! ! ! ! +-----------------------------------H004 ! +----25 ! ! ! ! +-----H005 ! ! ! +-30 ! +--2 ! ! +--H031 ! ! +----------------------19 +-28 ! ! ! ! +--H008 ! ! ! ! ! +-14 +--------H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +--------H005 ! +--2 +----------------------30 ! ! ! ! +-----H031 ! ! ! +-28 ! ! ! ! +--H008 ! +-14 +-19 ! ! +--H024 ! ! ! ! +--------------------H016 ! ! ! ! +-----------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! ! ! ! +--------7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H012 ! +-29 ! ! +-----H009 ! +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +--H008 ! +--2 +----------------------------19 ! ! ! +--H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +----28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 19 no ..... ..... 19 H008 no ..... ..... 19 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H031 ! +-14 +----------------------28 ! ! ! ! +--H005 ! ! ! +-30 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +--H005 ! +-14 +-30 ! ! +----------------------28 +--H031 ! ! ! ! ! +-19 +-----H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! +-14 +-----------------------------H008 ! ! ! ! +-19 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! +-14 +--H005 ! ! +-------------------------30 ! ! ! +--H031 ! +-28 ! ! +-----------------------H008 ! +----19 ! ! +--------------------H016 ! +--7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H011 +--3 ! ! ! ! ! ! ! +-----H003 ! ! +-31 +----21 ! ! ! ! ! +--H014 ! ! ! ! +-33 +--5 +-15 +--H017 ! ! ! ! +--H010 ! +-------12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 15 no ..... ..... 15 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H011 +--3 ! ! ! ! ! +-31 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +-15 +--5 ! +-----H003 ! +----21 ! ! +--H010 ! +-12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 yes ..... ....0 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! ! ! +--H005 ! +-14 +----------------------30 ! ! ! +--H031 ! ! ! ! +-28 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +-----7 ! ! +--------------H021 ! +----26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--------------------------------H008 ! ! ! ! ! ! +-19 +--H031 ! ! ! +-------------------------28 ! ! ! ! +--H024 ! ! +-14 ! ! ! +-----------------------H005 ! ! +----30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--H031 ! ! ! +----------------------------28 ! ! ! ! +--H008 ! ! +-19 ! ! ! +--------------------------H024 ! ! +----14 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H008 ! ! +-19 ! ! ! +-----------------------------H031 ! ! +-28 ! ! ! +--------------------------H024 ! ! +-14 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--------------------------------H031 ! ! ! ! ! ! +-28 +-----------------------------H008 ! ! ! ! ! ! +-19 +--------------------------H024 ! ! ! ! ! ! +-14 +-----------------------H005 ! ! ! ! ! ! +-30 +--------------------H032 ! ! ! ! +--1 +-24 +-----------------H016 ! ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H031 ! ! +-28 ! ! ! +-----------------------------H008 ! ! +-19 ! ! ! +--------------------------H024 ! ! +-14 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--H005 ! ! ! +----------------------------30 ! ! ! ! +--H031 ! ! +-28 ! ! ! +--------------------------H008 ! ! +----19 ! ! ! +-----------------------H024 ! ! +-14 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H012 ! +-29 ! ! +-----H009 ! +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H031 ! ! +-28 ! ! ! +-----------------------------H008 ! ! +-19 ! ! ! +--------------------------H024 ! ! +-14 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H012 ! +-29 ! ! +-----H009 ! +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H005 ! ! +-30 ! ! ! +-----------------------------H031 ! ! +-28 ! ! ! +--------------------------H008 ! ! +-19 ! ! ! +-----------------------H024 ! ! +-14 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H012 ! +-29 ! ! +-----H009 ! +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 30 yes ..... 0.... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! -27 ! +--2 +--------------------------------H008 ! ! ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! ! ! +-14 +--H005 ! ! ! +----------------------30 ! ! ! ! +--H031 ! ! +-28 ! ! ! +--------------------H032 ! ! +----24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H008 ! ! +-19 ! ! ! +-----------------------------H024 ! ! +-14 ! ! ! +--------------------------H031 ! ! +-28 ! ! ! +-----------------------H005 ! ! +-30 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------------------------------------------------------------------------H030 ! ! +--H035 ! +----------------------------------------22 ! ! +--H007 ! +-------------------------------------------------------17 ! ! ! +--------------------------------------H025 ! ! +----25 ! ! ! +-----------------------------------H004 ! ! +--2 -27 ! ! +--------------------------------H008 ! ! +-19 ! ! ! +-----------------------------H024 ! ! +-14 ! ! ! +--------------------------H005 ! ! +-30 ! ! ! +-----------------------H031 ! ! +-28 ! ! ! +--------------------H032 ! ! +-24 +--1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +----------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 27 no ..... ..... 27 H030 yes ..... ...1. 27 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 ! ! +-----------------H016 --1 +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 --1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--------------------------------------------------------H030 ! ! +----------------------------------------------27 +-----------------------------------------------------ANCE ! ! +-35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 --1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--------------------------------------------------------ANCE ! ! +----------------------------------------------35 +-----------------------------------------------------H030 ! ! +-27 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 27 maybe ..... ...?. 27 H030 maybe ..... ...1. 27 10 yes .0... ..... 10 H006 maybe ..... ...0. 10 13 yes ..... .1... 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 --1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--------------------------------------------------------ANCE ! ! +----------------------------------------------35 +-----------------------------------------------------H006 ! ! +-10 +--------------------------------------------------H030 ! ! +-27 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 maybe .?... ..... 10 H006 maybe .0... ..... 10 27 yes ..... ...1. 27 H030 maybe .1... ..... 27 13 yes .0... .1... 13 H028 no ..... ..... 13 9 yes ..... ..1.. 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +-----------------------------------------------H030 ! +-------------------------------------------------------27 +--H035 ! ! +----------------------------------------22 ! ! ! +--H007 ! +-17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 --1 +----24 ! ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +-------------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +-----H030 +----------------------------------------27 ! ! +--H035 ! +-22 +-------------------------------------------------------17 +--H007 ! ! ! ! +--------------------------------------H025 ! ! ! ! +-------25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 ! +----24 --1 ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +-------------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +-------------------------------------------22 ! +--H007 +-------------------------------------------------------17 ! ! +-----------------------------------------H030 ! ! ! ! +----27 +--------------------------------------H025 ! ! ! ! +-25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H032 --1 +----24 ! ! +-----------------H016 ! +--7 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------ANCE ! ! +-------------------------------------------------35 +--------------------------------------------------H006 ! ! +-10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 35 no ..... ..... 35 ANCE no ..... ..... 35 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! ! +--H011 +--3 +----------------34 +----------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 ! ! ! ! +--H017 +--5 +----15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H003 +--3 ! ! ! ! ! +-21 +-----------H011 ! ! ! ! ! ! +-31 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H008 ! ! ! ! +-19 +-----------------------------H024 ! ! ! ! +-14 +--H005 ! ! +----------------------30 ! ! ! +--H031 ! +-28 ! ! +--------------------H016 ! +-----7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! +--9 +-----------------------------------------H001 ! ! ! ! +--------------------------------------H020 +-11 ! ! ! +-----------------H018 ! ! ! ! ! +----------------34 +--------------H011 +--3 ! ! ! ! ! +-31 +-----------H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +----33 +--5 ! ! +--H017 ! +-15 ! ! +--H010 ! +----12 ! +--H027 ! ! +--------------H029 +-------------------20 ! +-----------H033 +-18 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 maybe ..0.. ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 18 yes ..... ....0 18 H033 yes ...1. ..... 18 4 no ..... ..... 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! +--2 +--------------------------------H024 ! ! ! ! ! ! +-----H005 ! +-14 +----------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +--------------------H016 ! +--------7 ! ! +-----------------H032 --1 +-24 ! ! +--------------H021 ! +-26 ! ! +-----------H002 ! +--8 ! ! +--------H009 ! +-16 ! ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H001 +--9 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H033 ! +----18 ! ! +--H010 ! +-12 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 14 yes ..... 0.... 14 H024 yes ..... ...1. 14 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 11 maybe ..... ...1. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H028 ! ! ! ! +-----------------------------------------H001 +-13 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .1?.. 9 H015 maybe ..... ..1.. 9 13 yes ..... ...1. 13 H028 maybe ..... ..0.. 13 11 maybe ..... ..1.. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H028 ! ! ! ! +-----------------------------------------H001 +-13 ! ! ! +--------------------------------------H020 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .1?.. 9 H015 maybe ..... ..1.. 9 13 yes ..... ...1. 13 H028 maybe ..... ..0.. 13 11 maybe ..... ..1.. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H015 ! ! +--9 +--------------------------------------------H028 ! ! ! ! +-----------------------------------------H020 +-13 ! ! ! +--------------------------------------H001 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 9 yes ..... .1?.. 9 H015 maybe ..... ..1.. 9 13 yes ..... ...1. 13 H028 maybe ..... ..0.. 13 3 maybe ..... ..1.. 3 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H020 +--9 ! ! ! +--------------------------------------H001 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 3 maybe ..... ...1. 3 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H015 ! ! ! ! +-----------------------------------------H020 +--9 ! ! ! +--------------------------------------H001 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.?. 13 H028 maybe ..... ...1. 13 9 yes ..... ..1.. 9 H015 maybe ..... ...0. 9 3 maybe ..... ...1. 3 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H015 +-11 ! ! ! +--------------------------------------H020 ! ! ! +--9 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--3 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 11 yes ..... ..1.. 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 3 no ..... ..... 3 H020 yes ..... ....0 3 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H033 ! ! ! +-------18 ! ! ! ! +--H010 ! ! +----12 +-----5 ! +-----H017 ! +----15 ! ! +--H014 ! +-33 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 no ..... ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H033 ! ! ! +-------18 ! ! ! ! +--H010 ! ! +----12 +-----5 ! +--H014 ! ! +-33 ! +----15 +--H017 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H033 ! ! ! +-------18 ! ! ! ! +--H010 ! ! +----12 +-----5 ! +-----H014 ! +----33 ! ! +--H017 ! +-15 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 no ..... ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H032 ! ! ! ! +-24 +-----------------H016 --1 ! ! ! +--7 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 --1 +--7 ! ! +--------------H021 ! ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! ! ! +--------------------------------------------H020 +-13 ! ! ! +--H001 ! ! +-------------------------------------11 +--3 ! +--H015 ! ! ! ! +--------------------H018 ! ! ! ! ! ! +--H011 +--9 +-------------34 +-------------31 ! ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +-----5 ! +-----H033 ! +----18 ! ! +--H010 ! +-12 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H001 ! ! ! ! +-----------------------------------------H020 +-11 ! ! ! +--------------------------------------H015 ! ! ! +--3 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--9 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 11 yes ..... ..1.. 11 H001 no ..... ..... 11 3 no ..... ..... 3 H020 yes ..... ....0 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H020 ! ! ! ! +-----------------------------------------H015 +--3 ! ! ! +--------------------------------------H001 ! ! ! +--9 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--------------------------------------H025 ! +----------------------------------------------------------------25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--H032 ! ! +----------------24 ! ! ! +--H016 ! +--7 ! ! +--------------H021 --1 ! ! ! +----26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H035 ! +----------------------------------------------------------22 ! ! +--H007 ! ! +----------------------------------------17 +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H020 ! ! ! ! +-----------------------------------------H015 +--3 ! ! ! +--------------------------------------H001 ! ! ! +--9 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +-11 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +-----H010 ! +----12 ! ! +--H033 ! +-18 ! +--H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 no ..... ..... 15 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 +--H035 +----------------------------------------22 ! +--H007 +----------------------------------------------------------17 ! ! +--------------------------------------H025 ! ! ! ! +----25 +-----------------------------------H004 ! ! ! ! ! ! +-----H005 ! +--2 +-------------------------30 ! ! ! ! +--H031 ! ! ! +-28 ! +-19 +--H008 ! ! ! ! +-----------------------H024 ! ! ! ! +-------14 +--------------------H016 ! ! ! ! +--7 +-----------------H032 --1 ! ! ! +-24 +--------------H021 ! ! ! ! +-26 +-----------H002 ! ! ! ! +--8 +--H012 ! ! +----29 ! ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--ANCE ! +----------------------------------------------------35 ! ! +--H030 +----------------------------------------------27 ! +--------------------------------------------------H006 ! ! +----10 +-----------------------------------------------H028 ! ! +-13 +--------------------------------------------H020 ! ! ! ! +-----------------------------------------H001 +--3 ! ! ! +--------------------------------------H015 ! ! ! +-11 ! +--------------------H018 ! ! ! ! ! ! +--H011 ! ! +-------------34 +-------------31 +--9 ! ! ! +--H003 ! ! ! ! ! ! +-21 +--H014 ! ! ! +-------33 ! ! ! ! +--H017 ! ! +----15 +--5 ! +--H033 ! ! +-18 ! +----12 +--H010 ! ! ! +-----H027 ! ! +-----------H029 +----------------------20 ! +--------H034 +--4 ! +-----H022 +-32 ! +--H013 +-23 +--H019 requires a total of 38.000 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 1 no ..... ..... 1 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 no ..... ..... 14 H024 yes ..... ...1. 14 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 27 no ..... ..... 27 35 no ..... ..... 35 ANCE no ..... ..... 35 H030 yes ..... ...1. 27 10 yes .0... ..... 10 H006 no ..... ..... 10 13 yes ..... .1.1. 13 H028 no ..... ..... 13 3 yes ..... ..1.. 3 H020 yes ..... ....0 3 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 5 yes .1... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes 0.... ..... 20 H029 no ..... ..... 20 4 yes ..... ....0 4 H034 no ..... ..... 4 32 yes ....1 ..... 32 H022 no ..... ..... 32 23 yes ..... 0.... 23 H013 no ..... ..... 23 H019 yes ..... ....1 ALTree-v1.3.2/test/phylip/ancestor_present/association/outtree000066400000000000000000000631301412112337500246110ustar00rootroot00000000000000(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,((H015, (H001,H020)),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(((H001, H015),H020),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H001, ((H015,H020),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H035,H007),((ANCE,H030),((H025,(H004,(((H005,(H031,H008)),H024), (H032,(H016,(H021,(H002,((H012,H009),(H023,H026))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H035,H007),((H025,(H004,(((H005,(H031,H008)),H024),(H032,(H016,(H021, (H002,((H012,H009),(H023,H026))))))))),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(((H005,(H031,H008)),H024), (H032,(H016,(H021,(H002,((H012,H009),(H023,H026)))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),((H030,(ANCE,(H025,(H004,(((H005,(H031,H008)),H024),(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),((ANCE,(H030,(H025,(H004,(((H005,(H031,H008)),H024),(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,(H005,((H031,H008),(H032, (H016,(H021,(H002,((H012,H009),(H023,H026)))))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,((H031,H008),(H005,(H032, (H016,(H021,(H002,((H012,H009),(H023,H026)))))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,((H005,(H031,H008)),(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,(H005,(H031,(H008,(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,(H024,(H005,(H008,(H031,(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))))),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H035,H007),(((ANCE,H030),(H025,(H004,((H005,(H031,H008)),(H024,(H032, (H016,(H021,(H002,((H012,H009),(H023,H026))))))))))),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,(((H005,(H031,H008)),H024),(H032,(H016,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H025,(H004,(((H005,(H031,H008)),H024),((H032,H016),(H021,(H002,((H012, H009),(H023,H026)))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(((H005,(H031,H008)),H024),(H032,(H016,(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(((H005,(H031,H008)),H024),(H016,(H032,(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(H024,((H005,(H031,H008)),((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H031,H008),(H005,(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026)))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(H005,((H031,H008),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026)))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,(H003,(H011,((H014,H017),(H010,(H033,H027)))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H015, H020),(H001,((H018,(H011,(H003,((H014,H017),(H010,(H033,H027)))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(H005,(H008,(H031,(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))))),((H035,H007),((ANCE,H030),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,(H005,(H031,(H008,(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))))),((H035,H007),((ANCE,H030),(H006,(H028, ((H015,H020),(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H035,H007),((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026))))))))),((ANCE,H030),(H006,(H028,((H001, (H015,H020)),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,((H001, (H015,H020)),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,((H001, (H015,H020)),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H028,((H001,H020),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,((H001, H015),(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,((H028,H020),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, ((H028,H001),(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, ((H028,H001),(H020,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,(H028,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,(H028,(H020,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,(H028,(H020,((H018,((H011,H003),((H014,H017),(H033,(H010,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H001,(H020,(H028,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H034,(H033,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,((H033,H034),(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H008,(H031,H024))),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(((H031,H008),(H005,H024)),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,((H031,H008),H024)),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(((H005,(H031,H008)),H024),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,(H008,H024))),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H015, (H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H012,(H009,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H008,H024),((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H031,(H005,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,(((H005,H031),H008),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,(H008,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,H031),(H008,(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H011,((H003,(H014,H017)),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H011,((H014,H017),(H003,(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),((H032,H016),(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,((H031,H024),(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,((H031,H008),(H024,(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,(H031,(H024,(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H031,(H008,(H024,(H005,(H032,(H016, (H021,(H002,((H012,H009),(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H031,(H008,(H024,(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,((H005,H031),(H008,(H024,(H032,(H016, (H021,(H002,(H012,(H009,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H031,(H008,(H024,(H005,(H032,(H016, (H021,(H002,(H012,(H009,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H005,(H031,(H008,(H024,(H032,(H016, (H021,(H002,(H012,(H009,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,(H024,(H031,(H005,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (H030,(((H035,H007),(H025,(H004,(H008,(H024,(H005,(H031,(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),(H030,(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H030,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H030,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100]; ((H030,((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H030,(H035,H007)),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H030,(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016, (H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,(H011,(H003,((H014,H017),(H010,H027))))), (H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028, (H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H033,(H010,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H028,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H028,(H001,(H020,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015, (H028,(H020,(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H015,(H020,(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H015, (H020,(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H001, (H015,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H033,H010),(H017,(H014,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H033,H010),((H014,H017),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H033,H010),(H014,(H017,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H032,(H016,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H020,((H001,H015),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H020,((H001,H015),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021, (H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020, ((H001,H015),((H018,((H011,H003),((H014,H017),(H033,(H010,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H001, (H020,(H015,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H020,(H015,(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012, H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H020, (H015,(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))), (H029,(H034,(H022,(H013,H019)))))))))))))[0.0100]; (((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021, (H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028, (H020,(H001,(H015,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))), (H029,(H034,(H022,(H013,H019))))))))))))[0.0100]; ALTree-v1.3.2/test/phylip/ancestor_present/association/run_altree000077500000000000000000000005701412112337500252640ustar00rootroot00000000000000#!/bin/sh -x # To run phylip, option A and 5 are used phylip mix # To perform the association test. The ancestral sequence must be # provided with the --anc-seq option beacuse it is not in the phylip # output file altree -i outfile -j nb_cas_controls.txt \ -a -t SNP -p phylip -r 1 --data-qual qualitative\ --tree-to-analyse 1 --anc-seq 1100010001 -o 1_trio_phy.asso ALTree-v1.3.2/test/phylip/ancestor_present/association/trio.phy000066400000000000000000000014441412112337500246760ustar00rootroot00000000000000 36 10 H019 0100101111 H026 0111010001 H004 0100110001 H020 1000011110 H034 0100011110 H027 1111001110 H023 1111010001 H016 0101100001 H002 1111100001 H015 1000011101 H006 1000010001 H001 1000011111 H010 1101011110 H028 1000011011 H024 0100100011 H017 1111011111 H009 1111000101 H007 1101010001 H033 0101011110 H008 0100100001 H029 0100011111 H003 1101111111 H035 1101010000 H013 0100101110 H032 0101101001 H025 0100010001 H021 0111100101 H030 1100010011 H031 0100100101 H012 1111000001 H005 0100100000 H011 1101011111 H022 0100111110 H014 0111011111 H018 1100011111 ANCE 1100010001 ALTree-v1.3.2/test/phylip/outgroup_absent/000077500000000000000000000000001412112337500205225ustar00rootroot00000000000000ALTree-v1.3.2/test/phylip/outgroup_absent/association/000077500000000000000000000000001412112337500230365ustar00rootroot00000000000000ALTree-v1.3.2/test/phylip/outgroup_absent/association/1_trio_phy.asso000066400000000000000000000221131412112337500260010ustar00rootroot00000000000000 /----* H030 (LEVEL: 1) case/control:1/1 | Site: 9 Sens: 0-->1 |----* H006 (LEVEL: 1) case/control:23/19 | Site: 2 Sens: 1-->0 -----* 35+(10+(27)) (LEVEL: 0) case/control:200/200 | | [0] ddl=2 chi2=0.43 p_value_chi2=0.801 | [1] ddl=4 chi2=3.49 p_value_chi2=0.539 | [2] ddl=6 chi2=7.31 p_value_chi2=0.24 | [3] ddl=8 chi2=9.87 p_value_chi2=0.241 | [4] ddl=9 chi2=12.35 p_value_chi2=0.17 | [5] ddl=10 chi2=18.26 p_value_chi2=0.037 | [6] ddl=12 chi2=19.27 p_value_chi2=0.04 | [7] ddl=16 chi2=27.25 p_value_chi2=0.015 | [8] ddl=18 chi2=31.34 p_value_chi2=0.009 | [9] ddl=19 chi2=31.42 p_value_chi2=0.016 | [10] ddl=20 chi2=39.94 p_value_chi2=0.002 | [11] ddl=21 chi2=50.63 p_value_chi2=0 | [12] ddl=23 chi2=52.79 p_value_chi2=0 | [13] ddl=25 chi2=53.21 p_value_chi2=0 | [14] ddl=27 chi2=54.70 p_value_chi2=0 | [15] ddl=32 chi2=66.05 p_value_chi2=0 | [16] ddl=34 chi2=68.34 p_value_chi2=0 | /----* H035 (LEVEL: 2) case/control:1/0 | | Site: 10 Sens: 1-->0 | |----* H007 (LEVEL: 2) case/control:25/36 \----* 17+(22) (LEVEL: 1) case/control:176/180 | Site: 4 Sens: 0-->1 | /----* H023 (LEVEL: 3) case/control:1/5 | |----* H026 (LEVEL: 3) case/control:1/0 | | Site: 1 Sens: 1-->0 \----* 1+(6) (LEVEL: 2) case/control:150/144 | Site: 3 Sens: 0-->1 | /----* H012 (LEVEL: 4) case/control:1/2 | |----* H009 (LEVEL: 4) case/control:5/10 | | Site: 8 Sens: 0-->1 \----* 16+(29) (LEVEL: 3) case/control:148/139 | Site: 6 Sens: 1-->0 | /----* H002 (LEVEL: 5) case/control:9/3 \----* 8 (LEVEL: 4) case/control:142/127 | Site: 5 Sens: 0-->1 | /----* H021 (LEVEL: 6) case/control:11/2 | | Site: 8 Sens: 0-->1 \----* 26 (LEVEL: 5) case/control:133/124 | Site: 1 Sens: 1-->0 | /----* H032 (LEVEL: 7) case/control:0/1 | | Site: 7 Sens: 0-->1 | |----* H016 (LEVEL: 7) case/control:2/2 \----* 7+(24) (LEVEL: 6) case/control:122/122 | Site: 3 Sens: 1-->0 | /----* H025 (LEVEL: 9) case/control:2/3 | | Site: 5 Sens: 1-->0 | /----* 25 (LEVEL: 8) case/control:13/5 | | | Site: 6 Sens: 0-->1 | | \----* H004 (LEVEL: 9) case/control:11/2 | |----* H008 (LEVEL: 8) case/control:28/19 | |----* H005 (LEVEL: 8) case/control:2/2 | | Site: 10 Sens: 1-->0 \----* 2+(19+(28+(30))) (LEVEL: 7) case/control:120/119 | Site: 4 Sens: 1-->0 |----* H031 (LEVEL: 8) case/control:1/0 | Site: 8 Sens: 0-->1 | /----* H024 (LEVEL: 9) case/control:1/0 \----* 14 (LEVEL: 8) case/control:76/93 | Site: 9 Sens: 0-->1 | /----* H013 (LEVEL: 11) case/control:15/5 | /----* 23 (LEVEL: 10) case/control:72/90 | | | Site: 10 Sens: 1-->0 | | | /----* H022 (LEVEL: 12) case/control:9/1 | | \----* 32 (LEVEL: 11) case/control:57/85 | | | Site: 6 Sens: 0-->1 | | | /----* H033 (LEVEL: 14) case/control:0/1 | | | /----* 18 (LEVEL: 13) case/control:1/4 | | | | | Site: 4 Sens: 0-->1 | | | | \----* H010 (LEVEL: 14) case/control:1/3 | | | | Site: 1 Sens: 0-->1 | | | |----* H034 (LEVEL: 13) case/control:1/0 | | \----* 4+(12) (LEVEL: 12) case/control:48/84 | | | Site: 5 Sens: 1-->0 | | | /----* H029 (LEVEL: 14) case/control:1/3 | | \----* 20 (LEVEL: 13) case/control:46/80 | | | Site: 10 Sens: 0-->1 | | | /----* H018 (LEVEL: 15) case/control:2/2 | | | | /----* H011 (LEVEL: 16) case/control:3/8 | | | | |----* H003 (LEVEL: 16) case/control:2/0 | | | | | Site: 5 Sens: 0-->1 | | | |----* 21+(31) (LEVEL: 15) case/control:8/21 | | | | | Site: 4 Sens: 0-->1 | | | | | /----* H014 (LEVEL: 17) case/control:2/3 | | | | | | Site: 1 Sens: 1-->0 | | | | | |----* H017 (LEVEL: 17) case/control:0/8 | | | | \----* 15+(33) (LEVEL: 16) case/control:3/13 | | | | | Site: 3 Sens: 0-->1 | | | | \----* H027 (LEVEL: 17) case/control:1/2 | | | | Site: 6 Sens: 1-->0 | | | | Site: 10 Sens: 1-->0 | | \----* 5+(34) (LEVEL: 14) case/control:45/77 | | | Site: 1 Sens: 0-->1 | | | /----* H001 (LEVEL: 16) case/control:24/39 | | | |----* H015 (LEVEL: 16) case/control:2/6 | | | | Site: 9 Sens: 1-->0 | | \----* 9+(11)+(13) (LEVEL: 15) case/control:35/54 | | | Site: 2 Sens: 1-->0 | | |----* H028 (LEVEL: 16) case/control:4/0 | | | Site: 8 Sens: 1-->0 | | \----* H020 (LEVEL: 16) case/control:5/9 | | Site: 10 Sens: 1-->0 \----* 3 (LEVEL: 9) case/control:75/93 | Site: 8 Sens: 0-->1 | Site: 7 Sens: 0-->1 \----* H019 (LEVEL: 10) case/control:3/3 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0.5 level 2 p-value (non corrected) 0.5 level 3 p-value (non corrected) 0.5 level 4 p-value (non corrected) 0.5 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 level 10 p-value (non corrected) 0 level 11 p-value (non corrected) 0 level 12 p-value (non corrected) 0 level 13 p-value (non corrected) 0 level 14 p-value (non corrected) 0 level 15 p-value (non corrected) 0 level 16 p-value (non corrected) 0 level 17 p-value (non corrected) 0 corrected minimal p_value in the tree: 0.5 ALTree-v1.3.2/test/phylip/outgroup_absent/association/nb_cas_controls.txt000066400000000000000000000010151412112337500267440ustar00rootroot00000000000000H019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 ALTree-v1.3.2/test/phylip/outgroup_absent/association/outfile000066400000000000000000036653761412112337500244620ustar00rootroot00000000000000 Mixed parsimony algorithm, version 3.69 Wagner parsimony method 100 trees in all found +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +--H023 ! +--------------------------------------------------------------------------------------6 ! ! +--H026 ! ! +-----1 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +----16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H023 ! ! +-----6 +--------------------------------------------------------------------------------------H026 ! ! +--1 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 1 no ..... ..... 1 H026 yes 0.... ..... 1 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! +-24 +-----------------------------------------------------------------H031 ! ! ! ! +--------------------------------------------------------------H005 +-28 ! ! ! +-----H008 ! ! +----------------------------------------------------19 ! ! ! ! +--H025 +-30 ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! +-24 +-----------------------------------------------------------------H005 ! ! ! ! +--------------------------------------------------------------H031 +-30 ! ! ! +-----H008 ! ! +----------------------------------------------------19 ! ! ! ! +--H025 +-28 ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 30 yes ...0. ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----H008 ! ! +----------------------------------------------------------19 +-24 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--H005 +--2 +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +--H005 ! ! +-------30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-24 ! ! +-----H008 ! ! +----19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--H025 ! ! +----------------------------------------------------25 +-28 ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-----2 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--H025 ! ! +----------------------------------------------------------25 +-19 ! +--H004 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +--2 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----------------------------------------------------------------H008 ! ! ! +-24 ! +--H005 ! ! +----30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H025 ! ! +----25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--------H031 ! ! +----------------------------------------------------28 ! ! ! ! +-----H005 +-19 ! +-30 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--------H005 ! ! +----------------------------------------------------30 ! ! ! ! +-----H031 +-19 ! +-28 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +--H025 +-24 +-------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H032 ! ! +-24 +--------------------------------------------------------------------H016 ! ! ! ! +--H025 +--7 +-------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 24 yes ..0.. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! +----------34 +-------------31 ! ! +-20 ! ! ! +--H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H033 ! ! ! ! ! +-------18 ! ! ! ! ! ! +--H010 +--3 ! ! +----12 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H033 ! ! ! ! ! +-------18 ! ! ! ! ! ! +--H010 +--3 ! ! +-12 ! +--5 ! +--H014 ! ! ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! ! +----------34 +-------------18 ! ! +-20 ! ! ! +--H010 ! ! ! ! ! ! ! ! ! ! +-12 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +----21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--H033 ! ! ! ! ! +----------18 ! ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! ! +--------H003 +--3 ! ! ! ! ! +--5 +----21 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 12 no ..... ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! ! +----31 ! ! +-20 +----------34 ! +--H003 ! ! ! ! ! +-------21 ! ! ! ! ! ! ! +--H033 ! ! ! ! ! ! +----18 ! ! ! ! +-12 +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H003 ! ! ! ! +----------34 +-------21 ! ! +-20 ! ! ! ! +-----H011 ! ! ! ! ! ! +-31 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! ! ! +-----H003 ! ! ! ! +-31 +-------21 ! ! ! ! ! ! ! +--H033 ! ! ! ! ! ! +-18 ! ! ! ! +-12 +--H010 +--3 ! ! ! ! +--5 ! +--H014 ! ! ! +-33 ! ! +-------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 12 no ..... ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +-----H003 ! ! ! ! +----------34 +----------21 ! ! +-20 ! ! ! ! +--H033 ! ! ! ! ! ! +-18 ! ! ! ! +-12 +--H010 ! ! ! ! ! ! ! ! ! ! +--------H011 +--3 ! ! ! ! ! ! ! +-------31 +--H014 ! +--5 ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H012 ! ! +-29 +--------------------------------------------------------------------------------H009 ! ! +-16 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +-----------H033 ! ! ! ! ! ! ! ! ! ! +-18 +--------H010 +--3 ! ! ! ! ! +--5 +-12 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 yes ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +-----------H010 ! ! ! ! ! ! ! ! ! ! +-12 +--------H033 +--3 ! ! ! ! ! +--5 +-18 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 15 yes ..1.. ..... 15 33 yes ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! +----------34 +-------------31 ! ! +-20 ! ! ! +--H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H014 ! ! ! ! ! +-------33 ! ! ! ! ! ! +--H017 +--3 ! ! +----15 ! ! ! ! +--H033 ! +--5 ! +-18 ! ! +----12 +--H010 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----H008 ! ! +----------------------------------------------------------19 +-24 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--H005 +--2 +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +----14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +--H005 ! ! +-------30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-24 ! ! +-----H008 ! ! +----19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H031 ! ! +----------------------------------------------------28 ! ! ! ! +--------H005 ! ! ! +-30 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-------14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-------------14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! +----------------13 ! ! +-----H015 ! +--9 ! ! +--H001 ! +-11 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H015 ! +--------------9 ! ! +-----H001 ! +-11 ! ! +--H028 ! +-13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-22 ! +----------------------------------------------------------------------------------------------17 +--H007 ! ! ! ! ! +-----H006 +-10 ! +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-------27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +-----------------------------------------------------------------------------------------------------H006 ! ! ! ! +--H035 +-10 +----------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H015 ! +--------------9 ! ! +-----H028 ! +-13 ! ! +--H001 ! +-11 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 ! +----22 -35 ! +--H007 ! +-------------------------------------------------------------------------------------------17 ! ! ! +--H030 ! ! +----27 ! ! +--H006 +-10 ! +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----------25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 ! ! ! +--H023 +--1 +-----6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-------------------------------------------------------------------------------30 ! ! ! +--H031 +--2 ! ! ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------7 +-28 ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +-----1 ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 1 no ..... ..... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! ! ! +--H035 +-10 +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----17 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! ! ! ! +--H005 +----25 ! +----------------------30 ! ! ! +--H031 ! ! ! ! ! +-------------------------------------------------------28 +--H032 ! ! ! ! +----------------24 +--2 ! ! ! +--H016 ! ! +-----7 ! ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 +--1 ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------------19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 +--2 ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! ! ! ! +----------------13 +--H001 ! ! +-11 ! +--9 +--H015 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +--------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H001 ! ! +-11 ! ! ! ! +--H028 ! +--------------9 +-13 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----H033 +-14 ! ! ! +----------------------------18 ! ! +--4 ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! ! ! ! ! +--5 +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 +--3 +-------20 ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! ! ! +----33 ! +-15 +--H017 ! ! ! ! +--H028 ! ! +-13 ! ! +-11 +--H001 ! ! ! ! ! +--------------9 +-----H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H032 ! ! ! ! ! +-------------------------------------------------------------24 +-----------------H016 ! ! ! ! ! +--2 ! +--7 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +-----H017 ! ! ! +----15 ! +--5 ! +--H014 ! ! +-33 ! ! +--H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +-----H014 ! ! ! +----33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! +----------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H001 ! +-------------11 ! ! +-----H015 ! +--9 ! ! +--H028 ! +-13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H001 ! ! ! ! +-------------11 +--H028 ! ! +-13 ! +--9 +--H015 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H028 ! ! +----13 ! ! ! +--H001 ! +-------------11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H028 ! ! +----13 ! ! ! +--H001 ! +-------------11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H001 ! +-------------11 ! ! +-----H028 ! +-13 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! +-10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +-25 ! ! ! +-----------------------------------------------------------------------------------H008 ! ! ! +--2 ! +--------------------H016 ! ! +-----------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +-19 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 1 no ..... ..... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +-----------------------H008 ! ! +----------------------------------------------------------19 ! ! ! ! +--------------------H016 ! ! ! +--7 ! ! ! ! +-----------------H032 +--2 ! +-24 ! ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------------------------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 19 no ..... ..... 19 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! +----26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 ! ! ! +--H023 +--1 +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +-----------------------------------------------------------------------------------------------------H030 ! ! ! ! +--H035 +-27 +----------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +-----H030 -35 +----------------------------------------------------------------------------------------------27 ! ! ! +--H035 ! ! +-22 ! ! +--H007 +-17 ! +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-------10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H031 ! +----------------------------------------------------28 ! ! ! +--H005 ! ! +-30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H012 ! ! +-29 ! ! ! +-----H009 ! ! +-16 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! +-27 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +-25 ! ! ! +-----------------------------------------------------------------------------------H031 ! ! ! +--2 ! +--------------------H032 ! ! +----------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +-28 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 1 no ..... ..... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----------------------19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-28 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H031 +----------------------19 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 28 maybe ..... ..?.. 28 H031 maybe ..... ..1.. 28 14 yes ..... ...1. 14 H024 maybe ..... ..0.. 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 +--1 ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------------H031 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------28 ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +-----------------------H031 ! ! +----------------------------------------------------------28 ! ! ! ! +--------------------H032 ! ! ! +-24 ! ! ! ! +-----------------H016 +--2 ! +--7 ! ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------------------------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H031 ! +----------------------------------------------------28 ! ! ! +--H005 ! ! +-30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H011 +--3 ! ! +-31 ! ! ! ! +-----H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 +--1 ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H012 ! ! +-29 ! ! ! +-----H009 +--1 +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 ! +----27 -35 ! +--H006 ! +-------------------------------------------------------------------------------------------10 ! ! ! +--H025 ! ! +----25 ! ! +--H004 +--2 ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--------H030 ! +-------------------------------------------------------------------------------------------27 -35 ! ! +-----H006 ! ! +-10 ! ! ! +--H025 ! ! +-25 +--2 +--H004 ! ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--------H006 ! +-------------------------------------------------------------------------------------------10 -35 ! ! +-----H030 ! ! +-27 ! ! ! +--H025 ! ! +-25 +--2 +--H004 ! ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H025 -35 +-------------------------------------------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H025 ! +-------------------------------------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 2 no ..... ..... 2 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... ALTree-v1.3.2/test/phylip/outgroup_absent/association/outtree000066400000000000000000000631301412112337500244530ustar00rootroot00000000000000(OUTG,((H030,H006),((H035,H007),((H023,H026),((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H023,(H026,((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,H031),((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H031,(H005,((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H005,(H031,((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H008,(H025,H004)),((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(((H005,H031),(H008,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H005,H031),((H025,H004),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H025,H004),((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,(((H005,H031),(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H031,(H005,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H005,(H031,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H032,(H016,((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,H003),((H033,H010),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,(H003,((H033,H010),((H014,H017),H027))))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H033,H010),((H011,H003),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,((H033,H010),(H003,((H014,H017),H027))))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(((H011,H003),(H033,H010)),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H003,(H011,(H033,H010))),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,(H003,(H033,H010))),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,((H003,(H033,H010)),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; 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(OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H028,H001),(H015,H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H001,(H028,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,(H008,((H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))),((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H008,(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))),((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,(((H032,H016),(H021,(H002, (H009,(H012,(H023,H026)))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,(H030,((H035,H007),(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H030,(H035,H007)),(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H031,(H005,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H012,(H009,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,(H031,((H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))),((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H008),(H024,(H031,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H008),(H031,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(H031,((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H031,(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026)))))))),((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H031,(H005,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H011,(H003,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(H008,((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H012,(H009,(H023,H026))))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,(((H030,H006),(H025,H004)),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,(H006,(H025,H004))),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H006,(H030,(H025,H004))),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H025,H004),((H030,H006),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H025,H004),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; ALTree-v1.3.2/test/phylip/outgroup_absent/association/run_altree000077500000000000000000000007631412112337500251320ustar00rootroot00000000000000#!/bin/sh -x # To run phylip # Options "5" and option "o - 36" (the 36th sequence is the outgroup) phylip mix #To perform the association test. # The outgroup is removed from the analysis (option # --remove-outgroup). The name of the outgroup must be specified so that # the program can identify the outgroup sequence altree -i outfile -j nb_cas_controls.txt --data-qual qualitative \ -a -t SNP -p phylip --outgroup OUTG --remove-outgroup -r 1 \ --tree-to-analyse 1 -o 1_trio_phy.asso ALTree-v1.3.2/test/phylip/outgroup_absent/association/trio.phy000066400000000000000000000014441412112337500245400ustar00rootroot00000000000000 36 10 H019 0100101111 H026 0111010001 H004 0100110001 H020 1000011110 H034 0100011110 H027 1111001110 H023 1111010001 H016 0101100001 H002 1111100001 H015 1000011101 H006 1000010001 H001 1000011111 H010 1101011110 H028 1000011011 H024 0100100011 H017 1111011111 H009 1111000101 H007 1101010001 H033 0101011110 H008 0100100001 H029 0100011111 H003 1101111111 H035 1101010000 H013 0100101110 H032 0101101001 H025 0100010001 H021 0111100101 H030 1100010011 H031 0100100101 H012 1111000001 H005 0100100000 H011 1101011111 H022 0100111110 H014 0111011111 H018 1100011111 OUTG 1100010001 ALTree-v1.3.2/test/phylip/outgroup_present/000077500000000000000000000000001412112337500207265ustar00rootroot00000000000000ALTree-v1.3.2/test/phylip/outgroup_present/association/000077500000000000000000000000001412112337500232425ustar00rootroot00000000000000ALTree-v1.3.2/test/phylip/outgroup_present/association/1_trio_phy.asso000066400000000000000000000221641412112337500262130ustar00rootroot00000000000000 /----* OUTG (LEVEL: 1) case/control:4/4 |----* H030 (LEVEL: 1) case/control:1/1 | Site: 9 Sens: 0-->1 -----* 35+(10+(27)) (LEVEL: 0) case/control:204/204 | | [0] ddl=3 chi2=0.43 p_value_chi2=0.948 | [1] ddl=5 chi2=3.49 p_value_chi2=0.696 | [2] ddl=7 chi2=7.31 p_value_chi2=0.38 | [3] ddl=9 chi2=9.87 p_value_chi2=0.343 | [4] ddl=10 chi2=12.35 p_value_chi2=0.209 | [5] ddl=11 chi2=18.26 p_value_chi2=0.04 | [6] ddl=13 chi2=19.27 p_value_chi2=0.058 | [7] ddl=17 chi2=27.25 p_value_chi2=0.025 | [8] ddl=19 chi2=31.34 p_value_chi2=0.016 | [9] ddl=20 chi2=31.42 p_value_chi2=0.021 | [10] ddl=21 chi2=39.94 p_value_chi2=0.001 | [11] ddl=22 chi2=50.63 p_value_chi2=0 | [12] ddl=24 chi2=52.79 p_value_chi2=0 | [13] ddl=26 chi2=53.21 p_value_chi2=0 | [14] ddl=28 chi2=54.70 p_value_chi2=0.001 | [15] ddl=33 chi2=66.05 p_value_chi2=0 | [16] ddl=35 chi2=68.34 p_value_chi2=0 |----* H006 (LEVEL: 1) case/control:23/19 | Site: 2 Sens: 1-->0 | /----* H035 (LEVEL: 2) case/control:1/0 | | Site: 10 Sens: 1-->0 | |----* H007 (LEVEL: 2) case/control:25/36 \----* 17+(22) (LEVEL: 1) case/control:176/180 | Site: 4 Sens: 0-->1 | /----* H023 (LEVEL: 3) case/control:1/5 | |----* H026 (LEVEL: 3) case/control:1/0 | | Site: 1 Sens: 1-->0 \----* 1+(6) (LEVEL: 2) case/control:150/144 | Site: 3 Sens: 0-->1 | /----* H012 (LEVEL: 4) case/control:1/2 | |----* H009 (LEVEL: 4) case/control:5/10 | | Site: 8 Sens: 0-->1 \----* 16+(29) (LEVEL: 3) case/control:148/139 | Site: 6 Sens: 1-->0 | /----* H002 (LEVEL: 5) case/control:9/3 \----* 8 (LEVEL: 4) case/control:142/127 | Site: 5 Sens: 0-->1 | /----* H021 (LEVEL: 6) case/control:11/2 | | Site: 8 Sens: 0-->1 \----* 26 (LEVEL: 5) case/control:133/124 | Site: 1 Sens: 1-->0 | /----* H032 (LEVEL: 7) case/control:0/1 | | Site: 7 Sens: 0-->1 | |----* H016 (LEVEL: 7) case/control:2/2 \----* 7+(24) (LEVEL: 6) case/control:122/122 | Site: 3 Sens: 1-->0 | /----* H025 (LEVEL: 9) case/control:2/3 | | Site: 5 Sens: 1-->0 | /----* 25 (LEVEL: 8) case/control:13/5 | | | Site: 6 Sens: 0-->1 | | \----* H004 (LEVEL: 9) case/control:11/2 | |----* H008 (LEVEL: 8) case/control:28/19 | |----* H005 (LEVEL: 8) case/control:2/2 | | Site: 10 Sens: 1-->0 \----* 2+(19+(28+(30))) (LEVEL: 7) case/control:120/119 | Site: 4 Sens: 1-->0 |----* H031 (LEVEL: 8) case/control:1/0 | Site: 8 Sens: 0-->1 | /----* H024 (LEVEL: 9) case/control:1/0 \----* 14 (LEVEL: 8) case/control:76/93 | Site: 9 Sens: 0-->1 | /----* H013 (LEVEL: 11) case/control:15/5 | /----* 23 (LEVEL: 10) case/control:72/90 | | | Site: 10 Sens: 1-->0 | | | /----* H022 (LEVEL: 12) case/control:9/1 | | \----* 32 (LEVEL: 11) case/control:57/85 | | | Site: 6 Sens: 0-->1 | | | /----* H033 (LEVEL: 14) case/control:0/1 | | | /----* 18 (LEVEL: 13) case/control:1/4 | | | | | Site: 4 Sens: 0-->1 | | | | \----* H010 (LEVEL: 14) case/control:1/3 | | | | Site: 1 Sens: 0-->1 | | | |----* H034 (LEVEL: 13) case/control:1/0 | | \----* 4+(12) (LEVEL: 12) case/control:48/84 | | | Site: 5 Sens: 1-->0 | | | /----* H029 (LEVEL: 14) case/control:1/3 | | \----* 20 (LEVEL: 13) case/control:46/80 | | | Site: 10 Sens: 0-->1 | | | /----* H018 (LEVEL: 15) case/control:2/2 | | | | /----* H011 (LEVEL: 16) case/control:3/8 | | | | |----* H003 (LEVEL: 16) case/control:2/0 | | | | | Site: 5 Sens: 0-->1 | | | |----* 21+(31) (LEVEL: 15) case/control:8/21 | | | | | Site: 4 Sens: 0-->1 | | | | | /----* H014 (LEVEL: 17) case/control:2/3 | | | | | | Site: 1 Sens: 1-->0 | | | | | |----* H017 (LEVEL: 17) case/control:0/8 | | | | \----* 15+(33) (LEVEL: 16) case/control:3/13 | | | | | Site: 3 Sens: 0-->1 | | | | \----* H027 (LEVEL: 17) case/control:1/2 | | | | Site: 6 Sens: 1-->0 | | | | Site: 10 Sens: 1-->0 | | \----* 5+(34) (LEVEL: 14) case/control:45/77 | | | Site: 1 Sens: 0-->1 | | | /----* H001 (LEVEL: 16) case/control:24/39 | | | |----* H015 (LEVEL: 16) case/control:2/6 | | | | Site: 9 Sens: 1-->0 | | \----* 9+(11)+(13) (LEVEL: 15) case/control:35/54 | | | Site: 2 Sens: 1-->0 | | |----* H028 (LEVEL: 16) case/control:4/0 | | | Site: 8 Sens: 1-->0 | | \----* H020 (LEVEL: 16) case/control:5/9 | | Site: 10 Sens: 1-->0 \----* 3 (LEVEL: 9) case/control:75/93 | Site: 8 Sens: 0-->1 | Site: 7 Sens: 0-->1 \----* H019 (LEVEL: 10) case/control:3/3 Number of permutation: 1 p_val for each level: level 1 p-value (non corrected) 0 level 2 p-value (non corrected) 0 level 3 p-value (non corrected) 0 level 4 p-value (non corrected) 0 level 5 p-value (non corrected) 0 level 6 p-value (non corrected) 0 level 7 p-value (non corrected) 0 level 8 p-value (non corrected) 0 level 9 p-value (non corrected) 0 level 10 p-value (non corrected) 0 level 11 p-value (non corrected) 0 level 12 p-value (non corrected) 0 level 13 p-value (non corrected) 0 level 14 p-value (non corrected) 0 level 15 p-value (non corrected) 0 level 16 p-value (non corrected) 0 level 17 p-value (non corrected) 0 corrected minimal p_value in the tree: 0 ALTree-v1.3.2/test/phylip/outgroup_present/association/nb_cas_controls.txt000066400000000000000000000010431412112337500271510ustar00rootroot00000000000000H019 m003 c003 H026 m001 c000 H004 m011 c002 H020 m005 c009 H034 m001 c000 H027 m001 c002 H023 m001 c005 H016 m002 c002 H002 m009 c003 H015 m002 c006 H006 m023 c019 H001 m024 c039 H010 m001 c003 H028 m004 c000 H024 m001 c000 H017 m000 c008 H009 m005 c010 H007 m025 c036 H033 m000 c001 H008 m028 c019 H029 m001 c003 H003 m002 c000 H035 m001 c000 H013 m015 c005 H032 m000 c001 H025 m002 c003 H021 m011 c002 H030 m001 c001 H031 m001 c000 H012 m001 c002 H005 m002 c002 H011 m003 c008 H022 m009 c001 H014 m002 c003 H018 m002 c002 OUTG m004 c004 ALTree-v1.3.2/test/phylip/outgroup_present/association/outfile000066400000000000000000036653761412112337500246660ustar00rootroot00000000000000 Mixed parsimony algorithm, version 3.69 Wagner parsimony method 100 trees in all found +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +--H023 ! +--------------------------------------------------------------------------------------6 ! ! +--H026 ! ! +-----1 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +----16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H023 ! ! +-----6 +--------------------------------------------------------------------------------------H026 ! ! +--1 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 6 yes ..1.. ..... 6 H023 no ..... ..... 6 1 no ..... ..... 1 H026 yes 0.... ..... 1 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! +-24 +-----------------------------------------------------------------H031 ! ! ! ! +--------------------------------------------------------------H005 +-28 ! ! ! +-----H008 ! ! +----------------------------------------------------19 ! ! ! ! +--H025 +-30 ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! +-24 +-----------------------------------------------------------------H005 ! ! ! ! +--------------------------------------------------------------H031 +-30 ! ! ! +-----H008 ! ! +----------------------------------------------------19 ! ! ! ! +--H025 +-28 ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 30 yes ...0. ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----H008 ! ! +----------------------------------------------------------19 +-24 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--H005 +--2 +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +--H005 ! ! +-------30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-24 ! ! +-----H008 ! ! +----19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--H025 ! ! +----------------------------------------------------25 +-28 ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-----2 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--H025 ! ! +----------------------------------------------------------25 +-19 ! +--H004 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +--2 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----------------------------------------------------------------H008 ! ! ! +-24 ! +--H005 ! ! +----30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-19 ! ! +--H025 ! ! +----25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +--2 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--------H031 ! ! +----------------------------------------------------28 ! ! ! ! +-----H005 +-19 ! +-30 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------------H008 +-24 ! ! ! +--------H005 ! ! +----------------------------------------------------30 ! ! ! ! +-----H031 +-19 ! +-28 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 2 no ..... ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +--H032 +-26 +-------------------------------------------------------------------24 ! ! +--H016 ! ! +--7 +--H025 ! +-------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------------H032 ! ! ! ! +--H025 +-24 +-------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H032 ! ! +-24 +--------------------------------------------------------------------H016 ! ! ! ! +--H025 +--7 +-------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 24 yes ..0.. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 2 yes ...0. ..... 2 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! +----------34 +-------------31 ! ! +-20 ! ! ! +--H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H033 ! ! ! ! ! +-------18 ! ! ! ! ! ! +--H010 +--3 ! ! +----12 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H033 ! ! ! ! ! +-------18 ! ! ! ! ! ! +--H010 +--3 ! ! +-12 ! +--5 ! +--H014 ! ! ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 maybe ..... ....? 12 18 maybe ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 maybe ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! ! +----------34 +-------------18 ! ! +-20 ! ! ! +--H010 ! ! ! ! ! ! ! ! ! ! +-12 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +----21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--H033 ! ! ! ! ! +----------18 ! ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! ! +--------H003 +--3 ! ! ! ! ! +--5 +----21 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 12 no ..... ..... 12 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! ! +----31 ! ! +-20 +----------34 ! +--H003 ! ! ! ! ! +-------21 ! ! ! ! ! ! ! +--H033 ! ! ! ! ! ! +----18 ! ! ! ! +-12 +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H003 ! ! ! ! +----------34 +-------21 ! ! +-20 ! ! ! ! +-----H011 ! ! ! ! ! ! +-31 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! ! ! +-----H003 ! ! ! ! +-31 +-------21 ! ! ! ! ! ! ! +--H033 ! ! ! ! ! ! +-18 ! ! ! ! +-12 +--H010 +--3 ! ! ! ! +--5 ! +--H014 ! ! ! +-33 ! ! +-------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 12 no ..... ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +-----H003 ! ! ! ! +----------34 +----------21 ! ! +-20 ! ! ! ! +--H033 ! ! ! ! ! ! +-18 ! ! ! ! +-12 +--H010 ! ! ! ! ! ! ! ! ! ! +--------H011 +--3 ! ! ! ! ! ! ! +-------31 +--H014 ! +--5 ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H012 ! ! +-29 +--------------------------------------------------------------------------------H009 ! ! +-16 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--------H011 ! ! ! ! +----------34 +-------31 ! ! +-20 ! ! ! ! +-----H003 ! ! ! ! ! ! +-21 ! ! ! ! ! ! ! +--H033 ! ! ! ! +-12 +-18 ! ! ! ! ! +--H010 +--3 ! ! ! ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----------15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 29 yes ..... 0.... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 12 yes ...1. ..... 12 31 no ..... ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +-----------H033 ! ! ! ! ! ! ! ! ! ! +-18 +--------H010 +--3 ! ! ! ! ! +--5 +-12 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 18 yes ..... ....0 18 H033 yes 0.... ..... 18 12 no ..... ..... 12 H010 no ..... ..... 12 15 yes ..1.. ..... 15 33 yes ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +-----------------------------------------------------------------------------------H009 ! ! +-16 +--------------------------------------------------------------------------------H012 ! ! +-29 +-----------------------------------------------------------------------------H002 ! ! +--8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! +----------34 +-----------------H011 ! ! ! ! ! ! ! ! ! +-20 ! +-31 +--------------H003 ! ! ! ! ! ! ! ! ! ! +-21 +-----------H010 ! ! ! ! ! ! ! ! ! ! +-12 +--------H033 +--3 ! ! ! ! ! +--5 +-18 +--H014 ! ! ! +-33 ! ! +-15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 12 yes ..... ....0 12 H010 no ..... ..... 12 18 no ..... ..... 18 H033 yes 0.... ..... 18 15 yes ..1.. ..... 15 33 yes ..... ....1 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----------------------------------H029 +-------------14 ! ! ! ! ! ! +--4 ! +--------------------H018 ! ! ! ! ! ! ! ! ! ! +--H011 ! ! ! ! +----------34 +-------------31 ! ! +-20 ! ! ! +--H003 ! ! ! ! ! ! ! ! ! ! +-21 +--H014 ! ! ! ! ! +-------33 ! ! ! ! ! ! +--H017 +--3 ! ! +----15 ! ! ! ! +--H033 ! +--5 ! +-18 ! ! +----12 +--H010 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 maybe ..?.. ..... 15 33 maybe ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 12 yes ..... ....0 12 18 maybe ..0.. ..... 18 H033 yes 0.... ..... 18 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +-----H008 ! ! +----------------------------------------------------------19 +-24 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--H005 +--2 +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +----14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +--H005 ! ! +-------30 ! ! ! +--H031 ! ! +----------------------------------------------------28 +-24 ! ! +-----H008 ! ! +----19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 +--2 ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H031 ! ! +----------------------------------------------------28 ! ! ! ! +--------H005 ! ! ! +-30 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-------------14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------------H016 ! ! ! ! +--------------------------------------------------------------------H032 +--7 ! ! ! +--H005 ! ! +-------------------------------------------------------------30 +-24 ! +--H031 ! ! ! ! +-----H008 ! ! +----------------------------------------------------19 +-28 ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! ! ! +--------------------------------------------------H024 ! ! ! +-----2 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-------14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 28 yes ...0. ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 2 no ..... ..... 2 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------------H021 ! ! ! ! +-----------------------------------------------------------------------H016 +-26 ! ! ! +--------------------------------------------------------------------H032 ! ! ! +--7 ! +-----------H005 ! ! +----------------------------------------------------30 ! ! ! ! +--------H031 ! ! ! +-28 +-24 ! ! +-----H008 ! ! +-19 ! ! ! +--H025 ! ! +-25 ! ! +--H004 ! ! +--2 +--------------------------------------------------H024 ! ! ! ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-------------14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 2 yes ...0. ..... 2 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 25 yes ..... 1.... 25 H025 yes ....0 ..... 25 H004 no ..... ..... 2 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! +----------------13 ! ! +-----H015 ! +--9 ! ! +--H001 ! +-11 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H015 ! +--------------9 ! ! +-----H001 ! +-11 ! ! +--H028 ! +-13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-22 ! +----------------------------------------------------------------------------------------------17 +--H007 ! ! ! ! ! +-----H006 +-10 ! +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-------27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +-----------------------------------------------------------------------------------------------------H006 ! ! ! ! +--H035 +-10 +----------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H015 ! ! ! ! +--------------9 +--H028 ! ! +-13 ! +-11 +--H001 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H015 ! +--------------9 ! ! +-----H028 ! +-13 ! ! +--H001 ! +-11 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 ! +----22 -35 ! +--H007 ! +-------------------------------------------------------------------------------------------17 ! ! ! +--H030 ! ! +----27 ! ! +--H006 +-10 ! +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----------25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 ! ! ! +--H023 +--1 +-----6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-------14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +----25 ! ! ! +--H005 ! ! +-------------------------------------------------------------------------------30 ! ! ! +--H031 +--2 ! ! ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------7 +-28 ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +-----1 ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 1 no ..... ..... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! ! ! +--H035 +-10 +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----17 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! ! ! ! +--H005 +----25 ! +----------------------30 ! ! ! +--H031 ! ! ! ! ! +-------------------------------------------------------28 +--H032 ! ! ! ! +----------------24 +--2 ! ! ! +--H016 ! ! +-----7 ! ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 +--1 ! ! +--H009 ! +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------------19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 +--2 ! ! +--------------H021 ! ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H035 ! +-------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +----17 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! ! ! ! +----------------13 +--H001 ! ! +-11 ! +--9 +--H015 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +--------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H001 ! ! +-11 ! ! ! ! +--H028 ! +--------------9 +-13 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--------------------------------------H034 ! ! ! +-32 ! ! ! ! ! ! +-----H033 +-14 ! ! ! +----------------------------18 ! ! +--4 ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! ! ! ! ! +--5 +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 +--3 +-------20 ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! ! ! +----33 ! +-15 +--H017 ! ! ! ! +--H028 ! ! +-13 ! ! +-11 +--H001 ! ! ! ! ! +--------------9 +-----H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 11 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H032 ! ! ! ! ! +-------------------------------------------------------------24 +-----------------H016 ! ! ! ! ! +--2 ! +--7 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +--------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! ! ! +--H033 ! ! ! +-32 +----------------------------------18 ! ! ! ! ! +--H010 +-14 ! ! ! ! ! +-12 +--------------------------------H034 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-----4 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 12 yes ....0 ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 4 no ..... ..... 4 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +-----H017 ! ! ! +----15 ! +--5 ! +--H014 ! ! +-33 ! ! +--H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 H017 no ..... ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +--H033 +-14 ! +--4 +-------------------------------18 ! ! ! ! +--H010 ! ! ! ! ! ! ! ! +-----------------------------H029 ! ! +-12 ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +----20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +-----H014 ! ! ! +----33 ! +--5 ! +--H017 ! ! +-15 ! ! +--H027 ! ! ! ! +-----H028 ! ! +-13 ! ! ! ! +--H001 ! +-----------------9 +-11 ! ! +--H015 ! ! ! +--------H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 15 no ..... ..... 15 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! ! ! ! ! +----26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 ! ! +-16 +--1 ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +-14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 ! ! ! ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! +--5 ! +-33 ! ! +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--------H028 ! +----------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H001 ! +-------------11 ! ! +-----H015 ! +--9 ! ! +--H028 ! +-13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--------H001 ! ! ! ! +-------------11 +--H028 ! ! +-13 ! +--9 +--H015 ! ! ! +-----H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H028 ! ! +----13 ! ! ! +--H001 ! +-------------11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! ! ! ! +--H014 ! +-15 +----33 ! ! +--H017 ! ! ! ! +--H028 ! ! +----13 ! ! ! +--H001 ! +-------------11 ! ! +--H015 ! +-----9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H001 ! +-------------11 ! ! +-----H028 ! +-13 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 11 yes .0... ..... 11 H001 no ..... ..... 11 13 no ..... ..... 13 H028 yes ..... ..0.. 13 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! +-10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +-25 ! ! ! +-----------------------------------------------------------------------------------H008 ! ! ! +--2 ! +--------------------H016 ! ! +-----------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +-19 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 19 yes ..... 0.... 19 H008 no ..... ..... 19 1 no ..... ..... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +-----------------------H008 ! ! +----------------------------------------------------------19 ! ! ! ! +--------------------H016 ! ! ! +--7 ! ! ! ! +-----------------H032 +--2 ! +-24 ! ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------------------------28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 19 no ..... ..... 19 H008 no ..... ..... 19 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--H032 ! ! +----------------24 ! ! ! +--H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +--------------H021 +--2 ! +----26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 ! ! ! +--H023 +--1 +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H035 -35 +-------------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +----25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +-----------------------------------------------------------------------------------------------------H030 ! ! ! ! +--H035 +-27 +----------------------------------------------------------------------------------------------22 ! ! +--H007 ! ! +-17 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +----10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 27 no ..... ..... 27 H030 yes ..... ...1. 27 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +-----H030 -35 +----------------------------------------------------------------------------------------------27 ! ! ! +--H035 ! ! +-22 ! ! +--H007 +-17 ! +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-------10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H031 ! +----------------------------------------------------28 ! ! ! +--H005 ! ! +-30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H012 ! ! +-29 ! ! ! +-----H009 ! ! +-16 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! +-27 +-----------------------------------------------------------------------------------------H025 ! ! ! ! +--------------------------------------------------------------------------------------H004 +-25 ! ! ! +-----------------------------------------------------------------------------------H031 ! ! ! +--2 ! +--------------------H032 ! ! +----------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 ! ! ! ! +--------------H021 +-28 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----------------------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 28 yes ..... 0.... 28 H031 yes ..... ..1.. 28 1 no ..... ..... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H024 +----------------------19 ! ! ! +--------------------------------------------------H031 ! ! ! ! ! ! +--------------------------------------------H013 +----14 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-28 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 maybe ..... ...?. 14 H024 maybe ..... ...1. 14 28 yes ..... ..1.. 28 H031 maybe ..... ...0. 28 3 yes ..... .1.1. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H008 ! ! ! ! +-----------------------------------------------------H031 +----------------------19 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 28 maybe ..... ..?.. 28 H031 maybe ..... ..1.. 28 14 yes ..... ...1. 14 H024 maybe ..... ..0.. 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H032 ! ! +-------------------------------------------------------------24 ! ! ! ! +-----------------H016 ! ! ! +--7 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 +--1 ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------------H031 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------28 ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 H031 yes ..... ..1.. 28 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H006 ! ! +----10 +--------------------------------------------------------------------------------------------H030 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-27 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +-----------------------H031 ! ! +----------------------------------------------------------28 ! ! ! ! +--------------------H032 ! ! ! +-24 ! ! ! ! +-----------------H016 +--2 ! +--7 ! ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +----------------------------------------------------30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-------------------------19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 28 no ..... ..... 28 H031 yes ..... ..1.. 28 24 yes ...1. ..... 24 H032 yes ..... .1... 24 7 no ..... ..... 7 H016 no ..... ..... 7 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H031 ! +----------------------------------------------------28 ! ! ! +--H005 ! ! +-30 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 H031 yes ..... ..1.. 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H003 +--3 ! ! +-21 ! ! ! ! +-----H011 ! ! ! +-31 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 H003 yes ....1 ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-30 ! +----------------------------------------------------28 +--H031 ! ! ! ! ! +-----H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! +----------34 ! ! +-------20 ! ! +--------H011 +--3 ! ! +-31 ! ! ! ! +-----H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +-33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 31 yes ...1. ..... 31 H011 no ..... ..... 31 21 no ..... ..... 21 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 ! ! ! ! +--------------H021 +--2 ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 ! ! +-29 +--1 ! +--H023 ! +--6 ! +--H026 ! ! +-----H005 ! +----------------------------------------------------30 ! ! ! +--H031 ! ! +-28 ! ! +--H008 ! ! ! ! +--------------------------------------------------H024 ! ! ! +----------------------19 ! +--------------------------------------------H013 ! ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-------14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 30 no ..... ..... 30 H005 yes ..... ....0 30 28 no ..... ..... 28 H031 yes ..... ..1.. 28 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 +--1 ! +-----H012 ! +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +-----------------------------------------------------------H008 ! ! ! ! +--H005 ! ! +----------------------------------------------------30 +----------------------19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +----14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 19 no ..... ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! ! ! ! +--------------------------------------------------------------7 +-----------------H032 ! ! ! ! ! +--2 ! +-24 +--------------H021 ! ! ! ! ! ! +-26 +-----------H002 ! ! ! ! ! ! +--8 +--H012 ! ! ! +----29 ! ! ! ! +--H009 +--1 +-16 ! ! +--H023 ! +-----6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H009 ! ! +-16 ! ! ! +-----H012 +--1 +-29 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 16 yes ....0 ..... 16 H009 yes ..... ..1.. 16 29 no ..... ..... 29 H012 no ..... ..... 29 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! -35 +--H035 ! +-------------------------------------------------------------------------------------------------22 ! ! +--H007 +-17 ! +-----------------------------------------------------------------------------------------------H030 ! ! +----27 +--------------------------------------------------------------------------------------------H006 ! ! ! ! +-----------------------------------------------------------------------------------------H025 +-10 ! ! ! +--------------------------------------------------------------------------------------H004 ! ! ! +-25 ! +--------------------H016 ! ! +--------------------------------------------------------------7 ! ! ! ! +-----------------H032 ! ! ! +-24 +--2 ! ! +--------------H021 ! ! +-26 ! ! ! +-----------H002 ! ! +--8 ! ! ! +--------H012 ! ! +-29 ! ! ! +-----H009 +--1 +-16 ! ! +--H023 ! +--6 ! +--H026 ! ! +--H005 ! +-------------------------------------------------------30 ! ! +--H031 ! ! ! ! +-----------------------------------------------------H008 +----------------------28 ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +----19 ! ! ! ! +-23 +-----------------------------------------H022 ! ! ! ! ! ! ! ! +-32 +--------------------------------------H034 ! ! ! ! ! ! ! ! ! ! +-----H033 +-14 ! +--4 +----------------------------18 ! ! ! ! ! +--H010 ! ! ! ! +-12 ! ! ! ! +--H027 ! ! +--5 ! ! ! +--------------------------H029 ! ! ! ! ! ! ! ! +-----------H018 ! ! ! ! ! ! ! +-------20 +----------34 +--H011 +--3 ! ! ! +----31 ! ! ! ! ! +--H003 ! ! ! +-21 ! +-15 ! +--H014 ! ! +----33 ! ! +--H017 ! ! ! ! +--------H028 ! +-------------13 ! ! +-----H001 ! +-11 ! ! +--H015 ! +--9 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 17 no ..... ..... 17 22 yes ...1. ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 2 yes ....1 ..... 2 H004 no ..... ..... 2 1 yes ..... 0.... 1 7 yes ...1. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 26 yes ..1.. ..... 26 H021 yes ..... ..1.. 26 8 yes 1.... ..... 8 H002 no ..... ..... 8 29 yes ....0 ..... 29 H012 no ..... ..... 29 16 no ..... ..... 16 H009 yes ..... ..1.. 16 6 yes ..... 1.... 6 H023 no ..... ..... 6 H026 yes 0.... ..... 1 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 19 no ..... ..... 19 H008 no ..... ..... 19 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 H034 no ..... ..... 4 5 no ..... ..... 5 18 yes ...1. ..... 18 H033 no ..... ..... 18 12 yes 1.... ..... 12 H010 no ..... ..... 12 H027 yes ..1.. 0.... 5 20 yes ..... ....1 20 H029 no ..... ..... 20 15 yes 1.... ..... 15 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 33 yes ..1.. ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 13 yes .0... ..... 13 H028 yes ..... ..0.. 13 11 no ..... ..... 11 H001 no ..... ..... 11 9 no ..... ..... 9 H015 yes ..... ...0. 9 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 ! +----27 -35 ! +--H006 ! +-------------------------------------------------------------------------------------------10 ! ! ! +--H025 ! ! +----25 ! ! +--H004 +--2 ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--------H030 ! +-------------------------------------------------------------------------------------------27 -35 ! ! +-----H006 ! ! +-10 ! ! ! +--H025 ! ! +-25 +--2 +--H004 ! ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 27 no ..... ..... 27 H030 yes ..... ...1. 27 10 no ..... ..... 10 H006 yes .0... ..... 10 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--------H006 ! +-------------------------------------------------------------------------------------------10 -35 ! ! +-----H030 ! ! +-27 ! ! ! +--H025 ! ! +-25 +--2 +--H004 ! ! +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----------17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 10 no ..... ..... 10 H006 yes .0... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H025 -35 +-------------------------------------------------------------------------------------------------25 ! ! +--H004 ! ! +--2 +--H030 ! +-------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +----10 +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 2 no ..... ..... 2 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... +--------------------------------------------------------------------------------------------------------OUTG ! ! +--H030 -35 +-------------------------------------------------------------------------------------------------27 ! ! +--H006 ! ! +-10 +--H025 ! +-------------------------------------------------------------------------------------------25 ! ! +--H004 ! ! +-----2 +--H035 ! +-------------------------------------------------------------------------------------22 ! ! +--H007 +----17 ! +-----------------------------------------------------------------------------------H026 ! ! +-----1 +--------------------------------------------------------------------------------H023 ! ! +--6 +--H012 ! +-------------------------------------------------------------------------29 ! ! +--H009 +-16 ! +-----------------------------------------------------------------------H002 ! ! +-----8 +--------------------------------------------------------------------H021 ! ! +-26 +-----------------------------------------------------------------H016 ! ! +--7 +--------------------------------------------------------------H032 ! ! ! ! +-----------------------------------------------------------H008 +-24 ! ! ! +--H005 ! ! +----------------------------------------------------30 +-19 ! +--H031 ! ! ! ! +--------------------------------------------------H024 ! ! ! ! ! ! +--------------------------------------------H013 +-28 ! ! ! ! ! +-----------------------------------------H022 ! ! +-23 ! ! ! ! ! ! +--H033 ! ! ! ! ! +-18 ! ! ! +-32 +-------------------------------12 +--H010 +----14 ! ! ! ! ! ! ! ! +-----H034 ! ! ! ! ! ! +--4 +-----------------------------H029 ! ! ! ! ! ! ! ! +--------------H018 ! ! ! ! ! ! ! ! ! +----------34 +--H011 ! ! +-------20 ! ! +-------31 ! ! ! ! ! ! +--H003 +--3 ! ! +-21 ! ! ! ! +--H014 ! ! ! ! +-33 ! +--5 +----15 +--H017 ! ! ! ! ! +-----H027 ! ! ! ! +--H001 ! ! +----11 ! ! ! +--H015 ! +-----------------9 ! ! +--H028 ! +----13 ! +--H020 ! +-----------------------------------------------H019 remember: (although rooted by outgroup) this is an unrooted tree! requires a total of 38.000 best guesses of ancestral states: 0 1 2 3 4 5 6 7 8 9 *-------------------- 0! 1 1 0 0 0 1 0 0 0 10! 1 From To Any Steps? State at upper node ( . means same as in the node below it on tree) root 35 no ..... ..... 35 OUTG no ..... ..... 35 10 no ..... ..... 10 27 no ..... ..... 27 H030 yes ..... ...1. 27 H006 yes .0... ..... 10 2 no ..... ..... 2 25 yes 0.... ..... 25 H025 no ..... ..... 25 H004 yes ....1 ..... 2 17 yes ...1. ..... 17 22 no ..... ..... 22 H035 yes ..... ....0 22 H007 no ..... ..... 17 1 yes ..1.. ..... 1 H026 yes 0.... ..... 1 6 no ..... ..... 6 H023 no ..... ..... 6 16 yes ..... 0.... 16 29 no ..... ..... 29 H012 no ..... ..... 29 H009 yes ..... ..1.. 16 8 yes ....1 ..... 8 H002 no ..... ..... 8 26 yes 0.... ..... 26 H021 yes ..... ..1.. 26 7 yes ..0.. ..... 7 H016 no ..... ..... 7 24 no ..... ..... 24 H032 yes ..... .1... 24 19 yes ...0. ..... 19 H008 no ..... ..... 19 28 no ..... ..... 28 30 no ..... ..... 30 H005 yes ..... ....0 30 H031 yes ..... ..1.. 28 14 yes ..... ...1. 14 H024 no ..... ..... 14 3 yes ..... .11.. 3 23 yes ..... ....0 23 H013 no ..... ..... 23 32 yes ..... 1.... 32 H022 no ..... ..... 32 4 yes ....0 ..... 4 12 no ..... ..... 12 18 yes ...1. ..... 18 H033 no ..... ..... 18 H010 yes 1.... ..... 12 H034 no ..... ..... 4 20 yes ..... ....1 20 H029 no ..... ..... 20 5 yes 1.... ..... 5 34 no ..... ..... 34 H018 no ..... ..... 34 21 yes ...1. ..... 21 31 no ..... ..... 31 H011 no ..... ..... 31 H003 yes ....1 ..... 21 15 yes ..1.. ..... 15 33 no ..... ..... 33 H014 yes 0.... ..... 33 H017 no ..... ..... 15 H027 yes ..... 0...0 5 9 yes .0... ..... 9 11 no ..... ..... 11 H001 no ..... ..... 11 H015 yes ..... ...0. 9 13 no ..... ..... 13 H028 yes ..... ..0.. 13 H020 yes ..... ....0 3 H019 no ..... ..... ALTree-v1.3.2/test/phylip/outgroup_present/association/outtree000066400000000000000000000631301412112337500246570ustar00rootroot00000000000000(OUTG,((H030,H006),((H035,H007),((H023,H026),((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H023,(H026,((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,H031),((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H031,(H005,((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H005,(H031,((H008,(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H008,(H025,H004)),((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(((H005,H031),(H008,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H005,H031),((H025,H004),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H025,H004),((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,(((H005,H031),(H025,H004)),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H031,(H005,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,(H008,((H005,(H031,(H025,H004))),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, ((H032,H016),((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H032,(H016,((H025,H004),(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,H003),((H033,H010),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,(H003,((H033,H010),((H014,H017),H027))))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H033,H010),((H011,H003),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,((H033,H010),(H003,((H014,H017),H027))))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(((H011,H003),(H033,H010)),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H003,(H011,(H033,H010))),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,((H012,H009),(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,((H011,(H003,(H033,H010))),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))[0.0100]; (OUTG,((H030,H006),((H035,H007),(H026,(H023,(H009,(H012,(H002,(H021, (H016,(H032,((H005,(H031,(H008,(H025,H004)))),(H024,((H013,(H022,(H034, (H029,((H018,(H011,((H003,(H033,H010)),((H014,H017),H027)))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; 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(OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), ((H028,H001),(H015,H020)))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H001,(H028,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,(H008,((H016,(H032,(H021, (H002,(H009,(H012,(H023,H026))))))),((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H008,(H016,(H032,(H021, (H002,(H009,(H012,(H023,H026)))))))),((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,(((H032,H016),(H021,(H002, (H009,(H012,(H023,H026)))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),((H030,H006),(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,(H030,((H035,H007),(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H030,(H035,H007)),(H006,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H031,(H005,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H012,(H009,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,(H031,((H032,(H016,(H021, (H002,(H009,(H012,(H023,H026))))))),((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H008),(H024,(H031,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H008),(H031,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H032,(H016,(H021,(H002, (H009,(H012,(H023,H026))))))),(H031,((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H006,(H030,(H025,(H004,((H031,(H032,(H016,(H021, (H002,(H009,(H012,(H023,H026)))))))),((H005,H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H031,(H005,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H003,(H011,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(((H005,H031),H008),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,(H011,(H003,(H014,H017)))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,(H031,H008)),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),(H008,((H005,H031),(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, ((H012,H009),(H023,H026)))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H009,(H012,(H023,H026))))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,((H035,H007),(H030,(H006,(H025,(H004,((H016,(H032,(H021,(H002, (H012,(H009,(H023,H026))))))),((H005,H031),(H008,(H024,((H013,(H022, (H034,((H033,(H010,H027)),(H029,((H018,((H011,H003),(H014,H017))), (H028,(H001,(H015,H020))))))))),H019)))))))))))[0.0100]; (OUTG,(((H030,H006),(H025,H004)),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H030,(H006,(H025,H004))),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H006,(H030,(H025,H004))),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019))))))))))))))[0.0100]; (OUTG,((H025,H004),((H030,H006),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; (OUTG,((H030,H006),((H025,H004),((H035,H007),(H026,(H023,((H012,H009), (H002,(H021,(H016,(H032,(H008,((H005,H031),(H024,((H013,(H022,(((H033, H010),H034),(H029,((H018,((H011,H003),((H014,H017),H027))),((H001, H015),(H028,H020))))))),H019)))))))))))))))[0.0100]; ALTree-v1.3.2/test/phylip/outgroup_present/association/run_altree000077500000000000000000000006261412112337500253340ustar00rootroot00000000000000#!/bin/sh -x # To run phylip # options "5" and "o - 36" are selected (the outgroup is the 36th # sequence) phylip mix # To perform the association test # The outgroup is not removed, so it is not necessary to specify its # name. # Analysis on the first tree only altree -i outfile -j nb_cas_controls.txt \ -a -t SNP -p phylip -r 1 --data-qual qualitative \ --tree-to-analyse 1 -o 1_trio_phy.asso ALTree-v1.3.2/test/phylip/outgroup_present/association/trio.phy000066400000000000000000000014441412112337500247440ustar00rootroot00000000000000 36 10 H019 0100101111 H026 0111010001 H004 0100110001 H020 1000011110 H034 0100011110 H027 1111001110 H023 1111010001 H016 0101100001 H002 1111100001 H015 1000011101 H006 1000010001 H001 1000011111 H010 1101011110 H028 1000011011 H024 0100100011 H017 1111011111 H009 1111000101 H007 1101010001 H033 0101011110 H008 0100100001 H029 0100011111 H003 1101111111 H035 1101010000 H013 0100101110 H032 0101101001 H025 0100010001 H021 0111100101 H030 1100010011 H031 0100100101 H012 1111000001 H005 0100100000 H011 1101011111 H022 0100111110 H014 0111011111 H018 1100011111 OUTG 1100010001