debian/0000755000000000000000000000000012147656666007211 5ustar debian/copyright0000644000000000000000000000550012147656666011144 0ustar This package was debianized by Julien Dutheil on Fri, 08 Mar 2013 14:55:00 +0100 It was downloaded from Upstream Author: Julien Dutheil Copyright: Copyright (C) 2013 Bio++ Development Team License: This package is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA The Debian packaging is (C) 2013, Julien Dutheil and is licensed under the GPL, see `/usr/share/common-licenses/GPL'. The provided software is distributed under the CeCILL license: This software is governed by the CeCILL license under French law and abiding by the rules of distribution of free software. You can use, modify and/ or redistribute the software under the terms of the CeCILL license as circulated by CEA, CNRS and INRIA at the following URL "http://www.cecill.info". As a counterpart to the access to the source code and rights to copy, modify and redistribute granted by the license, users are provided only with a limited warranty and the software's author, the holder of the economic rights, and the successive licensors have only limited liability. In this respect, the user's attention is drawn to the risks associated with loading, using, modifying and/or developing or reproducing the software by the user in light of its specific status of free software, that may mean that it is complicated to manipulate, and that also therefore means that it is reserved for developers and experienced professionals having in-depth computer knowledge. Users are therefore encouraged to load and test the software's suitability as regards their requirements in conditions enabling the security of their systems and/or data to be ensured and, more generally, to use and operate it in the same conditions as regards security. The fact that you are presently reading this means that you have had knowledge of the CeCILL license and that you accept its terms. The complete text of the license may be found here: http://www.cecill.info/licences/Licence_CeCILL_V2-en.html debian/changelog0000644000000000000000000000135612147656666011070 0ustar bppphyview (0.3.0-1) unstable; urgency=low * Compatibility update. * New option for header line in names translation. -- Julien Dutheil Fri, 08 Mar 2013 14:55:00 +0100 bppphyview (0.2.1-1) unstable; urgency=low * Compatibility update. -- Julien Dutheil Thu, 09 Feb 2012 21:38:00 +0100 bppphyview (0.2.0-1) unstable; urgency=low * RFP: Bio++ -- The Bio++ bioinformatics libraries. (Closes: #616373). * Packages are now non-native. -- Julien Dutheil Thu, 09 Jun 2011 11:00:00 +0100 bppphyview (0.1.0) unstable; urgency=low * Initial release. -- Julien Dutheil Mon, 28 Feb 2011 09:00:00 +0100 debian/rules0000755000000000000000000000721312147656666010274 0ustar #!/usr/bin/make -f # -*- makefile -*- # Sample debian/rules that uses debhelper. # # This file was originally written by Joey Hess and Craig Small. # As a special exception, when this file is copied by dh-make into a # dh-make output file, you may use that output file without restriction. # This special exception was added by Craig Small in version 0.37 of dh-make. # # Modified to make a template file for a multi-binary package with separated # build-arch and build-indep targets by Bill Allombert 2001 # 25/03/10 Modification for use with CMake by Julien Dutheil. # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 # This has to be exported to make some magic below work. export DH_OPTIONS # These are used for cross-compiling and for saving the configure script # from having to guess our platform (since we know it already) DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE) DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE) CFLAGS = -Wall -g ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS))) CFLAGS += -O0 else CFLAGS += -O2 endif configure: cmake -DCMAKE_INSTALL_PREFIX=/usr . config.status: configure dh_testdir #Architecture build: build-arch build-indep build-arch: build-arch-stamp build-arch-stamp: config.status # Add here commands to compile the arch part of the package. #$(MAKE) touch $@ build-indep: build-indep-stamp build-indep-stamp: config.status # Add here commands to compile the indep part of the package. #$(MAKE) doc touch $@ clean: dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp #CONFIGURE-STAMP# rm -f CMakeCache.txt # Add here commands to clean up after the build process. [ ! -f Makefile ] || $(MAKE) clean; [ ! -f Makefile ] || rm Makefile; [ ! -f bppPhyView/Makefile ] || rm bppPhyView/Makefile; [ ! -f man/Makefile ] || rm man/Makefile; rm -f man/*.gz; rm -f config.sub config.guess rm -f build-stamp rm -f CMakeCache.txt rm -f *.cmake rm -f bppPhyView/*.cmake #rm -f test/*.cmake rm -f man/*.cmake #rm -f doc/*.cmake rm -rf CMakeFiles rm -rf bppPhyView/CMakeFiles #rm -rf test/CMakeFiles rm -rf man/CMakeFiles #rm -rf doc/CMakeFiles rm -rf _CPack_Packages #rm -rf Testing #rm -f DartConfiguration.tcl dh_clean install: install-indep install-arch install-indep: dh_testdir dh_testroot dh_prep -i dh_installdirs -i # Add here commands to install the indep part of the package into # debian/-doc. #INSTALLDOC# dh_install -i install-arch: dh_testdir dh_testroot dh_prep -s dh_installdirs -s # Add here commands to install the arch part of the package into # debian/tmp. $(MAKE) DESTDIR=$(CURDIR)/debian/bppphyview man install dh_install -s # Must not depend on anything. This is to be called by # binary-arch/binary-indep # in another 'make' thread. binary-common: dh_testdir dh_testroot dh_installchangelogs ChangeLog dh_installdocs dh_installexamples # dh_installmenu # dh_installdebconf # dh_installlogrotate # dh_installemacsen # dh_installpam # dh_installmime # dh_python # dh_installinit # dh_installcron dh_installinfo dh_installman dh_link dh_strip dh_compress dh_fixperms # dh_perl # dh_makeshlibs dh_installdeb dh_shlibdeps dh_gencontrol dh_md5sums dh_builddeb # Build architecture independant packages using the common target. binary-indep: build-indep install-indep $(MAKE) -f debian/rules DH_OPTIONS=-i binary-common # Build architecture dependant packages using the common target. binary-arch: build-arch install-arch $(MAKE) -f debian/rules DH_OPTIONS=-s binary-common binary: binary-arch binary-indep .PHONY: build clean binary-indep binary-arch binary install install-indep install-arch debian/compat0000644000000000000000000000000212147656666010407 0ustar 5 debian/control0000644000000000000000000000105512147656666010615 0ustar Source: bppphyview Section: science Priority: optional Maintainer: Loic Dachary Uploaders: Julien Dutheil Build-Depends: debhelper (>= 5), cmake (>= 2.6), qt4-qmake (>= 4.6.0), libqt4-dev (>= 4.6.0), libbpp-qt-dev (>= 2.1.0) Standards-Version: 3.9.1 Package: bppphyview Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, libbpp-qt1 (>= 2.1.0), libqtcore4 (>= 4.6.0), libqtgui4 (>= 4.6.0) Description: Bio++ Phylogenetic Viewer A phylogenetic tree editor developed using Bio++ and Qt. debian/source/0000755000000000000000000000000012147656666010511 5ustar debian/source/format0000644000000000000000000000001412147656666011717 0ustar 3.0 (quilt) debian/bppphyview.manpages0000644000000000000000000000002112147656666013114 0ustar man/phyview.1.gz